AlfalfaGEDB | Msa0404220

M. sativa cultivar zhongmu-4 / Msa0404220

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363
PFAM: PF13041.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0404220	XP_013461683.2	94.118	527	27	1	1	523	1	527	0.0	1013

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0404220	sp\|Q3E911\|PP400_ARATH	54.105	475	210	4	39	508	20	491	1.52e-177	511

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0404220	A0A072V2Y1	94.118	527	27	1	1	523	1	527	0.0	1013

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003560	Msa0404220	0.821729	3.458566e-53	-8.615850e-47
Msa0006700	Msa0404220	0.852449	4.582709e-61	-8.615850e-47
Msa0030030	Msa0404220	0.819438	1.161257e-52	-8.615850e-47
Msa0050730	Msa0404220	0.803331	3.669389e-49	-8.615850e-47
Msa0055280	Msa0404220	0.855029	8.297595e-62	-8.615850e-47
Msa0071550	Msa0404220	0.816361	5.753515e-52	-8.615850e-47
Msa0077330	Msa0404220	0.804245	2.369281e-49	-8.615850e-47
Msa0096020	Msa0404220	0.826325	2.885667e-54	-8.615850e-47
Msa0101060	Msa0404220	0.856633	2.819848e-62	-8.615850e-47
Msa0153430	Msa0404220	0.812970	3.242651e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0404220	MtrunA17_Chr3g0132571	92.925	523	17	1	1	523	1	503	0.0	1000
Msa0404220	MtrunA17_Chr8g0359961	31.749	463	312	3	50	511	26	485	7.90e-76	248
Msa0404220	MtrunA17_Chr1g0185601	31.337	501	328	8	28	518	2	496	1.32e-75	247
Msa0404220	MtrunA17_Chr2g0282091	28.041	485	341	4	40	519	7	488	2.04e-60	207
Msa0404220	MtrunA17_Chr4g0021331	29.120	443	290	9	75	506	45	474	3.13e-59	203
Msa0404220	MtrunA17_Chr8g0368151	29.695	394	272	3	77	468	43	433	1.09e-57	199
Msa0404220	MtrunA17_Chr1g0155351	29.353	402	275	5	6	405	8	402	3.07e-56	193
Msa0404220	MtrunA17_Chr2g0303221	28.474	439	294	9	39	466	8	437	3.30e-56	195
Msa0404220	MtrunA17_Chr2g0324251	29.691	421	283	5	74	486	49	464	3.43e-52	184
Msa0404220	MtrunA17_Chr1g0194521	28.846	416	281	7	56	466	89	494	9.84e-52	184

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0404220	AT5G27460.1	54.105	475	210	4	39	508	20	491	1.54e-178	511
Msa0404220	AT1G02150.1	34.375	384	246	3	76	458	86	464	1.07e-79	259
Msa0404220	AT4G02820.1	30.802	474	322	4	46	519	50	517	3.59e-77	252
Msa0404220	AT4G21705.1	28.862	492	339	4	29	518	4	486	8.72e-69	229
Msa0404220	AT1G02370.1	28.889	450	308	5	76	519	90	533	1.53e-65	222
Msa0404220	AT2G20710.1	30.465	430	294	4	34	462	15	440	4.29e-64	217
Msa0404220	AT1G60770.1	31.738	397	264	4	126	518	91	484	8.12e-61	208
Msa0404220	AT4G01990.1	27.640	445	314	4	76	518	59	497	1.11e-56	197
Msa0404220	AT5G09450.1	31.395	344	231	4	55	395	53	394	4.59e-56	193
Msa0404220	AT2G20710.2	30.946	349	236	4	115	462	1	345	4.17e-48	171

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Find 190 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATATTCACCTCATGAAAA+AGG	0.287129	3_2:-34997038	None:intergenic
AAATGATGAGAATGTTGAAA+TGG	0.383490	3_2:+34996103	Msa0404220:CDS
AAATTGCCGCTAAATGTAAA+TGG	0.340649	3_2:-34994607	None:intergenic
AACAAGCTTGGTGAAGCTTG+GGG	0.626479	3_2:+34996361	Msa0404220:CDS
AACTAGGAATGAGAAAGAGC+AGG	0.568013	3_2:-34999674	Msa0404230:five_prime_UTR
AACTGAGATGCATCTCCAGA+AGG	0.596914	3_2:+34994959	Msa0404220:CDS
AACTTCAGAGCATGATCAGC+TGG	0.404901	3_2:-34995705	None:intergenic
AAGAAAGTCATCGAAGTAAG+TGG	0.546614	3_2:+34998747	Msa0404220:three_prime_UTR
AAGGTGGTTCTTGAGCAGAA+AGG	0.666643	3_2:-34996799	None:intergenic
AAGTGGGCTCTTGAACTAAA+AGG	0.296086	3_2:-34999572	Msa0404230:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTGCCGCTAAATGTAAA+TGG	-	chr3_2:34994610-34994629	None:intergenic	30.0%
ACAGAAATTCAACAGAGAAA+TGG	-	chr3_2:34995207-34995226	None:intergenic	30.0%
ATTTCCAAAAAACCTTCAAG+CGG	-	chr3_2:34995242-34995261	None:intergenic	30.0%
GCTATAGTGAAGTGATTATA+AGG	-	chr3_2:34995449-34995468	None:intergenic	30.0%
AAGCTGTAATCAATCCATAA+TGG	-	chr3_2:34995503-34995522	None:intergenic	30.0%
AAGATACTGTAACTGATCAT+CGG	+	chr3_2:34995528-34995547	Msa0404220:intron	30.0%
AGTTAATCGCTAAAAACTGT+GGG	+	chr3_2:34995730-34995749	Msa0404220:CDS	30.0%
TTGTAAGACAGAACATTCAA+GGG	-	chr3_2:34996008-34996027	None:intergenic	30.0%
TATTTGCATACTAACAAGCT+TGG	+	chr3_2:34996349-34996368	Msa0404220:CDS	30.0%
TCATTGAAGGATATGTCAAT+TGG	+	chr3_2:34996567-34996586	Msa0404220:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	34994561	34999710	34994561	ID=Msa0404220;Name=Msa0404220
chr3_2	mRNA	34994561	34999710	34994561	ID=Msa0404220-mRNA-1;Parent=Msa0404220;Name=Msa0404220-mRNA-1;_AED=0.07;_eAED=0.07;_QI=127\|1\|1\|1\|0.25\|0.2\|5\|1041\|523
chr3_2	exon	34994561	34995017	34994561	ID=Msa0404220-mRNA-1:exon:7162;Parent=Msa0404220-mRNA-1
chr3_2	exon	34995663	34997050	34995663	ID=Msa0404220-mRNA-1:exon:7163;Parent=Msa0404220-mRNA-1
chr3_2	exon	34997457	34997608	34997457	ID=Msa0404220-mRNA-1:exon:7164;Parent=Msa0404220-mRNA-1
chr3_2	exon	34998636	34999007	34998636	ID=Msa0404220-mRNA-1:exon:7165;Parent=Msa0404220-mRNA-1
chr3_2	exon	34999340	34999710	34999340	ID=Msa0404220-mRNA-1:exon:7166;Parent=Msa0404220-mRNA-1
chr3_2	five_prime_UTR	34994561	34994687	34994561	ID=Msa0404220-mRNA-1:five_prime_utr;Parent=Msa0404220-mRNA-1
chr3_2	CDS	34994688	34995017	34994688	ID=Msa0404220-mRNA-1:cds;Parent=Msa0404220-mRNA-1
chr3_2	CDS	34995663	34996904	34995663	ID=Msa0404220-mRNA-1:cds;Parent=Msa0404220-mRNA-1
chr3_2	three_prime_UTR	34996905	34997050	34996905	ID=Msa0404220-mRNA-1:three_prime_utr;Parent=Msa0404220-mRNA-1
chr3_2	three_prime_UTR	34997457	34997608	34997457	ID=Msa0404220-mRNA-1:three_prime_utr;Parent=Msa0404220-mRNA-1
chr3_2	three_prime_UTR	34998636	34999007	34998636	ID=Msa0404220-mRNA-1:three_prime_utr;Parent=Msa0404220-mRNA-1
chr3_2	three_prime_UTR	34999340	34999710	34999340	ID=Msa0404220-mRNA-1:three_prime_utr;Parent=Msa0404220-mRNA-1

Gene Sequence

>Msa0404220

ATGGCGAACCAATCTCTCACCGCCGTGATACGACGGTACGACACGCTGAATCTTTCTCTTACTAATTCCCCATATACTTCTTCTCTTCGCAGCAGCATCAGTTTCTTTTTGGGCGCACGAACTCTCTACACACACGCAGATTCTCGCACTTCTACATTTTCAGATAAACAGAATCTGAAGAGCTTAATTGCGCGATTCAAACCTTCAACGCAAACTCCATTGCCAGTGCTTCAAAATTGGATCGATCAAGGTAACAAGCTTTCATCATCGGAACTGAGATGCATCTCCAGAAGGCTCATCAAATCCAAACGCTACAATCACGCATTCGAGGTATTCAACTGGATGGAAAACCAACAAAAATTCCGCATAAACCCAGCTGATCATGCTCTGAAGTTGGAGTTAATCGCTAAAAACTGTGGGCTAATGGAAGCTGAAGAATATTTTATGCGTATACCTGACTCAGCTGGAAAGAAAGCCGCCTATCTCCCACTTCTACGTGGCTATGTAGGAGATAGGGACACCAGTAAAGCTGAGACGTTCATGGAGAAGCTCTATGAACTGGGGCTAGTGGTAAACGCTCACCCTTATAATGAAATGATGAAACTATATCTTGCCACATGTGAGTACCGAAAGGTACCCCTAGTTATCCAACAAATAAAACGAAATAAAGTACCCTTGAATGTTCTGTCTTACAACCTTTGGATGAGTGCTTGTGATGAGGGAGAGCGATATGGGGTTGCAGCAGTGGAAACAGTTTTTAGAGAAATGCAAAATGATGAGAATGTTGAAATGGGATGGAGCAGTCTTGCTACTTTAGCCAATGTGTATATGAAAGCAGGACAATATGAGAAAGCCATTCTAGTTCTAAAAAATGCCGAAGAGAAACTGTCTACATGTAATCGTCTTGGTTACTTCTTCATCATAACACTATACGCCTCTTTGAAGCAAAAGGAGGGAGTCTTGCGGCTGTGGGAAGCCAGTAAGGCAGTTGGTGGAAGAATCAGTTGTGCCAACTATATTTGCATACTAACAAGCTTGGTGAAGCTTGGGGACATAGCACAAGCCAGAAGAATCTTCAGAGAATGGGAATCTAATTGTCAAAAATATGATATCAGAGTCTCTAATGTTCTTTTAGGAGCATATGTGCGGAATGGATTAATAGAAGAAGCTGAATCATTGCATCTCCACACATTGCAGAAGGGTGGCTGTCCAAACTACAAGACGTGGGAAATTCTCATTGAAGGATATGTCAATTGGCAAAAGATGGATGAGGCTATTATTGCCATGAAAAGAGCTTTGGCTATGTTGAAAGACTGCCATTGGAGGCCGCCACAAAGAATTGTATTAGCCATAGCTGAATATTTGGAGAAATGTGGGAATTTTGAATATGCAAATGAGTACATCACAGATATTCATAATTTAGGTCTTGGAAGTTTATCATTGTATAAAATATTGCTTAGAATGCACCTTTCTGCTCAAGAACCACCTTTCCATGTCCTTAAAATGATCAATAAAGACAAAATGGAGATGGATAGTGAGACTGTTTCCATTCTTAAAGGCTTCACTGGGTAA

Protein sequence

>Msa0404220

MANQSLTAVIRRYDTLNLSLTNSPYTSSLRSSISFFLGARTLYTHADSRTSTFSDKQNLKSLIARFKPSTQTPLPVLQNWIDQGNKLSSSELRCISRRLIKSKRYNHAFEVFNWMENQQKFRINPADHALKLELIAKNCGLMEAEEYFMRIPDSAGKKAAYLPLLRGYVGDRDTSKAETFMEKLYELGLVVNAHPYNEMMKLYLATCEYRKVPLVIQQIKRNKVPLNVLSYNLWMSACDEGERYGVAAVETVFREMQNDENVEMGWSSLATLANVYMKAGQYEKAILVLKNAEEKLSTCNRLGYFFIITLYASLKQKEGVLRLWEASKAVGGRISCANYICILTSLVKLGDIAQARRIFREWESNCQKYDIRVSNVLLGAYVRNGLIEEAESLHLHTLQKGGCPNYKTWEILIEGYVNWQKMDEAIIAMKRALAMLKDCHWRPPQRIVLAIAEYLEKCGNFEYANEYITDIHNLGLGSLSLYKILLRMHLSAQEPPFHVLKMINKDKMEMDSETVSILKGFTG*