AlfalfaGEDB | Msa1307210

M. sativa cultivar zhongmu-4 / Msa1307210

KEGG: K13422
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1307210	sp\|Q39204\|MYC2_ARATH	54.082	196	82	4	35	227	433	623	7.38e-59	198

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1307210	A0A072TYH1	94.348	230	11	1	1	228	235	464	7.65e-154	444

TFs/TRs:

Gene ID	Type	Classification
Msa1307210	TF	bHLH

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007990	Msa1307210	0.816030	6.823794e-52	-8.615850e-47
Msa0011500	Msa1307210	0.830315	3.146500e-55	-8.615850e-47
Msa0022550	Msa1307210	0.806750	7.067152e-50	-8.615850e-47
Msa0042550	Msa1307210	0.812216	4.739145e-51	-8.615850e-47
Msa0045790	Msa1307210	0.806057	9.893442e-50	-8.615850e-47
Msa0046160	Msa1307210	0.803760	2.988442e-49	-8.615850e-47
Msa0050820	Msa1307210	0.804855	1.767706e-49	-8.615850e-47
Msa0060400	Msa1307210	0.807200	5.677402e-50	-8.615850e-47
Msa0074240	Msa1307210	0.804040	2.614254e-49	-8.615850e-47
Msa0087220	Msa1307210	0.800756	1.241140e-48	-8.615850e-47
Msa0087470	Msa1307210	0.800213	1.601552e-48	-8.615850e-47
Msa0616760	Msa1307210	0.825298	5.059641e-54	-8.615850e-47
Msa0626720	Msa1307210	0.800359	1.495816e-48	-8.615850e-47
Msa0639430	Msa1307210	0.805946	1.044361e-49	-8.615850e-47
Msa0659510	Msa1307210	0.804085	2.558897e-49	-8.615850e-47
Msa0662340	Msa1307210	0.809168	2.161917e-50	-8.615850e-47
Msa0662570	Msa1307210	0.826490	2.636417e-54	-8.615850e-47
Msa0664850	Msa1307210	0.807343	5.295488e-50	-8.615850e-47
Msa0667050	Msa1307210	0.801848	7.417618e-49	-8.615850e-47
Msa0677920	Msa1307210	0.805012	1.639107e-49	-8.615850e-47
Msa0682330	Msa1307210	0.817928	2.556867e-52	-8.615850e-47
Msa0683510	Msa1307210	0.803716	3.052256e-49	-8.615850e-47
Msa0691050	Msa1307210	0.804543	2.053534e-49	-8.615850e-47
Msa0697030	Msa1307210	0.802219	6.223230e-49	-8.615850e-47
Msa0711830	Msa1307210	0.813814	2.115520e-51	-8.615850e-47
Msa0713640	Msa1307210	0.807625	4.614193e-50	-8.615850e-47
Msa0715420	Msa1307210	0.814640	1.389797e-51	-8.615850e-47
Msa0727710	Msa1307210	0.818124	2.309292e-52	-8.615850e-47
Msa0731940	Msa1307210	0.811532	6.678072e-51	-8.615850e-47
Msa0736960	Msa1307210	0.804509	2.088164e-49	-8.615850e-47
Msa0737570	Msa1307210	0.800178	1.627867e-48	-8.615850e-47
Msa0750240	Msa1307210	0.816519	5.302780e-52	-8.615850e-47
Msa0764130	Msa1307210	-0.803354	3.628949e-49	-8.615850e-47
Msa0767300	Msa1307210	0.806896	6.584340e-50	-8.615850e-47
Msa0796920	Msa1307210	0.808572	2.900084e-50	-8.615850e-47
Msa0800770	Msa1307210	0.808805	2.585537e-50	-8.615850e-47
Msa0810220	Msa1307210	0.802299	5.993349e-49	-8.615850e-47
Msa0816710	Msa1307210	0.814326	1.631304e-51	-8.615850e-47
Msa0830510	Msa1307210	0.824271	8.836870e-54	-8.615850e-47
Msa0834880	Msa1307210	0.816863	4.440631e-52	-8.615850e-47
Msa0836850	Msa1307210	0.848847	4.721277e-60	-8.615850e-47
Msa0838930	Msa1307210	0.805630	1.216529e-49	-8.615850e-47
Msa0123100	Msa1307210	0.801348	9.393997e-49	-8.615850e-47
Msa0149300	Msa1307210	0.817674	2.918214e-52	-8.615850e-47
Msa0160130	Msa1307210	0.803214	3.878210e-49	-8.615850e-47
Msa0173390	Msa1307210	0.807910	4.012142e-50	-8.615850e-47
Msa0178510	Msa1307210	0.802605	5.183736e-49	-8.615850e-47
Msa0188150	Msa1307210	0.823412	1.404751e-53	-8.615850e-47
Msa0220290	Msa1307210	-0.830544	2.766584e-55	-8.615850e-47
Msa0225860	Msa1307210	0.802326	5.915010e-49	-8.615850e-47
Msa1234910	Msa1307210	0.801558	8.506880e-49	-8.615850e-47
Msa1251930	Msa1307210	0.811027	8.597226e-51	-8.615850e-47
Msa1257300	Msa1307210	0.802013	6.862977e-49	-8.615850e-47
Msa1277150	Msa1307210	0.813606	2.351396e-51	-8.615850e-47
Msa1279420	Msa1307210	0.810630	1.047639e-50	-8.615850e-47
Msa1298370	Msa1307210	0.805050	1.609330e-49	-8.615850e-47
Msa1307210	Msa1321050	0.848206	7.103351e-60	-8.615850e-47
Msa1307210	Msa1325060	0.807921	3.991654e-50	-8.615850e-47
Msa1307210	Msa1328710	0.800042	1.734709e-48	-8.615850e-47
Msa1307210	Msa1341520	0.815850	7.484369e-52	-8.615850e-47
Msa1307210	Msa1341570	0.822608	2.162456e-53	-8.615850e-47
Msa1307210	Msa1372150	0.805439	1.334391e-49	-8.615850e-47
Msa1307210	Msa1386040	0.817228	3.677184e-52	-8.615850e-47
Msa1307210	Msa1398540	0.810991	8.751573e-51	-8.615850e-47
Msa1307210	Msa1398890	0.825101	5.631590e-54	-8.615850e-47
Msa1307210	Msa1408620	-0.818533	1.865300e-52	-8.615850e-47
Msa1307210	Msa1410210	0.800193	1.616864e-48	-8.615850e-47
Msa1307210	Msa1413610	0.814510	1.485285e-51	-8.615850e-47
Msa1307210	Msa1417360	-0.815320	9.821086e-52	-8.615850e-47
Msa1307210	Msa1436480	0.803370	3.601671e-49	-8.615850e-47
Msa1307210	Msa1440740	0.802545	5.332254e-49	-8.615850e-47
Msa1307210	Msa1441580	0.808245	3.404928e-50	-8.615850e-47
Msa1307210	Msa1446780	0.802535	5.357340e-49	-8.615850e-47
Msa1307210	Msa1457430	0.802009	6.874562e-49	-8.615850e-47
Msa1307210	Msa1466540	0.810696	1.013770e-50	-8.615850e-47
Msa0378720	Msa1307210	0.809168	2.162462e-50	-8.615850e-47
Msa0422280	Msa1307210	0.810877	9.264773e-51	-8.615850e-47
Msa0437560	Msa1307210	0.811459	6.927803e-51	-8.615850e-47
Msa0440440	Msa1307210	0.819607	1.062904e-52	-8.615850e-47
Msa0981850	Msa1307210	0.808335	3.258082e-50	-8.615850e-47
Msa1000170	Msa1307210	0.810054	1.394825e-50	-8.615850e-47
Msa1000190	Msa1307210	0.804043	2.610684e-49	-8.615850e-47
Msa1000290	Msa1307210	0.806858	6.708175e-50	-8.615850e-47
Msa1000370	Msa1307210	0.820204	7.759865e-53	-8.615850e-47
Msa1004840	Msa1307210	0.801075	1.068275e-48	-8.615850e-47
Msa1024740	Msa1307210	0.843738	1.165060e-58	-8.615850e-47
Msa1031930	Msa1307210	0.815349	9.676479e-52	-8.615850e-47
Msa1035960	Msa1307210	0.806943	6.435206e-50	-8.615850e-47
Msa1038080	Msa1307210	0.808505	2.996265e-50	-8.615850e-47
Msa1063500	Msa1307210	0.807567	4.744760e-50	-8.615850e-47
Msa1095510	Msa1307210	0.824758	6.786118e-54	-8.615850e-47
Msa0243890	Msa1307210	0.820556	6.445064e-53	-8.615850e-47
Msa0251080	Msa1307210	0.812581	3.945092e-51	-8.615850e-47
Msa0261340	Msa1307210	0.800131	1.664159e-48	-8.615850e-47
Msa0264780	Msa1307210	0.807727	4.388829e-50	-8.615850e-47
Msa0276920	Msa1307210	0.803195	3.914563e-49	-8.615850e-47
Msa0317730	Msa1307210	0.833743	4.476295e-56	-8.615850e-47
Msa0358890	Msa1307210	0.830129	3.494411e-55	-8.615850e-47
Msa1108790	Msa1307210	0.817727	2.837746e-52	-8.615850e-47
Msa1122520	Msa1307210	0.804095	2.546397e-49	-8.615850e-47
Msa1130550	Msa1307210	0.803900	2.795255e-49	-8.615850e-47
Msa1139890	Msa1307210	0.827428	1.572806e-54	-8.615850e-47
Msa1152510	Msa1307210	0.819708	1.007596e-52	-8.615850e-47
Msa1156570	Msa1307210	0.813570	2.393873e-51	-8.615850e-47
Msa1158310	Msa1307210	0.809808	1.576044e-50	-8.615850e-47
Msa1175180	Msa1307210	0.801607	8.313222e-49	-8.615850e-47
Msa1176050	Msa1307210	0.884818	1.385073e-71	-8.615850e-47
Msa1193170	Msa1307210	0.804649	1.952379e-49	-8.615850e-47
Msa1199570	Msa1307210	0.805147	1.535892e-49	-8.615850e-47
Msa0483650	Msa1307210	0.845060	5.139765e-59	-8.615850e-47
Msa0528950	Msa1307210	0.803825	2.897096e-49	-8.615850e-47
Msa0537500	Msa1307210	0.809598	1.748413e-50	-8.615850e-47
Msa0546680	Msa1307210	0.800683	1.284362e-48	-8.615850e-47
Msa0569200	Msa1307210	0.801556	8.517927e-49	-8.615850e-47
Msa0586910	Msa1307210	0.800722	1.261280e-48	-8.615850e-47
Msa0599080	Msa1307210	0.807539	4.811150e-50	-8.615850e-47
Msa0843780	Msa1307210	-0.822603	2.168571e-53	-8.615850e-47
Msa0861510	Msa1307210	0.809849	1.544281e-50	-8.615850e-47
Msa0861600	Msa1307210	0.821839	3.261369e-53	-8.615850e-47
Msa0866520	Msa1307210	0.832110	1.139281e-55	-8.615850e-47
Msa0868020	Msa1307210	0.813530	2.443560e-51	-8.615850e-47
Msa0870550	Msa1307210	0.807203	5.668064e-50	-8.615850e-47
Msa0898750	Msa1307210	0.802596	5.204431e-49	-8.615850e-47
Msa0899980	Msa1307210	0.802524	5.386122e-49	-8.615850e-47
Msa0900620	Msa1307210	0.802780	4.769797e-49	-8.615850e-47
Msa0903690	Msa1307210	0.808325	3.273832e-50	-8.615850e-47
Msa0910430	Msa1307210	0.807774	4.288938e-50	-8.615850e-47
Msa0923010	Msa1307210	0.852241	5.252097e-61	-8.615850e-47
Msa0926470	Msa1307210	0.805887	1.074260e-49	-8.615850e-47
Msa0926890	Msa1307210	0.840284	9.538574e-58	-8.615850e-47
Msa0928130	Msa1307210	0.803168	3.964322e-49	-8.615850e-47
Msa0941190	Msa1307210	0.806764	7.019573e-50	-8.615850e-47
Msa0961360	Msa1307210	0.813447	2.547655e-51	-8.615850e-47
Msa0965610	Msa1307210	0.828277	9.829459e-55	-8.615850e-47
Msa0973600	Msa1307210	0.815692	8.116321e-52	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1307210	MtrunA17_Chr8g0346161	94.348	230	11	1	1	228	235	464	1.47e-157	444
Msa1307210	MtrunA17_Chr8g0346151	83.700	227	32	4	5	226	228	454	5.51e-129	371
Msa1307210	MtrunA17_Chr5g0411341	51.485	202	87	4	36	227	474	674	6.32e-59	196
Msa1307210	MtrunA17_Chr8g0366751	48.515	202	91	4	37	227	444	643	3.30e-55	186
Msa1307210	MtrunA17_Chr7g0260841	40.462	173	78	3	35	207	335	482	4.02e-33	124
Msa1307210	MtrunA17_Chr7g0275821	36.842	171	98	2	49	218	246	407	6.85e-29	112
Msa1307210	MtrunA17_Chr4g0054561	30.500	200	111	7	9	192	102	289	5.68e-19	84.0
Msa1307210	MtrunA17_Chr1g0185621	33.526	173	103	3	47	207	462	634	1.02e-18	84.3
Msa1307210	MtrunA17_Chr4g0002781	27.230	213	106	6	9	192	121	313	5.92e-18	81.3
Msa1307210	MtrunA17_Chr2g0333641	30.625	160	102	5	38	192	116	271	5.68e-17	78.2
Msa1307210	MtrunA17_Chr4g0002801	30.435	161	95	5	41	192	142	294	5.86e-17	78.2
Msa1307210	MtrunA17_Chr7g0225901	26.702	191	124	4	22	205	56	237	9.22e-17	76.6
Msa1307210	MtrunA17_Chr2g0333621	27.329	161	109	4	38	192	117	275	1.32e-16	77.0
Msa1307210	MtrunA17_Chr5g0400671	33.571	140	83	3	56	192	155	287	1.53e-16	77.0
Msa1307210	MtrunA17_Chr2g0307131	28.402	169	116	2	24	192	152	315	3.22e-16	76.6
Msa1307210	MtrunA17_Chr2g0287761	26.136	176	116	4	54	217	1	174	5.67e-16	73.6
Msa1307210	MtrunA17_Chr1g0211081	28.070	228	121	6	7	194	259	483	8.73e-16	75.9
Msa1307210	MtrunA17_Chr6g0468491	33.333	144	87	4	26	167	112	248	1.13e-15	74.7
Msa1307210	MtrunA17_Chr4g0049331	28.261	184	112	5	29	205	114	284	1.15e-15	74.3
Msa1307210	MtrunA17_Chr2g0307141	30.496	141	91	2	55	192	183	319	1.41e-15	74.7
Msa1307210	MtrunA17_Chr4g0033291	31.655	139	79	3	28	165	138	261	1.74e-15	74.3
Msa1307210	MtrunA17_Chr4g0033391	27.011	174	106	5	25	192	122	280	2.74e-15	73.6
Msa1307210	MtrunA17_Chr4g0054551	28.643	199	115	7	9	194	102	286	3.34e-15	73.2
Msa1307210	MtrunA17_Chr8g0386921	38.835	103	53	2	54	146	405	507	1.97e-14	72.0
Msa1307210	MtrunA17_Chr7g0252041	60.000	55	22	0	53	107	284	338	1.99e-14	71.6
Msa1307210	MtrunA17_Chr4g0033281	26.214	206	130	6	29	228	137	326	2.30e-14	70.9
Msa1307210	MtrunA17_Chr2g0280161	28.931	159	97	3	55	205	177	327	2.36e-14	71.2
Msa1307210	MtrunA17_Chr3g0131691	58.182	55	23	0	53	107	296	350	2.57e-14	71.2
Msa1307210	MtrunA17_Chr5g0400661	28.415	183	110	7	17	184	111	287	3.50e-14	70.5
Msa1307210	MtrunA17_Chr4g0054571	34.058	138	78	4	40	167	134	268	4.54e-14	70.1
Msa1307210	MtrunA17_Chr6g0468461	37.838	111	61	2	26	136	148	250	4.69e-14	70.1
Msa1307210	MtrunA17_Chr2g0298751	53.226	62	22	1	56	110	53	114	1.11e-13	68.2
Msa1307210	MtrunA17_Chr4g0054581	49.254	67	30	1	55	121	198	260	2.38e-13	68.6
Msa1307210	MtrunA17_Chr8g0336681	25.316	158	112	2	41	192	142	299	3.18e-12	65.1
Msa1307210	MtrunA17_Chr4g0052841	29.448	163	82	6	56	197	293	443	7.64e-12	64.3
Msa1307210	MtrunA17_Chr4g0028071	30.488	164	71	8	59	200	153	295	1.18e-11	63.2
Msa1307210	MtrunA17_Chr2g0320291	29.375	160	88	8	59	207	137	282	1.53e-11	62.8
Msa1307210	MtrunA17_Chr8g0365711	28.289	152	85	4	59	196	248	389	2.52e-11	62.4
Msa1307210	MtrunA17_Chr5g0400641	29.221	154	87	6	59	204	2	141	4.97e-11	59.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1307210	AT1G32640.1	54.082	196	82	4	35	227	433	623	7.51e-60	198
Msa1307210	AT4G17880.1	48.223	197	92	3	36	228	397	587	1.53e-57	192
Msa1307210	AT5G46760.1	48.241	199	93	4	36	228	396	590	1.46e-56	189
Msa1307210	AT5G46830.1	50.575	174	79	4	46	217	334	502	3.64e-44	155
Msa1307210	AT4G00870.1	51.397	179	76	4	54	226	248	421	1.02e-41	147
Msa1307210	AT2G46510.1	41.398	186	87	4	35	218	376	541	4.54e-36	134
Msa1307210	AT4G16430.1	38.144	194	94	4	35	228	300	467	6.33e-33	124
Msa1307210	AT1G01260.1	37.561	205	101	4	14	218	394	571	7.89e-33	125
Msa1307210	AT1G01260.2	37.561	205	101	4	14	218	394	571	7.89e-33	125
Msa1307210	AT1G01260.3	37.561	205	101	4	14	218	394	571	7.89e-33	125
Msa1307210	AT4G37850.2	31.325	166	104	5	32	192	130	290	1.15e-16	77.8
Msa1307210	AT4G37850.1	31.325	166	104	5	32	192	130	290	1.15e-16	77.8
Msa1307210	AT1G63650.3	27.711	166	103	3	55	203	405	570	2.06e-16	78.2
Msa1307210	AT1G63650.1	27.711	166	103	3	55	203	405	570	2.06e-16	78.2
Msa1307210	AT1G63650.2	27.711	166	103	3	55	203	405	570	2.06e-16	78.2
Msa1307210	AT4G09820.1	33.588	131	64	2	54	183	362	470	1.26e-15	75.9
Msa1307210	AT3G26744.1	60.000	55	22	0	53	107	305	359	4.55e-15	73.9
Msa1307210	AT3G26744.4	60.000	55	22	0	53	107	305	359	4.55e-15	73.9
Msa1307210	AT3G26744.2	60.000	55	22	0	53	107	305	359	4.55e-15	73.9
Msa1307210	AT3G26744.6	60.000	55	22	0	53	107	305	359	4.62e-15	73.9
Msa1307210	AT1G12860.2	57.895	57	24	0	53	109	265	321	4.87e-15	73.9
Msa1307210	AT1G12860.1	57.895	57	24	0	53	109	265	321	5.33e-15	73.9
Msa1307210	AT3G06120.1	27.869	183	111	4	54	215	1	183	1.05e-14	70.5
Msa1307210	AT5G57150.1	26.721	247	137	10	1	227	9	231	1.51e-14	70.9
Msa1307210	AT5G57150.2	27.315	216	116	8	13	207	20	215	2.33e-14	70.1
Msa1307210	AT5G57150.3	26.852	216	117	8	13	207	20	215	3.52e-14	69.3
Msa1307210	AT5G57150.5	37.719	114	50	4	13	125	20	113	3.68e-14	69.3
Msa1307210	AT5G57150.4	27.397	219	117	9	13	209	20	218	4.16e-14	70.1
Msa1307210	AT4G29930.5	54.098	61	21	1	56	109	55	115	6.15e-14	68.9
Msa1307210	AT4G29930.2	45.238	84	34	2	33	109	37	115	6.77e-14	68.9
Msa1307210	AT4G29930.6	54.098	61	21	1	56	109	55	115	7.74e-14	68.6
Msa1307210	AT4G29930.3	54.098	61	21	1	56	109	55	115	1.17e-13	68.6
Msa1307210	AT4G29930.7	54.098	61	21	1	56	109	55	115	1.17e-13	68.6
Msa1307210	AT4G29930.1	54.098	61	21	1	56	109	55	115	1.33e-13	68.6
Msa1307210	AT4G29930.4	55.000	60	20	1	57	109	56	115	1.58e-13	67.0
Msa1307210	AT1G10610.2	32.847	137	85	4	56	187	235	369	6.52e-13	67.4
Msa1307210	AT1G10610.1	32.847	137	85	4	56	187	265	399	6.60e-13	67.8
Msa1307210	AT1G10610.3	32.847	137	85	4	56	187	168	302	7.36e-13	67.0
Msa1307210	AT5G41315.3	32.258	93	49	1	55	147	446	524	8.08e-13	67.4
Msa1307210	AT5G41315.2	32.258	93	49	1	55	147	449	527	8.40e-13	67.4
Msa1307210	AT5G41315.1	32.258	93	49	1	55	147	441	519	8.61e-13	67.4
Msa1307210	AT2G22760.2	28.415	183	106	7	42	205	100	276	1.80e-12	65.5
Msa1307210	AT2G16910.1	54.000	50	23	0	59	108	318	367	2.38e-12	66.2
Msa1307210	AT2G22760.1	29.697	165	96	6	42	192	100	258	3.51e-12	64.7
Msa1307210	AT3G24140.2	24.352	193	122	3	54	222	197	389	1.12e-11	63.9
Msa1307210	AT3G24140.1	24.352	193	122	3	54	222	197	389	1.21e-11	63.9
Msa1307210	AT4G21330.1	30.065	153	85	3	56	196	33	175	2.29e-11	61.6
Msa1307210	AT4G38070.1	38.095	84	49	1	24	107	67	147	3.98e-11	61.6
Msa1307210	AT2G22750.2	27.465	142	99	1	55	192	126	267	5.33e-11	61.6
Msa1307210	AT2G22750.1	27.465	142	99	1	55	192	126	267	5.41e-11	61.6
Msa1307210	AT2G28160.2	50.980	51	25	0	59	109	135	185	5.99e-11	61.6
Msa1307210	AT2G28160.1	50.980	51	25	0	59	109	135	185	6.62e-11	61.2
Msa1307210	AT2G22750.5	27.465	142	99	1	55	192	150	291	8.14e-11	61.2
Msa1307210	AT2G22750.4	27.465	142	99	1	55	192	154	295	8.15e-11	61.2
Msa1307210	AT2G22750.3	27.465	142	99	1	55	192	154	295	8.74e-11	61.2

Find 32 sgRNAs with CRISPR-Local

Find 37 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTGAAGGATTTGGAGTTTC+AGG	0.119847	8_4:-2606991	Msa1307210:CDS
GAGATTGATGTGAAGATAAT+AGG	0.216324	8_4:-2607080	Msa1307210:CDS
TTATCCATCTTTGAAACATT+TGG	0.290544	8_4:+2607293	None:intergenic
ATCTTAAAGCATAGAATCTA+TGG	0.304209	8_4:+2607324	None:intergenic
ATTCTTGTTGGTGTTGCTAA+TGG	0.335278	8_4:+2607464	None:intergenic
AATGAGTGTCTTGAAGGATT+TGG	0.342944	8_4:-2607000	Msa1307210:CDS
AAGATTGAAGACTTAGAATC+AGG	0.369405	8_4:-2607221	Msa1307210:CDS
AGAGGAAGAAAACCGTTATC+AGG	0.381422	8_4:-2607404	Msa1307210:CDS
TCAGCCATTCTCATGAAATT+AGG	0.386390	8_4:-2606870	Msa1307210:CDS
ATCGACTGTTAATGAAGTTA+TGG	0.398979	8_4:-2606952	Msa1307210:CDS
AAGATTAATGAGTGTCTTGA+AGG	0.413301	8_4:-2607006	Msa1307210:CDS
TCTGCTTCCACATGGTTTAA+CGG	0.415651	8_4:+2607371	None:intergenic
GGTTCCAAATGTTTCAAAGA+TGG	0.435449	8_4:-2607297	Msa1307210:CDS
AAAAGTGAAGATGGAAATGA+TGG	0.445716	8_4:-2607180	Msa1307210:CDS
TCTTCCGTGCTCATCTCGTT+AGG	0.461472	8_4:+2606906	None:intergenic
CTGACCTAATTTCATGAGAA+TGG	0.482002	8_4:+2606866	None:intergenic
CTTAGAATCAGGGCAACAAA+AGG	0.502345	8_4:-2607210	Msa1307210:CDS
GGTGTTTGAGTTCCTGATAA+CGG	0.508977	8_4:+2607392	None:intergenic
TTTGTCTCTCTGCTTCCACA+TGG	0.518910	8_4:+2607363	None:intergenic
ATTCTATGCTTTAAGATCTG+TGG	0.527981	8_4:-2607318	Msa1307210:CDS
ACACTCATTAATCTTGCACT+AGG	0.531898	8_4:+2607014	None:intergenic
ATGTGGAAGCAGAGAGACAA+AGG	0.547229	8_4:-2607361	Msa1307210:CDS
TCAAAAGCATTAACATTACA+AGG	0.560113	8_4:+2607101	None:intergenic
CTTGTTGGTGTTGCTAATGG+TGG	0.567083	8_4:+2607467	None:intergenic
GATAATAGGAAATGATGCTA+TGG	0.577854	8_4:-2607066	Msa1307210:CDS
TGCAACGGCAACTTCAACTG+TGG	0.578390	8_4:-2607138	Msa1307210:CDS
AGATTGAAGACTTAGAATCA+GGG	0.588379	8_4:-2607220	Msa1307210:CDS
AAAAGAGAACCTAAGAAGAG+AGG	0.611347	8_4:-2607422	Msa1307210:CDS
TGTCGATAATAACAGTGCAA+CGG	0.631393	8_4:-2607153	Msa1307210:CDS
CACTCATTAATCTTGCACTA+GGG	0.642950	8_4:+2607015	None:intergenic
AGTTCCTAACGAGATGAGCA+CGG	0.664680	8_4:-2606910	Msa1307210:CDS
TCAAACACCGTTAAACCATG+TGG	0.685029	8_4:-2607378	Msa1307210:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	GAATCTTTTTCAATTCTTGT+TGG	+	chr8_4:2606941-2606960	None:intergenic	25.0%
!	ATCTTAAAGCATAGAATCTA+TGG	+	chr8_4:2607069-2607088	None:intergenic	25.0%
!!!	TTATCCATCTTTGAAACATT+TGG	+	chr8_4:2607100-2607119	None:intergenic	25.0%
!!!	TAACATTACAAGGTCTTTTT+TGG	+	chr8_4:2607282-2607301	None:intergenic	25.0%
!!!	TCAAAAGCATTAACATTACA+AGG	+	chr8_4:2607292-2607311	None:intergenic	25.0%
!!	ATTCTATGCTTTAAGATCTG+TGG	-	chr8_4:2607072-2607091	Msa1307210:CDS	30.0%
	AAGATTGAAGACTTAGAATC+AGG	-	chr8_4:2607169-2607188	Msa1307210:CDS	30.0%
	AGATTGAAGACTTAGAATCA+GGG	-	chr8_4:2607170-2607189	Msa1307210:CDS	30.0%
	AAAAGTGAAGATGGAAATGA+TGG	-	chr8_4:2607210-2607229	Msa1307210:CDS	30.0%
	GAGATTGATGTGAAGATAAT+AGG	-	chr8_4:2607310-2607329	Msa1307210:CDS	30.0%
	GATAATAGGAAATGATGCTA+TGG	-	chr8_4:2607324-2607343	Msa1307210:CDS	30.0%
	AAGATTAATGAGTGTCTTGA+AGG	-	chr8_4:2607384-2607403	Msa1307210:CDS	30.0%
	ATCGACTGTTAATGAAGTTA+TGG	-	chr8_4:2607438-2607457	Msa1307210:CDS	30.0%
!!	ATTCTTGTTGGTGTTGCTAA+TGG	+	chr8_4:2606929-2606948	None:intergenic	35.0%
	AAAAGAGAACCTAAGAAGAG+AGG	-	chr8_4:2606968-2606987	Msa1307210:CDS	35.0%
	GGTTCCAAATGTTTCAAAGA+TGG	-	chr8_4:2607093-2607112	Msa1307210:CDS	35.0%
!	TTCTCTTTTATCAGATGCAG+TGG	-	chr8_4:2607123-2607142	Msa1307210:CDS	35.0%
	GGAATCGAAAAAAGTGAAGA+TGG	-	chr8_4:2607201-2607220	Msa1307210:CDS	35.0%
	TGTCGATAATAACAGTGCAA+CGG	-	chr8_4:2607237-2607256	Msa1307210:CDS	35.0%
	CACTCATTAATCTTGCACTA+GGG	+	chr8_4:2607378-2607397	None:intergenic	35.0%
	ACACTCATTAATCTTGCACT+AGG	+	chr8_4:2607379-2607398	None:intergenic	35.0%
	AATGAGTGTCTTGAAGGATT+TGG	-	chr8_4:2607390-2607409	Msa1307210:CDS	35.0%
	TCAGCCATTCTCATGAAATT+AGG	-	chr8_4:2607520-2607539	Msa1307210:CDS	35.0%
	CTGACCTAATTTCATGAGAA+TGG	+	chr8_4:2607527-2607546	None:intergenic	35.0%
!	GGTTTTCTTCCTCTCTTCTT+AGG	+	chr8_4:2606980-2606999	None:intergenic	40.0%
	AGAGGAAGAAAACCGTTATC+AGG	-	chr8_4:2606986-2607005	Msa1307210:CDS	40.0%
!	GGTGTTTGAGTTCCTGATAA+CGG	+	chr8_4:2607001-2607020	None:intergenic	40.0%
	TCAAACACCGTTAAACCATG+TGG	-	chr8_4:2607012-2607031	Msa1307210:CDS	40.0%
	TCTGCTTCCACATGGTTTAA+CGG	+	chr8_4:2607022-2607041	None:intergenic	40.0%
	CTTAGAATCAGGGCAACAAA+AGG	-	chr8_4:2607180-2607199	Msa1307210:CDS	40.0%
!	CTTGAAGGATTTGGAGTTTC+AGG	-	chr8_4:2607399-2607418	Msa1307210:CDS	40.0%
!!	CTTGTTGGTGTTGCTAATGG+TGG	+	chr8_4:2606926-2606945	None:intergenic	45.0%
	TTTGTCTCTCTGCTTCCACA+TGG	+	chr8_4:2607030-2607049	None:intergenic	45.0%
	ATGTGGAAGCAGAGAGACAA+AGG	-	chr8_4:2607029-2607048	Msa1307210:CDS	45.0%
	AGTTCCTAACGAGATGAGCA+CGG	-	chr8_4:2607480-2607499	Msa1307210:CDS	45.0%
	TGCAACGGCAACTTCAACTG+TGG	-	chr8_4:2607252-2607271	Msa1307210:CDS	50.0%
	TCTTCCGTGCTCATCTCGTT+AGG	+	chr8_4:2607487-2607506	None:intergenic	50.0%

Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	2606863	2607549	2606863	ID=Msa1307210;Name=Msa1307210
chr8_4	mRNA	2606863	2607549	2606863	ID=Msa1307210-mRNA-1;Parent=Msa1307210;Name=Msa1307210-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|228
chr8_4	exon	2606863	2607549	2606863	ID=Msa1307210-mRNA-1:exon:802;Parent=Msa1307210-mRNA-1
chr8_4	CDS	2606863	2607549	2606863	ID=Msa1307210-mRNA-1:cds;Parent=Msa1307210-mRNA-1

Gene Sequence

>Msa1307210

ATGAATAACATTGTTTCATCATGTTCTTTTGATTCTGAAAATTCTGATTCAGAATATTGTCCACCATTAGCAACACCAACAAGAATTGAAAAAGATTCTTTTGAGAAAAGAGAACCTAAGAAGAGAGGAAGAAAACCGTTATCAGGAACTCAAACACCGTTAAACCATGTGGAAGCAGAGAGACAAAGGAGAGAGAAACTAAACCATAGATTCTATGCTTTAAGATCTGTGGTTCCAAATGTTTCAAAGATGGATAAAGCTTCTCTTTTATCAGATGCAGTGGATTACATCAACGAGTTAAAAGCAAAGATTGAAGACTTAGAATCAGGGCAACAAAAGGAATCGAAAAAAGTGAAGATGGAAATGATGGAAATTGTCGATAATAACAGTGCAACGGCAACTTCAACTGTGGTAGACCAAAAAAGACCTTGTAATGTTAATGCTTTTGAGATTGATGTGAAGATAATAGGAAATGATGCTATGGTGAGAGTTCAAAGTGAGAATGTTAATCACCCTAGTGCAAGATTAATGAGTGTCTTGAAGGATTTGGAGTTTCAGGTACATCATGCTAGTATATCGACTGTTAATGAAGTTATGGTTCAAGATGTTGTTGTTCGAGTTCCTAACGAGATGAGCACGGAAGAGAGTCTAATTAGATCAGCCATTCTCATGAAATTAGGTCAGTAG

Protein sequence

>Msa1307210

MNNIVSSCSFDSENSDSEYCPPLATPTRIEKDSFEKREPKKRGRKPLSGTQTPLNHVEAERQRREKLNHRFYALRSVVPNVSKMDKASLLSDAVDYINELKAKIEDLESGQQKESKKVKMEMMEIVDNNSATATSTVVDQKRPCNVNAFEIDVKIIGNDAMVRVQSENVNHPSARLMSVLKDLEFQVHHASISTVNEVMVQDVVVRVPNEMSTEESLIRSAILMKLGQ*