Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626470 | XP_013454581.1 | 94.774 | 287 | 14 | 1 | 129 | 414 | 818 | 1104 | 0.0 | 557 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626470 | sp|Q9LU41|ACA9_ARATH | 80.139 | 287 | 55 | 2 | 129 | 413 | 800 | 1086 | 7.30e-158 | 476 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626470 | A0A072UG00 | 94.774 | 287 | 14 | 1 | 129 | 414 | 818 | 1104 | 0.0 | 557 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0626470 | Msa0664160 | 0.905099 | 6.138997e-80 | -8.615850e-47 |
| Msa0626470 | Msa0886660 | 0.811041 | 8.535496e-51 | -8.615850e-47 |
| Msa0626470 | Msa1044090 | 0.811432 | 7.021106e-51 | -8.615850e-47 |
| Msa0201330 | Msa0626470 | 0.855784 | 4.998822e-62 | -8.615850e-47 |
| Msa0201370 | Msa0626470 | 0.814943 | 1.190702e-51 | -8.615850e-47 |
| Msa0243910 | Msa0626470 | 0.843516 | 1.335395e-58 | -8.615850e-47 |
| Msa0243930 | Msa0626470 | 0.823980 | 1.034179e-53 | -8.615850e-47 |
| Msa0243940 | Msa0626470 | 0.828564 | 8.384070e-55 | -8.615850e-47 |
| Msa0282590 | Msa0626470 | 0.805745 | 1.150836e-49 | -8.615850e-47 |
| Msa0586430 | Msa0626470 | 0.912309 | 2.257403e-83 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626470 | MtrunA17_Chr4g0002331 | 94.774 | 287 | 14 | 1 | 129 | 414 | 818 | 1104 | 0.0 | 557 |
| Msa0626470 | MtrunA17_Chr2g0298871 | 75.433 | 289 | 68 | 3 | 129 | 414 | 805 | 1093 | 1.14e-149 | 452 |
| Msa0626470 | MtrunA17_Chr6g0456201 | 66.797 | 256 | 79 | 1 | 141 | 396 | 762 | 1011 | 2.02e-114 | 358 |
| Msa0626470 | MtrunA17_Chr7g0260401 | 67.059 | 255 | 78 | 1 | 141 | 395 | 795 | 1043 | 4.47e-112 | 352 |
| Msa0626470 | MtrunA17_Chr8g0340261 | 63.281 | 256 | 71 | 2 | 141 | 396 | 314 | 546 | 1.36e-107 | 328 |
| Msa0626470 | MtrunA17_Chr2g0334201 | 72.193 | 187 | 51 | 1 | 227 | 413 | 1 | 186 | 2.72e-101 | 298 |
| Msa0626470 | MtrunA17_Chr8g0382071 | 57.692 | 286 | 117 | 3 | 109 | 393 | 734 | 1016 | 1.25e-100 | 322 |
| Msa0626470 | MtrunA17_Chr1g0173111 | 54.930 | 284 | 121 | 3 | 118 | 398 | 739 | 1018 | 3.13e-96 | 310 |
| Msa0626470 | MtrunA17_Chr3g0134771 | 53.047 | 279 | 120 | 3 | 118 | 391 | 744 | 1016 | 8.36e-94 | 303 |
| Msa0626470 | MtrunA17_Chr4g0054021 | 53.763 | 279 | 118 | 3 | 118 | 391 | 665 | 937 | 1.63e-92 | 298 |
| Msa0626470 | MtrunA17_Chr5g0401211 | 53.405 | 279 | 119 | 3 | 118 | 391 | 742 | 1014 | 3.85e-92 | 298 |
| Msa0626470 | MtrunA17_Chr8g0355421 | 51.383 | 253 | 121 | 1 | 141 | 393 | 757 | 1007 | 9.41e-80 | 265 |
| Msa0626470 | MtrunA17_Chr4g0002391 | 85.161 | 155 | 13 | 1 | 1 | 145 | 1 | 155 | 1.75e-75 | 248 |
| Msa0626470 | MtrunA17_Chr4g0020551 | 59.296 | 199 | 78 | 2 | 118 | 315 | 677 | 873 | 2.13e-70 | 238 |
| Msa0626470 | MtrunA17_Chr2g0300651 | 71.613 | 155 | 32 | 2 | 1 | 145 | 1 | 153 | 6.48e-59 | 203 |
| Msa0626470 | MtrunA17_Chr5g0447521 | 34.419 | 215 | 134 | 1 | 168 | 382 | 790 | 997 | 6.19e-40 | 152 |
| Msa0626470 | MtrunA17_Chr4g0005551 | 30.804 | 224 | 148 | 1 | 168 | 391 | 751 | 967 | 1.24e-35 | 139 |
| Msa0626470 | MtrunA17_Chr7g0263361 | 41.259 | 143 | 77 | 3 | 141 | 279 | 747 | 886 | 1.37e-24 | 106 |
| Msa0626470 | MtrunA17_Chr8g0346461 | 37.681 | 138 | 83 | 3 | 141 | 276 | 742 | 878 | 2.81e-22 | 99.8 |
| Msa0626470 | MtrunA17_Chr3g0134951 | 29.278 | 263 | 156 | 7 | 141 | 377 | 704 | 962 | 1.03e-21 | 97.8 |
| Msa0626470 | MtrunA17_Chr1g0147911 | 35.036 | 137 | 73 | 2 | 5 | 129 | 23 | 155 | 3.16e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626470 | AT3G21180.1 | 80.139 | 287 | 55 | 2 | 129 | 413 | 800 | 1086 | 7.42e-159 | 476 |
| Msa0626470 | AT5G57110.1 | 77.491 | 271 | 59 | 2 | 129 | 397 | 783 | 1053 | 5.76e-144 | 437 |
| Msa0626470 | AT5G57110.3 | 77.491 | 271 | 59 | 2 | 129 | 397 | 783 | 1053 | 5.76e-144 | 437 |
| Msa0626470 | AT5G57110.2 | 77.491 | 271 | 59 | 2 | 129 | 397 | 783 | 1053 | 5.76e-144 | 437 |
| Msa0626470 | AT4G29900.1 | 74.476 | 286 | 69 | 3 | 129 | 413 | 787 | 1069 | 6.48e-143 | 434 |
| Msa0626470 | AT4G29900.2 | 74.476 | 286 | 69 | 3 | 129 | 413 | 787 | 1069 | 6.48e-143 | 434 |
| Msa0626470 | AT3G63380.1 | 63.158 | 285 | 98 | 2 | 129 | 412 | 749 | 1027 | 9.36e-116 | 362 |
| Msa0626470 | AT3G22910.1 | 63.251 | 283 | 93 | 3 | 129 | 410 | 745 | 1017 | 1.04e-106 | 338 |
| Msa0626470 | AT3G57330.2 | 56.818 | 264 | 111 | 2 | 129 | 391 | 689 | 950 | 3.20e-94 | 303 |
| Msa0626470 | AT3G57330.1 | 56.818 | 264 | 111 | 2 | 129 | 391 | 744 | 1005 | 6.49e-94 | 304 |
| Msa0626470 | AT1G27770.3 | 53.047 | 279 | 120 | 3 | 118 | 391 | 682 | 954 | 9.25e-94 | 302 |
| Msa0626470 | AT1G27770.2 | 53.047 | 279 | 120 | 3 | 118 | 391 | 671 | 943 | 1.08e-93 | 302 |
| Msa0626470 | AT4G37640.1 | 55.636 | 275 | 119 | 2 | 118 | 391 | 742 | 1014 | 3.08e-93 | 302 |
| Msa0626470 | AT1G27770.4 | 53.047 | 279 | 120 | 3 | 118 | 391 | 745 | 1017 | 3.09e-93 | 302 |
| Msa0626470 | AT1G27770.1 | 53.047 | 279 | 120 | 3 | 118 | 391 | 745 | 1017 | 3.09e-93 | 302 |
| Msa0626470 | AT2G41560.2 | 55.263 | 266 | 112 | 3 | 129 | 391 | 645 | 906 | 1.22e-92 | 298 |
| Msa0626470 | AT2G41560.3 | 55.263 | 266 | 112 | 3 | 129 | 391 | 645 | 906 | 1.22e-92 | 298 |
| Msa0626470 | AT2G41560.4 | 55.263 | 266 | 112 | 3 | 129 | 391 | 645 | 906 | 1.22e-92 | 298 |
| Msa0626470 | AT2G41560.1 | 55.263 | 266 | 112 | 3 | 129 | 391 | 747 | 1008 | 3.80e-92 | 299 |
| Msa0626470 | AT2G22950.1 | 54.545 | 275 | 122 | 2 | 118 | 391 | 743 | 1015 | 3.56e-91 | 296 |
| Msa0626470 | AT5G53010.1 | 45.000 | 260 | 128 | 7 | 141 | 398 | 802 | 1048 | 3.42e-51 | 185 |
| Msa0626470 | AT1G07670.2 | 29.781 | 319 | 160 | 10 | 141 | 398 | 742 | 1057 | 8.85e-26 | 110 |
| Msa0626470 | AT1G07670.1 | 29.781 | 319 | 160 | 10 | 141 | 398 | 742 | 1057 | 8.85e-26 | 110 |
| Msa0626470 | AT1G07810.1 | 30.345 | 290 | 146 | 8 | 141 | 377 | 742 | 1028 | 1.55e-25 | 110 |
| Msa0626470 | AT4G00900.2 | 27.692 | 325 | 165 | 8 | 141 | 411 | 738 | 1046 | 4.75e-23 | 102 |
| Msa0626470 | AT4G00900.1 | 27.692 | 325 | 165 | 8 | 141 | 411 | 738 | 1046 | 4.75e-23 | 102 |
| Msa0626470 | AT1G10130.1 | 29.392 | 296 | 173 | 10 | 141 | 410 | 703 | 988 | 3.67e-21 | 96.7 |
| Msa0626470 | AT4G31540.1 | 41.085 | 129 | 64 | 2 | 9 | 127 | 17 | 143 | 3.35e-15 | 78.2 |
| Msa0626470 | AT1G51640.1 | 38.971 | 136 | 70 | 5 | 2 | 128 | 3 | 134 | 8.89e-15 | 76.6 |
Find 83 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAGAAGTTAATAACTTTC+TGG | 0.157810 | 4_3:-6054002 | None:intergenic |
| CGTCTCTTCATGGGAATTAT+TGG | 0.173663 | 4_3:+6056970 | Msa0626470:CDS |
| TGGCTTGTTTCTCTCATAAT+TGG | 0.242940 | 4_3:+6057161 | Msa0626470:CDS |
| GGCAGATATTGGTCTTTCTA+TGG | 0.243538 | 4_3:+6054744 | Msa0626470:intron |
| TGGAATAACCTTTATACTTC+AGG | 0.282686 | 4_3:+6056990 | Msa0626470:CDS |
| GACCTCCTCAATCGTCTAAT+TGG | 0.292043 | 4_3:-6057382 | None:intergenic |
| CCATGTTCAACATCTGAAAA+TGG | 0.300467 | 4_3:-6054151 | None:intergenic |
| CGTACGTGACAATGGTGTTT+TGG | 0.311842 | 4_3:-6057350 | None:intergenic |
| CTCTCATAATTGGCCTTGTC+AGG | 0.323851 | 4_3:+6057171 | Msa0626470:CDS |
| CGGAAGACATTCATTTCATC+TGG | 0.328177 | 4_3:-6056931 | None:intergenic |
| CACACTTGGGGCCCTTGCCC+TGG | 0.333863 | 4_3:+6055912 | Msa0626470:CDS |
| GGTACCTGTACTGCATTTAA+AGG | 0.348072 | 4_3:-6055247 | None:intergenic |
| CCTCAACGGTGAGGCTTGAC+TGG | 0.362489 | 4_3:+6057132 | Msa0626470:CDS |
| CTGTTGGTGGTTCCGTAGCC+AGG | 0.363675 | 4_3:-6055930 | None:intergenic |
| CACATGATATTTGTAATAAG+AGG | 0.365042 | 4_3:-6056503 | None:intergenic |
| AAGCTCAGATATTATAATCT+TGG | 0.366691 | 4_3:+6054795 | Msa0626470:CDS |
| CATATTCACCTGAAGTATAA+AGG | 0.370719 | 4_3:-6056998 | None:intergenic |
| GACTAAGAACCGTCTCTTCA+TGG | 0.399091 | 4_3:+6056960 | Msa0626470:CDS |
| TTCTTCAAGCTTCTTTGTGT+TGG | 0.400561 | 4_3:-6054287 | None:intergenic |
| AGCTGGCCTCTTGCTATAGC+TGG | 0.406347 | 4_3:+6057310 | Msa0626470:intron |
| ATAGTCATCATTGAGTTCCT+TGG | 0.445418 | 4_3:+6057101 | Msa0626470:CDS |
| ATTCAGCGGGTAAAACTCAT+TGG | 0.451085 | 4_3:-6054401 | None:intergenic |
| ATTTATGTAGGTTGTCCGCT+GGG | 0.451320 | 4_3:+6055117 | Msa0626470:intron |
| TGGGCTTTAGTATCTTGCTT+GGG | 0.452087 | 4_3:-6056706 | None:intergenic |
| AATCCAAACCTTCGACCAAC+TGG | 0.452246 | 4_3:-6055973 | None:intergenic |
| TATTTATGTAGGTTGTCCGC+TGG | 0.455596 | 4_3:+6055116 | Msa0626470:intron |
| CGTTGACAGTAAGCTGGAAC+TGG | 0.456033 | 4_3:-6055174 | None:intergenic |
| GTGGTTCCGTAGCCAGGGCA+AGG | 0.456757 | 4_3:-6055924 | None:intergenic |
| TTTGTGGGTCAACCTTATCA+TGG | 0.463902 | 4_3:+6055888 | Msa0626470:CDS |
| GAGGTCTCGTTCTTCGCAAT+AGG | 0.467426 | 4_3:+6057399 | Msa0626470:CDS |
| ACCTTATCATGGACACACTT+GGG | 0.468613 | 4_3:+6055899 | Msa0626470:CDS |
| TATTCTTCACTTGGAAGCCA+TGG | 0.473927 | 4_3:-6056726 | None:intergenic |
| CAACTGGTGATCTGTGCATT+AGG | 0.477843 | 4_3:-6055957 | None:intergenic |
| AACCTTATCATGGACACACT+TGG | 0.478158 | 4_3:+6055898 | Msa0626470:CDS |
| TGGGGCCCTTGCCCTGGCTA+CGG | 0.478203 | 4_3:+6055918 | Msa0626470:CDS |
| CTTGCAAGGACAAACACCTT+TGG | 0.480696 | 4_3:-6054090 | None:intergenic |
| CCCCAAGTGTGTCCATGATA+AGG | 0.481465 | 4_3:-6055900 | None:intergenic |
| CCTTGGAAAGTTTGCCTCAA+CGG | 0.483107 | 4_3:+6057118 | Msa0626470:CDS |
| AAAAGCACTTCTCAACCAAC+TGG | 0.485376 | 4_3:-6054347 | None:intergenic |
| TAACTTTGCATCAGTTGTAA+AGG | 0.489115 | 4_3:+6054822 | Msa0626470:CDS |
| CTGTGCATTAGGTGGTCTGT+TGG | 0.497701 | 4_3:-6055946 | None:intergenic |
| ATATCAAAGTATTCTTCACT+TGG | 0.497973 | 4_3:-6056735 | None:intergenic |
| TGCATTAGGTGGTCTGTTGG+TGG | 0.499670 | 4_3:-6055943 | None:intergenic |
| ATGGGCTTTAGTATCTTGCT+TGG | 0.501456 | 4_3:-6056707 | None:intergenic |
| ACTTTGCAATTGCATAGAGA+TGG | 0.503049 | 4_3:-6054125 | None:intergenic |
| GCAGATATTGGTCTTTCTAT+GGG | 0.505291 | 4_3:+6054745 | Msa0626470:CDS |
| GGATTTAAGTGAAGCTTGCA+AGG | 0.514573 | 4_3:-6054104 | None:intergenic |
| TGAAGCCAATTAGACGATTG+AGG | 0.518533 | 4_3:+6057377 | Msa0626470:CDS |
| TGTTCCTTTAAATGCAGTAC+AGG | 0.519720 | 4_3:+6055243 | Msa0626470:CDS |
| AGGATTTGTTTACATTCAGC+GGG | 0.525653 | 4_3:-6054414 | None:intergenic |
| AAGGATTTGTTTACATTCAG+CGG | 0.531954 | 4_3:-6054415 | None:intergenic |
| GGTCTTTCTATGGGCATCCA+AGG | 0.533731 | 4_3:+6054754 | Msa0626470:CDS |
| ATTCTTCACTTGGAAGCCAT+GGG | 0.538217 | 4_3:-6056725 | None:intergenic |
| CCGTTGAGGCAAACTTTCCA+AGG | 0.544086 | 4_3:-6057118 | None:intergenic |
| CTTCTCGTTCTGAACTTCTG+CGG | 0.555228 | 4_3:+6056670 | Msa0626470:CDS |
| GTGGAGAAACTTGATCGTAC+AGG | 0.556725 | 4_3:+6056523 | Msa0626470:CDS |
| ACTAAGAACCGTCTCTTCAT+GGG | 0.557577 | 4_3:+6056961 | Msa0626470:CDS |
| CAGCAACGTTGACAGTAAGC+TGG | 0.564392 | 4_3:-6055180 | None:intergenic |
| GTTGTGGCAGCAATAAGTTC+TGG | 0.568605 | 4_3:+6055217 | Msa0626470:CDS |
| ATTGCAAGTTAGCAACCAGT+TGG | 0.569658 | 4_3:+6054332 | Msa0626470:CDS |
| AACTTTCCAGCTATAGCAAG+AGG | 0.574404 | 4_3:-6057316 | None:intergenic |
| GACGGTTCTTAGTCACTCCT+CGG | 0.577142 | 4_3:-6056951 | None:intergenic |
| TGGTTCCGTAGCCAGGGCAA+GGG | 0.577552 | 4_3:-6055923 | None:intergenic |
| GATTACAGCTTCTTAACCAA+AGG | 0.584800 | 4_3:+6054074 | Msa0626470:CDS |
| TGCTCTTGTAATAAATGTTG+TGG | 0.592458 | 4_3:+6055201 | Msa0626470:CDS |
| TGAGGCTTGACTGGAAGTTG+TGG | 0.593902 | 4_3:+6057141 | Msa0626470:CDS |
| CAATAATTCCCATGAAGAGA+CGG | 0.593956 | 4_3:-6056969 | None:intergenic |
| TGTTGGTGGTTCCGTAGCCA+GGG | 0.595964 | 4_3:-6055929 | None:intergenic |
| CTGGTGATCTGTGCATTAGG+TGG | 0.598175 | 4_3:-6055954 | None:intergenic |
| ACAGATCACCAGTTGGTCGA+AGG | 0.608658 | 4_3:+6055965 | Msa0626470:CDS |
| CTCTTATTACAAATATCATG+TGG | 0.614036 | 4_3:+6056504 | Msa0626470:CDS |
| CCTTATCATGGACACACTTG+GGG | 0.623707 | 4_3:+6055900 | Msa0626470:CDS |
| AAGCAAGATACTAAAGCCCA+TGG | 0.623978 | 4_3:+6056709 | Msa0626470:CDS |
| GAAAGTTTGCCTCAACGGTG+AGG | 0.628398 | 4_3:+6057123 | Msa0626470:CDS |
| TTTATGTAGGTTGTCCGCTG+GGG | 0.630911 | 4_3:+6055118 | Msa0626470:intron |
| TTCATGAACGTACGTGACAA+TGG | 0.644655 | 4_3:-6057358 | None:intergenic |
| GATGAAATGAATGTCTTCCG+AGG | 0.650175 | 4_3:+6056934 | Msa0626470:CDS |
| CATATACAGAGCGGCCCCAG+CGG | 0.663901 | 4_3:-6055132 | None:intergenic |
| CCAGTCAAGCCTCACCGTTG+AGG | 0.680474 | 4_3:-6057132 | None:intergenic |
| CTAATGCACAGATCACCAGT+TGG | 0.687793 | 4_3:+6055958 | Msa0626470:CDS |
| TTTGGCGAACTAACCTGACA+AGG | 0.688537 | 4_3:-6057184 | None:intergenic |
| GAATATTTGCATATACAGAG+CGG | 0.713360 | 4_3:-6055141 | None:intergenic |
| AGCCAATTAGACGATTGAGG+AGG | 0.730363 | 4_3:+6057380 | Msa0626470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTTCGTAAGATTAAAA+TGG | + | chr4_3:6056567-6056586 | Msa0626470:intron | 15.0% |
| !! | AAAGAATACAATTAAACAAT+AGG | - | chr4_3:6056619-6056638 | None:intergenic | 15.0% |
| !! | AACTGAAGAAAATAAAACAA+CGG | - | chr4_3:6054961-6054980 | None:intergenic | 20.0% |
| !! | GTATGTTTCAATATTTATGT+AGG | + | chr4_3:6055105-6055124 | Msa0626470:intron | 20.0% |
| !! | TGTATCCATTAATATAATTG+TGG | + | chr4_3:6055732-6055751 | Msa0626470:intron | 20.0% |
| !! | TTCTGAATGTTAATTGTTAT+TGG | + | chr4_3:6055763-6055782 | Msa0626470:intron | 20.0% |
| !! | CTTAATTAAACAAGATACAA+GGG | - | chr4_3:6056339-6056358 | None:intergenic | 20.0% |
| !! | ACTTAATTAAACAAGATACA+AGG | - | chr4_3:6056340-6056359 | None:intergenic | 20.0% |
| !!! | TTTTAACTATGATCTTTTCT+TGG | + | chr4_3:6056468-6056487 | Msa0626470:intron | 20.0% |
| !!! | TTTAACTATGATCTTTTCTT+GGG | + | chr4_3:6056469-6056488 | Msa0626470:intron | 20.0% |
| !! | ATAGTAAATTATTGAATGTG+TGG | + | chr4_3:6056790-6056809 | Msa0626470:intron | 20.0% |
| !! | AATTATACAAATACATTTGC+TGG | + | chr4_3:6056834-6056853 | Msa0626470:intron | 20.0% |
| !! | AAAATTGTTTACTCAAGAAT+AGG | - | chr4_3:6056868-6056887 | None:intergenic | 20.0% |
| !!! | TTTTCAATGTGTTACTCAAT+TGG | + | chr4_3:6054216-6054235 | Msa0626470:CDS | 25.0% |
| !!! | AAATGTCCTTTTTGTTTTGT+AGG | + | chr4_3:6054723-6054742 | Msa0626470:intron | 25.0% |
| ! | AAGCTCAGATATTATAATCT+TGG | + | chr4_3:6054795-6054814 | Msa0626470:CDS | 25.0% |
| ! | AATTTAGTGAACTGGTAAAT+TGG | - | chr4_3:6055060-6055079 | None:intergenic | 25.0% |
| ! | AATCACAAGAAGAAAGAAAA+GGG | - | chr4_3:6055272-6055291 | None:intergenic | 25.0% |
| ! | TAATCACAAGAAGAAAGAAA+AGG | - | chr4_3:6055273-6055292 | None:intergenic | 25.0% |
| ! | GATATCCATAGTATAGTAAT+AGG | + | chr4_3:6055562-6055581 | Msa0626470:intron | 25.0% |
| ! | CTAAGCCACAATTATATTAA+TGG | - | chr4_3:6055740-6055759 | None:intergenic | 25.0% |
| ! | ACCAAGACTTTAAATTAAGT+AGG | + | chr4_3:6055788-6055807 | Msa0626470:intron | 25.0% |
| ! | CCAAGACTTTAAATTAAGTA+GGG | + | chr4_3:6055789-6055808 | Msa0626470:intron | 25.0% |
| !! | GTTTTCTCAACAAAAACTTA+TGG | + | chr4_3:6056151-6056170 | Msa0626470:intron | 25.0% |
| ! | TATGTTCATTAGTTGCAAAA+TGG | - | chr4_3:6056216-6056235 | None:intergenic | 25.0% |
| !! | AGAAAAAGTGTAATACTTCA+TGG | - | chr4_3:6056260-6056279 | None:intergenic | 25.0% |
| !!! | CATTTTTAACTCAATGTTTG+AGG | - | chr4_3:6056443-6056462 | None:intergenic | 25.0% |
| ! | CACATGATATTTGTAATAAG+AGG | - | chr4_3:6056506-6056525 | None:intergenic | 25.0% |
| ! | CTCTTATTACAAATATCATG+TGG | + | chr4_3:6056504-6056523 | Msa0626470:CDS | 25.0% |
| !! | ATATCAAAGTATTCTTCACT+TGG | - | chr4_3:6056738-6056757 | None:intergenic | 25.0% |
| ! | AATTTACTATTCCACTTACT+TGG | - | chr4_3:6056780-6056799 | None:intergenic | 25.0% |
| ! | ATTTGTATAATTGCACCTAA+AGG | - | chr4_3:6056826-6056845 | None:intergenic | 25.0% |
| ! | TTTACGAACAGAAAAACAAA+AGG | - | chr4_3:6057027-6057046 | None:intergenic | 25.0% |
| ! | ATGATGACTATCTGAAAATT+TGG | - | chr4_3:6057092-6057111 | None:intergenic | 25.0% |
| ! | GATTAAATGCTAATGAAGTT+TGG | - | chr4_3:6057205-6057224 | None:intergenic | 25.0% |
| GCTAGAAGTTAATAACTTTC+TGG | - | chr4_3:6054005-6054024 | None:intergenic | 30.0% | |
| ! | AAGGATTTGTTTACATTCAG+CGG | - | chr4_3:6054418-6054437 | None:intergenic | 30.0% |
| CAATTCTTGCAATATTCTCA+AGG | - | chr4_3:6054437-6054456 | None:intergenic | 30.0% | |
| ! | TGCTTTTCACAAACTTCTAA+TGG | + | chr4_3:6054525-6054544 | Msa0626470:intron | 30.0% |
| !!! | GACATTTTTTCAGTGTAAAC+AGG | - | chr4_3:6054710-6054729 | None:intergenic | 30.0% |
| TATCTGCCTACAAAACAAAA+AGG | - | chr4_3:6054732-6054751 | None:intergenic | 30.0% | |
| !!! | TTTGTTTTGTAGGCAGATAT+TGG | + | chr4_3:6054733-6054752 | Msa0626470:intron | 30.0% |
| TAACTTTGCATCAGTTGTAA+AGG | + | chr4_3:6054822-6054841 | Msa0626470:CDS | 30.0% | |
| TAGAGTCTTAAACCATTACA+TGG | - | chr4_3:6054911-6054930 | None:intergenic | 30.0% | |
| ! | TTTACATCATTTTGCCCTTT+CGG | + | chr4_3:6054991-6055010 | Msa0626470:intron | 30.0% |
| !!! | CCAAATTTTTTAAGCCGAAA+GGG | - | chr4_3:6055008-6055027 | None:intergenic | 30.0% |
| TGGTAAATTGGAATGTTTCT+CGG | - | chr4_3:6055048-6055067 | None:intergenic | 30.0% | |
| GATTGATCAATTTAGTGAAC+TGG | - | chr4_3:6055068-6055087 | None:intergenic | 30.0% | |
| GAATATTTGCATATACAGAG+CGG | - | chr4_3:6055144-6055163 | None:intergenic | 30.0% | |
| TGCTCTTGTAATAAATGTTG+TGG | + | chr4_3:6055201-6055220 | Msa0626470:CDS | 30.0% | |
| ATCACAAGAAGAAAGAAAAG+GGG | - | chr4_3:6055271-6055290 | None:intergenic | 30.0% | |
| TGAACAATGCTACAAATTTG+TGG | - | chr4_3:6055375-6055394 | None:intergenic | 30.0% | |
| ATCCATAGTATAGTAATAGG+TGG | + | chr4_3:6055565-6055584 | Msa0626470:intron | 30.0% | |
| ! | CCCTACTTAATTTAAAGTCT+TGG | - | chr4_3:6055792-6055811 | None:intergenic | 30.0% |
| ACACTCTTAATTCTTAAAGC+TGG | + | chr4_3:6056042-6056061 | Msa0626470:intron | 30.0% | |
| CACTCTTAATTCTTAAAGCT+GGG | + | chr4_3:6056043-6056062 | Msa0626470:intron | 30.0% | |
| GTATAAAGTTCAACTGTGAA+GGG | - | chr4_3:6056387-6056406 | None:intergenic | 30.0% | |
| AGTATAAAGTTCAACTGTGA+AGG | - | chr4_3:6056388-6056407 | None:intergenic | 30.0% | |
| ATTGTATTCTTTGTCATCTC+AGG | + | chr4_3:6056627-6056646 | Msa0626470:intron | 30.0% | |
| TGAACTCATTGAATATCTGT+TGG | - | chr4_3:6056900-6056919 | None:intergenic | 30.0% | |
| TGGAATAACCTTTATACTTC+AGG | + | chr4_3:6056990-6057009 | Msa0626470:CDS | 30.0% | |
| CATATTCACCTGAAGTATAA+AGG | - | chr4_3:6057001-6057020 | None:intergenic | 30.0% | |
| CTTTATACTTCAGGTGAATA+TGG | + | chr4_3:6056999-6057018 | Msa0626470:intron | 30.0% | |
| GATTACAGCTTCTTAACCAA+AGG | + | chr4_3:6054074-6054093 | Msa0626470:CDS | 35.0% | |
| ACTTTGCAATTGCATAGAGA+TGG | - | chr4_3:6054128-6054147 | None:intergenic | 35.0% | |
| CCATGTTCAACATCTGAAAA+TGG | - | chr4_3:6054154-6054173 | None:intergenic | 35.0% | |
| ! | CCATTTTCAGATGTTGAACA+TGG | + | chr4_3:6054151-6054170 | Msa0626470:CDS | 35.0% |
| TTCTTCAAGCTTCTTTGTGT+TGG | - | chr4_3:6054290-6054309 | None:intergenic | 35.0% | |
| ! | AGGATTTGTTTACATTCAGC+GGG | - | chr4_3:6054417-6054436 | None:intergenic | 35.0% |
| !! | GCAGATATTGGTCTTTCTAT+GGG | + | chr4_3:6054745-6054764 | Msa0626470:CDS | 35.0% |
| ! | AAGGTAAGCATCGTGTTTAT+TGG | + | chr4_3:6054841-6054860 | Msa0626470:intron | 35.0% |
| ACGGCAAACGAAAAAAGTAA+TGG | - | chr4_3:6054942-6054961 | None:intergenic | 35.0% | |
| CCCTTTCGGCTTAAAAAATT+TGG | + | chr4_3:6055005-6055024 | Msa0626470:intron | 35.0% | |
| !!! | GCCAAATTTTTTAAGCCGAA+AGG | - | chr4_3:6055009-6055028 | None:intergenic | 35.0% |
| TGTTCCTTTAAATGCAGTAC+AGG | + | chr4_3:6055243-6055262 | Msa0626470:CDS | 35.0% | |
| !! | AATTTGTGGCCTTTAAAGCT+TGG | - | chr4_3:6055361-6055380 | None:intergenic | 35.0% |
| !!! | AGCAAGCAAAGGTACTTTTA+GGG | - | chr4_3:6055437-6055456 | None:intergenic | 35.0% |
| ! | GTGAAAAGACAAATTGACTC+TGG | + | chr4_3:6055467-6055486 | Msa0626470:intron | 35.0% |
| ! | AAAGACAAATTGACTCTGGT+TGG | + | chr4_3:6055471-6055490 | Msa0626470:intron | 35.0% |
| TGCCACCTATTACTATACTA+TGG | - | chr4_3:6055570-6055589 | None:intergenic | 35.0% | |
| !! | GCGTTTTCAATTTTGATCCT+TGG | + | chr4_3:6056111-6056130 | Msa0626470:intron | 35.0% |
| CAATAATTCCCATGAAGAGA+CGG | - | chr4_3:6056972-6056991 | None:intergenic | 35.0% | |
| ATAGTCATCATTGAGTTCCT+TGG | + | chr4_3:6057101-6057120 | Msa0626470:CDS | 35.0% | |
| !! | TGGCTTGTTTCTCTCATAAT+TGG | + | chr4_3:6057161-6057180 | Msa0626470:CDS | 35.0% |
| TAATCATGTGCTCATGTTCT+TGG | + | chr4_3:6057220-6057239 | Msa0626470:intron | 35.0% | |
| CTGTGAGATAGCAAAAACAA+TGG | - | chr4_3:6057292-6057311 | None:intergenic | 35.0% | |
| GGATTTAAGTGAAGCTTGCA+AGG | - | chr4_3:6054107-6054126 | None:intergenic | 40.0% | |
| ATTGCAAGTTAGCAACCAGT+TGG | + | chr4_3:6054332-6054351 | Msa0626470:CDS | 40.0% | |
| !! | AAAAGCACTTCTCAACCAAC+TGG | - | chr4_3:6054350-6054369 | None:intergenic | 40.0% |
| ATTCAGCGGGTAAAACTCAT+TGG | - | chr4_3:6054404-6054423 | None:intergenic | 40.0% | |
| GAATTGCAAGCCTTAGAGAA+CGG | + | chr4_3:6054451-6054470 | Msa0626470:intron | 40.0% | |
| !! | GGCAGATATTGGTCTTTCTA+TGG | + | chr4_3:6054744-6054763 | Msa0626470:intron | 40.0% |
| ! | CTTTTGCAACTTCAGTTCCT+TGG | - | chr4_3:6054774-6054793 | None:intergenic | 40.0% |
| ATGGCAAAAACGTGGGAAAA+AGG | - | chr4_3:6054892-6054911 | None:intergenic | 40.0% | |
| CCATTACATGGCAAAAACGT+GGG | - | chr4_3:6054899-6054918 | None:intergenic | 40.0% | |
| ACCATTACATGGCAAAAACG+TGG | - | chr4_3:6054900-6054919 | None:intergenic | 40.0% | |
| ATTTGGCTATGAACTTCCCA+TGG | + | chr4_3:6055022-6055041 | Msa0626470:intron | 40.0% | |
| TATTTATGTAGGTTGTCCGC+TGG | + | chr4_3:6055116-6055135 | Msa0626470:intron | 40.0% | |
| ATTTATGTAGGTTGTCCGCT+GGG | + | chr4_3:6055117-6055136 | Msa0626470:intron | 40.0% | |
| GGTACCTGTACTGCATTTAA+AGG | - | chr4_3:6055250-6055269 | None:intergenic | 40.0% | |
| ! | GTAATGCGACCAAGCTTTAA+AGG | + | chr4_3:6055349-6055368 | Msa0626470:intron | 40.0% |
| !!! | CAGCAAGCAAAGGTACTTTT+AGG | - | chr4_3:6055438-6055457 | None:intergenic | 40.0% |
| !! | CTAAAAGTACCTTTGCTTGC+TGG | + | chr4_3:6055436-6055455 | Msa0626470:intron | 40.0% |
| TGTAAAGTGTATCGCTAGAG+TGG | + | chr4_3:6055522-6055541 | Msa0626470:intron | 40.0% | |
| GTAAAGTGTATCGCTAGAGT+GGG | + | chr4_3:6055523-6055542 | Msa0626470:intron | 40.0% | |
| CTCTGACGTCTTATCTGTTT+GGG | + | chr4_3:6055604-6055623 | Msa0626470:intron | 40.0% | |
| AACGCAGTAAGAGTTCTGTA+AGG | - | chr4_3:6055640-6055659 | None:intergenic | 40.0% | |
| TACAGAACTCTTACTGCGTT+TGG | + | chr4_3:6055640-6055659 | Msa0626470:intron | 40.0% | |
| ACAGAACTCTTACTGCGTTT+GGG | + | chr4_3:6055641-6055660 | Msa0626470:intron | 40.0% | |
| !! | CTACTTTTCTCATGCAGTTC+AGG | + | chr4_3:6055690-6055709 | Msa0626470:intron | 40.0% |
| !!! | TTTTTTAACGCACCTGCTCT+TGG | + | chr4_3:6055857-6055876 | Msa0626470:intron | 40.0% |
| ! | TTTTTAACGCACCTGCTCTT+GGG | + | chr4_3:6055858-6055877 | Msa0626470:intron | 40.0% |
| TTTGTGGGTCAACCTTATCA+TGG | + | chr4_3:6055888-6055907 | Msa0626470:CDS | 40.0% | |
| AACCTTATCATGGACACACT+TGG | + | chr4_3:6055898-6055917 | Msa0626470:CDS | 40.0% | |
| ACCTTATCATGGACACACTT+GGG | + | chr4_3:6055899-6055918 | Msa0626470:CDS | 40.0% | |
| CTTAATTCTTAAAGCTGGGC+TGG | + | chr4_3:6056047-6056066 | Msa0626470:intron | 40.0% | |
| TATGCACACTCATGTACACA+TGG | + | chr4_3:6056076-6056095 | Msa0626470:intron | 40.0% | |
| TTCCAAGAGCAGAAAATCAG+TGG | + | chr4_3:6056279-6056298 | Msa0626470:intron | 40.0% | |
| TCCAAGAGCAGAAAATCAGT+GGG | + | chr4_3:6056280-6056299 | Msa0626470:intron | 40.0% | |
| AGACTACACAATGCACACTT+AGG | - | chr4_3:6056312-6056331 | None:intergenic | 40.0% | |
| ! | TGATCTTTTCTTGGGCTTTC+AGG | + | chr4_3:6056477-6056496 | Msa0626470:intron | 40.0% |
| ! | GATCTTTTCTTGGGCTTTCA+GGG | + | chr4_3:6056478-6056497 | Msa0626470:intron | 40.0% |
| ! | TGGGCTTTAGTATCTTGCTT+GGG | - | chr4_3:6056709-6056728 | None:intergenic | 40.0% |
| ! | ATGGGCTTTAGTATCTTGCT+TGG | - | chr4_3:6056710-6056729 | None:intergenic | 40.0% |
| AAGCAAGATACTAAAGCCCA+TGG | + | chr4_3:6056709-6056728 | Msa0626470:CDS | 40.0% | |
| ATTCTTCACTTGGAAGCCAT+GGG | - | chr4_3:6056728-6056747 | None:intergenic | 40.0% | |
| TATTCTTCACTTGGAAGCCA+TGG | - | chr4_3:6056729-6056748 | None:intergenic | 40.0% | |
| TGTGGAATAGAGAAGCCTTT+AGG | + | chr4_3:6056808-6056827 | Msa0626470:intron | 40.0% | |
| CGGAAGACATTCATTTCATC+TGG | - | chr4_3:6056934-6056953 | None:intergenic | 40.0% | |
| GATGAAATGAATGTCTTCCG+AGG | + | chr4_3:6056934-6056953 | Msa0626470:CDS | 40.0% | |
| ACTAAGAACCGTCTCTTCAT+GGG | + | chr4_3:6056961-6056980 | Msa0626470:CDS | 40.0% | |
| CGTCTCTTCATGGGAATTAT+TGG | + | chr4_3:6056970-6056989 | Msa0626470:CDS | 40.0% | |
| CAATGGTCATGATCAAGTCT+CGG | - | chr4_3:6057275-6057294 | None:intergenic | 40.0% | |
| !! | TGTTTTTGCTATCTCACAGC+TGG | + | chr4_3:6057293-6057312 | Msa0626470:intron | 40.0% |
| AACTTTCCAGCTATAGCAAG+AGG | - | chr4_3:6057319-6057338 | None:intergenic | 40.0% | |
| ! | GTACGTGACAATGGTGTTTT+GGG | - | chr4_3:6057352-6057371 | None:intergenic | 40.0% |
| TTCATGAACGTACGTGACAA+TGG | - | chr4_3:6057361-6057380 | None:intergenic | 40.0% | |
| TGAAGCCAATTAGACGATTG+AGG | + | chr4_3:6057377-6057396 | Msa0626470:CDS | 40.0% | |
| CTTGCAAGGACAAACACCTT+TGG | - | chr4_3:6054093-6054112 | None:intergenic | 45.0% | |
| ! | CCCACGTTTTTGCCATGTAA+TGG | + | chr4_3:6054896-6054915 | Msa0626470:intron | 45.0% |
| TTGGAATGTTTCTCGGCCAT+GGG | - | chr4_3:6055041-6055060 | None:intergenic | 45.0% | |
| ATTGGAATGTTTCTCGGCCA+TGG | - | chr4_3:6055042-6055061 | None:intergenic | 45.0% | |
| TTTATGTAGGTTGTCCGCTG+GGG | + | chr4_3:6055118-6055137 | Msa0626470:intron | 45.0% | |
| GTTGTGGCAGCAATAAGTTC+TGG | + | chr4_3:6055217-6055236 | Msa0626470:CDS | 45.0% | |
| TGCTCCAAAACCAGAACAGA+AGG | + | chr4_3:6055316-6055335 | Msa0626470:intron | 45.0% | |
| TCCAAAACCAGAACAGAAGG+TGG | + | chr4_3:6055319-6055338 | Msa0626470:intron | 45.0% | |
| !!! | TCCACCTTCTGTTCTGGTTT+TGG | - | chr4_3:6055323-6055342 | None:intergenic | 45.0% |
| CTACTTTCCACCTTCTGTTC+TGG | - | chr4_3:6055329-6055348 | None:intergenic | 45.0% | |
| CAGAACAGAAGGTGGAAAGT+AGG | + | chr4_3:6055327-6055346 | Msa0626470:intron | 45.0% | |
| ! | AGTACCTTTGCTTGCTGGTA+AGG | + | chr4_3:6055441-6055460 | Msa0626470:intron | 45.0% |
| CTTACCTTACCAGCAAGCAA+AGG | - | chr4_3:6055448-6055467 | None:intergenic | 45.0% | |
| GCTCTGACGTCTTATCTGTT+TGG | + | chr4_3:6055603-6055622 | Msa0626470:intron | 45.0% | |
| CTCATGCAGTTCAGGAGAAA+AGG | + | chr4_3:6055698-6055717 | Msa0626470:intron | 45.0% | |
| CCTTATCATGGACACACTTG+GGG | + | chr4_3:6055900-6055919 | Msa0626470:CDS | 45.0% | |
| CAACTGGTGATCTGTGCATT+AGG | - | chr4_3:6055960-6055979 | None:intergenic | 45.0% | |
| CTAATGCACAGATCACCAGT+TGG | + | chr4_3:6055958-6055977 | Msa0626470:CDS | 45.0% | |
| AATCCAAACCTTCGACCAAC+TGG | - | chr4_3:6055976-6055995 | None:intergenic | 45.0% | |
| !!! | TCCCACTGATTTTCTGCTCT+TGG | - | chr4_3:6056284-6056303 | None:intergenic | 45.0% |
| ! | CTCATTTTCCTGAGACTCTC+CGG | + | chr4_3:6056406-6056425 | Msa0626470:intron | 45.0% |
| ! | TCATTTTCCTGAGACTCTCC+GGG | + | chr4_3:6056407-6056426 | Msa0626470:intron | 45.0% |
| GTTTGAGGAAAACGCAAACC+CGG | - | chr4_3:6056428-6056447 | None:intergenic | 45.0% | |
| GTGGAGAAACTTGATCGTAC+AGG | + | chr4_3:6056523-6056542 | Msa0626470:CDS | 45.0% | |
| ! | CTTCTCGTTCTGAACTTCTG+CGG | + | chr4_3:6056670-6056689 | Msa0626470:CDS | 45.0% |
| TTCGTCATGTGCCAAGTAAG+TGG | + | chr4_3:6056766-6056785 | Msa0626470:intron | 45.0% | |
| GACTAAGAACCGTCTCTTCA+TGG | + | chr4_3:6056960-6056979 | Msa0626470:CDS | 45.0% | |
| CCTTGGAAAGTTTGCCTCAA+CGG | + | chr4_3:6057118-6057137 | Msa0626470:CDS | 45.0% | |
| !! | CTCTCATAATTGGCCTTGTC+AGG | + | chr4_3:6057171-6057190 | Msa0626470:CDS | 45.0% |
| TTTGGCGAACTAACCTGACA+AGG | - | chr4_3:6057187-6057206 | None:intergenic | 45.0% | |
| !!! | GACAATGGTGTTTTGGGAAC+TGG | - | chr4_3:6057346-6057365 | None:intergenic | 45.0% |
| ! | CGTACGTGACAATGGTGTTT+TGG | - | chr4_3:6057353-6057372 | None:intergenic | 45.0% |
| AGCCAATTAGACGATTGAGG+AGG | + | chr4_3:6057380-6057399 | Msa0626470:CDS | 45.0% | |
| GACCTCCTCAATCGTCTAAT+TGG | - | chr4_3:6057385-6057404 | None:intergenic | 45.0% | |
| GGTCTTTCTATGGGCATCCA+AGG | + | chr4_3:6054754-6054773 | Msa0626470:CDS | 50.0% | |
| CGTTGACAGTAAGCTGGAAC+TGG | - | chr4_3:6055177-6055196 | None:intergenic | 50.0% | |
| CAGCAACGTTGACAGTAAGC+TGG | - | chr4_3:6055183-6055202 | None:intergenic | 50.0% | |
| ! | GACTCTGGTTGGTGCTTTGA+TGG | + | chr4_3:6055482-6055501 | Msa0626470:intron | 50.0% |
| AGTGTATCGCTAGAGTGGGT+TGG | + | chr4_3:6055527-6055546 | Msa0626470:intron | 50.0% | |
| ! | GTGTATCGCTAGAGTGGGTT+GGG | + | chr4_3:6055528-6055547 | Msa0626470:intron | 50.0% |
| ! | CTCTTGGGTGCAGCTTTTGT+GGG | + | chr4_3:6055873-6055892 | Msa0626470:intron | 50.0% |
| CCCCAAGTGTGTCCATGATA+AGG | - | chr4_3:6055903-6055922 | None:intergenic | 50.0% | |
| TGCATTAGGTGGTCTGTTGG+TGG | - | chr4_3:6055946-6055965 | None:intergenic | 50.0% | |
| CTGTGCATTAGGTGGTCTGT+TGG | - | chr4_3:6055949-6055968 | None:intergenic | 50.0% | |
| CTGGTGATCTGTGCATTAGG+TGG | - | chr4_3:6055957-6055976 | None:intergenic | 50.0% | |
| ACAGATCACCAGTTGGTCGA+AGG | + | chr4_3:6055965-6055984 | Msa0626470:CDS | 50.0% | |
| TCACCAGTTGGTCGAAGGTT+TGG | + | chr4_3:6055970-6055989 | Msa0626470:intron | 50.0% | |
| ACACACACACACACACACCA+AGG | - | chr4_3:6056131-6056150 | None:intergenic | 50.0% | |
| GACGGTTCTTAGTCACTCCT+CGG | - | chr4_3:6056954-6056973 | None:intergenic | 50.0% | |
| CCGTTGAGGCAAACTTTCCA+AGG | - | chr4_3:6057121-6057140 | None:intergenic | 50.0% | |
| GAAAGTTTGCCTCAACGGTG+AGG | + | chr4_3:6057123-6057142 | Msa0626470:CDS | 50.0% | |
| TGAGGCTTGACTGGAAGTTG+TGG | + | chr4_3:6057141-6057160 | Msa0626470:CDS | 50.0% | |
| CAAAAGCTGCACCCAAGAGC+AGG | - | chr4_3:6055872-6055891 | None:intergenic | 55.0% | |
| ! | GCTCTTGGGTGCAGCTTTTG+TGG | + | chr4_3:6055872-6055891 | Msa0626470:intron | 55.0% |
| !! | TGTTGGTGGTTCCGTAGCCA+GGG | - | chr4_3:6055932-6055951 | None:intergenic | 55.0% |
| ! | AGCTGGCCTCTTGCTATAGC+TGG | + | chr4_3:6057310-6057329 | Msa0626470:intron | 55.0% |
| GACACGTGCGCCGTTCTCTA+AGG | - | chr4_3:6054464-6054483 | None:intergenic | 60.0% | |
| CATATACAGAGCGGCCCCAG+CGG | - | chr4_3:6055135-6055154 | None:intergenic | 60.0% | |
| TGGTTCCGTAGCCAGGGCAA+GGG | - | chr4_3:6055926-6055945 | None:intergenic | 60.0% | |
| !! | CTGTTGGTGGTTCCGTAGCC+AGG | - | chr4_3:6055933-6055952 | None:intergenic | 60.0% |
| ACGCAAACCCGGAGAGTCTC+AGG | - | chr4_3:6056417-6056436 | None:intergenic | 60.0% | |
| CCAGTCAAGCCTCACCGTTG+AGG | - | chr4_3:6057135-6057154 | None:intergenic | 60.0% | |
| CCTCAACGGTGAGGCTTGAC+TGG | + | chr4_3:6057132-6057151 | Msa0626470:CDS | 60.0% | |
| GAGAACGGCGCACGTGTCGA+TGG | + | chr4_3:6054466-6054485 | Msa0626470:intron | 65.0% | |
| ! | AACGGCGCACGTGTCGATGG+AGG | + | chr4_3:6054469-6054488 | Msa0626470:intron | 65.0% |
| GTGGTTCCGTAGCCAGGGCA+AGG | - | chr4_3:6055927-6055946 | None:intergenic | 65.0% | |
| CACACTTGGGGCCCTTGCCC+TGG | + | chr4_3:6055912-6055931 | Msa0626470:CDS | 70.0% | |
| TGGGGCCCTTGCCCTGGCTA+CGG | + | chr4_3:6055918-6055937 | Msa0626470:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 6053974 | 6057420 | 6053974 | ID=Msa0626470;Name=Msa0626470 |
| chr4_3 | mRNA | 6053974 | 6057420 | 6053974 | ID=Msa0626470-mRNA-1;Parent=Msa0626470;Name=Msa0626470-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0|0|0.7|0.88|0.8|10|0|414 |
| chr4_3 | exon | 6053974 | 6054172 | 6053974 | ID=Msa0626470-mRNA-1:exon:1755;Parent=Msa0626470-mRNA-1 |
| chr4_3 | exon | 6054203 | 6054423 | 6054203 | ID=Msa0626470-mRNA-1:exon:1756;Parent=Msa0626470-mRNA-1 |
| chr4_3 | exon | 6054745 | 6054843 | 6054745 | ID=Msa0626470-mRNA-1:exon:1757;Parent=Msa0626470-mRNA-1 |
| chr4_3 | exon | 6055127 | 6055264 | 6055127 | ID=Msa0626470-mRNA-1:exon:1758;Parent=Msa0626470-mRNA-1 |
| chr4_3 | exon | 6055886 | 6055986 | 6055886 | ID=Msa0626470-mRNA-1:exon:1759;Parent=Msa0626470-mRNA-1 |
| chr4_3 | exon | 6056499 | 6056544 | 6056499 | ID=Msa0626470-mRNA-1:exon:1760;Parent=Msa0626470-mRNA-1 |
| chr4_3 | exon | 6056649 | 6056780 | 6056649 | ID=Msa0626470-mRNA-1:exon:1761;Parent=Msa0626470-mRNA-1 |
| chr4_3 | exon | 6056904 | 6057011 | 6056904 | ID=Msa0626470-mRNA-1:exon:1762;Parent=Msa0626470-mRNA-1 |
| chr4_3 | exon | 6057101 | 6057192 | 6057101 | ID=Msa0626470-mRNA-1:exon:1763;Parent=Msa0626470-mRNA-1 |
| chr4_3 | exon | 6057312 | 6057420 | 6057312 | ID=Msa0626470-mRNA-1:exon:1764;Parent=Msa0626470-mRNA-1 |
| chr4_3 | CDS | 6053974 | 6054172 | 6053974 | ID=Msa0626470-mRNA-1:cds;Parent=Msa0626470-mRNA-1 |
| chr4_3 | CDS | 6054203 | 6054423 | 6054203 | ID=Msa0626470-mRNA-1:cds;Parent=Msa0626470-mRNA-1 |
| chr4_3 | CDS | 6054745 | 6054843 | 6054745 | ID=Msa0626470-mRNA-1:cds;Parent=Msa0626470-mRNA-1 |
| chr4_3 | CDS | 6055127 | 6055264 | 6055127 | ID=Msa0626470-mRNA-1:cds;Parent=Msa0626470-mRNA-1 |
| chr4_3 | CDS | 6055886 | 6055986 | 6055886 | ID=Msa0626470-mRNA-1:cds;Parent=Msa0626470-mRNA-1 |
| chr4_3 | CDS | 6056499 | 6056544 | 6056499 | ID=Msa0626470-mRNA-1:cds;Parent=Msa0626470-mRNA-1 |
| chr4_3 | CDS | 6056649 | 6056780 | 6056649 | ID=Msa0626470-mRNA-1:cds;Parent=Msa0626470-mRNA-1 |
| chr4_3 | CDS | 6056904 | 6057011 | 6056904 | ID=Msa0626470-mRNA-1:cds;Parent=Msa0626470-mRNA-1 |
| chr4_3 | CDS | 6057101 | 6057192 | 6057101 | ID=Msa0626470-mRNA-1:cds;Parent=Msa0626470-mRNA-1 |
| chr4_3 | CDS | 6057312 | 6057420 | 6057312 | ID=Msa0626470-mRNA-1:cds;Parent=Msa0626470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
