AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1113210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1113210 MtrunA17_Chr7g0249071 69.231 169 8 2 1 163 1 131 1.84e-63 191
Msa1113210 MtrunA17_Chr4g0047431 43.636 110 49 2 65 161 277 386 4.51e-22 91.7
Msa1113210 MtrunA17_Chr4g0047431 39.604 101 49 1 68 156 151 251 3.78e-20 86.3
Msa1113210 MtrunA17_Chr4g0047431 43.269 104 53 2 52 154 388 486 2.92e-19 83.6
Msa1113210 MtrunA17_Chr4g0006981 37.984 129 64 3 46 159 186 313 1.02e-21 89.0
Msa1113210 MtrunA17_Chr2g0332591 42.029 69 40 0 87 155 81 149 2.13e-17 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1113210 AT3G54900.1 59.589 146 42 3 32 163 31 173 2.37e-53 167
Msa1113210 AT2G38270.1 39.062 128 62 3 45 157 166 292 6.34e-23 92.4
Msa1113210 AT4G04950.1 41.053 95 44 1 73 155 153 247 1.15e-20 87.8
Msa1113210 AT4G04950.1 40.351 114 60 2 41 154 378 483 2.81e-20 87.0
Msa1113210 AT4G04950.1 39.091 110 54 2 67 163 277 386 1.31e-18 82.0
Msa1113210 AT3G15660.2 44.928 69 38 0 87 155 91 159 1.09e-18 78.6
Msa1113210 AT3G15660.1 44.928 69 38 0 87 155 91 159 1.09e-18 78.6

Find 49 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGTTGTTTGAGTTGAATTT+TGG 0.141392 7_3:-59412267 None:intergenic
TCCAATGTGGTCTTCAATTC+AGG 0.241214 7_3:-59412558 None:intergenic
ATACTACATTGCAATTATTC+TGG 0.297963 7_3:+59414185 Msa1113210:three_prime_UTR
ATACAATGGCTTTGGGATAA+TGG 0.300048 7_3:+59414102 Msa1113210:three_prime_UTR
ACTAAGTTATACAATGGCTT+TGG 0.331381 7_3:+59414094 Msa1113210:three_prime_UTR
TTTCCTCAGCTCTATATTGA+TGG 0.331430 7_3:+59412763 Msa1113210:CDS
TCCACCACAATTCGCTGTTC+TGG 0.367215 7_3:+59412293 Msa1113210:CDS
TAAACAGACCTTGCATTTGT+AGG 0.380551 7_3:-59414362 None:intergenic
CTAAGTTATACAATGGCTTT+GGG 0.389442 7_3:+59414095 Msa1113210:three_prime_UTR
CTGAGGAAAGGTAGGCCAAC+TGG 0.420603 7_3:-59412749 None:intergenic
ATATAAGAATGGAGAATTGC+AGG 0.421470 7_3:+59414013 Msa1113210:CDS
TCATGAGCAAATGAGGCTTC+AGG 0.426017 7_3:-59414060 None:intergenic
CTCTTTCCAAGTGTTACTGT+TGG 0.447737 7_3:-59412043 None:intergenic
TGAATACATATCTCATTGAA+TGG 0.453468 7_3:+59414212 Msa1113210:three_prime_UTR
CCAGTGTGGATTCTCAAATA+CGG 0.456407 7_3:+59412636 Msa1113210:intron
AAGAGTACTTGCAAAGAGAA+TGG 0.475425 7_3:-59412137 None:intergenic
TGGAATATTCCTTCAGTCCC+TGG 0.492321 7_3:-59412729 None:intergenic
ATGCAAGGTCTGTTTACAAC+AGG 0.493520 7_3:+59414369 Msa1113210:three_prime_UTR
TGTAGTAGTTATCGCGATCA+TGG 0.513037 7_3:-59414304 None:intergenic
ATAATCATAATAGACATTTG+TGG 0.521514 7_3:-59414148 None:intergenic
GGACAATGATATGTTACGCC+AGG 0.536196 7_3:+59412711 Msa1113210:CDS
TGGAGAATTGCAGGAACTAG+TGG 0.537216 7_3:+59414022 Msa1113210:CDS
ATTATGCTCATGAGCAAATG+AGG 0.554654 7_3:-59414067 None:intergenic
GGAGGATGTGATATCACTGT+TGG 0.558875 7_3:+59412796 Msa1113210:CDS
GCTGCAGAGGCATATAAGAA+TGG 0.563746 7_3:+59414002 Msa1113210:intron
ATCAGTCTCCTACAAATGCA+AGG 0.575601 7_3:+59414354 Msa1113210:three_prime_UTR
ACAGTGACGAGGTTGTTACA+TGG 0.576288 7_3:-59412187 None:intergenic
ATTGCAGGAACTAGTGGAGA+AGG 0.576931 7_3:+59414028 Msa1113210:CDS
ATAAAACCAACAGTAACACT+TGG 0.577976 7_3:+59412037 Msa1113210:five_prime_UTR
TATGTTACGCCAGGGACTGA+AGG 0.591574 7_3:+59412720 Msa1113210:CDS
GACAATTATAGTGCTAGTTG+CGG 0.597340 7_3:+59414234 Msa1113210:three_prime_UTR
ACCAGAACAGCGAATTGTGG+TGG 0.597995 7_3:-59412294 None:intergenic
GACTGAAGGAATATTCCAGT+TGG 0.605067 7_3:+59412734 Msa1113210:CDS
ATATAGAGCTGAGGAAAGGT+AGG 0.606983 7_3:-59412757 None:intergenic
CTTGGAAAGAGAATTGCGAC+TGG 0.611526 7_3:+59412055 Msa1113210:five_prime_UTR
ATCAATATAGAGCTGAGGAA+AGG 0.620513 7_3:-59412761 None:intergenic
ATCATCACTAAGTTATACAA+TGG 0.627423 7_3:+59414088 Msa1113210:three_prime_UTR
CAGTGACGAGGTTGTTACAT+GGG 0.629425 7_3:-59412186 None:intergenic
GACAATGATATGTTACGCCA+GGG 0.633098 7_3:+59412712 Msa1113210:CDS
TCCTGAATTGAAGACCACAT+TGG 0.633554 7_3:+59412557 Msa1113210:CDS
TCTCCATCAATATAGAGCTG+AGG 0.637233 7_3:-59412766 None:intergenic
ACATGGGAGTTGAAGCATGA+TGG 0.638429 7_3:-59412170 None:intergenic
TGTAACAACTTTATCCAATG+TGG 0.642987 7_3:-59412571 None:intergenic
CGATCATGGCAGTTTAACAA+AGG 0.648000 7_3:-59414290 None:intergenic
GAGTTGAAGCATGATGGTGT+TGG 0.651051 7_3:-59412164 None:intergenic
AGTACCAGAACAGCGAATTG+TGG 0.667307 7_3:-59412297 None:intergenic
AGAACAAGAGATGAACGAGG+TGG 0.681161 7_3:-59412215 None:intergenic
AGGTGGAAGAGACAGTGACG+AGG 0.722890 7_3:-59412198 None:intergenic
TTAAGAACAAGAGATGAACG+AGG 0.769392 7_3:-59412218 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTATAGTTTTTCT+AGG - chr7_3:59413200-59413219 None:intergenic 10.0%
!!! TTAAGTTTATTTTTTAACAT+CGG + chr7_3:59413909-59413928 Msa1113210:intron 10.0%
!!! TTTTTATTTATAGTTTTTCT+AGG - chr7_3:59413200-59413219 None:intergenic 10.0%
!!! TTAAGTTTATTTTTTAACAT+CGG + chr7_3:59413909-59413928 Msa1113210:intron 10.0%
!!! AAAATAGTTTTGTTTATGAA+GGG + chr7_3:59412600-59412619 Msa1113210:intron 15.0%
!! TAAATCTTCAAAAAATTAGA+AGG - chr7_3:59413540-59413559 None:intergenic 15.0%
!! AATTAAAACCTAAAAAGAAA+TGG + chr7_3:59413569-59413588 Msa1113210:intron 15.0%
!!! ATTTTTTTTTCCAACTTTTA+TGG - chr7_3:59413816-59413835 None:intergenic 15.0%
!!! AAAATAGTTTTGTTTATGAA+GGG + chr7_3:59412600-59412619 Msa1113210:intron 15.0%
!! TAAATCTTCAAAAAATTAGA+AGG - chr7_3:59413540-59413559 None:intergenic 15.0%
!! AATTAAAACCTAAAAAGAAA+TGG + chr7_3:59413569-59413588 Msa1113210:intron 15.0%
!!! ATTTTTTTTTCCAACTTTTA+TGG - chr7_3:59413816-59413835 None:intergenic 15.0%
!! ATATAATCTTATATGCAACT+TGG + chr7_3:59412500-59412519 Msa1113210:intron 20.0%
!! TATAATCTTATATGCAACTT+GGG + chr7_3:59412501-59412520 Msa1113210:intron 20.0%
!!! CAAAATAGTTTTGTTTATGA+AGG + chr7_3:59412599-59412618 Msa1113210:intron 20.0%
!!! TTTTGAAACGATAAACATAT+TGG + chr7_3:59412690-59412709 Msa1113210:CDS 20.0%
!! TAGTTATCATGTTAAACTAA+TGG + chr7_3:59413480-59413499 Msa1113210:intron 20.0%
!! TAATGGAGATATTATACTAT+AGG + chr7_3:59413497-59413516 Msa1113210:intron 20.0%
!!! AAATTAGAAGGAAAGTATAT+AGG - chr7_3:59413528-59413547 None:intergenic 20.0%
!!! AAAAAAAAATGCTTTTGAGT+AGG + chr7_3:59413826-59413845 Msa1113210:intron 20.0%
!! ATAATCATAATAGACATTTG+TGG - chr7_3:59414151-59414170 None:intergenic 20.0%
!! ATATAATCTTATATGCAACT+TGG + chr7_3:59412500-59412519 Msa1113210:intron 20.0%
!! TATAATCTTATATGCAACTT+GGG + chr7_3:59412501-59412520 Msa1113210:intron 20.0%
!!! CAAAATAGTTTTGTTTATGA+AGG + chr7_3:59412599-59412618 Msa1113210:intron 20.0%
!!! TTTTGAAACGATAAACATAT+TGG + chr7_3:59412690-59412709 Msa1113210:CDS 20.0%
!! TAGTTATCATGTTAAACTAA+TGG + chr7_3:59413480-59413499 Msa1113210:intron 20.0%
!! TAATGGAGATATTATACTAT+AGG + chr7_3:59413497-59413516 Msa1113210:intron 20.0%
!!! AAATTAGAAGGAAAGTATAT+AGG - chr7_3:59413528-59413547 None:intergenic 20.0%
!!! AAAAAAAAATGCTTTTGAGT+AGG + chr7_3:59413826-59413845 Msa1113210:intron 20.0%
!! ATAATCATAATAGACATTTG+TGG - chr7_3:59414151-59414170 None:intergenic 20.0%
! TGAATTGTGCAAAAATTGAA+GGG - chr7_3:59412402-59412421 None:intergenic 25.0%
! AAATAGACTTAACCCTAAAA+GGG - chr7_3:59412432-59412451 None:intergenic 25.0%
! AAAATAGACTTAACCCTAAA+AGG - chr7_3:59412433-59412452 None:intergenic 25.0%
!!! TATATTGATGGAGAGTTTTT+TGG + chr7_3:59412775-59412794 Msa1113210:CDS 25.0%
! ATGAAAATCAGAAATTCAAG+AGG - chr7_3:59412827-59412846 None:intergenic 25.0%
! TTATGTTAACATTATCACCA+AGG - chr7_3:59412900-59412919 None:intergenic 25.0%
!!! CACTTAGTTTATTTTCATGT+TGG - chr7_3:59412957-59412976 None:intergenic 25.0%
! TGATGAGTTCGATATAAATA+TGG + chr7_3:59413245-59413264 Msa1113210:intron 25.0%
!!! GTTGTTGTTGTTGTTTAATT+TGG + chr7_3:59413334-59413353 Msa1113210:intron 25.0%
! AGCTATGGATAATTAGTAAT+AGG + chr7_3:59413387-59413406 Msa1113210:intron 25.0%
!! TCATATTTTACATTTGAGCT+AGG + chr7_3:59413427-59413446 Msa1113210:intron 25.0%
!! AACTCTTTCCATTTCTTTTT+AGG - chr7_3:59413580-59413599 None:intergenic 25.0%
! AAAAGATTAATATGTGCAAC+TGG - chr7_3:59413754-59413773 None:intergenic 25.0%
!! ACTTTTATGGATCAATTACA+AGG - chr7_3:59413803-59413822 None:intergenic 25.0%
! TGTAATTGATCCATAAAAGT+TGG + chr7_3:59413803-59413822 Msa1113210:intron 25.0%
!! TTCTAATCTCACTTTGTTTA+TGG + chr7_3:59413980-59413999 Msa1113210:intron 25.0%
! ATCATCACTAAGTTATACAA+TGG + chr7_3:59414088-59414107 Msa1113210:three_prime_UTR 25.0%
! ATACTACATTGCAATTATTC+TGG + chr7_3:59414185-59414204 Msa1113210:three_prime_UTR 25.0%
! TGAATACATATCTCATTGAA+TGG + chr7_3:59414212-59414231 Msa1113210:three_prime_UTR 25.0%
!! TTTTATCAAATCATGGATGA+GGG - chr7_3:59412023-59412042 None:intergenic 25.0%
! TGAATTGTGCAAAAATTGAA+GGG - chr7_3:59412402-59412421 None:intergenic 25.0%
! AAATAGACTTAACCCTAAAA+GGG - chr7_3:59412432-59412451 None:intergenic 25.0%
! AAAATAGACTTAACCCTAAA+AGG - chr7_3:59412433-59412452 None:intergenic 25.0%
!!! TATATTGATGGAGAGTTTTT+TGG + chr7_3:59412775-59412794 Msa1113210:CDS 25.0%
! ATGAAAATCAGAAATTCAAG+AGG - chr7_3:59412827-59412846 None:intergenic 25.0%
! TTATGTTAACATTATCACCA+AGG - chr7_3:59412900-59412919 None:intergenic 25.0%
!!! CACTTAGTTTATTTTCATGT+TGG - chr7_3:59412957-59412976 None:intergenic 25.0%
! TGATGAGTTCGATATAAATA+TGG + chr7_3:59413245-59413264 Msa1113210:intron 25.0%
!!! GTTGTTGTTGTTGTTTAATT+TGG + chr7_3:59413334-59413353 Msa1113210:intron 25.0%
! AGCTATGGATAATTAGTAAT+AGG + chr7_3:59413387-59413406 Msa1113210:intron 25.0%
!! TCATATTTTACATTTGAGCT+AGG + chr7_3:59413427-59413446 Msa1113210:intron 25.0%
!! AACTCTTTCCATTTCTTTTT+AGG - chr7_3:59413580-59413599 None:intergenic 25.0%
! AAAAGATTAATATGTGCAAC+TGG - chr7_3:59413754-59413773 None:intergenic 25.0%
!! ACTTTTATGGATCAATTACA+AGG - chr7_3:59413803-59413822 None:intergenic 25.0%
! TGTAATTGATCCATAAAAGT+TGG + chr7_3:59413803-59413822 Msa1113210:intron 25.0%
!! TTCTAATCTCACTTTGTTTA+TGG + chr7_3:59413980-59413999 Msa1113210:intron 25.0%
! ATCATCACTAAGTTATACAA+TGG + chr7_3:59414088-59414107 Msa1113210:three_prime_UTR 25.0%
! ATACTACATTGCAATTATTC+TGG + chr7_3:59414185-59414204 Msa1113210:three_prime_UTR 25.0%
! TGAATACATATCTCATTGAA+TGG + chr7_3:59414212-59414231 Msa1113210:three_prime_UTR 25.0%
! GTTTTATCAAATCATGGATG+AGG - chr7_3:59412024-59412043 None:intergenic 30.0%
!!! CTGTTGGTTTTATCAAATCA+TGG - chr7_3:59412030-59412049 None:intergenic 30.0%
ATAAAACCAACAGTAACACT+TGG + chr7_3:59412037-59412056 Msa1113210:five_prime_UTR 30.0%
!!! TTTGAGTTGAATTTTGGGTT+GGG - chr7_3:59412264-59412283 None:intergenic 30.0%
!!! CGTTGTTTGAGTTGAATTTT+GGG - chr7_3:59412269-59412288 None:intergenic 30.0%
!!! ACGTTGTTTGAGTTGAATTT+TGG - chr7_3:59412270-59412289 None:intergenic 30.0%
TTGAAGGGTGAAATTGAAAT+GGG - chr7_3:59412387-59412406 None:intergenic 30.0%
ATTGAAGGGTGAAATTGAAA+TGG - chr7_3:59412388-59412407 None:intergenic 30.0%
GTGAATTGTGCAAAAATTGA+AGG - chr7_3:59412403-59412422 None:intergenic 30.0%
! AATTCACAAAAACCCCTTTT+AGG + chr7_3:59412416-59412435 Msa1113210:intron 30.0%
! ATTCACAAAAACCCCTTTTA+GGG + chr7_3:59412417-59412436 Msa1113210:intron 30.0%
AATAGACTTAACCCTAAAAG+GGG - chr7_3:59412431-59412450 None:intergenic 30.0%
!!! ACTTGGGTTTTTTCTGATTT+TGG + chr7_3:59412517-59412536 Msa1113210:intron 30.0%
TGTAACAACTTTATCCAATG+TGG - chr7_3:59412574-59412593 None:intergenic 30.0%
!! TTTGTTTATGAAGGGTACTA+AGG + chr7_3:59412608-59412627 Msa1113210:intron 30.0%
ATCCTTACTACATAATCTAG+AGG - chr7_3:59413131-59413150 None:intergenic 30.0%
AATACAAAAGTTGACCAGAT+TGG + chr7_3:59413633-59413652 Msa1113210:intron 30.0%
! ACTTGCATTTAAAACCAATC+TGG - chr7_3:59413650-59413669 None:intergenic 30.0%
AACACGATAGAATATTTGTC+AGG - chr7_3:59413675-59413694 None:intergenic 30.0%
TGACAAATATTCTATCGTGT+TGG + chr7_3:59413674-59413693 Msa1113210:intron 30.0%
ATATAAGAATGGAGAATTGC+AGG + chr7_3:59414013-59414032 Msa1113210:CDS 30.0%
ACTAAGTTATACAATGGCTT+TGG + chr7_3:59414094-59414113 Msa1113210:three_prime_UTR 30.0%
CTAAGTTATACAATGGCTTT+GGG + chr7_3:59414095-59414114 Msa1113210:three_prime_UTR 30.0%
TTTATCAAATCATGGATGAG+GGG - chr7_3:59412022-59412041 None:intergenic 30.0%
! GTTTTATCAAATCATGGATG+AGG - chr7_3:59412024-59412043 None:intergenic 30.0%
!!! CTGTTGGTTTTATCAAATCA+TGG - chr7_3:59412030-59412049 None:intergenic 30.0%
ATAAAACCAACAGTAACACT+TGG + chr7_3:59412037-59412056 Msa1113210:five_prime_UTR 30.0%
!!! TTTGAGTTGAATTTTGGGTT+GGG - chr7_3:59412264-59412283 None:intergenic 30.0%
!!! CGTTGTTTGAGTTGAATTTT+GGG - chr7_3:59412269-59412288 None:intergenic 30.0%
!!! ACGTTGTTTGAGTTGAATTT+TGG - chr7_3:59412270-59412289 None:intergenic 30.0%
TTGAAGGGTGAAATTGAAAT+GGG - chr7_3:59412387-59412406 None:intergenic 30.0%
ATTGAAGGGTGAAATTGAAA+TGG - chr7_3:59412388-59412407 None:intergenic 30.0%
GTGAATTGTGCAAAAATTGA+AGG - chr7_3:59412403-59412422 None:intergenic 30.0%
! AATTCACAAAAACCCCTTTT+AGG + chr7_3:59412416-59412435 Msa1113210:intron 30.0%
! ATTCACAAAAACCCCTTTTA+GGG + chr7_3:59412417-59412436 Msa1113210:intron 30.0%
AATAGACTTAACCCTAAAAG+GGG - chr7_3:59412431-59412450 None:intergenic 30.0%
!!! ACTTGGGTTTTTTCTGATTT+TGG + chr7_3:59412517-59412536 Msa1113210:intron 30.0%
TGTAACAACTTTATCCAATG+TGG - chr7_3:59412574-59412593 None:intergenic 30.0%
!! TTTGTTTATGAAGGGTACTA+AGG + chr7_3:59412608-59412627 Msa1113210:intron 30.0%
ATCCTTACTACATAATCTAG+AGG - chr7_3:59413131-59413150 None:intergenic 30.0%
AATACAAAAGTTGACCAGAT+TGG + chr7_3:59413633-59413652 Msa1113210:intron 30.0%
! ACTTGCATTTAAAACCAATC+TGG - chr7_3:59413650-59413669 None:intergenic 30.0%
AACACGATAGAATATTTGTC+AGG - chr7_3:59413675-59413694 None:intergenic 30.0%
TGACAAATATTCTATCGTGT+TGG + chr7_3:59413674-59413693 Msa1113210:intron 30.0%
ATATAAGAATGGAGAATTGC+AGG + chr7_3:59414013-59414032 Msa1113210:CDS 30.0%
ACTAAGTTATACAATGGCTT+TGG + chr7_3:59414094-59414113 Msa1113210:three_prime_UTR 30.0%
CTAAGTTATACAATGGCTTT+GGG + chr7_3:59414095-59414114 Msa1113210:three_prime_UTR 30.0%
!! AAGAGTACTTGCAAAGAGAA+TGG - chr7_3:59412140-59412159 None:intergenic 35.0%
TTAAGAACAAGAGATGAACG+AGG - chr7_3:59412221-59412240 None:intergenic 35.0%
!!! GTTTGAGTTGAATTTTGGGT+TGG - chr7_3:59412265-59412284 None:intergenic 35.0%
AATTAAGTGAAAACCCACGA+AGG - chr7_3:59412338-59412357 None:intergenic 35.0%
TGAAGGGTGAAATTGAAATG+GGG - chr7_3:59412386-59412405 None:intergenic 35.0%
! ATACGGTTGTGCAAATTTTG+AGG + chr7_3:59412653-59412672 Msa1113210:CDS 35.0%
ATCAATATAGAGCTGAGGAA+AGG - chr7_3:59412764-59412783 None:intergenic 35.0%
TTTCCTCAGCTCTATATTGA+TGG + chr7_3:59412763-59412782 Msa1113210:CDS 35.0%
!!! ATTGATGGAGAGTTTTTTGG+AGG + chr7_3:59412778-59412797 Msa1113210:CDS 35.0%
TGTCTGTGTGGTACAATATT+TGG + chr7_3:59412856-59412875 Msa1113210:intron 35.0%
! CAAGGCAACATTGATTGATT+AGG - chr7_3:59412882-59412901 None:intergenic 35.0%
CTAATCAATCAATGTTGCCT+TGG + chr7_3:59412880-59412899 Msa1113210:intron 35.0%
TGTTGTATGAGACATAGTCT+TGG + chr7_3:59412920-59412939 Msa1113210:intron 35.0%
AACTAAGTGTAGCAGATATG+TGG + chr7_3:59412968-59412987 Msa1113210:intron 35.0%
GATGTGTGGTAAGATTAGAT+GGG + chr7_3:59413002-59413021 Msa1113210:intron 35.0%
ACCTATAGTACAAAAGTTGC+TGG + chr7_3:59413067-59413086 Msa1113210:intron 35.0%
! TCCAGCAACTTTTGTACTAT+AGG - chr7_3:59413071-59413090 None:intergenic 35.0%
TACAAAAGTTGCTGGAAACT+AGG + chr7_3:59413075-59413094 Msa1113210:intron 35.0%
GACCTCTAGATTATGTAGTA+AGG + chr7_3:59413126-59413145 Msa1113210:intron 35.0%
AGTAAGGATAGTAGATCAGA+TGG + chr7_3:59413142-59413161 Msa1113210:intron 35.0%
AGTAAACATATGAAAGCTGG+AGG - chr7_3:59413853-59413872 None:intergenic 35.0%
TGCAGTAAACATATGAAAGC+TGG - chr7_3:59413856-59413875 None:intergenic 35.0%
ATTATGCTCATGAGCAAATG+AGG - chr7_3:59414070-59414089 None:intergenic 35.0%
!! ATACAATGGCTTTGGGATAA+TGG + chr7_3:59414102-59414121 Msa1113210:three_prime_UTR 35.0%
GACAATTATAGTGCTAGTTG+CGG + chr7_3:59414234-59414253 Msa1113210:three_prime_UTR 35.0%
TAAACAGACCTTGCATTTGT+AGG - chr7_3:59414365-59414384 None:intergenic 35.0%
TTATCAAATCATGGATGAGG+GGG - chr7_3:59412021-59412040 None:intergenic 35.0%
!! AAGAGTACTTGCAAAGAGAA+TGG - chr7_3:59412140-59412159 None:intergenic 35.0%
TTAAGAACAAGAGATGAACG+AGG - chr7_3:59412221-59412240 None:intergenic 35.0%
!!! GTTTGAGTTGAATTTTGGGT+TGG - chr7_3:59412265-59412284 None:intergenic 35.0%
AATTAAGTGAAAACCCACGA+AGG - chr7_3:59412338-59412357 None:intergenic 35.0%
TGAAGGGTGAAATTGAAATG+GGG - chr7_3:59412386-59412405 None:intergenic 35.0%
! ATACGGTTGTGCAAATTTTG+AGG + chr7_3:59412653-59412672 Msa1113210:CDS 35.0%
ATCAATATAGAGCTGAGGAA+AGG - chr7_3:59412764-59412783 None:intergenic 35.0%
TTTCCTCAGCTCTATATTGA+TGG + chr7_3:59412763-59412782 Msa1113210:CDS 35.0%
!!! ATTGATGGAGAGTTTTTTGG+AGG + chr7_3:59412778-59412797 Msa1113210:CDS 35.0%
TGTCTGTGTGGTACAATATT+TGG + chr7_3:59412856-59412875 Msa1113210:intron 35.0%
! CAAGGCAACATTGATTGATT+AGG - chr7_3:59412882-59412901 None:intergenic 35.0%
CTAATCAATCAATGTTGCCT+TGG + chr7_3:59412880-59412899 Msa1113210:intron 35.0%
TGTTGTATGAGACATAGTCT+TGG + chr7_3:59412920-59412939 Msa1113210:intron 35.0%
AACTAAGTGTAGCAGATATG+TGG + chr7_3:59412968-59412987 Msa1113210:intron 35.0%
GATGTGTGGTAAGATTAGAT+GGG + chr7_3:59413002-59413021 Msa1113210:intron 35.0%
ACCTATAGTACAAAAGTTGC+TGG + chr7_3:59413067-59413086 Msa1113210:intron 35.0%
! TCCAGCAACTTTTGTACTAT+AGG - chr7_3:59413071-59413090 None:intergenic 35.0%
TACAAAAGTTGCTGGAAACT+AGG + chr7_3:59413075-59413094 Msa1113210:intron 35.0%
GACCTCTAGATTATGTAGTA+AGG + chr7_3:59413126-59413145 Msa1113210:intron 35.0%
AGTAAGGATAGTAGATCAGA+TGG + chr7_3:59413142-59413161 Msa1113210:intron 35.0%
AGTAAACATATGAAAGCTGG+AGG - chr7_3:59413853-59413872 None:intergenic 35.0%
TGCAGTAAACATATGAAAGC+TGG - chr7_3:59413856-59413875 None:intergenic 35.0%
ATTATGCTCATGAGCAAATG+AGG - chr7_3:59414070-59414089 None:intergenic 35.0%
!! ATACAATGGCTTTGGGATAA+TGG + chr7_3:59414102-59414121 Msa1113210:three_prime_UTR 35.0%
GACAATTATAGTGCTAGTTG+CGG + chr7_3:59414234-59414253 Msa1113210:three_prime_UTR 35.0%
TAAACAGACCTTGCATTTGT+AGG - chr7_3:59414365-59414384 None:intergenic 35.0%
! CTCTTTCCAAGTGTTACTGT+TGG - chr7_3:59412046-59412065 None:intergenic 40.0%
!!! GTTGAATTTTGGGTTGGGAA+TGG - chr7_3:59412259-59412278 None:intergenic 40.0%
AAAACCCACGAAGGAAAAGA+GGG - chr7_3:59412329-59412348 None:intergenic 40.0%
GAAGGGTGAAATTGAAATGG+GGG - chr7_3:59412385-59412404 None:intergenic 40.0%
TCCTGAATTGAAGACCACAT+TGG + chr7_3:59412557-59412576 Msa1113210:CDS 40.0%
TCCAATGTGGTCTTCAATTC+AGG - chr7_3:59412561-59412580 None:intergenic 40.0%
! GTACTAAGGATTTTCCAGTG+TGG + chr7_3:59412622-59412641 Msa1113210:intron 40.0%
CCAGTGTGGATTCTCAAATA+CGG + chr7_3:59412636-59412655 Msa1113210:intron 40.0%
GACAATGATATGTTACGCCA+GGG + chr7_3:59412712-59412731 Msa1113210:CDS 40.0%
GACTGAAGGAATATTCCAGT+TGG + chr7_3:59412734-59412753 Msa1113210:CDS 40.0%
ATATAGAGCTGAGGAAAGGT+AGG - chr7_3:59412760-59412779 None:intergenic 40.0%
TCTCCATCAATATAGAGCTG+AGG - chr7_3:59412769-59412788 None:intergenic 40.0%
!! CATACTTGTTTCTGTCTGTG+TGG + chr7_3:59412844-59412863 Msa1113210:intron 40.0%
GGATGTGTGGTAAGATTAGA+TGG + chr7_3:59413001-59413020 Msa1113210:intron 40.0%
ATTCGAGAGAGAGAGAGTTA+GGG + chr7_3:59413040-59413059 Msa1113210:intron 40.0%
AAACTAGGCTTAGGTGGTTT+GGG + chr7_3:59413090-59413109 Msa1113210:intron 40.0%
! TAAGCCTTATCCCACTAAGT+GGG - chr7_3:59413314-59413333 None:intergenic 40.0%
!! AATTTGGTTTGCTTCCCTGA+TGG + chr7_3:59413350-59413369 Msa1113210:intron 40.0%
CATGCTCAAAGATTCCATCA+GGG - chr7_3:59413367-59413386 None:intergenic 40.0%
TCATGCTCAAAGATTCCATC+AGG - chr7_3:59413368-59413387 None:intergenic 40.0%
GAATCTTTGAGCATGAGCTA+TGG + chr7_3:59413372-59413391 Msa1113210:intron 40.0%
GGATCAATTACAAGGAAGCA+AGG - chr7_3:59413795-59413814 None:intergenic 40.0%
CGATCATGGCAGTTTAACAA+AGG - chr7_3:59414293-59414312 None:intergenic 40.0%
TGTAGTAGTTATCGCGATCA+TGG - chr7_3:59414307-59414326 None:intergenic 40.0%
ATCAGTCTCCTACAAATGCA+AGG + chr7_3:59414354-59414373 Msa1113210:three_prime_UTR 40.0%
ATGCAAGGTCTGTTTACAAC+AGG + chr7_3:59414369-59414388 Msa1113210:three_prime_UTR 40.0%
! CTCTTTCCAAGTGTTACTGT+TGG - chr7_3:59412046-59412065 None:intergenic 40.0%
!!! GTTGAATTTTGGGTTGGGAA+TGG - chr7_3:59412259-59412278 None:intergenic 40.0%
AAAACCCACGAAGGAAAAGA+GGG - chr7_3:59412329-59412348 None:intergenic 40.0%
GAAGGGTGAAATTGAAATGG+GGG - chr7_3:59412385-59412404 None:intergenic 40.0%
TCCTGAATTGAAGACCACAT+TGG + chr7_3:59412557-59412576 Msa1113210:CDS 40.0%
TCCAATGTGGTCTTCAATTC+AGG - chr7_3:59412561-59412580 None:intergenic 40.0%
! GTACTAAGGATTTTCCAGTG+TGG + chr7_3:59412622-59412641 Msa1113210:intron 40.0%
CCAGTGTGGATTCTCAAATA+CGG + chr7_3:59412636-59412655 Msa1113210:intron 40.0%
GACAATGATATGTTACGCCA+GGG + chr7_3:59412712-59412731 Msa1113210:CDS 40.0%
GACTGAAGGAATATTCCAGT+TGG + chr7_3:59412734-59412753 Msa1113210:CDS 40.0%
ATATAGAGCTGAGGAAAGGT+AGG - chr7_3:59412760-59412779 None:intergenic 40.0%
TCTCCATCAATATAGAGCTG+AGG - chr7_3:59412769-59412788 None:intergenic 40.0%
!! CATACTTGTTTCTGTCTGTG+TGG + chr7_3:59412844-59412863 Msa1113210:intron 40.0%
GGATGTGTGGTAAGATTAGA+TGG + chr7_3:59413001-59413020 Msa1113210:intron 40.0%
ATTCGAGAGAGAGAGAGTTA+GGG + chr7_3:59413040-59413059 Msa1113210:intron 40.0%
AAACTAGGCTTAGGTGGTTT+GGG + chr7_3:59413090-59413109 Msa1113210:intron 40.0%
! TAAGCCTTATCCCACTAAGT+GGG - chr7_3:59413314-59413333 None:intergenic 40.0%
!! AATTTGGTTTGCTTCCCTGA+TGG + chr7_3:59413350-59413369 Msa1113210:intron 40.0%
CATGCTCAAAGATTCCATCA+GGG - chr7_3:59413367-59413386 None:intergenic 40.0%
TCATGCTCAAAGATTCCATC+AGG - chr7_3:59413368-59413387 None:intergenic 40.0%
GAATCTTTGAGCATGAGCTA+TGG + chr7_3:59413372-59413391 Msa1113210:intron 40.0%
GGATCAATTACAAGGAAGCA+AGG - chr7_3:59413795-59413814 None:intergenic 40.0%
CGATCATGGCAGTTTAACAA+AGG - chr7_3:59414293-59414312 None:intergenic 40.0%
TGTAGTAGTTATCGCGATCA+TGG - chr7_3:59414307-59414326 None:intergenic 40.0%
ATCAGTCTCCTACAAATGCA+AGG + chr7_3:59414354-59414373 Msa1113210:three_prime_UTR 40.0%
ATGCAAGGTCTGTTTACAAC+AGG + chr7_3:59414369-59414388 Msa1113210:three_prime_UTR 40.0%
CTTGGAAAGAGAATTGCGAC+TGG + chr7_3:59412055-59412074 Msa1113210:five_prime_UTR 45.0%
! GAGTTGAAGCATGATGGTGT+TGG - chr7_3:59412167-59412186 None:intergenic 45.0%
ACATGGGAGTTGAAGCATGA+TGG - chr7_3:59412173-59412192 None:intergenic 45.0%
CAGTGACGAGGTTGTTACAT+GGG - chr7_3:59412189-59412208 None:intergenic 45.0%
ACAGTGACGAGGTTGTTACA+TGG - chr7_3:59412190-59412209 None:intergenic 45.0%
AGAACAAGAGATGAACGAGG+TGG - chr7_3:59412218-59412237 None:intergenic 45.0%
AGTACCAGAACAGCGAATTG+TGG - chr7_3:59412300-59412319 None:intergenic 45.0%
! TCTACCCTCTTTTCCTTCGT+GGG + chr7_3:59412322-59412341 Msa1113210:intron 45.0%
GAAAACCCACGAAGGAAAAG+AGG - chr7_3:59412330-59412349 None:intergenic 45.0%
CCGTATTTGAGAATCCACAC+TGG - chr7_3:59412639-59412658 None:intergenic 45.0%
GGACAATGATATGTTACGCC+AGG + chr7_3:59412711-59412730 Msa1113210:CDS 45.0%
TGGAATATTCCTTCAGTCCC+TGG - chr7_3:59412732-59412751 None:intergenic 45.0%
GGAGGATGTGATATCACTGT+TGG + chr7_3:59412796-59412815 Msa1113210:CDS 45.0%
CAGATATGTGGATGTTGCGT+TGG + chr7_3:59412980-59412999 Msa1113210:intron 45.0%
CATTCGAGAGAGAGAGAGTT+AGG + chr7_3:59413039-59413058 Msa1113210:intron 45.0%
AGTTGCTGGAAACTAGGCTT+AGG + chr7_3:59413081-59413100 Msa1113210:intron 45.0%
GAAACTAGGCTTAGGTGGTT+TGG + chr7_3:59413089-59413108 Msa1113210:intron 45.0%
AGTCAAATCACCAGAGACAG+AGG + chr7_3:59413170-59413189 Msa1113210:intron 45.0%
TCTAGGTATTCCTCTGTCTC+TGG - chr7_3:59413183-59413202 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr7_3:59413313-59413332 None:intergenic 45.0%
! CTAAGCCTTATCCCACTAAG+TGG - chr7_3:59413315-59413334 None:intergenic 45.0%
! CACTTTGTTTATGGCTGCAG+AGG + chr7_3:59413989-59414008 Msa1113210:intron 45.0%
! GCTGCAGAGGCATATAAGAA+TGG + chr7_3:59414002-59414021 Msa1113210:intron 45.0%
TGGAGAATTGCAGGAACTAG+TGG + chr7_3:59414022-59414041 Msa1113210:CDS 45.0%
ATTGCAGGAACTAGTGGAGA+AGG + chr7_3:59414028-59414047 Msa1113210:CDS 45.0%
TCATGAGCAAATGAGGCTTC+AGG - chr7_3:59414063-59414082 None:intergenic 45.0%
CTTGGAAAGAGAATTGCGAC+TGG + chr7_3:59412055-59412074 Msa1113210:five_prime_UTR 45.0%
! GAGTTGAAGCATGATGGTGT+TGG - chr7_3:59412167-59412186 None:intergenic 45.0%
ACATGGGAGTTGAAGCATGA+TGG - chr7_3:59412173-59412192 None:intergenic 45.0%
CAGTGACGAGGTTGTTACAT+GGG - chr7_3:59412189-59412208 None:intergenic 45.0%
ACAGTGACGAGGTTGTTACA+TGG - chr7_3:59412190-59412209 None:intergenic 45.0%
AGAACAAGAGATGAACGAGG+TGG - chr7_3:59412218-59412237 None:intergenic 45.0%
AGTACCAGAACAGCGAATTG+TGG - chr7_3:59412300-59412319 None:intergenic 45.0%
! TCTACCCTCTTTTCCTTCGT+GGG + chr7_3:59412322-59412341 Msa1113210:intron 45.0%
GAAAACCCACGAAGGAAAAG+AGG - chr7_3:59412330-59412349 None:intergenic 45.0%
CCGTATTTGAGAATCCACAC+TGG - chr7_3:59412639-59412658 None:intergenic 45.0%
GGACAATGATATGTTACGCC+AGG + chr7_3:59412711-59412730 Msa1113210:CDS 45.0%
TGGAATATTCCTTCAGTCCC+TGG - chr7_3:59412732-59412751 None:intergenic 45.0%
GGAGGATGTGATATCACTGT+TGG + chr7_3:59412796-59412815 Msa1113210:CDS 45.0%
CAGATATGTGGATGTTGCGT+TGG + chr7_3:59412980-59412999 Msa1113210:intron 45.0%
CATTCGAGAGAGAGAGAGTT+AGG + chr7_3:59413039-59413058 Msa1113210:intron 45.0%
AGTTGCTGGAAACTAGGCTT+AGG + chr7_3:59413081-59413100 Msa1113210:intron 45.0%
GAAACTAGGCTTAGGTGGTT+TGG + chr7_3:59413089-59413108 Msa1113210:intron 45.0%
AGTCAAATCACCAGAGACAG+AGG + chr7_3:59413170-59413189 Msa1113210:intron 45.0%
TCTAGGTATTCCTCTGTCTC+TGG - chr7_3:59413183-59413202 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr7_3:59413313-59413332 None:intergenic 45.0%
! CTAAGCCTTATCCCACTAAG+TGG - chr7_3:59413315-59413334 None:intergenic 45.0%
! CACTTTGTTTATGGCTGCAG+AGG + chr7_3:59413989-59414008 Msa1113210:intron 45.0%
! GCTGCAGAGGCATATAAGAA+TGG + chr7_3:59414002-59414021 Msa1113210:intron 45.0%
TGGAGAATTGCAGGAACTAG+TGG + chr7_3:59414022-59414041 Msa1113210:CDS 45.0%
ATTGCAGGAACTAGTGGAGA+AGG + chr7_3:59414028-59414047 Msa1113210:CDS 45.0%
TCATGAGCAAATGAGGCTTC+AGG - chr7_3:59414063-59414082 None:intergenic 45.0%
TCCACCACAATTCGCTGTTC+TGG + chr7_3:59412293-59412312 Msa1113210:CDS 50.0%
ACCAGAACAGCGAATTGTGG+TGG - chr7_3:59412297-59412316 None:intergenic 50.0%
! CTCTACCCTCTTTTCCTTCG+TGG + chr7_3:59412321-59412340 Msa1113210:intron 50.0%
TATGTTACGCCAGGGACTGA+AGG + chr7_3:59412720-59412739 Msa1113210:CDS 50.0%
TGGATGTTGCGTTGGATGTG+TGG + chr7_3:59412988-59413007 Msa1113210:intron 50.0%
TGCTGGAAACTAGGCTTAGG+TGG + chr7_3:59413084-59413103 Msa1113210:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr7_3:59413309-59413328 None:intergenic 50.0%
TCCACCACAATTCGCTGTTC+TGG + chr7_3:59412293-59412312 Msa1113210:CDS 50.0%
ACCAGAACAGCGAATTGTGG+TGG - chr7_3:59412297-59412316 None:intergenic 50.0%
! CTCTACCCTCTTTTCCTTCG+TGG + chr7_3:59412321-59412340 Msa1113210:intron 50.0%
TATGTTACGCCAGGGACTGA+AGG + chr7_3:59412720-59412739 Msa1113210:CDS 50.0%
TGGATGTTGCGTTGGATGTG+TGG + chr7_3:59412988-59413007 Msa1113210:intron 50.0%
TGCTGGAAACTAGGCTTAGG+TGG + chr7_3:59413084-59413103 Msa1113210:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr7_3:59413309-59413328 None:intergenic 50.0%
AGGTGGAAGAGACAGTGACG+AGG - chr7_3:59412201-59412220 None:intergenic 55.0%
CTGAGGAAAGGTAGGCCAAC+TGG - chr7_3:59412752-59412771 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr7_3:59413301-59413320 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr7_3:59413300-59413319 Msa1113210:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr7_3:59413301-59413320 Msa1113210:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr7_3:59413307-59413326 Msa1113210:intron 55.0%
AGGTGGAAGAGACAGTGACG+AGG - chr7_3:59412201-59412220 None:intergenic 55.0%
CTGAGGAAAGGTAGGCCAAC+TGG - chr7_3:59412752-59412771 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr7_3:59413301-59413320 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr7_3:59413300-59413319 Msa1113210:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr7_3:59413301-59413320 Msa1113210:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr7_3:59413307-59413326 Msa1113210:intron 55.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 59412021 59414395 59412021 ID=Msa1113210;Name=Msa1113210
chr7_3 mRNA 59412021 59414395 59412021 ID=Msa1113210-mRNA-1;Parent=Msa1113210;Name=Msa1113210-mRNA-1;_AED=0.02;_eAED=0.02;_QI=92|0.66|0.5|1|0.66|0.5|4|331|163
chr7_3 exon 59412021 59412314 59412021 ID=Msa1113210-mRNA-1:exon:13167;Parent=Msa1113210-mRNA-1
chr7_3 exon 59412550 59412605 59412550 ID=Msa1113210-mRNA-1:exon:13168;Parent=Msa1113210-mRNA-1
chr7_3 exon 59412640 59412817 59412640 ID=Msa1113210-mRNA-1:exon:13169;Parent=Msa1113210-mRNA-1
chr7_3 exon 59414009 59414395 59414009 ID=Msa1113210-mRNA-1:exon:13170;Parent=Msa1113210-mRNA-1
chr7_3 five_prime_UTR 59412021 59412112 59412021 ID=Msa1113210-mRNA-1:five_prime_utr;Parent=Msa1113210-mRNA-1
chr7_3 CDS 59412113 59412314 59412113 ID=Msa1113210-mRNA-1:cds;Parent=Msa1113210-mRNA-1
chr7_3 CDS 59412550 59412605 59412550 ID=Msa1113210-mRNA-1:cds;Parent=Msa1113210-mRNA-1
chr7_3 CDS 59412640 59412817 59412640 ID=Msa1113210-mRNA-1:cds;Parent=Msa1113210-mRNA-1
chr7_3 CDS 59414009 59414064 59414009 ID=Msa1113210-mRNA-1:cds;Parent=Msa1113210-mRNA-1
chr7_3 three_prime_UTR 59414065 59414395 59414065 ID=Msa1113210-mRNA-1:three_prime_utr;Parent=Msa1113210-mRNA-1
Gene Sequence

>Msa1113210

ATGTCTTTGAGTTCGTGCGTTAAACCATTCTCTTTGCAAGTACTCTTGTATCCAACACCATCATGCTTCAACTCCCATGTAACAACCTCGTCACTGTCTCTTCCACCTCGTTCATCTCTTGTTCTTAAACAAAACACTATTTTCCATTCCCAACCCAAAATTCAACTCAAACAACGTTTTTCCACCACAATTCGCTGTTCTGCTTTGACTCCTGAATTGAAGACCACATTGGATAAAGTTGTTACATCAAACAAAATATGTGGATTCTCAAATACGGTTGTGCAAATTTTGAGGTCTTTGAATGCGTCTTTTGAAACGATAAACATATTGGACAATGATATGTTACGCCAGGGACTGAAGGAATATTCCAGTTGGCCTACCTTTCCTCAGCTCTATATTGATGGAGAGTTTTTTGGAGGATGTGATATCACTGTTGAGGCATATAAGAATGGAGAATTGCAGGAACTAGTGGAGAAGGCAATGTGCTCCTGA

Protein sequence

>Msa1113210

MSLSSCVKPFSLQVLLYPTPSCFNSHVTTSSLSLPPRSSLVLKQNTIFHSQPKIQLKQRFSTTIRCSALTPELKTTLDKVVTSNKICGFSNTVVQILRSLNASFETINILDNDMLRQGLKEYSSWPTFPQLYIDGEFFGGCDITVEAYKNGELQELVEKAMCS*