Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295600 | XP_003629427.1 | 98.611 | 72 | 1 | 0 | 1 | 72 | 1 | 72 | 1.16e-45 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295600 | sp|F4JVB8|RADL1_ARATH | 66.154 | 65 | 21 | 1 | 5 | 68 | 14 | 78 | 1.39e-27 | 98.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295600 | G7LDY8 | 98.611 | 72 | 1 | 0 | 1 | 72 | 1 | 72 | 5.52e-46 | 150 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0621380 | Msa1295600 | 0.860762 | 1.647771e-63 | -8.615850e-47 |
| Msa0621390 | Msa1295600 | 0.862752 | 4.056104e-64 | -8.615850e-47 |
| Msa0621410 | Msa1295600 | 0.840158 | 1.028927e-57 | -8.615850e-47 |
| Msa0217470 | Msa1295600 | 0.811672 | 6.227215e-51 | -8.615850e-47 |
| Msa1255120 | Msa1295600 | 0.854929 | 8.870617e-62 | -8.615850e-47 |
| Msa1255130 | Msa1295600 | 0.802593 | 5.212069e-49 | -8.615850e-47 |
| Msa1255150 | Msa1295600 | 0.823303 | 1.489115e-53 | -8.615850e-47 |
| Msa1295570 | Msa1295600 | 0.855856 | 4.764886e-62 | -8.615850e-47 |
| Msa1295580 | Msa1295600 | 0.851598 | 7.995271e-61 | -8.615850e-47 |
| Msa1295590 | Msa1295600 | 0.818580 | 1.819697e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295600 | MtrunA17_Chr8g0373111 | 98.611 | 72 | 1 | 0 | 1 | 72 | 1 | 72 | 1.06e-49 | 150 |
| Msa1295600 | MtrunA17_Chr8g0373121 | 98.611 | 72 | 1 | 0 | 1 | 72 | 1 | 72 | 1.06e-49 | 150 |
| Msa1295600 | MtrunA17_Chr8g0373131 | 97.222 | 72 | 2 | 0 | 1 | 72 | 1 | 72 | 3.36e-49 | 149 |
| Msa1295600 | MtrunA17_Chr5g0404301 | 82.258 | 62 | 11 | 0 | 3 | 64 | 2 | 63 | 1.06e-35 | 114 |
| Msa1295600 | MtrunA17_Chr8g0373101 | 68.571 | 70 | 21 | 1 | 1 | 70 | 1 | 69 | 3.10e-32 | 106 |
| Msa1295600 | MtrunA17_Chr3g0144631 | 64.615 | 65 | 22 | 1 | 5 | 68 | 16 | 80 | 1.12e-27 | 95.1 |
| Msa1295600 | MtrunA17_Chr1g0155181 | 55.224 | 67 | 29 | 1 | 2 | 67 | 4 | 70 | 6.04e-26 | 90.9 |
| Msa1295600 | MtrunA17_Chr6g0449111 | 57.576 | 66 | 27 | 1 | 2 | 66 | 7 | 72 | 2.73e-25 | 89.0 |
| Msa1295600 | MtrunA17_Chr5g0404101 | 54.688 | 64 | 28 | 1 | 5 | 67 | 19 | 82 | 1.38e-24 | 87.8 |
| Msa1295600 | MtrunA17_Chr3g0141601 | 55.072 | 69 | 30 | 1 | 2 | 69 | 4 | 72 | 6.39e-24 | 85.9 |
| Msa1295600 | MtrunA17_Chr3g0081631 | 55.072 | 69 | 29 | 1 | 2 | 68 | 7 | 75 | 8.47e-23 | 83.2 |
| Msa1295600 | MtrunA17_Chr7g0255841 | 59.016 | 61 | 24 | 1 | 8 | 67 | 15 | 75 | 3.53e-22 | 81.6 |
| Msa1295600 | MtrunA17_Chr5g0429521 | 54.930 | 71 | 31 | 1 | 1 | 70 | 25 | 95 | 7.70e-21 | 82.8 |
| Msa1295600 | MtrunA17_Chr3g0141641 | 55.385 | 65 | 28 | 1 | 4 | 67 | 2 | 66 | 6.53e-20 | 75.9 |
| Msa1295600 | MtrunA17_Chr3g0104071 | 54.412 | 68 | 30 | 1 | 2 | 68 | 40 | 107 | 8.68e-20 | 80.1 |
| Msa1295600 | MtrunA17_Chr7g0241761 | 51.429 | 70 | 33 | 1 | 2 | 70 | 32 | 101 | 7.15e-18 | 75.1 |
| Msa1295600 | MtrunA17_Chr8g0365011 | 43.836 | 73 | 40 | 1 | 1 | 72 | 4 | 76 | 5.99e-17 | 72.4 |
| Msa1295600 | MtrunA17_Chr5g0436501 | 50.769 | 65 | 31 | 1 | 3 | 66 | 25 | 89 | 5.16e-16 | 69.7 |
| Msa1295600 | MtrunA17_Chr1g0194071 | 47.143 | 70 | 35 | 1 | 3 | 70 | 9 | 78 | 3.30e-15 | 63.9 |
| Msa1295600 | MtrunA17_Chr7g0270711 | 50.820 | 61 | 28 | 1 | 3 | 61 | 9 | 69 | 1.29e-14 | 62.4 |
| Msa1295600 | MtrunA17_Chr1g0162081 | 38.571 | 70 | 42 | 1 | 2 | 70 | 9 | 78 | 2.60e-14 | 65.1 |
| Msa1295600 | MtrunA17_Chr8g0364741 | 37.500 | 72 | 44 | 1 | 2 | 72 | 7 | 78 | 1.87e-13 | 60.5 |
| Msa1295600 | MtrunA17_Chr1g0210471 | 40.000 | 65 | 38 | 1 | 3 | 66 | 22 | 86 | 1.32e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295600 | AT4G39250.1 | 66.154 | 65 | 21 | 1 | 5 | 68 | 14 | 78 | 1.41e-28 | 98.2 |
| Msa1295600 | AT1G75250.2 | 62.687 | 67 | 24 | 1 | 3 | 68 | 10 | 76 | 4.76e-27 | 94.4 |
| Msa1295600 | AT1G75250.1 | 64.615 | 65 | 22 | 1 | 5 | 68 | 12 | 76 | 6.58e-27 | 94.7 |
| Msa1295600 | AT2G21650.1 | 56.522 | 69 | 29 | 1 | 5 | 72 | 14 | 82 | 8.41e-26 | 91.3 |
| Msa1295600 | AT1G19510.1 | 61.290 | 62 | 23 | 1 | 8 | 68 | 15 | 76 | 7.36e-24 | 86.3 |
| Msa1295600 | AT2G18328.1 | 55.385 | 65 | 27 | 2 | 8 | 71 | 14 | 77 | 1.04e-18 | 72.8 |
| Msa1295600 | AT2G38090.1 | 51.429 | 70 | 33 | 1 | 2 | 70 | 26 | 95 | 3.22e-18 | 76.3 |
| Msa1295600 | AT5G58900.1 | 52.174 | 69 | 32 | 1 | 2 | 69 | 31 | 99 | 1.33e-17 | 74.3 |
| Msa1295600 | AT4G36570.1 | 65.909 | 44 | 14 | 1 | 5 | 47 | 12 | 55 | 6.84e-16 | 65.1 |
| Msa1295600 | AT5G05790.2 | 45.714 | 70 | 37 | 1 | 2 | 70 | 28 | 97 | 9.27e-16 | 69.3 |
| Msa1295600 | AT5G05790.1 | 45.714 | 70 | 37 | 1 | 2 | 70 | 28 | 97 | 9.27e-16 | 69.3 |
| Msa1295600 | AT3G11280.2 | 49.206 | 63 | 31 | 1 | 5 | 66 | 33 | 95 | 2.42e-15 | 68.2 |
| Msa1295600 | AT3G11280.1 | 49.206 | 63 | 31 | 1 | 5 | 66 | 33 | 95 | 2.42e-15 | 68.2 |
| Msa1295600 | AT5G08520.1 | 47.826 | 69 | 35 | 1 | 5 | 72 | 12 | 80 | 3.62e-14 | 65.1 |
| Msa1295600 | AT5G04760.1 | 43.284 | 67 | 37 | 1 | 1 | 66 | 1 | 67 | 3.29e-13 | 61.6 |
| Msa1295600 | AT5G01200.1 | 45.070 | 71 | 37 | 2 | 4 | 72 | 29 | 99 | 1.61e-12 | 60.5 |
| Msa1295600 | AT1G49010.1 | 41.429 | 70 | 37 | 2 | 1 | 66 | 4 | 73 | 5.46e-12 | 59.3 |
Find 31 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAACATTGTGCCATCTTTC+AGG | 0.193556 | 8_3:-53752560 | None:intergenic |
| GGTTGGTTATTCAAGCTTAT+TGG | 0.208329 | 8_3:-53753397 | None:intergenic |
| TATTCAAGCTTATTGGATTC+TGG | 0.223362 | 8_3:-53753390 | None:intergenic |
| TGAATAATATTGTTAGAAAA+AGG | 0.285820 | 8_3:-53752446 | None:intergenic |
| TTGAATAACCAACCAATATC+TGG | 0.313819 | 8_3:+53753406 | Msa1295600:three_prime_UTR |
| AGAAAAGAAAGGAAATAAAT+AGG | 0.314546 | 8_3:-53753505 | None:intergenic |
| AAGCATTGGCTTTATATGAT+AGG | 0.319279 | 8_3:+53752531 | Msa1295600:CDS |
| CTGGCGTATCTATGTATCTA+TGG | 0.332880 | 8_3:+53753425 | Msa1295600:three_prime_UTR |
| TACATAGATACGCCAGATAT+TGG | 0.365138 | 8_3:-53753418 | None:intergenic |
| GATTGCCACATTCAATTGGC+AGG | 0.406730 | 8_3:-53753476 | None:intergenic |
| TTCATTCATTCATCAACAAA+TGG | 0.409031 | 8_3:+53752469 | Msa1295600:exon |
| TGTAACGAGGAAAAGGGATA+TGG | 0.417505 | 8_3:-53752664 | None:intergenic |
| AATTATTGTAACTTAAATGA+AGG | 0.419922 | 8_3:+53753621 | Msa1295600:three_prime_UTR |
| AAAAGATTGCCACATTCAAT+TGG | 0.420645 | 8_3:-53753480 | None:intergenic |
| TACGTTGAACATCTTCTTTG+AGG | 0.435409 | 8_3:-53752631 | None:intergenic |
| ATCAACAAATGGCAACCTCT+TGG | 0.450563 | 8_3:+53752480 | Msa1295600:exon |
| CAAACTGTTTGAACAAGCAT+TGG | 0.467435 | 8_3:+53752517 | Msa1295600:CDS |
| AGCATTGGCTTTATATGATA+GGG | 0.471289 | 8_3:+53752532 | Msa1295600:CDS |
| TAGATACGCCAGATATTGGT+TGG | 0.523803 | 8_3:-53753414 | None:intergenic |
| TACGTATATACCTTAGGAGT+TGG | 0.529338 | 8_3:-53752696 | None:intergenic |
| TGACTAGCTATAGAAAAGAA+AGG | 0.531789 | 8_3:-53753516 | None:intergenic |
| CACAATGTTGCCAAAGTGGT+TGG | 0.534351 | 8_3:+53752572 | Msa1295600:CDS |
| TGGCAACCTCTTGGACTGCA+AGG | 0.539984 | 8_3:+53752489 | Msa1295600:CDS |
| ATAGGGAAACTCCTGAAAGA+TGG | 0.559123 | 8_3:+53752549 | Msa1295600:CDS |
| AAAACTAATACCAACTCCTA+AGG | 0.574202 | 8_3:+53752686 | Msa1295600:CDS |
| GTTCTGCCTTGCAGTCCAAG+AGG | 0.596751 | 8_3:-53752495 | None:intergenic |
| ATTGCCACATTCAATTGGCA+GGG | 0.612846 | 8_3:-53753475 | None:intergenic |
| ATGGCACAATGTTGCCAAAG+TGG | 0.642850 | 8_3:+53752568 | Msa1295600:CDS |
| TGCACCCTGCCAATTGAATG+TGG | 0.659726 | 8_3:+53753471 | Msa1295600:three_prime_UTR |
| AAGGTAAAGCAACGAATACG+AGG | 0.666352 | 8_3:-53753549 | None:intergenic |
| GATGTTCAACGTATTGAGCG+TGG | 0.669371 | 8_3:+53752641 | Msa1295600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTGAAAAGTTTAATTT+TGG | + | chr8_3:53753255-53753274 | Msa1295600:intron | 10.0% |
| !!! | TAAATACAATATCTTATTTT+TGG | - | chr8_3:53753588-53753607 | None:intergenic | 10.0% |
| !!! | TATTTTGAAAAGTTTAATTT+TGG | + | chr8_3:53753255-53753274 | Msa1295600:intron | 10.0% |
| !!! | TAAATACAATATCTTATTTT+TGG | - | chr8_3:53753588-53753607 | None:intergenic | 10.0% |
| !!! | TATATTTTTTAGTTAAGTGA+AGG | - | chr8_3:53752412-53752431 | None:intergenic | 15.0% |
| !! | TGAATAATATTGTTAGAAAA+AGG | - | chr8_3:53752449-53752468 | None:intergenic | 15.0% |
| !! | ATTAAATAAGCGTATAAATA+TGG | - | chr8_3:53752973-53752992 | None:intergenic | 15.0% |
| !!! | ATTAATATAGTTTTCATCAA+AGG | - | chr8_3:53753072-53753091 | None:intergenic | 15.0% |
| !! | TTTGATGAAAACTATATTAA+TGG | + | chr8_3:53753071-53753090 | Msa1295600:intron | 15.0% |
| !!! | TTATTTTTGGTACAAATTTA+AGG | - | chr8_3:53753575-53753594 | None:intergenic | 15.0% |
| !! | AATTATTGTAACTTAAATGA+AGG | + | chr8_3:53753621-53753640 | Msa1295600:three_prime_UTR | 15.0% |
| !!! | TATATTTTTTAGTTAAGTGA+AGG | - | chr8_3:53752412-53752431 | None:intergenic | 15.0% |
| !! | TGAATAATATTGTTAGAAAA+AGG | - | chr8_3:53752449-53752468 | None:intergenic | 15.0% |
| !! | ATTAAATAAGCGTATAAATA+TGG | - | chr8_3:53752973-53752992 | None:intergenic | 15.0% |
| !!! | ATTAATATAGTTTTCATCAA+AGG | - | chr8_3:53753072-53753091 | None:intergenic | 15.0% |
| !! | TTTGATGAAAACTATATTAA+TGG | + | chr8_3:53753071-53753090 | Msa1295600:intron | 15.0% |
| !!! | TTATTTTTGGTACAAATTTA+AGG | - | chr8_3:53753575-53753594 | None:intergenic | 15.0% |
| !! | AATTATTGTAACTTAAATGA+AGG | + | chr8_3:53753621-53753640 | Msa1295600:three_prime_UTR | 15.0% |
| !! | TATTGTTAGAAAAAGGAATA+AGG | - | chr8_3:53752442-53752461 | None:intergenic | 20.0% |
| !!! | TTTTTTATCTGTCATTTTCT+TGG | - | chr8_3:53752838-53752857 | None:intergenic | 20.0% |
| !! | TATAATGATCATCAAATTCA+CGG | + | chr8_3:53752858-53752877 | Msa1295600:intron | 20.0% |
| !! | AAGACCATTATAATTCTTAT+AGG | + | chr8_3:53753230-53753249 | Msa1295600:intron | 20.0% |
| !! | TACTCCTATAAGAATTATAA+TGG | - | chr8_3:53753237-53753256 | None:intergenic | 20.0% |
| !!! | TTGAAAAGTTTAATTTTGGT+TGG | + | chr8_3:53753259-53753278 | Msa1295600:intron | 20.0% |
| !! | GTTCTTTGTATACATAATAT+TGG | + | chr8_3:53753309-53753328 | Msa1295600:intron | 20.0% |
| !!! | ATTGGCTTAATATACTAATA+AGG | + | chr8_3:53753327-53753346 | Msa1295600:intron | 20.0% |
| !! | AGAAAAGAAAGGAAATAAAT+AGG | - | chr8_3:53753508-53753527 | None:intergenic | 20.0% |
| !! | TATTGTTAGAAAAAGGAATA+AGG | - | chr8_3:53752442-53752461 | None:intergenic | 20.0% |
| !!! | TTTTTTATCTGTCATTTTCT+TGG | - | chr8_3:53752838-53752857 | None:intergenic | 20.0% |
| !! | TATAATGATCATCAAATTCA+CGG | + | chr8_3:53752858-53752877 | Msa1295600:intron | 20.0% |
| !! | AAGACCATTATAATTCTTAT+AGG | + | chr8_3:53753230-53753249 | Msa1295600:intron | 20.0% |
| !! | TACTCCTATAAGAATTATAA+TGG | - | chr8_3:53753237-53753256 | None:intergenic | 20.0% |
| !!! | TTGAAAAGTTTAATTTTGGT+TGG | + | chr8_3:53753259-53753278 | Msa1295600:intron | 20.0% |
| !! | GTTCTTTGTATACATAATAT+TGG | + | chr8_3:53753309-53753328 | Msa1295600:intron | 20.0% |
| !!! | ATTGGCTTAATATACTAATA+AGG | + | chr8_3:53753327-53753346 | Msa1295600:intron | 20.0% |
| !! | AGAAAAGAAAGGAAATAAAT+AGG | - | chr8_3:53753508-53753527 | None:intergenic | 20.0% |
| ! | TTCATTCATTCATCAACAAA+TGG | + | chr8_3:53752469-53752488 | Msa1295600:exon | 25.0% |
| !! | TTTTGGTACAAATTTAAGGA+AGG | - | chr8_3:53753571-53753590 | None:intergenic | 25.0% |
| ! | TTCATTCATTCATCAACAAA+TGG | + | chr8_3:53752469-53752488 | Msa1295600:exon | 25.0% |
| !! | TTTTGGTACAAATTTAAGGA+AGG | - | chr8_3:53753571-53753590 | None:intergenic | 25.0% |
| GTTAGAAAAAGGAATAAGGT+TGG | - | chr8_3:53752438-53752457 | None:intergenic | 30.0% | |
| !! | AAGCATTGGCTTTATATGAT+AGG | + | chr8_3:53752531-53752550 | Msa1295600:CDS | 30.0% |
| !! | AGCATTGGCTTTATATGATA+GGG | + | chr8_3:53752532-53752551 | Msa1295600:CDS | 30.0% |
| !!! | TAGTTTTGTAACGAGGAAAA+GGG | - | chr8_3:53752673-53752692 | None:intergenic | 30.0% |
| !!! | TTAGTTTTGTAACGAGGAAA+AGG | - | chr8_3:53752674-53752693 | None:intergenic | 30.0% |
| !!! | TTGGTATTAGTTTTGTAACG+AGG | - | chr8_3:53752680-53752699 | None:intergenic | 30.0% |
| AAAACTAATACCAACTCCTA+AGG | + | chr8_3:53752686-53752705 | Msa1295600:CDS | 30.0% | |
| ! | TTTTCATCAAAGGACAAGAT+AGG | - | chr8_3:53753062-53753081 | None:intergenic | 30.0% |
| TGTGCAACAATATTTCTCTT+GGG | - | chr8_3:53753108-53753127 | None:intergenic | 30.0% | |
| ATGTGCAACAATATTTCTCT+TGG | - | chr8_3:53753109-53753128 | None:intergenic | 30.0% | |
| ! | ACTTTTCCTATATACTTCTC+AGG | + | chr8_3:53753354-53753373 | Msa1295600:intron | 30.0% |
| TATTCAAGCTTATTGGATTC+TGG | - | chr8_3:53753393-53753412 | None:intergenic | 30.0% | |
| TTGAATAACCAACCAATATC+TGG | + | chr8_3:53753406-53753425 | Msa1295600:three_prime_UTR | 30.0% | |
| AAAAGATTGCCACATTCAAT+TGG | - | chr8_3:53753483-53753502 | None:intergenic | 30.0% | |
| ! | TGACTAGCTATAGAAAAGAA+AGG | - | chr8_3:53753519-53753538 | None:intergenic | 30.0% |
| GTTAGAAAAAGGAATAAGGT+TGG | - | chr8_3:53752438-53752457 | None:intergenic | 30.0% | |
| !! | AAGCATTGGCTTTATATGAT+AGG | + | chr8_3:53752531-53752550 | Msa1295600:CDS | 30.0% |
| !! | AGCATTGGCTTTATATGATA+GGG | + | chr8_3:53752532-53752551 | Msa1295600:CDS | 30.0% |
| !!! | TAGTTTTGTAACGAGGAAAA+GGG | - | chr8_3:53752673-53752692 | None:intergenic | 30.0% |
| !!! | TTAGTTTTGTAACGAGGAAA+AGG | - | chr8_3:53752674-53752693 | None:intergenic | 30.0% |
| !!! | TTGGTATTAGTTTTGTAACG+AGG | - | chr8_3:53752680-53752699 | None:intergenic | 30.0% |
| AAAACTAATACCAACTCCTA+AGG | + | chr8_3:53752686-53752705 | Msa1295600:CDS | 30.0% | |
| ! | TTTTCATCAAAGGACAAGAT+AGG | - | chr8_3:53753062-53753081 | None:intergenic | 30.0% |
| TGTGCAACAATATTTCTCTT+GGG | - | chr8_3:53753108-53753127 | None:intergenic | 30.0% | |
| ATGTGCAACAATATTTCTCT+TGG | - | chr8_3:53753109-53753128 | None:intergenic | 30.0% | |
| ! | ACTTTTCCTATATACTTCTC+AGG | + | chr8_3:53753354-53753373 | Msa1295600:intron | 30.0% |
| TATTCAAGCTTATTGGATTC+TGG | - | chr8_3:53753393-53753412 | None:intergenic | 30.0% | |
| TTGAATAACCAACCAATATC+TGG | + | chr8_3:53753406-53753425 | Msa1295600:three_prime_UTR | 30.0% | |
| AAAAGATTGCCACATTCAAT+TGG | - | chr8_3:53753483-53753502 | None:intergenic | 30.0% | |
| ! | TGACTAGCTATAGAAAAGAA+AGG | - | chr8_3:53753519-53753538 | None:intergenic | 30.0% |
| CAAACTGTTTGAACAAGCAT+TGG | + | chr8_3:53752517-53752536 | Msa1295600:CDS | 35.0% | |
| !! | AACTGATTTTCCAACCACTT+TGG | - | chr8_3:53752585-53752604 | None:intergenic | 35.0% |
| TACGTTGAACATCTTCTTTG+AGG | - | chr8_3:53752634-53752653 | None:intergenic | 35.0% | |
| TACGTATATACCTTAGGAGT+TGG | - | chr8_3:53752699-53752718 | None:intergenic | 35.0% | |
| GTGTAGTACGTATATACCTT+AGG | - | chr8_3:53752705-53752724 | None:intergenic | 35.0% | |
| ATCAAAGGACAAGATAGGAT+AGG | - | chr8_3:53753057-53753076 | None:intergenic | 35.0% | |
| ! | CAAGAACCTGAGAAGTATAT+AGG | - | chr8_3:53753363-53753382 | None:intergenic | 35.0% |
| ! | GGTTGGTTATTCAAGCTTAT+TGG | - | chr8_3:53753400-53753419 | None:intergenic | 35.0% |
| TACATAGATACGCCAGATAT+TGG | - | chr8_3:53753421-53753440 | None:intergenic | 35.0% | |
| CAAACTGTTTGAACAAGCAT+TGG | + | chr8_3:53752517-53752536 | Msa1295600:CDS | 35.0% | |
| !! | AACTGATTTTCCAACCACTT+TGG | - | chr8_3:53752585-53752604 | None:intergenic | 35.0% |
| TACGTTGAACATCTTCTTTG+AGG | - | chr8_3:53752634-53752653 | None:intergenic | 35.0% | |
| TACGTATATACCTTAGGAGT+TGG | - | chr8_3:53752699-53752718 | None:intergenic | 35.0% | |
| GTGTAGTACGTATATACCTT+AGG | - | chr8_3:53752705-53752724 | None:intergenic | 35.0% | |
| ATCAAAGGACAAGATAGGAT+AGG | - | chr8_3:53753057-53753076 | None:intergenic | 35.0% | |
| ! | CAAGAACCTGAGAAGTATAT+AGG | - | chr8_3:53753363-53753382 | None:intergenic | 35.0% |
| ! | GGTTGGTTATTCAAGCTTAT+TGG | - | chr8_3:53753400-53753419 | None:intergenic | 35.0% |
| TACATAGATACGCCAGATAT+TGG | - | chr8_3:53753421-53753440 | None:intergenic | 35.0% | |
| ATCAACAAATGGCAACCTCT+TGG | + | chr8_3:53752480-53752499 | Msa1295600:exon | 40.0% | |
| ATAGGGAAACTCCTGAAAGA+TGG | + | chr8_3:53752549-53752568 | Msa1295600:CDS | 40.0% | |
| TGTAACGAGGAAAAGGGATA+TGG | - | chr8_3:53752667-53752686 | None:intergenic | 40.0% | |
| !! | TATTTCTCTTGGGTTAGCGT+GGG | - | chr8_3:53753098-53753117 | None:intergenic | 40.0% |
| !! | ATATTTCTCTTGGGTTAGCG+TGG | - | chr8_3:53753099-53753118 | None:intergenic | 40.0% |
| TAGATACGCCAGATATTGGT+TGG | - | chr8_3:53753417-53753436 | None:intergenic | 40.0% | |
| CTGGCGTATCTATGTATCTA+TGG | + | chr8_3:53753425-53753444 | Msa1295600:three_prime_UTR | 40.0% | |
| ATTGCCACATTCAATTGGCA+GGG | - | chr8_3:53753478-53753497 | None:intergenic | 40.0% | |
| AAGGTAAAGCAACGAATACG+AGG | - | chr8_3:53753552-53753571 | None:intergenic | 40.0% | |
| ATCAACAAATGGCAACCTCT+TGG | + | chr8_3:53752480-53752499 | Msa1295600:exon | 40.0% | |
| ATAGGGAAACTCCTGAAAGA+TGG | + | chr8_3:53752549-53752568 | Msa1295600:CDS | 40.0% | |
| TGTAACGAGGAAAAGGGATA+TGG | - | chr8_3:53752667-53752686 | None:intergenic | 40.0% | |
| !! | TATTTCTCTTGGGTTAGCGT+GGG | - | chr8_3:53753098-53753117 | None:intergenic | 40.0% |
| !! | ATATTTCTCTTGGGTTAGCG+TGG | - | chr8_3:53753099-53753118 | None:intergenic | 40.0% |
| TAGATACGCCAGATATTGGT+TGG | - | chr8_3:53753417-53753436 | None:intergenic | 40.0% | |
| CTGGCGTATCTATGTATCTA+TGG | + | chr8_3:53753425-53753444 | Msa1295600:three_prime_UTR | 40.0% | |
| ATTGCCACATTCAATTGGCA+GGG | - | chr8_3:53753478-53753497 | None:intergenic | 40.0% | |
| AAGGTAAAGCAACGAATACG+AGG | - | chr8_3:53753552-53753571 | None:intergenic | 40.0% | |
| GCAACATTGTGCCATCTTTC+AGG | - | chr8_3:53752563-53752582 | None:intergenic | 45.0% | |
| ATGGCACAATGTTGCCAAAG+TGG | + | chr8_3:53752568-53752587 | Msa1295600:CDS | 45.0% | |
| CACAATGTTGCCAAAGTGGT+TGG | + | chr8_3:53752572-53752591 | Msa1295600:CDS | 45.0% | |
| GATGTTCAACGTATTGAGCG+TGG | + | chr8_3:53752641-53752660 | Msa1295600:CDS | 45.0% | |
| ! | AAAGAGCATGCATGGTCACA+AGG | - | chr8_3:53752738-53752757 | None:intergenic | 45.0% |
| ! | GAGCTACTAAAGAGCATGCA+TGG | - | chr8_3:53752746-53752765 | None:intergenic | 45.0% |
| !! | ATTTCTCTTGGGTTAGCGTG+GGG | - | chr8_3:53753097-53753116 | None:intergenic | 45.0% |
| GATTGCCACATTCAATTGGC+AGG | - | chr8_3:53753479-53753498 | None:intergenic | 45.0% | |
| GCAACATTGTGCCATCTTTC+AGG | - | chr8_3:53752563-53752582 | None:intergenic | 45.0% | |
| ATGGCACAATGTTGCCAAAG+TGG | + | chr8_3:53752568-53752587 | Msa1295600:CDS | 45.0% | |
| CACAATGTTGCCAAAGTGGT+TGG | + | chr8_3:53752572-53752591 | Msa1295600:CDS | 45.0% | |
| GATGTTCAACGTATTGAGCG+TGG | + | chr8_3:53752641-53752660 | Msa1295600:CDS | 45.0% | |
| ! | AAAGAGCATGCATGGTCACA+AGG | - | chr8_3:53752738-53752757 | None:intergenic | 45.0% |
| ! | GAGCTACTAAAGAGCATGCA+TGG | - | chr8_3:53752746-53752765 | None:intergenic | 45.0% |
| !! | ATTTCTCTTGGGTTAGCGTG+GGG | - | chr8_3:53753097-53753116 | None:intergenic | 45.0% |
| GATTGCCACATTCAATTGGC+AGG | - | chr8_3:53753479-53753498 | None:intergenic | 45.0% | |
| TGCACCCTGCCAATTGAATG+TGG | + | chr8_3:53753471-53753490 | Msa1295600:three_prime_UTR | 50.0% | |
| TGCACCCTGCCAATTGAATG+TGG | + | chr8_3:53753471-53753490 | Msa1295600:three_prime_UTR | 50.0% | |
| TGGCAACCTCTTGGACTGCA+AGG | + | chr8_3:53752489-53752508 | Msa1295600:CDS | 55.0% | |
| GTTCTGCCTTGCAGTCCAAG+AGG | - | chr8_3:53752498-53752517 | None:intergenic | 55.0% | |
| TGGCAACCTCTTGGACTGCA+AGG | + | chr8_3:53752489-53752508 | Msa1295600:CDS | 55.0% | |
| GTTCTGCCTTGCAGTCCAAG+AGG | - | chr8_3:53752498-53752517 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 53752406 | 53753669 | 53752406 | ID=Msa1295600;Name=Msa1295600 |
| chr8_3 | mRNA | 53752406 | 53753669 | 53752406 | ID=Msa1295600-mRNA-1;Parent=Msa1295600;Name=Msa1295600-mRNA-1;_AED=0.00;_eAED=0.00;_QI=82|0|0.5|1|0|0.5|2|294|72 |
| chr8_3 | exon | 53752406 | 53752706 | 53752406 | ID=Msa1295600-mRNA-1:exon:15436;Parent=Msa1295600-mRNA-1 |
| chr8_3 | exon | 53753376 | 53753669 | 53753376 | ID=Msa1295600-mRNA-1:exon:15437;Parent=Msa1295600-mRNA-1 |
| chr8_3 | five_prime_UTR | 53752406 | 53752487 | 53752406 | ID=Msa1295600-mRNA-1:five_prime_utr;Parent=Msa1295600-mRNA-1 |
| chr8_3 | CDS | 53752488 | 53752706 | 53752488 | ID=Msa1295600-mRNA-1:cds;Parent=Msa1295600-mRNA-1 |
| chr8_3 | three_prime_UTR | 53753376 | 53753669 | 53753376 | ID=Msa1295600-mRNA-1:three_prime_utr;Parent=Msa1295600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
