Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836850 | AES94768.2 | 52.564 | 78 | 35 | 1 | 153 | 228 | 49 | 126 | 7.12e-14 | 82.0 |
| Msa0836850 | AES94768.2 | 84.277 | 159 | 13 | 1 | 1 | 147 | 313 | 471 | 7.58e-82 | 262 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836850 | sp|O64837|RTNLM_ARATH | 33.094 | 139 | 79 | 2 | 32 | 156 | 19 | 157 | 1.30e-16 | 78.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836850 | G7K843 | 52.564 | 78 | 35 | 1 | 153 | 228 | 49 | 126 | 3.40e-14 | 82.0 |
| Msa0836850 | G7K843 | 84.277 | 159 | 13 | 1 | 1 | 147 | 313 | 471 | 3.62e-82 | 262 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007990 | Msa0836850 | 0.830084 | 3.584057e-55 | -8.615850e-47 |
| Msa0022550 | Msa0836850 | 0.813575 | 2.387795e-51 | -8.615850e-47 |
| Msa0042550 | Msa0836850 | 0.823952 | 1.049999e-53 | -8.615850e-47 |
| Msa0043500 | Msa0836850 | 0.800864 | 1.180136e-48 | -8.615850e-47 |
| Msa0045790 | Msa0836850 | 0.819252 | 1.280568e-52 | -8.615850e-47 |
| Msa0046160 | Msa0836850 | 0.811432 | 7.022742e-51 | -8.615850e-47 |
| Msa0054820 | Msa0836850 | 0.821349 | 4.233512e-53 | -8.615850e-47 |
| Msa0056450 | Msa0836850 | 0.801114 | 1.048842e-48 | -8.615850e-47 |
| Msa0100160 | Msa0836850 | 0.823259 | 1.525042e-53 | -8.615850e-47 |
| Msa0103250 | Msa0836850 | 0.823932 | 1.061006e-53 | -8.615850e-47 |
| Msa0112270 | Msa0836850 | 0.821075 | 4.895067e-53 | -8.615850e-47 |
| Msa0607580 | Msa0836850 | 0.812722 | 3.674367e-51 | -8.615850e-47 |
| Msa0616760 | Msa0836850 | 0.811811 | 5.808152e-51 | -8.615850e-47 |
| Msa0631330 | Msa0836850 | 0.820464 | 6.765210e-53 | -8.615850e-47 |
| Msa0632370 | Msa0836850 | 0.800052 | 1.726911e-48 | -8.615850e-47 |
| Msa0640860 | Msa0836850 | 0.804527 | 2.069927e-49 | -8.615850e-47 |
| Msa0662570 | Msa0836850 | 0.827518 | 1.496892e-54 | -8.615850e-47 |
| Msa0678040 | Msa0836850 | 0.800121 | 1.671671e-48 | -8.615850e-47 |
| Msa0678130 | Msa0836850 | 0.812394 | 4.333417e-51 | -8.615850e-47 |
| Msa0682330 | Msa0836850 | 0.806766 | 7.013375e-50 | -8.615850e-47 |
| Msa0683510 | Msa0836850 | 0.801818 | 7.524254e-49 | -8.615850e-47 |
| Msa0711830 | Msa0836850 | 0.804346 | 2.257244e-49 | -8.615850e-47 |
| Msa0715420 | Msa0836850 | 0.896114 | 5.031663e-76 | -8.615850e-47 |
| Msa0731940 | Msa0836850 | 0.803244 | 3.824263e-49 | -8.615850e-47 |
| Msa0737570 | Msa0836850 | 0.812303 | 4.536746e-51 | -8.615850e-47 |
| Msa0751260 | Msa0836850 | 0.811200 | 7.883430e-51 | -8.615850e-47 |
| Msa0760130 | Msa0836850 | 0.814541 | 1.461790e-51 | -8.615850e-47 |
| Msa0767300 | Msa0836850 | 0.808373 | 3.197743e-50 | -8.615850e-47 |
| Msa0772710 | Msa0836850 | 0.833752 | 4.451250e-56 | -8.615850e-47 |
| Msa0795070 | Msa0836850 | 0.821176 | 4.639576e-53 | -8.615850e-47 |
| Msa0798310 | Msa0836850 | 0.855780 | 5.014969e-62 | -8.615850e-47 |
| Msa0811130 | Msa0836850 | 0.816312 | 5.901676e-52 | -8.615850e-47 |
| Msa0814710 | Msa0836850 | 0.802680 | 5.000793e-49 | -8.615850e-47 |
| Msa0830510 | Msa0836850 | 0.803940 | 2.742517e-49 | -8.615850e-47 |
| Msa0836850 | Msa0856920 | 0.807388 | 5.178674e-50 | -8.615850e-47 |
| Msa0836850 | Msa0880950 | 0.802386 | 5.749614e-49 | -8.615850e-47 |
| Msa0836850 | Msa0887960 | 0.809216 | 2.111627e-50 | -8.615850e-47 |
| Msa0836850 | Msa0899970 | 0.821023 | 5.031425e-53 | -8.615850e-47 |
| Msa0836850 | Msa0900620 | 0.820129 | 8.073425e-53 | -8.615850e-47 |
| Msa0836850 | Msa0902830 | 0.813985 | 1.939215e-51 | -8.615850e-47 |
| Msa0836850 | Msa0903390 | 0.814632 | 1.395451e-51 | -8.615850e-47 |
| Msa0836850 | Msa0923010 | 0.822048 | 2.917583e-53 | -8.615850e-47 |
| Msa0836850 | Msa0926470 | 0.820233 | 7.642460e-53 | -8.615850e-47 |
| Msa0836850 | Msa0926890 | 0.836208 | 1.070601e-56 | -8.615850e-47 |
| Msa0836850 | Msa0932350 | 0.804839 | 1.781451e-49 | -8.615850e-47 |
| Msa0836850 | Msa0952360 | 0.800195 | 1.614970e-48 | -8.615850e-47 |
| Msa0836850 | Msa0961310 | 0.800174 | 1.631218e-48 | -8.615850e-47 |
| Msa0836850 | Msa0961360 | 0.818203 | 2.215272e-52 | -8.615850e-47 |
| Msa0836850 | Msa0964130 | 0.802786 | 4.754957e-49 | -8.615850e-47 |
| Msa0836850 | Msa0965080 | 0.821625 | 3.654669e-53 | -8.615850e-47 |
| Msa0836850 | Msa0965290 | 0.820877 | 5.438798e-53 | -8.615850e-47 |
| Msa0836850 | Msa0969520 | 0.818165 | 2.260505e-52 | -8.615850e-47 |
| Msa0836850 | Msa0973600 | 0.830698 | 2.536364e-55 | -8.615850e-47 |
| Msa0836850 | Msa0999680 | 0.819259 | 1.275632e-52 | -8.615850e-47 |
| Msa0836850 | Msa1000160 | 0.805285 | 1.437087e-49 | -8.615850e-47 |
| Msa0836850 | Msa1000170 | 0.818645 | 1.759665e-52 | -8.615850e-47 |
| Msa0836850 | Msa1000290 | 0.807378 | 5.203867e-50 | -8.615850e-47 |
| Msa0836850 | Msa1010070 | 0.807458 | 5.005549e-50 | -8.615850e-47 |
| Msa0836850 | Msa1019000 | 0.824162 | 9.370856e-54 | -8.615850e-47 |
| Msa0836850 | Msa1019150 | 0.809231 | 2.096346e-50 | -8.615850e-47 |
| Msa0836850 | Msa1034500 | 0.805690 | 1.181899e-49 | -8.615850e-47 |
| Msa0836850 | Msa1038080 | 0.811982 | 5.332277e-51 | -8.615850e-47 |
| Msa0836850 | Msa1041670 | 0.803492 | 3.396963e-49 | -8.615850e-47 |
| Msa0836850 | Msa1068580 | 0.816581 | 5.137799e-52 | -8.615850e-47 |
| Msa0836850 | Msa1080960 | 0.817410 | 3.345747e-52 | -8.615850e-47 |
| Msa0836850 | Msa1102770 | 0.806498 | 7.989183e-50 | -8.615850e-47 |
| Msa0836850 | Msa1112380 | 0.807713 | 4.418223e-50 | -8.615850e-47 |
| Msa0836850 | Msa1119090 | 0.800598 | 1.336936e-48 | -8.615850e-47 |
| Msa0836850 | Msa1139890 | 0.820280 | 7.457164e-53 | -8.615850e-47 |
| Msa0836850 | Msa1145810 | 0.823393 | 1.418698e-53 | -8.615850e-47 |
| Msa0836850 | Msa1147740 | 0.816489 | 5.385219e-52 | -8.615850e-47 |
| Msa0836850 | Msa1156570 | 0.827891 | 1.217577e-54 | -8.615850e-47 |
| Msa0836850 | Msa1166560 | 0.805345 | 1.396169e-49 | -8.615850e-47 |
| Msa0836850 | Msa1177330 | 0.810433 | 1.155288e-50 | -8.615850e-47 |
| Msa0836850 | Msa1193170 | 0.800389 | 1.474608e-48 | -8.615850e-47 |
| Msa0836850 | Msa1199570 | 0.808211 | 3.461569e-50 | -8.615850e-47 |
| Msa0836850 | Msa1205370 | 0.805019 | 1.633983e-49 | -8.615850e-47 |
| Msa0836850 | Msa1236730 | 0.833646 | 4.733170e-56 | -8.615850e-47 |
| Msa0836850 | Msa1240510 | 0.811011 | 8.667014e-51 | -8.615850e-47 |
| Msa0836850 | Msa1255060 | 0.812471 | 4.169238e-51 | -8.615850e-47 |
| Msa0836850 | Msa1267900 | 0.815794 | 7.702362e-52 | -8.615850e-47 |
| Msa0836850 | Msa1277150 | 0.810427 | 1.158848e-50 | -8.615850e-47 |
| Msa0836850 | Msa1297290 | 0.816183 | 6.305279e-52 | -8.615850e-47 |
| Msa0836850 | Msa1307210 | 0.848847 | 4.721277e-60 | -8.615850e-47 |
| Msa0836850 | Msa1317130 | 0.816161 | 6.377043e-52 | -8.615850e-47 |
| Msa0836850 | Msa1321050 | 0.842195 | 2.999908e-58 | -8.615850e-47 |
| Msa0836850 | Msa1328710 | 0.800608 | 1.330867e-48 | -8.615850e-47 |
| Msa0836850 | Msa1332000 | 0.806577 | 7.688976e-50 | -8.615850e-47 |
| Msa0836850 | Msa1344890 | 0.808523 | 2.970846e-50 | -8.615850e-47 |
| Msa0836850 | Msa1359560 | 0.813293 | 2.754450e-51 | -8.615850e-47 |
| Msa0836850 | Msa1372150 | 0.826800 | 2.223414e-54 | -8.615850e-47 |
| Msa0836850 | Msa1385000 | 0.817623 | 2.995414e-52 | -8.615850e-47 |
| Msa0836850 | Msa1394380 | 0.820775 | 5.738894e-53 | -8.615850e-47 |
| Msa0836850 | Msa1398540 | 0.805346 | 1.395778e-49 | -8.615850e-47 |
| Msa0836850 | Msa1398890 | 0.833118 | 6.408872e-56 | -8.615850e-47 |
| Msa0836850 | Msa1408620 | -0.808220 | 3.447335e-50 | -8.615850e-47 |
| Msa0836850 | Msa1413610 | 0.803144 | 4.010540e-49 | -8.615850e-47 |
| Msa0836850 | Msa1436480 | 0.818661 | 1.744349e-52 | -8.615850e-47 |
| Msa0836850 | Msa1441580 | 0.800929 | 1.144125e-48 | -8.615850e-47 |
| Msa0836850 | Msa1446330 | 0.803421 | 3.513968e-49 | -8.615850e-47 |
| Msa0836850 | Msa1446780 | 0.810296 | 1.236879e-50 | -8.615850e-47 |
| Msa0836850 | Msa1463900 | 0.800103 | 1.686549e-48 | -8.615850e-47 |
| Msa0836850 | Msa1466540 | 0.827321 | 1.668457e-54 | -8.615850e-47 |
| Msa0123100 | Msa0836850 | 0.813374 | 2.644211e-51 | -8.615850e-47 |
| Msa0123300 | Msa0836850 | 0.827138 | 1.846233e-54 | -8.615850e-47 |
| Msa0149300 | Msa0836850 | 0.834479 | 2.927163e-56 | -8.615850e-47 |
| Msa0169860 | Msa0836850 | 0.816141 | 6.444947e-52 | -8.615850e-47 |
| Msa0170030 | Msa0836850 | 0.811816 | 5.793828e-51 | -8.615850e-47 |
| Msa0178510 | Msa0836850 | 0.828334 | 9.525205e-55 | -8.615850e-47 |
| Msa0187030 | Msa0836850 | 0.818918 | 1.524906e-52 | -8.615850e-47 |
| Msa0188150 | Msa0836850 | 0.825827 | 3.791560e-54 | -8.615850e-47 |
| Msa0204840 | Msa0836850 | 0.822512 | 2.276482e-53 | -8.615850e-47 |
| Msa0211150 | Msa0836850 | 0.804785 | 1.828649e-49 | -8.615850e-47 |
| Msa0225220 | Msa0836850 | 0.803731 | 3.030437e-49 | -8.615850e-47 |
| Msa0233290 | Msa0836850 | 0.814756 | 1.310305e-51 | -8.615850e-47 |
| Msa0367870 | Msa0836850 | 0.809486 | 1.847417e-50 | -8.615850e-47 |
| Msa0389910 | Msa0836850 | 0.808991 | 2.359092e-50 | -8.615850e-47 |
| Msa0405130 | Msa0836850 | 0.818390 | 2.009470e-52 | -8.615850e-47 |
| Msa0423860 | Msa0836850 | 0.803826 | 2.896116e-49 | -8.615850e-47 |
| Msa0428580 | Msa0836850 | 0.804111 | 2.526758e-49 | -8.615850e-47 |
| Msa0440440 | Msa0836850 | 0.812162 | 4.869421e-51 | -8.615850e-47 |
| Msa0474940 | Msa0836850 | 0.800165 | 1.638276e-48 | -8.615850e-47 |
| Msa0477620 | Msa0836850 | 0.806433 | 8.246308e-50 | -8.615850e-47 |
| Msa0243250 | Msa0836850 | 0.806745 | 7.086025e-50 | -8.615850e-47 |
| Msa0254790 | Msa0836850 | 0.809693 | 1.668191e-50 | -8.615850e-47 |
| Msa0311610 | Msa0836850 | 0.822324 | 2.517328e-53 | -8.615850e-47 |
| Msa0317730 | Msa0836850 | 0.822256 | 2.610213e-53 | -8.615850e-47 |
| Msa0317740 | Msa0836850 | 0.813825 | 2.104184e-51 | -8.615850e-47 |
| Msa0342010 | Msa0836850 | 0.815496 | 8.974401e-52 | -8.615850e-47 |
| Msa0358890 | Msa0836850 | 0.813880 | 2.046393e-51 | -8.615850e-47 |
| Msa0363790 | Msa0836850 | 0.807262 | 5.508818e-50 | -8.615850e-47 |
| Msa0483650 | Msa0836850 | 0.803201 | 3.902339e-49 | -8.615850e-47 |
| Msa0546680 | Msa0836850 | 0.802953 | 4.392765e-49 | -8.615850e-47 |
| Msa0559500 | Msa0836850 | 0.804737 | 1.871434e-49 | -8.615850e-47 |
| Msa0572480 | Msa0836850 | 0.804506 | 2.090335e-49 | -8.615850e-47 |
| Msa0579660 | Msa0836850 | 0.809652 | 1.701952e-50 | -8.615850e-47 |
| Msa0599080 | Msa0836850 | 0.814106 | 1.823894e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836850 | MtrunA17_Chr5g0402701 | 84.277 | 159 | 13 | 1 | 1 | 147 | 313 | 471 | 6.97e-86 | 262 |
| Msa0836850 | MtrunA17_Chr5g0402701 | 52.564 | 78 | 35 | 1 | 153 | 228 | 49 | 126 | 6.54e-18 | 82.0 |
| Msa0836850 | MtrunA17_Chr5g0402811 | 67.722 | 158 | 26 | 2 | 2 | 147 | 19 | 163 | 3.92e-67 | 206 |
| Msa0836850 | MtrunA17_Chr5g0402691 | 67.105 | 152 | 37 | 2 | 17 | 155 | 266 | 417 | 5.28e-58 | 189 |
| Msa0836850 | MtrunA17_Chr5g0402761 | 60.000 | 80 | 30 | 1 | 151 | 228 | 47 | 126 | 1.43e-20 | 87.8 |
| Msa0836850 | MtrunA17_Chr5g0402671 | 52.564 | 78 | 35 | 1 | 153 | 228 | 45 | 122 | 1.83e-15 | 75.1 |
| Msa0836850 | MtrunA17_Chr5g0402771 | 51.282 | 78 | 36 | 1 | 153 | 228 | 49 | 126 | 3.17e-15 | 74.3 |
| Msa0836850 | MtrunA17_Chr8g0387631 | 33.071 | 127 | 73 | 1 | 34 | 148 | 79 | 205 | 6.84e-15 | 71.6 |
| Msa0836850 | MtrunA17_Chr8g0348131 | 33.333 | 126 | 72 | 1 | 34 | 147 | 83 | 208 | 9.76e-13 | 65.9 |
| Msa0836850 | MtrunA17_Chr1g0202401 | 30.469 | 128 | 77 | 1 | 32 | 147 | 70 | 197 | 1.35e-12 | 65.1 |
| Msa0836850 | MtrunA17_Chr5g0402681 | 50.602 | 83 | 35 | 3 | 150 | 228 | 42 | 122 | 2.28e-12 | 65.9 |
| Msa0836850 | MtrunA17_Chr5g0402721 | 50.000 | 80 | 35 | 2 | 153 | 228 | 45 | 123 | 2.20e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836850 | AT2G23640.1 | 33.094 | 139 | 79 | 2 | 32 | 156 | 19 | 157 | 1.32e-17 | 78.6 |
| Msa0836850 | AT3G61560.3 | 32.540 | 126 | 73 | 1 | 34 | 147 | 73 | 198 | 2.23e-13 | 67.0 |
| Msa0836850 | AT3G61560.1 | 32.540 | 126 | 73 | 1 | 34 | 147 | 73 | 198 | 2.30e-13 | 67.8 |
| Msa0836850 | AT3G61560.2 | 32.540 | 126 | 73 | 1 | 34 | 147 | 73 | 198 | 2.30e-13 | 67.8 |
| Msa0836850 | AT4G23630.1 | 29.134 | 127 | 78 | 1 | 34 | 148 | 94 | 220 | 3.92e-13 | 67.4 |
| Msa0836850 | AT4G23630.2 | 29.134 | 127 | 78 | 1 | 34 | 148 | 94 | 220 | 3.92e-13 | 67.4 |
| Msa0836850 | AT5G41600.1 | 27.559 | 127 | 80 | 1 | 32 | 146 | 71 | 197 | 1.03e-12 | 65.9 |
| Msa0836850 | AT1G64090.2 | 28.472 | 144 | 91 | 1 | 17 | 148 | 68 | 211 | 2.86e-12 | 64.7 |
| Msa0836850 | AT1G64090.1 | 29.457 | 129 | 79 | 1 | 32 | 148 | 67 | 195 | 5.05e-12 | 63.9 |
| Msa0836850 | AT4G11220.1 | 29.008 | 131 | 77 | 2 | 32 | 148 | 88 | 216 | 6.90e-12 | 63.9 |
Find 40 sgRNAs with CRISPR-Local
Find 306 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATCTCTCTATCTCTTCTT+TGG | 0.150819 | 5_4:+10568673 | None:intergenic |
| TTGTTCAATTTGAGATTAAA+AGG | 0.195544 | 5_4:-10568520 | Msa0836850:CDS |
| GTACAAGTATTCTAGTACTA+TGG | 0.244520 | 5_4:-10573456 | Msa0836850:CDS |
| GAAGCAAATTGAGAAGATTA+AGG | 0.288036 | 5_4:-10568558 | Msa0836850:CDS |
| GAAAGGTTGCAATGATTCAT+TGG | 0.329158 | 5_4:-10568702 | Msa0836850:CDS |
| AAATCAAGCCTCAACAAGTT+TGG | 0.340675 | 5_4:+10572997 | None:intergenic |
| AATCTCTCTATCTCTTCTTT+GGG | 0.351414 | 5_4:+10568674 | None:intergenic |
| TTCCTAACATTTATTTATAT+AGG | 0.392131 | 5_4:-10572814 | Msa0836850:intron |
| GCATGTGTTTGTGGGAGTTA+TGG | 0.420480 | 5_4:-10572878 | Msa0836850:CDS |
| TACCTATATAAATAAATGTT+AGG | 0.429849 | 5_4:+10572812 | None:intergenic |
| AAAGGTTGCAATGATTCATT+GGG | 0.457038 | 5_4:-10568701 | Msa0836850:CDS |
| TGTTCAATTTGAGATTAAAA+GGG | 0.464809 | 5_4:-10568519 | Msa0836850:CDS |
| ACTTCCTCACTCTTATCTCA+TGG | 0.469314 | 5_4:-10573357 | Msa0836850:CDS |
| ATCAATAAGGTGGTTGTTCG+TGG | 0.471872 | 5_4:-10572920 | Msa0836850:CDS |
| GGGAGTTATGGCTACGTTGT+TGG | 0.486141 | 5_4:-10572866 | Msa0836850:CDS |
| GAAAGATTGGCATGTGTTTG+TGG | 0.488969 | 5_4:-10572887 | Msa0836850:CDS |
| CTCTTATGTAGGAGCCTGCA+TGG | 0.498378 | 5_4:-10572839 | Msa0836850:CDS |
| TGGTAAGCATAAAGAAAGAT+TGG | 0.509969 | 5_4:-10572900 | Msa0836850:CDS |
| AGAAGAAACAGCTGTGAGAA+TGG | 0.511563 | 5_4:-10572971 | Msa0836850:CDS |
| AAAGATTGGCATGTGTTTGT+GGG | 0.514124 | 5_4:-10572886 | Msa0836850:CDS |
| TGAGATTAAAAGGGATGTCA+TGG | 0.522107 | 5_4:-10568510 | Msa0836850:CDS |
| TTGTTGGTAATCTCTTATGT+AGG | 0.529651 | 5_4:-10572850 | Msa0836850:CDS |
| TAGTGCTATTGTTCTAATTG+CGG | 0.541264 | 5_4:-10573419 | Msa0836850:CDS |
| TCAAGCCTCAACAAGTTTGG+TGG | 0.545407 | 5_4:+10573000 | None:intergenic |
| AAATGTTAGGAAGTCCATGC+AGG | 0.559443 | 5_4:+10572825 | None:intergenic |
| TGATGGCAATGACATGTTGA+AGG | 0.566160 | 5_4:-10573509 | Msa0836850:CDS |
| TAATTGCGGCAACAGCAACA+TGG | 0.571430 | 5_4:-10573405 | Msa0836850:CDS |
| GGGAACCACCAAACTTGTTG+AGG | 0.576992 | 5_4:-10573005 | Msa0836850:CDS |
| TGGCAAAGACAGTTCGAGCA+TGG | 0.577331 | 5_4:-10572951 | Msa0836850:CDS |
| CTTAAGGTAGAAGAATTGAA+AGG | 0.579410 | 5_4:-10568719 | Msa0836850:intron |
| GTATTCTAGTACTATGGAGG+AGG | 0.580906 | 5_4:-10573450 | Msa0836850:CDS |
| AACAGCAACATGGGTGTCGA+TGG | 0.583057 | 5_4:-10573395 | Msa0836850:CDS |
| AGGACATAGTACTAAGGAGG+AGG | 0.593192 | 5_4:-10573489 | Msa0836850:CDS |
| TGTTGAAGGACATAGTACTA+AGG | 0.601273 | 5_4:-10573495 | Msa0836850:CDS |
| AATTGCGGCAACAGCAACAT+GGG | 0.623933 | 5_4:-10573404 | Msa0836850:CDS |
| CAAGTATTCTAGTACTATGG+AGG | 0.626582 | 5_4:-10573453 | Msa0836850:CDS |
| GAGAGATTAGAGACACTCGT+AGG | 0.642073 | 5_4:-10568659 | Msa0836850:CDS |
| GATTAAAAGGGATGTCATGG+AGG | 0.647456 | 5_4:-10568507 | None:intergenic |
| TGAAGGACATAGTACTAAGG+AGG | 0.664572 | 5_4:-10573492 | Msa0836850:CDS |
| TGAGCCATGAGATAAGAGTG+AGG | 0.673885 | 5_4:+10573353 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | - | chr5_4:10571132-10571151 | Msa0836850:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | - | chr5_4:10571131-10571150 | Msa0836850:intron | 0.0% |
| !!! | AAATAAATATTTATATTTTT+AGG | - | chr5_4:10572653-10572672 | Msa0836850:intron | 0.0% |
| !! | ATTTGTAATGTTAATAATAA+TGG | - | chr5_4:10570174-10570193 | Msa0836850:intron | 10.0% |
| !!! | ATTTTTATTTTTTTTTTGAC+GGG | - | chr5_4:10572188-10572207 | Msa0836850:intron | 10.0% |
| !!! | TTTTTTATTTTATGTTTTGA+TGG | + | chr5_4:10572904-10572923 | None:intergenic | 10.0% |
| !! | AATTTCACACAATAAATAAA+TGG | + | chr5_4:10569019-10569038 | None:intergenic | 15.0% |
| !! | TTATTTATTGTGTGAAATTT+AGG | - | chr5_4:10569020-10569039 | Msa0836850:intron | 15.0% |
| !! | TATTTATTGTGTGAAATTTA+GGG | - | chr5_4:10569021-10569040 | Msa0836850:intron | 15.0% |
| !! | TTCCTAACATTTATTTATAT+AGG | - | chr5_4:10569232-10569251 | Msa0836850:intron | 15.0% |
| !! | TACCTATATAAATAAATGTT+AGG | + | chr5_4:10569237-10569256 | None:intergenic | 15.0% |
| !!! | TTTATTTTGTTTTGTTCAAT+AGG | - | chr5_4:10569326-10569345 | Msa0836850:intron | 15.0% |
| !!! | ATTTGTTATAGTTCATTATT+TGG | - | chr5_4:10570361-10570380 | Msa0836850:intron | 15.0% |
| !! | ATAAATAAGATTGAAATCTA+AGG | - | chr5_4:10571660-10571679 | Msa0836850:intron | 15.0% |
| !! | TAAATAAGATTGAAATCTAA+GGG | - | chr5_4:10571661-10571680 | Msa0836850:intron | 15.0% |
| !!! | AATTATAATTTAGGTTTGAA+AGG | + | chr5_4:10571856-10571875 | None:intergenic | 15.0% |
| !! | ACTATGTGAAATTATAATTT+AGG | + | chr5_4:10571865-10571884 | None:intergenic | 15.0% |
| !! | AAGGATAAATTAAAAGATAT+TGG | + | chr5_4:10572434-10572453 | None:intergenic | 15.0% |
| !!! | TAGTTTGTTACATTTTTTTA+AGG | + | chr5_4:10572453-10572472 | None:intergenic | 15.0% |
| !! | AATTGTTTAAGTGTATAATT+AGG | + | chr5_4:10572508-10572527 | None:intergenic | 15.0% |
| !! | GGTAAAAAGTAGATAATTAA+AGG | + | chr5_4:10569282-10569301 | None:intergenic | 20.0% |
| !! | GTTGGATAATAAATTTGATT+TGG | - | chr5_4:10569420-10569439 | Msa0836850:intron | 20.0% |
| !!! | CAAACTCTCTTTTATTATAT+AGG | + | chr5_4:10569671-10569690 | None:intergenic | 20.0% |
| !!! | AATCACAATTCATAAGTTTT+CGG | + | chr5_4:10570480-10570499 | None:intergenic | 20.0% |
| !! | TCATTCTTAAACATATTCTT+GGG | + | chr5_4:10570900-10570919 | None:intergenic | 20.0% |
| !! | ATCATTCTTAAACATATTCT+TGG | + | chr5_4:10570901-10570920 | None:intergenic | 20.0% |
| !! | TTAGTTATAACTTTGCTAAA+AGG | + | chr5_4:10571275-10571294 | None:intergenic | 20.0% |
| !! | AACAAAACCCTATATATATT+AGG | - | chr5_4:10571356-10571375 | Msa0836850:intron | 20.0% |
| !!! | TAAGTCTTTTGACTTATATT+TGG | + | chr5_4:10571397-10571416 | None:intergenic | 20.0% |
| !!! | TTATTGGCTAACATTAATTT+CGG | + | chr5_4:10571575-10571594 | None:intergenic | 20.0% |
| !!! | ATTTGATTCTTTTAAGTTTG+TGG | + | chr5_4:10571820-10571839 | None:intergenic | 20.0% |
| !! | AGAATTTAGAAAAGCAAAAT+CGG | - | chr5_4:10572128-10572147 | Msa0836850:intron | 20.0% |
| !!! | CTTTCTCAACTTATTTTATA+GGG | + | chr5_4:10572263-10572282 | None:intergenic | 20.0% |
| !!! | CTATAAAATAAGTTGAGAAA+GGG | - | chr5_4:10572262-10572281 | Msa0836850:intron | 20.0% |
| !!! | TATAAAATAAGTTGAGAAAG+GGG | - | chr5_4:10572263-10572282 | Msa0836850:intron | 20.0% |
| !! | ATTCAATCTAATTAATCCAT+TGG | + | chr5_4:10572350-10572369 | None:intergenic | 20.0% |
| !!! | AATGGATTAATTAGATTGAA+TGG | - | chr5_4:10572349-10572368 | Msa0836850:intron | 20.0% |
| !! | ATAGATAATCATAGTTAGTT+TGG | - | chr5_4:10572613-10572632 | Msa0836850:intron | 20.0% |
| !!! | CTTTTTATTGTACTAACATT+TGG | + | chr5_4:10572724-10572743 | None:intergenic | 20.0% |
| !! | TATGATCTGTAGTTATTTAT+AGG | + | chr5_4:10573071-10573090 | None:intergenic | 20.0% |
| !!! | AGTAATTAATGTTGTTATTG+TGG | + | chr5_4:10573141-10573160 | None:intergenic | 20.0% |
| !!! | TTGTTCAATTTGAGATTAAA+AGG | - | chr5_4:10573526-10573545 | Msa0836850:CDS | 20.0% |
| !!! | TGTTCAATTTGAGATTAAAA+GGG | - | chr5_4:10573527-10573546 | Msa0836850:CDS | 20.0% |
| ! | AATGTCTTGTATATGTGTAT+TGG | - | chr5_4:10568905-10568924 | Msa0836850:intron | 25.0% |
| !!! | ACTTATTCATTCTAAAGTGT+TGG | - | chr5_4:10568965-10568984 | Msa0836850:intron | 25.0% |
| !!! | ATAAATTTGATTTGGTCCAT+TGG | - | chr5_4:10569428-10569447 | Msa0836850:intron | 25.0% |
| !! | TTTTATTATATAGGCTCCAA+AGG | + | chr5_4:10569662-10569681 | None:intergenic | 25.0% |
| !!! | GGTTCTTTTCTTACTTTTTT+GGG | + | chr5_4:10569793-10569812 | None:intergenic | 25.0% |
| !!! | TGGTTCTTTTCTTACTTTTT+TGG | + | chr5_4:10569794-10569813 | None:intergenic | 25.0% |
| !!! | ACAAAGATTGTTAGCTTTTT+CGG | - | chr5_4:10570444-10570463 | Msa0836850:intron | 25.0% |
| !! | AATTGCAGAGATTTTATGAA+CGG | - | chr5_4:10570567-10570586 | Msa0836850:intron | 25.0% |
| !!! | TTAGTTTTTAGGAGTGTTTA+TGG | + | chr5_4:10570611-10570630 | None:intergenic | 25.0% |
| ! | TAAAGCAAAAGTAAGAAAAG+TGG | - | chr5_4:10570641-10570660 | Msa0836850:intron | 25.0% |
| !!! | TATGATCTATGACTTGTTTT+AGG | + | chr5_4:10570715-10570734 | None:intergenic | 25.0% |
| !! | TCAAATAAACTGAGAGTTTT+CGG | - | chr5_4:10570822-10570841 | Msa0836850:intron | 25.0% |
| ! | TCATTTGTAGCATAAAGTTA+AGG | - | chr5_4:10571043-10571062 | Msa0836850:intron | 25.0% |
| ! | CATTTGTAGCATAAAGTTAA+GGG | - | chr5_4:10571044-10571063 | Msa0836850:intron | 25.0% |
| ! | ATTTGTAGCATAAAGTTAAG+GGG | - | chr5_4:10571045-10571064 | Msa0836850:intron | 25.0% |
| ! | ATAAAAGACACCTTCATAAA+AGG | + | chr5_4:10571198-10571217 | None:intergenic | 25.0% |
| ! | AAAGTGAAAATCACATCTTA+AGG | - | chr5_4:10571295-10571314 | Msa0836850:intron | 25.0% |
| ! | AAACCCTATATATATTAGGT+AGG | - | chr5_4:10571360-10571379 | Msa0836850:intron | 25.0% |
| ! | GATCCTACCTAATATATATA+GGG | + | chr5_4:10571366-10571385 | None:intergenic | 25.0% |
| ! | ATTGGATTGTATAGATTGAA+TGG | + | chr5_4:10571433-10571452 | None:intergenic | 25.0% |
| ! | ATTCAATCTATACAATCCAA+TGG | - | chr5_4:10571432-10571451 | Msa0836850:intron | 25.0% |
| ! | ATCACTAAAACATCTTTGAA+GGG | + | chr5_4:10571490-10571509 | None:intergenic | 25.0% |
| ! | AATCACTAAAACATCTTTGA+AGG | + | chr5_4:10571491-10571510 | None:intergenic | 25.0% |
| !! | TATTGGCTAACATTAATTTC+GGG | + | chr5_4:10571574-10571593 | None:intergenic | 25.0% |
| ! | AAAATGCTAGATATCAAGAA+TGG | + | chr5_4:10571728-10571747 | None:intergenic | 25.0% |
| !!! | GTTATGGAGTAATTTTAGTA+CGG | + | chr5_4:10571751-10571770 | None:intergenic | 25.0% |
| !! | TCAAGGAGAATTATTTGTTA+TGG | + | chr5_4:10571767-10571786 | None:intergenic | 25.0% |
| ! | TGTATCAACACATATATTTG+TGG | + | chr5_4:10572022-10572041 | None:intergenic | 25.0% |
| ! | GTATTATAAAGATGATACAG+AGG | - | chr5_4:10572045-10572064 | Msa0836850:intron | 25.0% |
| !!! | CCTTTCTCAACTTATTTTAT+AGG | + | chr5_4:10572264-10572283 | None:intergenic | 25.0% |
| !! | CCTATAAAATAAGTTGAGAA+AGG | - | chr5_4:10572261-10572280 | Msa0836850:intron | 25.0% |
| ! | ATTAAAAGATATTGGACATG+AGG | + | chr5_4:10572426-10572445 | None:intergenic | 25.0% |
| !! | AGTGATCTTTTATGACATTT+TGG | + | chr5_4:10572690-10572709 | None:intergenic | 25.0% |
| !!! | GTTTTGATGGATAGATAATT+GGG | + | chr5_4:10572891-10572910 | None:intergenic | 25.0% |
| !!! | TGTTTTGATGGATAGATAAT+TGG | + | chr5_4:10572892-10572911 | None:intergenic | 25.0% |
| ! | AAATTAGTGTGAATGAGATA+GGG | - | chr5_4:10572930-10572949 | Msa0836850:CDS | 25.0% |
| ! | GCTCTTGAAACAATAAAAAA+TGG | - | chr5_4:10573249-10573268 | Msa0836850:intron | 25.0% |
| GTACAAGTATTCTAGTACTA+TGG | - | chr5_4:10568590-10568609 | Msa0836850:CDS | 30.0% | |
| ! | TAGTGCTATTGTTCTAATTG+CGG | - | chr5_4:10568627-10568646 | Msa0836850:CDS | 30.0% |
| GAAATTTGCATTAGAAGTAG+AGG | + | chr5_4:10568794-10568813 | None:intergenic | 30.0% | |
| ! | ATCAGTGTTAGTCTACATAA+TGG | + | chr5_4:10568826-10568845 | None:intergenic | 30.0% |
| CAAAACTAAAGTGTGTCTAA+TGG | + | chr5_4:10568931-10568950 | None:intergenic | 30.0% | |
| ! | CATGGACTGAAAAATCAATA+AGG | - | chr5_4:10569113-10569132 | Msa0836850:intron | 30.0% |
| TGGTAAGCATAAAGAAAGAT+TGG | - | chr5_4:10569146-10569165 | Msa0836850:intron | 30.0% | |
| !! | TTGTTGGTAATCTCTTATGT+AGG | - | chr5_4:10569196-10569215 | Msa0836850:intron | 30.0% |
| TTAATACAACCAATTCGAGA+GGG | + | chr5_4:10569304-10569323 | None:intergenic | 30.0% | |
| TTTAATACAACCAATTCGAG+AGG | + | chr5_4:10569305-10569324 | None:intergenic | 30.0% | |
| !!! | TAGACCCATTTTAGTTTAAG+TGG | - | chr5_4:10569464-10569483 | Msa0836850:intron | 30.0% |
| ACTAAAAAAACCGCAAACAA+AGG | - | chr5_4:10569845-10569864 | Msa0836850:intron | 30.0% | |
| GGGAATGAGAAAAAACATAT+GGG | - | chr5_4:10570294-10570313 | Msa0836850:intron | 30.0% | |
| !!! | ACAATCTTTGTCATTTTTGC+AGG | + | chr5_4:10570435-10570454 | None:intergenic | 30.0% |
| AGTGTTGTATTTGATGTCAA+AGG | - | chr5_4:10570502-10570521 | Msa0836850:intron | 30.0% | |
| !!! | ACTTGTTTTAGGCTATAGAT+AGG | + | chr5_4:10570704-10570723 | None:intergenic | 30.0% |
| ! | CGGATTATATAATCTGAAAC+TGG | - | chr5_4:10570842-10570861 | Msa0836850:intron | 30.0% |
| AAACATATTCTTGGGCTATT+TGG | + | chr5_4:10570892-10570911 | None:intergenic | 30.0% | |
| ! | ATAGAAGACACCTTTTATGA+AGG | - | chr5_4:10571185-10571204 | Msa0836850:intron | 30.0% |
| !! | ACACCAACTTACTTTTATGA+AGG | - | chr5_4:10571247-10571266 | Msa0836850:intron | 30.0% |
| GGATCCTACCTAATATATAT+AGG | + | chr5_4:10571367-10571386 | None:intergenic | 30.0% | |
| !! | TGACTTATATTTGGTGTCAA+CGG | + | chr5_4:10571388-10571407 | None:intergenic | 30.0% |
| TAGATTGAATGGTTGAGATT+TGG | + | chr5_4:10571422-10571441 | None:intergenic | 30.0% | |
| ! | CAATCCAATGGTCTAAAATA+TGG | - | chr5_4:10571444-10571463 | Msa0836850:intron | 30.0% |
| !! | GTTTCCATATTTTAGACCAT+TGG | + | chr5_4:10571451-10571470 | None:intergenic | 30.0% |
| !! | TCAAGAATGGATTTTCTTGA+TGG | + | chr5_4:10571715-10571734 | None:intergenic | 30.0% |
| ! | TTTAGGTTTGAAAGGATTTG+TGG | + | chr5_4:10571848-10571867 | None:intergenic | 30.0% |
| !! | AAGTGTTGCTGAATACATTT+TGG | - | chr5_4:10571986-10572005 | Msa0836850:intron | 30.0% |
| TCATATGTATCGTGATTTCT+AGG | - | chr5_4:10572223-10572242 | Msa0836850:intron | 30.0% | |
| TAAGAAACATTGTGAACCAA+TGG | - | chr5_4:10572331-10572350 | Msa0836850:intron | 30.0% | |
| GAAATTAGTGTGAATGAGAT+AGG | - | chr5_4:10572929-10572948 | Msa0836850:CDS | 30.0% | |
| TGGATGCATTAAGATTTAAG+TGG | - | chr5_4:10573198-10573217 | Msa0836850:intron | 30.0% | |
| GGATGCATTAAGATTTAAGT+GGG | - | chr5_4:10573199-10573218 | Msa0836850:intron | 30.0% | |
| GATGCATTAAGATTTAAGTG+GGG | - | chr5_4:10573200-10573219 | Msa0836850:intron | 30.0% | |
| !! | CATAGGAATTTTGAAAGCTT+TGG | - | chr5_4:10573302-10573321 | Msa0836850:intron | 30.0% |
| !! | TTTGAAAGCTTTGGAACTTA+AGG | - | chr5_4:10573311-10573330 | Msa0836850:intron | 30.0% |
| CTTAAGGTAGAAGAATTGAA+AGG | - | chr5_4:10573327-10573346 | Msa0836850:intron | 30.0% | |
| AAAGGTTGCAATGATTCATT+GGG | - | chr5_4:10573345-10573364 | Msa0836850:CDS | 30.0% | |
| AATCTCTCTATCTCTTCTTT+GGG | + | chr5_4:10573375-10573394 | None:intergenic | 30.0% | |
| TAATCTCTCTATCTCTTCTT+TGG | + | chr5_4:10573376-10573395 | None:intergenic | 30.0% | |
| GAAGCAAATTGAGAAGATTA+AGG | - | chr5_4:10573488-10573507 | Msa0836850:CDS | 30.0% | |
| ! | AATTTTGTGGCGCAAAATGA+TGG | - | chr5_4:10568520-10568539 | Msa0836850:CDS | 35.0% |
| TGTTGAAGGACATAGTACTA+AGG | - | chr5_4:10568551-10568570 | Msa0836850:CDS | 35.0% | |
| CAAGTATTCTAGTACTATGG+AGG | - | chr5_4:10568593-10568612 | Msa0836850:CDS | 35.0% | |
| ! | TCCAACATGCTTAGACTTTT+CGG | - | chr5_4:10568748-10568767 | Msa0836850:intron | 35.0% |
| TTTGCATTAGAAGTAGAGGA+AGG | + | chr5_4:10568790-10568809 | None:intergenic | 35.0% | |
| AAATCAAGCCTCAACAAGTT+TGG | + | chr5_4:10569052-10569071 | None:intergenic | 35.0% | |
| GGACTGAAAAATCAATAAGG+TGG | - | chr5_4:10569116-10569135 | Msa0836850:intron | 35.0% | |
| AAAGATTGGCATGTGTTTGT+GGG | - | chr5_4:10569160-10569179 | Msa0836850:intron | 35.0% | |
| TAATACAACCAATTCGAGAG+GGG | + | chr5_4:10569303-10569322 | None:intergenic | 35.0% | |
| TGTTCAATAGGTATAGTAGC+TGG | - | chr5_4:10569338-10569357 | Msa0836850:intron | 35.0% | |
| ! | TCGTTTTCCATTTACAGGAA+GGG | + | chr5_4:10569369-10569388 | None:intergenic | 35.0% |
| ! | TATCCTCGTTTTCCATTTAC+AGG | + | chr5_4:10569374-10569393 | None:intergenic | 35.0% |
| CTAACACTTCATTAGTCCAA+TGG | + | chr5_4:10569447-10569466 | None:intergenic | 35.0% | |
| !!! | ACCCATTTTAGTTTAAGTGG+TGG | - | chr5_4:10569467-10569486 | Msa0836850:intron | 35.0% |
| CCCACCACTTAAACTAAAAT+GGG | + | chr5_4:10569471-10569490 | None:intergenic | 35.0% | |
| !!! | CCCATTTTAGTTTAAGTGGT+GGG | - | chr5_4:10569468-10569487 | Msa0836850:intron | 35.0% |
| !!! | CCATTTTAGTTTAAGTGGTG+GGG | - | chr5_4:10569469-10569488 | Msa0836850:intron | 35.0% |
| !!! | ACCTTGTGTTTGTTTTTTGC+TGG | + | chr5_4:10569871-10569890 | None:intergenic | 35.0% |
| ! | AAGAGCACAAAGAAAAAACC+AGG | - | chr5_4:10569942-10569961 | Msa0836850:intron | 35.0% |
| ATAGAGCTAAACTCTTAGCT+TGG | + | chr5_4:10570131-10570150 | None:intergenic | 35.0% | |
| CGGGAATGAGAAAAAACATA+TGG | - | chr5_4:10570293-10570312 | Msa0836850:intron | 35.0% | |
| AAAAACATATGGGAGAAGAG+TGG | - | chr5_4:10570304-10570323 | Msa0836850:intron | 35.0% | |
| ! | CTTAAAGCAATTTTGGACGT+TGG | + | chr5_4:10570761-10570780 | None:intergenic | 35.0% |
| ! | TGGTGTGCTTAAAGCAATTT+TGG | + | chr5_4:10570768-10570787 | None:intergenic | 35.0% |
| CTCTCAGTTTATTTGAACAG+TGG | + | chr5_4:10570818-10570837 | None:intergenic | 35.0% | |
| GCACCTTCATAAAAGTAAGT+TGG | + | chr5_4:10571253-10571272 | None:intergenic | 35.0% | |
| TTGTTAAAAGACACCACCAA+AGG | - | chr5_4:10571324-10571343 | Msa0836850:intron | 35.0% | |
| TGTTAAAAGACACCACCAAA+GGG | - | chr5_4:10571325-10571344 | Msa0836850:intron | 35.0% | |
| CCATGAAAGAAGAAGTTTCA+AGG | + | chr5_4:10571784-10571803 | None:intergenic | 35.0% | |
| CCTTGAAACTTCTTCTTTCA+TGG | - | chr5_4:10571781-10571800 | Msa0836850:intron | 35.0% | |
| !!! | TTTTAAGTTTGTGGATGACC+AGG | + | chr5_4:10571811-10571830 | None:intergenic | 35.0% |
| ! | TTTGCGATTGAATTGACTCT+AGG | + | chr5_4:10572091-10572110 | None:intergenic | 35.0% |
| ACGTGGAACATAAAGTATAG+AGG | + | chr5_4:10572312-10572331 | None:intergenic | 35.0% | |
| !!! | TAAGTCTTTTGACTTACACC+TGG | - | chr5_4:10572385-10572404 | Msa0836850:intron | 35.0% |
| ACAAATATCTACCGCAACAA+AGG | - | chr5_4:10572863-10572882 | Msa0836850:CDS | 35.0% | |
| ATAATTGGGAACCTTTGTTG+CGG | + | chr5_4:10572877-10572896 | None:intergenic | 35.0% | |
| AACTACAGATCATAGTTCCT+TGG | - | chr5_4:10573077-10573096 | Msa0836850:intron | 35.0% | |
| AAATCTTAATGCATCCACCA+TGG | + | chr5_4:10573195-10573214 | None:intergenic | 35.0% | |
| GAAAGGTTGCAATGATTCAT+TGG | - | chr5_4:10573344-10573363 | Msa0836850:CDS | 35.0% | |
| !!! | TGAAGCTTTTGTTGGTAATG+CGG | + | chr5_4:10573468-10573487 | None:intergenic | 35.0% |
| !!! | TTTGCTTCTGAAGCTTTTGT+TGG | + | chr5_4:10573476-10573495 | None:intergenic | 35.0% |
| TGAGATTAAAAGGGATGTCA+TGG | - | chr5_4:10573536-10573555 | Msa0836850:CDS | 35.0% | |
| TGATGGCAATGACATGTTGA+AGG | - | chr5_4:10568537-10568556 | Msa0836850:CDS | 40.0% | |
| TGAAGGACATAGTACTAAGG+AGG | - | chr5_4:10568554-10568573 | Msa0836850:CDS | 40.0% | |
| GTATTCTAGTACTATGGAGG+AGG | - | chr5_4:10568596-10568615 | Msa0836850:CDS | 40.0% | |
| ACTTCCTCACTCTTATCTCA+TGG | - | chr5_4:10568689-10568708 | Msa0836850:CDS | 40.0% | |
| GTCTAAGCATGTTGGAATAG+AGG | + | chr5_4:10568744-10568763 | None:intergenic | 40.0% | |
| TTAGAAGTAGAGGAAGGAGA+AGG | + | chr5_4:10568784-10568803 | None:intergenic | 40.0% | |
| GTAGACTAACACTGATACGA+AGG | - | chr5_4:10568830-10568849 | Msa0836850:intron | 40.0% | |
| !! | GTTGGTGCTATGTGCTAAAT+AGG | - | chr5_4:10568983-10569002 | Msa0836850:intron | 40.0% |
| AGAAGAAACAGCTGTGAGAA+TGG | - | chr5_4:10569075-10569094 | Msa0836850:intron | 40.0% | |
| ATCAATAAGGTGGTTGTTCG+TGG | - | chr5_4:10569126-10569145 | Msa0836850:intron | 40.0% | |
| GAAAGATTGGCATGTGTTTG+TGG | - | chr5_4:10569159-10569178 | Msa0836850:intron | 40.0% | |
| AAATGTTAGGAAGTCCATGC+AGG | + | chr5_4:10569224-10569243 | None:intergenic | 40.0% | |
| ! | ACTTTTTACCCCTCTCGAAT+TGG | - | chr5_4:10569292-10569311 | Msa0836850:intron | 40.0% |
| ! | CTCGTTTTCCATTTACAGGA+AGG | + | chr5_4:10569370-10569389 | None:intergenic | 40.0% |
| CTTCCTGTAAATGGAAAACG+AGG | - | chr5_4:10569368-10569387 | Msa0836850:intron | 40.0% | |
| GGATAAGATCAAGAGATGCA+TGG | - | chr5_4:10569389-10569408 | Msa0836850:intron | 40.0% | |
| CCCCACCACTTAAACTAAAA+TGG | + | chr5_4:10569472-10569491 | None:intergenic | 40.0% | |
| !!! | TTTGTTTTGGCTTTTGCTGG+TGG | + | chr5_4:10569814-10569833 | None:intergenic | 40.0% |
| !!! | CGGTTTTTTTAGTCCGTTTG+GGG | + | chr5_4:10569838-10569857 | None:intergenic | 40.0% |
| !!! | GCGGTTTTTTTAGTCCGTTT+GGG | + | chr5_4:10569839-10569858 | None:intergenic | 40.0% |
| !!! | TGCGGTTTTTTTAGTCCGTT+TGG | + | chr5_4:10569840-10569859 | None:intergenic | 40.0% |
| !!! | TTTTTGCTGGCCTTTGTTTG+CGG | + | chr5_4:10569858-10569877 | None:intergenic | 40.0% |
| GCCAGCAAAAAACAAACACA+AGG | - | chr5_4:10569867-10569886 | Msa0836850:intron | 40.0% | |
| TTTGTGCTCTTTGTCTTTGC+AGG | + | chr5_4:10569933-10569952 | None:intergenic | 40.0% | |
| AAAGAAAAAACCAGGAAGCC+AGG | - | chr5_4:10569950-10569969 | Msa0836850:intron | 40.0% | |
| !! | TTTGAGGTGGTGGTTTTTCT+GGG | + | chr5_4:10570022-10570041 | None:intergenic | 40.0% |
| ! | TTCCTGCACTTTTCATGAGT+GGG | + | chr5_4:10570079-10570098 | None:intergenic | 40.0% |
| ! | CTAAACTCTTAGCTTGGAAG+TGG | + | chr5_4:10570125-10570144 | None:intergenic | 40.0% |
| AATGACAAACTCTTAGCCTG+TGG | + | chr5_4:10570157-10570176 | None:intergenic | 40.0% | |
| GCATGAGAATAGCAAAGGAT+GGG | + | chr5_4:10570410-10570429 | None:intergenic | 40.0% | |
| CTTATGCGTGGATTCTATGA+TGG | + | chr5_4:10570538-10570557 | None:intergenic | 40.0% | |
| !! | TAGGAGTGTTTATGGTGTCA+TGG | + | chr5_4:10570603-10570622 | None:intergenic | 40.0% |
| AGTGGTGAAGTGAAGAATGA+AGG | - | chr5_4:10570659-10570678 | Msa0836850:intron | 40.0% | |
| CATTTCACCAAAGGTTTGGA+TGG | + | chr5_4:10570795-10570814 | None:intergenic | 40.0% | |
| ! | TTTTGTTACAAGCCACCCTT+TGG | + | chr5_4:10571343-10571362 | None:intergenic | 40.0% |
| TAGCCAATAAAATCTCAGCC+TGG | - | chr5_4:10571585-10571604 | Msa0836850:intron | 40.0% | |
| ! | TAAGTTGAGAAAGGGGAAAG+AGG | - | chr5_4:10572270-10572289 | Msa0836850:intron | 40.0% |
| GGTTCACAATGTTTCTTACG+TGG | + | chr5_4:10572329-10572348 | None:intergenic | 40.0% | |
| ! | ACTTGTTGGCTAAGCTAAAG+TGG | - | chr5_4:10573015-10573034 | Msa0836850:intron | 40.0% |
| TGAACTATGAACTCAAGCCA+AGG | + | chr5_4:10573097-10573116 | None:intergenic | 40.0% | |
| AGACAAACACAAGAGTTCCA+TGG | - | chr5_4:10573175-10573194 | Msa0836850:intron | 40.0% | |
| TTAAGATTTAAGTGGGGCTG+CGG | - | chr5_4:10573206-10573225 | Msa0836850:intron | 40.0% | |
| !!! | GAAGCTTTTGTTGGTAATGC+GGG | + | chr5_4:10573467-10573486 | None:intergenic | 40.0% |
| AGGACATAGTACTAAGGAGG+AGG | - | chr5_4:10568557-10568576 | Msa0836850:CDS | 45.0% | |
| TAATTGCGGCAACAGCAACA+TGG | - | chr5_4:10568641-10568660 | Msa0836850:CDS | 45.0% | |
| AATTGCGGCAACAGCAACAT+GGG | - | chr5_4:10568642-10568661 | Msa0836850:CDS | 45.0% | |
| TGAGCCATGAGATAAGAGTG+AGG | + | chr5_4:10568696-10568715 | None:intergenic | 45.0% | |
| GCCGAAAAGTCTAAGCATGT+TGG | + | chr5_4:10568752-10568771 | None:intergenic | 45.0% | |
| TCAAGCCTCAACAAGTTTGG+TGG | + | chr5_4:10569049-10569068 | None:intergenic | 45.0% | |
| GCATGTGTTTGTGGGAGTTA+TGG | - | chr5_4:10569168-10569187 | Msa0836850:intron | 45.0% | |
| GGTATGACCCTTCCTGTAAA+TGG | - | chr5_4:10569359-10569378 | Msa0836850:intron | 45.0% | |
| AGATCAAGAGATGCATGGAG+TGG | - | chr5_4:10569394-10569413 | Msa0836850:intron | 45.0% | |
| ! | AGATGCATGGAGTGGTTTGT+TGG | - | chr5_4:10569402-10569421 | Msa0836850:intron | 45.0% |
| ! | ATGTGTCTAGAGCTCTCCTT+TGG | - | chr5_4:10569643-10569662 | Msa0836850:intron | 45.0% |
| !!! | GGCTTTGTTTTGGCTTTTGC+TGG | + | chr5_4:10569817-10569836 | None:intergenic | 45.0% |
| AGCCAAAACAAAGCCCCAAA+CGG | - | chr5_4:10569822-10569841 | Msa0836850:intron | 45.0% | |
| ! | GTGGGCTGTTGATATTGGAT+GGG | + | chr5_4:10569897-10569916 | None:intergenic | 45.0% |
| ! | TGTGGGCTGTTGATATTGGA+TGG | + | chr5_4:10569898-10569917 | None:intergenic | 45.0% |
| !! | GTCTTTGCAGGTGTTTTTGC+AGG | + | chr5_4:10569921-10569940 | None:intergenic | 45.0% |
| AAAAAACCAGGAAGCCAGGT+CGG | - | chr5_4:10569954-10569973 | Msa0836850:intron | 45.0% | |
| !!! | TGGTTTTTCTGGGGTTGTGA+GGG | + | chr5_4:10570012-10570031 | None:intergenic | 45.0% |
| !! | TTGAGGTGGTGGTTTTTCTG+GGG | + | chr5_4:10570021-10570040 | None:intergenic | 45.0% |
| !! | GTTTGAGGTGGTGGTTTTTC+TGG | + | chr5_4:10570023-10570042 | None:intergenic | 45.0% |
| ! | GTTCCTGCACTTTTCATGAG+TGG | + | chr5_4:10570080-10570099 | None:intergenic | 45.0% |
| !! | AGTTTAGCTCTATCCACCAC+AGG | - | chr5_4:10570138-10570157 | Msa0836850:intron | 45.0% |
| CACGCATGTGTATTTCTCAG+CGG | + | chr5_4:10570247-10570266 | None:intergenic | 45.0% | |
| !! | CTCACGCTCGACTATTTTGA+CGG | - | chr5_4:10570273-10570292 | Msa0836850:intron | 45.0% |
| !!! | TCACGCTCGACTATTTTGAC+GGG | - | chr5_4:10570274-10570293 | Msa0836850:intron | 45.0% |
| CGCATGAGAATAGCAAAGGA+TGG | + | chr5_4:10570411-10570430 | None:intergenic | 45.0% | |
| AGGACGCATGAGAATAGCAA+AGG | + | chr5_4:10570415-10570434 | None:intergenic | 45.0% | |
| TGCGTGGATTCTATGATGGT+CGG | + | chr5_4:10570534-10570553 | None:intergenic | 45.0% | |
| ATTGCTTTGCAGCTTATGCG+TGG | + | chr5_4:10570550-10570569 | None:intergenic | 45.0% | |
| CCAAAGGTTTGGATGGTTTG+TGG | + | chr5_4:10570788-10570807 | None:intergenic | 45.0% | |
| CCACAAACCATCCAAACCTT+TGG | - | chr5_4:10570785-10570804 | Msa0836850:intron | 45.0% | |
| GTGGCATTTCACCAAAGGTT+TGG | + | chr5_4:10570799-10570818 | None:intergenic | 45.0% | |
| GAACAGTGGCATTTCACCAA+AGG | + | chr5_4:10570804-10570823 | None:intergenic | 45.0% | |
| TAAAAGACACCACCAAAGGG+TGG | - | chr5_4:10571328-10571347 | Msa0836850:intron | 45.0% | |
| CAATAAAATCTCAGCCTGGC+CGG | - | chr5_4:10571589-10571608 | Msa0836850:intron | 45.0% | |
| TTCTTCTTTCATGGATCGCC+TGG | - | chr5_4:10571790-10571809 | Msa0836850:intron | 45.0% | |
| ! | TGACTTACACCTGGTGTCAA+TGG | - | chr5_4:10572394-10572413 | Msa0836850:intron | 45.0% |
| !! | AAAGAGAAGCACTCACGTGT+CGG | + | chr5_4:10572757-10572776 | None:intergenic | 45.0% |
| CAAACACAAGAGTTCCATGG+TGG | - | chr5_4:10573178-10573197 | Msa0836850:intron | 45.0% | |
| TCCACTCTTGAAACGAGCAT+AGG | - | chr5_4:10573285-10573304 | Msa0836850:intron | 45.0% | |
| TCCTATGCTCGTTTCAAGAG+TGG | + | chr5_4:10573289-10573308 | None:intergenic | 45.0% | |
| GAGAGATTAGAGACACTCGT+AGG | - | chr5_4:10573387-10573406 | Msa0836850:CDS | 45.0% | |
| !!! | ATTTGTAATTTTTTTTTTAA+TGG | - | chr5_4:10569693-10569712 | Msa0836850:intron | 5.0% |
| !!! | AAAAATAATAATTAGTTTTT+AGG | + | chr5_4:10570622-10570641 | None:intergenic | 5.0% |
| !!! | TATTTTTATTTTTTTTTTGA+CGG | - | chr5_4:10572187-10572206 | Msa0836850:intron | 5.0% |
| !! | AACAGCAACATGGGTGTCGA+TGG | - | chr5_4:10568651-10568670 | Msa0836850:CDS | 50.0% |
| !! | GGGAACCACCAAACTTGTTG+AGG | - | chr5_4:10569041-10569060 | Msa0836850:intron | 50.0% |
| TGGCAAAGACAGTTCGAGCA+TGG | - | chr5_4:10569095-10569114 | Msa0836850:intron | 50.0% | |
| GGGAGTTATGGCTACGTTGT+TGG | - | chr5_4:10569180-10569199 | Msa0836850:intron | 50.0% | |
| CTCTTATGTAGGAGCCTGCA+TGG | - | chr5_4:10569207-10569226 | Msa0836850:intron | 50.0% | |
| GGGCTTCTCTTGAAGTCTTG+TGG | + | chr5_4:10569773-10569792 | None:intergenic | 50.0% | |
| !!! | GTCCGTTTGGGGCTTTGTTT+TGG | + | chr5_4:10569827-10569846 | None:intergenic | 50.0% |
| ! | CAGGTGTGGGCTGTTGATAT+TGG | + | chr5_4:10569902-10569921 | None:intergenic | 50.0% |
| !! | GCAGGTGTTTTTGCAGGTGT+GGG | + | chr5_4:10569915-10569934 | None:intergenic | 50.0% |
| !! | TGCAGGTGTTTTTGCAGGTG+TGG | + | chr5_4:10569916-10569935 | None:intergenic | 50.0% |
| !!! | GTTTTTCTGGGGTTGTGAGG+GGG | + | chr5_4:10570010-10570029 | None:intergenic | 50.0% |
| !!! | GGTTTTTCTGGGGTTGTGAG+GGG | + | chr5_4:10570011-10570030 | None:intergenic | 50.0% |
| !!! | GTGGTTTTTCTGGGGTTGTG+AGG | + | chr5_4:10570013-10570032 | None:intergenic | 50.0% |
| ! | CTGCACTTTTCATGAGTGGG+AGG | + | chr5_4:10570076-10570095 | None:intergenic | 50.0% |
| ! | CTCCCACTCATGAAAAGTGC+AGG | - | chr5_4:10570074-10570093 | Msa0836850:intron | 50.0% |
| ! | TGAAAAGTGCAGGAACTGCC+AGG | - | chr5_4:10570084-10570103 | Msa0836850:intron | 50.0% |
| ! | CTTAGCTTGGAAGTGGTTCC+TGG | + | chr5_4:10570118-10570137 | None:intergenic | 50.0% |
| GACAAACTCTTAGCCTGTGG+TGG | + | chr5_4:10570154-10570173 | None:intergenic | 50.0% | |
| TGTTACAAGCCACCCTTTGG+TGG | + | chr5_4:10571340-10571359 | None:intergenic | 50.0% | |
| ! | CGGCCAGGCTGAGATTTTAT+TGG | + | chr5_4:10571591-10571610 | None:intergenic | 50.0% |
| AGGCATGATCCATTGACACC+AGG | + | chr5_4:10572406-10572425 | None:intergenic | 50.0% | |
| ! | ATCGGTAGGGTTTGAGGTGG+TGG | + | chr5_4:10570032-10570051 | None:intergenic | 55.0% |
| AACCCTACCGATGCCAGCAA+AGG | - | chr5_4:10570040-10570059 | Msa0836850:intron | 55.0% | |
| !! | GTCCTTTGCTGGCATCGGTA+GGG | + | chr5_4:10570045-10570064 | None:intergenic | 55.0% |
| CTACCGATGCCAGCAAAGGA+CGG | - | chr5_4:10570044-10570063 | Msa0836850:intron | 55.0% | |
| TACCGATGCCAGCAAAGGAC+GGG | - | chr5_4:10570045-10570064 | Msa0836850:intron | 55.0% | |
| AACCCGTCCTTTGCTGGCAT+CGG | + | chr5_4:10570050-10570069 | None:intergenic | 55.0% | |
| AACTGCCAGGACACTTAGCC+AGG | - | chr5_4:10570097-10570116 | Msa0836850:intron | 55.0% | |
| TGGTTCCTGGCTAAGTGTCC+TGG | + | chr5_4:10570105-10570124 | None:intergenic | 55.0% | |
| TCAGCCTGGCCGGAAATCAT+GGG | - | chr5_4:10571599-10571618 | Msa0836850:intron | 55.0% | |
| ACCCACCACCCCATGATTTC+CGG | + | chr5_4:10571611-10571630 | None:intergenic | 55.0% | |
| AGATTTAAGTGGGGCTGCGG+CGG | - | chr5_4:10573209-10573228 | Msa0836850:intron | 55.0% | |
| ACCAGGAAGCCAGGTCGGAA+AGG | - | chr5_4:10569959-10569978 | Msa0836850:intron | 60.0% | |
| TCCTTTCCGACCTGGCTTCC+TGG | + | chr5_4:10569963-10569982 | None:intergenic | 60.0% | |
| AGGAAGCCAGGTCGGAAAGG+AGG | - | chr5_4:10569962-10569981 | Msa0836850:intron | 60.0% | |
| AAGCCAGGTCGGAAAGGAGG+AGG | - | chr5_4:10569965-10569984 | Msa0836850:intron | 60.0% | |
| TTGCCTCCTCCTTTCCGACC+TGG | + | chr5_4:10569971-10569990 | None:intergenic | 60.0% | |
| ! | TCTGGGGTTGTGAGGGGGTT+GGG | + | chr5_4:10570005-10570024 | None:intergenic | 60.0% |
| !! | TTCTGGGGTTGTGAGGGGGT+TGG | + | chr5_4:10570006-10570025 | None:intergenic | 60.0% |
| !! | GGCATCGGTAGGGTTTGAGG+TGG | + | chr5_4:10570035-10570054 | None:intergenic | 60.0% |
| !! | GCTGGCATCGGTAGGGTTTG+AGG | + | chr5_4:10570038-10570057 | None:intergenic | 60.0% |
| !! | CGTCCTTTGCTGGCATCGGT+AGG | + | chr5_4:10570046-10570065 | None:intergenic | 60.0% |
| AGGTGCAACCCGTCCTTTGC+TGG | + | chr5_4:10570056-10570075 | None:intergenic | 60.0% | |
| CTCAGCCTGGCCGGAAATCA+TGG | - | chr5_4:10571598-10571617 | Msa0836850:intron | 60.0% | |
| CAGCCTGGCCGGAAATCATG+GGG | - | chr5_4:10571600-10571619 | Msa0836850:intron | 60.0% | |
| GCCGGAAATCATGGGGTGGT+GGG | - | chr5_4:10571607-10571626 | Msa0836850:intron | 60.0% | |
| GATACAGAGGCAGACACGCG+TGG | - | chr5_4:10572058-10572077 | Msa0836850:intron | 60.0% | |
| GATTTAAGTGGGGCTGCGGC+GGG | - | chr5_4:10573210-10573229 | Msa0836850:intron | 60.0% | |
| GTTGTGAGGGGGTTGGGTGG+GGG | + | chr5_4:10569999-10570018 | None:intergenic | 65.0% | |
| GGTTGTGAGGGGGTTGGGTG+GGG | + | chr5_4:10570000-10570019 | None:intergenic | 65.0% | |
| GGGTTGTGAGGGGGTTGGGT+GGG | + | chr5_4:10570001-10570020 | None:intergenic | 65.0% | |
| CCACCCCATGATTTCCGGCC+AGG | + | chr5_4:10571606-10571625 | None:intergenic | 65.0% | |
| CCTGGCCGGAAATCATGGGG+TGG | - | chr5_4:10571603-10571622 | Msa0836850:intron | 65.0% | |
| GGCCGGAAATCATGGGGTGG+TGG | - | chr5_4:10571606-10571625 | Msa0836850:intron | 65.0% | |
| GGGGTTGTGAGGGGGTTGGG+TGG | + | chr5_4:10570002-10570021 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 10568508 | 10573560 | 10568508 | ID=Msa0836850;Name=Msa0836850 |
| chr5_4 | mRNA | 10568508 | 10573560 | 10568508 | ID=Msa0836850-mRNA-1;Parent=Msa0836850;Name=Msa0836850-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0|0|0.8|0|0|5|0|228 |
| chr5_4 | exon | 10573331 | 10573560 | 10573331 | ID=Msa0836850-mRNA-1:exon:4663;Parent=Msa0836850-mRNA-1 |
| chr5_4 | exon | 10572815 | 10573026 | 10572815 | ID=Msa0836850-mRNA-1:exon:4662;Parent=Msa0836850-mRNA-1 |
| chr5_4 | exon | 10572709 | 10572714 | 10572709 | ID=Msa0836850-mRNA-1:exon:4661;Parent=Msa0836850-mRNA-1 |
| chr5_4 | exon | 10570126 | 10570133 | 10570126 | ID=Msa0836850-mRNA-1:exon:4660;Parent=Msa0836850-mRNA-1 |
| chr5_4 | exon | 10568508 | 10568735 | 10568508 | ID=Msa0836850-mRNA-1:exon:4659;Parent=Msa0836850-mRNA-1 |
| chr5_4 | CDS | 10573331 | 10573560 | 10573331 | ID=Msa0836850-mRNA-1:cds;Parent=Msa0836850-mRNA-1 |
| chr5_4 | CDS | 10572815 | 10573026 | 10572815 | ID=Msa0836850-mRNA-1:cds;Parent=Msa0836850-mRNA-1 |
| chr5_4 | CDS | 10572709 | 10572714 | 10572709 | ID=Msa0836850-mRNA-1:cds;Parent=Msa0836850-mRNA-1 |
| chr5_4 | CDS | 10570126 | 10570133 | 10570126 | ID=Msa0836850-mRNA-1:cds;Parent=Msa0836850-mRNA-1 |
| chr5_4 | CDS | 10568508 | 10568735 | 10568508 | ID=Msa0836850-mRNA-1:cds;Parent=Msa0836850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
