AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0565700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0565700 MtrunA17_Chr8g0379911 98.141 269 5 0 1 269 1 269 0.0 531
Msa0565700 MtrunA17_Chr8g0379901 73.308 266 71 0 2 267 3 268 2.07e-150 421
Msa0565700 MtrunA17_Chr2g0284581 75.746 268 65 0 1 268 1 268 8.26e-150 419
Msa0565700 MtrunA17_Chr2g0284591 75.769 260 63 0 7 266 5 264 1.92e-147 413
Msa0565700 MtrunA17_Chr2g0284611 71.805 266 75 0 1 266 1 266 5.28e-140 394
Msa0565700 MtrunA17_Chr2g0284631 64.000 275 92 2 1 268 53 327 5.43e-131 374
Msa0565700 MtrunA17_Chr2g0284601 80.930 215 41 0 54 268 6 220 1.76e-128 363
Msa0565700 MtrunA17_Chr4g0044201 59.914 232 78 2 37 266 34 252 3.85e-98 288
Msa0565700 MtrunA17_Chr5g0435051 54.867 226 101 1 28 253 30 254 2.22e-86 258
Msa0565700 MtrunA17_Chr3g0079421 53.279 244 111 2 28 269 16 258 6.75e-86 257
Msa0565700 MtrunA17_Chr7g0217331 49.402 251 125 2 1 251 1 249 2.87e-79 240
Msa0565700 MtrunA17_Chr4g0001221 53.744 227 100 2 38 262 75 298 1.26e-76 234
Msa0565700 MtrunA17_Chr2g0333771 51.101 227 106 2 38 262 80 303 3.25e-75 231
Msa0565700 MtrunA17_Chr1g0201331 49.356 233 107 3 35 259 71 300 4.46e-69 215
Msa0565700 MtrunA17_Chr5g0426131 45.349 258 124 5 4 255 8 254 1.79e-66 207
Msa0565700 MtrunA17_Chr1g0184541 38.073 218 134 1 35 252 59 275 3.79e-49 164
Msa0565700 MtrunA17_Chr4g0001111 52.740 146 64 2 38 181 75 217 4.57e-40 138
Msa0565700 MtrunA17_Chr4g0001161 50.735 136 62 2 51 184 1 133 1.44e-34 122
Msa0565700 MtrunA17_Chr4g0001121 54.651 86 39 0 177 262 6 91 2.00e-28 104
Msa0565700 MtrunA17_Chr8g0340161 31.915 235 149 4 26 252 10 241 4.83e-25 100
Msa0565700 MtrunA17_Chr2g0331261 32.653 245 152 4 26 263 11 249 7.62e-25 99.4
Msa0565700 MtrunA17_Chr1g0188771 31.197 234 152 4 27 253 12 243 1.83e-23 95.9
Msa0565700 MtrunA17_Chr5g0399341 33.198 247 145 7 23 256 7 246 1.90e-23 95.9
Msa0565700 MtrunA17_Chr4g0001151 44.361 133 54 3 51 181 1 115 2.70e-23 96.7
Msa0565700 MtrunA17_Chr1g0146161 32.093 215 137 6 37 245 18 229 9.77e-22 91.3
Msa0565700 MtrunA17_Chr1g0146171 31.034 232 150 6 19 245 3 229 6.46e-21 89.0
Msa0565700 MtrunA17_Chr6g0478191 29.114 237 153 6 27 253 12 243 5.62e-20 86.7
Msa0565700 MtrunA17_Chr3g0145671 30.303 231 140 5 35 247 34 261 8.37e-19 83.6
Msa0565700 MtrunA17_Chr7g0264111 28.879 232 144 5 27 237 28 259 2.35e-18 82.8
Msa0565700 MtrunA17_Chr4g0030861 31.416 226 143 4 43 256 26 251 3.83e-18 81.3
Msa0565700 MtrunA17_Chr7g0264961 30.802 237 143 7 23 247 9 236 4.36e-18 81.3
Msa0565700 MtrunA17_Chr1g0212671 32.068 237 147 7 37 263 20 252 4.41e-18 81.3
Msa0565700 MtrunA17_Chr2g0326621 28.821 229 145 5 32 247 48 271 6.00e-17 78.6
Msa0565700 MtrunA17_Chr4g0006001 27.193 228 151 6 35 247 53 280 1.36e-16 77.8
Msa0565700 MtrunA17_Chr5g0397391 26.201 229 153 5 35 247 49 277 2.42e-16 77.0
Msa0565700 MtrunA17_Chr3g0113211 26.638 229 152 5 35 247 52 280 2.69e-16 77.0
Msa0565700 MtrunA17_Chr8g0386961 27.500 240 157 6 35 258 49 287 4.05e-16 76.3
Msa0565700 MtrunA17_Chr5g0436701 28.448 232 143 8 35 247 52 279 5.74e-16 75.9
Msa0565700 MtrunA17_Chr4g0020781 31.034 174 111 4 84 252 30 199 3.61e-15 72.4
Msa0565700 MtrunA17_Chr1g0199731 26.531 245 153 5 27 247 28 269 4.47e-15 73.6
Msa0565700 MtrunA17_Chr4g0029071 27.848 237 144 7 35 247 36 269 2.20e-14 71.6
Msa0565700 MtrunA17_Chr7g0222791 27.155 232 162 2 37 261 20 251 6.06e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0565700 AT4G18910.1 74.400 250 57 1 26 268 40 289 1.78e-136 387
Msa0565700 AT4G19030.1 64.685 286 80 3 4 268 7 292 6.14e-133 378
Msa0565700 AT5G37810.1 59.917 242 97 0 28 269 33 274 1.61e-104 305
Msa0565700 AT5G37820.1 56.107 262 109 1 11 266 10 271 1.13e-101 298
Msa0565700 AT5G37820.2 56.107 262 109 1 11 266 46 307 4.47e-101 298
Msa0565700 AT2G34390.1 53.623 276 112 4 5 265 7 281 3.20e-98 290
Msa0565700 AT1G31885.1 50.558 269 122 2 2 259 3 271 2.92e-97 288
Msa0565700 AT4G18910.2 75.000 184 39 1 25 201 39 222 1.86e-93 275
Msa0565700 AT4G19030.3 63.761 218 58 3 4 200 7 224 5.21e-92 271
Msa0565700 AT2G34390.2 55.932 236 96 2 34 262 2 236 1.24e-91 271
Msa0565700 AT1G31885.2 55.760 217 89 1 50 259 1 217 5.26e-89 265
Msa0565700 AT4G19030.2 61.809 199 55 3 4 181 7 205 2.32e-80 241
Msa0565700 AT2G34390.3 55.189 212 79 4 5 201 7 217 1.72e-74 226
Msa0565700 AT1G80760.1 52.294 218 103 1 35 252 77 293 1.62e-72 224
Msa0565700 AT4G10380.1 50.215 233 105 3 35 259 75 304 1.62e-71 222
Msa0565700 AT2G34390.4 54.124 194 73 4 5 183 7 199 2.19e-66 206
Msa0565700 AT3G06100.1 38.356 219 133 2 37 254 45 262 1.17e-46 157
Msa0565700 AT3G06100.2 38.785 214 129 2 41 253 1 213 2.33e-46 155
Msa0565700 AT1G31885.3 47.863 117 57 1 2 114 3 119 8.91e-34 120
Msa0565700 AT2G29870.1 55.789 95 42 0 153 247 20 114 1.76e-32 116
Msa0565700 AT3G16240.1 33.333 231 136 6 26 245 10 233 7.69e-27 105
Msa0565700 AT5G47450.1 33.755 237 143 5 33 257 14 248 1.61e-26 104
Msa0565700 AT3G06100.3 35.915 142 89 2 114 254 41 181 6.93e-25 98.6
Msa0565700 AT4G17340.1 32.645 242 146 7 27 256 11 247 2.04e-23 95.9
Msa0565700 AT1G17810.1 29.730 259 166 5 16 260 4 260 5.21e-23 95.5
Msa0565700 AT3G26520.1 29.845 258 160 7 18 263 5 253 1.43e-21 91.3
Msa0565700 AT2G16850.1 30.702 228 143 5 35 247 33 260 1.03e-20 89.4
Msa0565700 AT2G25810.1 31.878 229 144 8 32 253 13 236 1.74e-20 88.2
Msa0565700 AT2G36830.1 32.353 238 146 5 18 246 5 236 2.26e-20 87.8
Msa0565700 AT4G35100.1 31.579 228 141 5 35 247 35 262 2.97e-20 88.2
Msa0565700 AT4G35100.2 31.579 228 141 5 35 247 35 262 2.97e-20 88.2
Msa0565700 AT1G73190.1 28.000 250 166 4 16 253 4 251 9.40e-20 86.7
Msa0565700 AT2G39010.1 29.362 235 143 6 35 247 35 268 2.95e-18 82.8
Msa0565700 AT3G47440.1 29.032 217 144 3 37 245 22 236 4.16e-18 81.6
Msa0565700 AT2G45960.1 29.310 232 146 6 32 247 46 275 4.92e-18 82.0
Msa0565700 AT3G61430.2 28.821 229 145 6 35 247 49 275 5.84e-18 82.0
Msa0565700 AT3G61430.1 28.821 229 145 6 35 247 49 275 5.84e-18 82.0
Msa0565700 AT1G01620.1 28.139 231 145 5 35 247 49 276 2.18e-17 80.5
Msa0565700 AT4G23400.1 27.706 231 146 5 35 247 50 277 3.56e-17 79.7
Msa0565700 AT5G60660.1 25.746 268 161 6 15 247 5 269 3.92e-17 79.7
Msa0565700 AT4G00430.1 28.139 231 145 5 35 247 50 277 4.17e-17 79.7
Msa0565700 AT3G54820.1 26.033 242 158 4 27 247 27 268 4.81e-16 76.6
Msa0565700 AT3G53420.1 25.714 245 155 5 27 247 28 269 9.16e-16 75.9
Msa0565700 AT3G53420.2 25.714 245 155 5 27 247 28 269 9.16e-16 75.9
Msa0565700 AT4G01470.1 32.749 171 113 1 79 247 67 237 1.29e-15 74.7
Msa0565700 AT2G45960.2 28.922 204 131 4 32 222 46 248 1.69e-14 72.0
Msa0565700 AT2G45960.3 28.922 204 131 4 32 222 46 248 2.23e-14 72.0
Msa0565700 AT2G37170.2 25.306 245 156 5 27 247 69 310 2.71e-14 72.0
Msa0565700 AT2G37170.1 25.306 245 156 5 27 247 26 267 2.92e-14 71.6
Msa0565700 AT1G01620.2 28.718 195 121 4 68 247 13 204 4.38e-14 70.1
Msa0565700 AT2G37180.1 25.306 245 156 5 27 247 26 267 1.26e-13 69.7

Find 80 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCTTATGTTTATCATATC+TGG 0.173723 4_1:-66569631 Msa0565700:CDS
TTCCTGGAATTTCAATTGTT+TGG 0.217869 4_1:-66570405 Msa0565700:CDS
TCCTGGAATTTCAATTGTTT+GGG 0.246530 4_1:-66570404 Msa0565700:CDS
TATGTAGCAGCTCAAGTCTT+TGG 0.269360 4_1:-66569775 Msa0565700:CDS
TACTTGGTGTCTCCTATTCT+TGG 0.280405 4_1:-66568626 Msa0565700:CDS
CTGTTTCAAGGGAAATCTTT+TGG 0.298217 4_1:+66570294 None:intergenic
GAAAATGTTGTAACACTTCC+TGG 0.313477 4_1:-66570421 Msa0565700:CDS
TTCATTGATGCTCCTGTGAT+TGG 0.328945 4_1:+66568707 None:intergenic
ACATATTTCTTGATATTTGC+TGG 0.333245 4_1:-66570475 Msa0565700:CDS
CATCTTTAAATGACATTTCA+AGG 0.337966 4_1:+66568377 None:intergenic
TACTCTCTTGGTCACATCTC+TGG 0.349138 4_1:-66570358 Msa0565700:CDS
GCAGGTCCTATACTTCTTGC+TGG 0.362295 4_1:+66568683 None:intergenic
ATGGTGCTGGTTTACTCTCT+TGG 0.376622 4_1:-66570370 Msa0565700:CDS
CCCCAAACAATTGAAATTCC+AGG 0.378868 4_1:+66570403 None:intergenic
CACTGCTTCTTTCTTGCAGA+AGG 0.380717 4_1:-66570679 Msa0565700:intron
TTGGAGCTGTGGCTGGTGCA+TGG 0.386493 4_1:-66568607 Msa0565700:CDS
TACGTTTAAAACAATCTCAT+TGG 0.388236 4_1:+66570746 None:intergenic
CTGTTAGAGGAACAAGAAAA+TGG 0.391643 4_1:+66570799 None:intergenic
CAAAAGATTTCCCTTGAAAC+AGG 0.391841 4_1:-66570293 Msa0565700:intron
GGGACTTGCTGTGATGGTGC+TGG 0.409165 4_1:-66570383 Msa0565700:CDS
CCTATTCTTGGAGCTGTGGC+TGG 0.421647 4_1:-66568614 Msa0565700:CDS
TGGAGCTGTGGCTGGTGCAT+GGG 0.426749 4_1:-66568606 Msa0565700:CDS
CCAGCCACAGCTCCAAGAAT+AGG 0.454788 4_1:+66568614 None:intergenic
GAGTTTGGTCACCTGTTTCA+AGG 0.455962 4_1:+66570282 None:intergenic
TTATAGATCACTATTTATCA+AGG 0.456266 4_1:-66568331 Msa0565700:three_prime_UTR
ACAGTGAATACAGAGGAATA+TGG 0.460120 4_1:-66568652 Msa0565700:CDS
TTTATCAAGGATGAAGTAGA+AGG 0.468815 4_1:-66568318 Msa0565700:three_prime_UTR
ATGAATCCAGCAAGAAGTAT+AGG 0.469904 4_1:-66568689 Msa0565700:CDS
CAAAACCATAGGGCTGACTT+TGG 0.480930 4_1:-66568511 Msa0565700:exon
ATTCAATCACAAAAGCTTGA+AGG 0.482940 4_1:+66569668 None:intergenic
TGCAGATTGGTGAGTTGGCT+GGG 0.483568 4_1:-66569240 Msa0565700:intron
TGCTGGTTGTGCTTCAGTGT+TGG 0.486213 4_1:-66570458 Msa0565700:CDS
TGTTTGGGGACTTGCTGTGA+TGG 0.487027 4_1:-66570389 Msa0565700:CDS
TTGCAGATTGGTGAGTTGGC+TGG 0.488849 4_1:-66569241 Msa0565700:intron
CTCTTGGTGATCTCGCGAAC+CGG 0.489371 4_1:+66568554 None:intergenic
ACTCTTAGACTAATATTTGT+CGG 0.492625 4_1:-66569733 Msa0565700:CDS
CATGGGTTTATAACGTCATT+CGG 0.494271 4_1:-66568589 Msa0565700:CDS
CAGTTGGTAGCTGAGGTGAT+AGG 0.497515 4_1:-66570499 Msa0565700:CDS
CAGAGGAATATGGATATACT+TGG 0.503606 4_1:-66568642 Msa0565700:CDS
CTCCAGATATGATAAACATA+AGG 0.504080 4_1:+66569629 None:intergenic
AAACTTGCAGATTGGTGAGT+TGG 0.505757 4_1:-66569245 Msa0565700:intron
GGCAAACATAATCAGTTTGT+AGG 0.507853 4_1:-66569712 Msa0565700:CDS
TTTGTAGGAACACTTCCAGC+TGG 0.512114 4_1:-66569697 Msa0565700:CDS
GAAAGAAGCAGTGGCATGAG+AGG 0.513919 4_1:+66570689 None:intergenic
CATAACATGTGATATACCTA+AGG 0.515975 4_1:+66568463 None:intergenic
TATTCACTGTGTAGAAAAGC+AGG 0.516811 4_1:+66568665 None:intergenic
GCTTGAAGGTCAGACCCAGC+TGG 0.524734 4_1:+66569682 None:intergenic
ATCAACCAAAGTCAGCCCTA+TGG 0.530318 4_1:+66568506 None:intergenic
TCTAAACGTGGATACTTCCA+AGG 0.530932 4_1:-66568428 Msa0565700:three_prime_UTR
ACTTGAGCTGCTACATAAGC+TGG 0.538226 4_1:+66569781 None:intergenic
CCTAAAAGCAGCAAAACCAT+AGG 0.538587 4_1:-66568522 Msa0565700:exon
CCTGGAATTTCAATTGTTTG+GGG 0.538744 4_1:-66570403 Msa0565700:CDS
ACTTGGTAAAGCAGAATACA+AGG 0.543009 4_1:+66568216 None:intergenic
GAGTTGGCTGGGATTGCCGT+TGG 0.544203 4_1:-66569229 Msa0565700:CDS
TCTTGTTCCTCTAACAGTGA+TGG 0.546360 4_1:-66570793 Msa0565700:exon
GTCTCCTATTCTTGGAGCTG+TGG 0.546485 4_1:-66568618 Msa0565700:CDS
AAGAGTTCCACTTGCAAGTG+TGG 0.546686 4_1:+66569750 None:intergenic
CATTCGGTACACGGATAAGC+CGG 0.557498 4_1:-66568573 Msa0565700:CDS
GCAAAAGCAATGGTAACTGC+AGG 0.558375 4_1:+66570322 None:intergenic
TATCATAAAGCATAAAATGT+TGG 0.558919 4_1:-66568242 Msa0565700:three_prime_UTR
AGTTTGGTCACCTGTTTCAA+GGG 0.560701 4_1:+66570283 None:intergenic
TTGTAGGAACACTTCCAGCT+GGG 0.562595 4_1:-66569696 Msa0565700:CDS
CATCGTATTTCTCATCTCAA+AGG 0.565229 4_1:-66570849 Msa0565700:five_prime_UTR
ATTTATGCAGTTGGTAGCTG+AGG 0.567762 4_1:-66570506 Msa0565700:intron
CTTTGAGATGAGAAATACGA+TGG 0.570576 4_1:+66570850 None:intergenic
AAAGCATATTGATTTCCCCT+TGG 0.572159 4_1:+66568411 None:intergenic
TTTGGATCCACACTTGCAAG+TGG 0.582538 4_1:-66569757 Msa0565700:CDS
CTAAAAGCAGCAAAACCATA+GGG 0.583342 4_1:-66568521 Msa0565700:exon
TTATAACGTCATTCGGTACA+CGG 0.586612 4_1:-66568582 Msa0565700:CDS
AATATCACTAATAGTATACA+TGG 0.586944 4_1:-66568292 Msa0565700:three_prime_UTR
TTTGGTGCTAGCAAAAGCAA+TGG 0.603584 4_1:+66570312 None:intergenic
TTATATGACAGACCAATCAC+AGG 0.604024 4_1:-66568719 Msa0565700:intron
CAAAAGTACAGTAGATCCAA+CGG 0.621362 4_1:+66569213 None:intergenic
CTAAACGTGGATACTTCCAA+GGG 0.621976 4_1:-66568427 Msa0565700:three_prime_UTR
ATAACATGTGATATACCTAA+GGG 0.649187 4_1:+66568464 None:intergenic
CGTTACCGCTCTATTATCAG+TGG 0.661375 4_1:+66569603 None:intergenic
CTTCTGCAAGAAAGAAGCAG+TGG 0.662046 4_1:+66570680 None:intergenic
TTTCTACACAGTGAATACAG+AGG 0.725695 4_1:-66568659 Msa0565700:CDS
AGTTGCCACTGATAATAGAG+CGG 0.742875 4_1:-66569608 Msa0565700:intron
TAAACGTGGATACTTCCAAG+GGG 0.744863 4_1:-66568426 Msa0565700:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTATTATTTTTTAAAA+TGG + chr4_1:66570070-66570089 None:intergenic 0.0%
!! TATTATAAACTAATATGAAA+AGG + chr4_1:66568939-66568958 None:intergenic 10.0%
!!! TGATAATATTGAATAATTTT+GGG + chr4_1:66569925-66569944 None:intergenic 10.0%
!!! ATGATAATATTGAATAATTT+TGG + chr4_1:66569926-66569945 None:intergenic 10.0%
!!! TTTGCTATTTGATTTATTAA+AGG - chr4_1:66568490-66568509 Msa0565700:three_prime_UTR 15.0%
!! TAGGGAATAAAATAAAAAAT+TGG - chr4_1:66569012-66569031 Msa0565700:intron 15.0%
!! AGGGAATAAAATAAAAAATT+GGG - chr4_1:66569013-66569032 Msa0565700:intron 15.0%
!! GAATTACAAATATTCAAATA+TGG + chr4_1:66569773-66569792 None:intergenic 15.0%
!! TGTGATTTAGTATTTATTAT+TGG - chr4_1:66570002-66570021 Msa0565700:intron 15.0%
!! AAATATGATTGATTATCATT+TGG + chr4_1:66570211-66570230 None:intergenic 15.0%
!!! AATCTGAAACTTTTTTTTCA+TGG - chr4_1:66568543-66568562 Msa0565700:CDS 20.0%
!! AATAATTGACATGATTTCTT+TGG + chr4_1:66568963-66568982 None:intergenic 20.0%
!!! AATTTCATCACTCTTTATTT+TGG - chr4_1:66569555-66569574 Msa0565700:intron 20.0%
!! TCAAACTCTAATATAAAAAG+AGG - chr4_1:66569635-66569654 Msa0565700:CDS 20.0%
!! ATAAAAGCCAATAAATAGAA+TGG + chr4_1:66569801-66569820 None:intergenic 20.0%
!! TTATAGATCACTATTTATCA+AGG - chr4_1:66570752-66570771 Msa0565700:CDS 20.0%
!! AATATCACTAATAGTATACA+TGG - chr4_1:66570791-66570810 Msa0565700:exon 20.0%
!! TATCATAAAGCATAAAATGT+TGG - chr4_1:66570841-66570860 Msa0565700:five_prime_UTR 20.0%
!! TACGTTTAAAACAATCTCAT+TGG + chr4_1:66568340-66568359 None:intergenic 25.0%
!!! GATTGTTTTAAACGTAAACA+AGG - chr4_1:66568344-66568363 Msa0565700:three_prime_UTR 25.0%
! ACATATTTCTTGATATTTGC+TGG - chr4_1:66568608-66568627 Msa0565700:CDS 25.0%
! TTTGCCAAATAGTTGAAAAA+TGG + chr4_1:66568828-66568847 None:intergenic 25.0%
!!! AAAACTTGTTAGGAAATTAG+AGG - chr4_1:66568845-66568864 Msa0565700:intron 25.0%
!!! ATTCATTTTTCAAGCAAAGT+AGG + chr4_1:66568894-66568913 None:intergenic 25.0%
! AACACACAATTTCATTGAAT+AGG - chr4_1:66568993-66569012 Msa0565700:intron 25.0%
! ACACACAATTTCATTGAATA+GGG - chr4_1:66568994-66569013 Msa0565700:intron 25.0%
!! CTCAACCAGATTTTAAATAA+AGG - chr4_1:66569087-66569106 Msa0565700:intron 25.0%
!! GCAAACCTTTATTTAAAATC+TGG + chr4_1:66569095-66569114 None:intergenic 25.0%
! ATTCTCCGTAATATAAAGAA+CGG - chr4_1:66569208-66569227 Msa0565700:CDS 25.0%
! AGTCTTTCCATTTATTGTAT+AGG - chr4_1:66569277-66569296 Msa0565700:intron 25.0%
! ACTCTTAGACTAATATTTGT+CGG - chr4_1:66569350-66569369 Msa0565700:intron 25.0%
! TACCTTATGTTTATCATATC+TGG - chr4_1:66569452-66569471 Msa0565700:intron 25.0%
!! TTGTTTCTTGCTTCTTAATT+TGG - chr4_1:66569523-66569542 Msa0565700:intron 25.0%
! GTTGTCTAAATATAGTTGTA+AGG - chr4_1:66569673-66569692 Msa0565700:CDS 25.0%
!!! TTGTAAGGTTTTGAATCATT+TGG - chr4_1:66569688-66569707 Msa0565700:CDS 25.0%
! TCTTAGACCATTCTATTTAT+TGG - chr4_1:66569791-66569810 Msa0565700:intron 25.0%
!! TTATTTTCAAACTTGCAGAT+TGG - chr4_1:66569830-66569849 Msa0565700:intron 25.0%
! ATACTATATGTTTCTCTTCA+TGG - chr4_1:66570028-66570047 Msa0565700:intron 25.0%
! TAGAAATTTGCAGAATCATA+AGG + chr4_1:66570331-66570350 None:intergenic 25.0%
! ATAACATGTGATATACCTAA+GGG + chr4_1:66570622-66570641 None:intergenic 25.0%
!! TTCTAACTTTTATCTAAACG+TGG - chr4_1:66570643-66570662 Msa0565700:intron 25.0%
! CATCTTTAAATGACATTTCA+AGG + chr4_1:66570709-66570728 None:intergenic 25.0%
TTGAGACAAAAAGAACGAAA+CGG + chr4_1:66568435-66568454 None:intergenic 30.0%
TGTGACAATATTTATGCAGT+TGG - chr4_1:66568568-66568587 Msa0565700:CDS 30.0%
TTCCTGGAATTTCAATTGTT+TGG - chr4_1:66568678-66568697 Msa0565700:CDS 30.0%
TCCTGGAATTTCAATTGTTT+GGG - chr4_1:66568679-66568698 Msa0565700:CDS 30.0%
TAGTTGAAAAATGGTGAGTT+TGG + chr4_1:66568819-66568838 None:intergenic 30.0%
!! CTCACCATTTTTCAACTATT+TGG - chr4_1:66568821-66568840 Msa0565700:intron 30.0%
! ACTATTTGGCAAAACTTGTT+AGG - chr4_1:66568835-66568854 Msa0565700:intron 30.0%
! AAGTGCCGTTCTTTATATTA+CGG + chr4_1:66569216-66569235 None:intergenic 30.0%
AGACTCATAGATAGTTAGTA+AGG + chr4_1:66569262-66569281 None:intergenic 30.0%
ATTCAATCACAAAAGCTTGA+AGG + chr4_1:66569418-66569437 None:intergenic 30.0%
CTCCAGATATGATAAACATA+AGG + chr4_1:66569457-66569476 None:intergenic 30.0%
AATACGTGTCTAGCAAAATA+TGG - chr4_1:66569596-66569615 Msa0565700:intron 30.0%
ATACGTGTCTAGCAAAATAT+GGG - chr4_1:66569597-66569616 Msa0565700:intron 30.0%
! TTTTGAATGTGATGTTTGCA+GGG - chr4_1:66569888-66569907 Msa0565700:intron 30.0%
CATAACATGTGATATACCTA+AGG + chr4_1:66570623-66570642 None:intergenic 30.0%
TTTATCAAGGATGAAGTAGA+AGG - chr4_1:66570765-66570784 Msa0565700:CDS 30.0%
!! CTTTGAGATGAGAAATACGA+TGG + chr4_1:66568236-66568255 None:intergenic 35.0%
CATCGTATTTCTCATCTCAA+AGG - chr4_1:66568234-66568253 Msa0565700:three_prime_UTR 35.0%
CTGTTAGAGGAACAAGAAAA+TGG + chr4_1:66568287-66568306 None:intergenic 35.0%
! TTTTCTTCCATCACTGTTAG+AGG + chr4_1:66568300-66568319 None:intergenic 35.0%
GAAAATGTTGTAACACTTCC+TGG - chr4_1:66568662-66568681 Msa0565700:CDS 35.0%
CCTGGAATTTCAATTGTTTG+GGG - chr4_1:66568680-66568699 Msa0565700:CDS 35.0%
! CTGTTTCAAGGGAAATCTTT+TGG + chr4_1:66568792-66568811 None:intergenic 35.0%
CAAAAGATTTCCCTTGAAAC+AGG - chr4_1:66568790-66568809 Msa0565700:intron 35.0%
GCTGGTACCTATACAATAAA+TGG + chr4_1:66569287-66569306 None:intergenic 35.0%
GGCAAACATAATCAGTTTGT+AGG - chr4_1:66569371-66569390 Msa0565700:intron 35.0%
GAAGCAAGAAACAAAGCTTT+AGG + chr4_1:66569517-66569536 None:intergenic 35.0%
! CAAAAGTACAGTAGATCCAA+CGG + chr4_1:66569873-66569892 None:intergenic 35.0%
! CTTTTGAATGTGATGTTTGC+AGG - chr4_1:66569887-66569906 Msa0565700:intron 35.0%
! TTACGTAGTTCATCACCTTT+TGG - chr4_1:66569950-66569969 Msa0565700:intron 35.0%
!! ACTTGCTATCTGTTTCCAAA+AGG + chr4_1:66569968-66569987 None:intergenic 35.0%
TTATATGACAGACCAATCAC+AGG - chr4_1:66570364-66570383 Msa0565700:CDS 35.0%
! ATGAATCCAGCAAGAAGTAT+AGG - chr4_1:66570394-66570413 Msa0565700:CDS 35.0%
TATTCACTGTGTAGAAAAGC+AGG + chr4_1:66570421-66570440 None:intergenic 35.0%
TTTCTACACAGTGAATACAG+AGG - chr4_1:66570424-66570443 Msa0565700:CDS 35.0%
ACAGTGAATACAGAGGAATA+TGG - chr4_1:66570431-66570450 Msa0565700:CDS 35.0%
CAGAGGAATATGGATATACT+TGG - chr4_1:66570441-66570460 Msa0565700:CDS 35.0%
CATGGGTTTATAACGTCATT+CGG - chr4_1:66570494-66570513 Msa0565700:CDS 35.0%
TTATAACGTCATTCGGTACA+CGG - chr4_1:66570501-66570520 Msa0565700:intron 35.0%
!! TTTTAGGAAAGATGAGCTCT+TGG + chr4_1:66570548-66570567 None:intergenic 35.0%
CTAAAAGCAGCAAAACCATA+GGG - chr4_1:66570562-66570581 Msa0565700:intron 35.0%
!! AGCATGTTTGATTTTCCCTT+AGG - chr4_1:66570604-66570623 Msa0565700:intron 35.0%
!! AAAGCATATTGATTTCCCCT+TGG + chr4_1:66570675-66570694 None:intergenic 35.0%
TCTTGTTCCTCTAACAGTGA+TGG - chr4_1:66568290-66568309 Msa0565700:three_prime_UTR 40.0%
!! ATTTATGCAGTTGGTAGCTG+AGG - chr4_1:66568577-66568596 Msa0565700:CDS 40.0%
CCCCAAACAATTGAAATTCC+AGG + chr4_1:66568683-66568702 None:intergenic 40.0%
!! TTTGGTGCTAGCAAAAGCAA+TGG + chr4_1:66568774-66568793 None:intergenic 40.0%
AGTTTGGTCACCTGTTTCAA+GGG + chr4_1:66568803-66568822 None:intergenic 40.0%
TTATGTCGCTACCTAGATCA+CGG + chr4_1:66569120-66569139 None:intergenic 40.0%
CTGCAACATAACTGCAATTG+AGG - chr4_1:66569161-66569180 Msa0565700:intron 40.0%
TATGTAGCAGCTCAAGTCTT+TGG - chr4_1:66569308-66569327 Msa0565700:intron 40.0%
AGTTGCCACTGATAATAGAG+CGG - chr4_1:66569475-66569494 Msa0565700:intron 40.0%
GTGTCTAGCAAAATATGGGT+TGG - chr4_1:66569601-66569620 Msa0565700:intron 40.0%
AAACTTGCAGATTGGTGAGT+TGG - chr4_1:66569838-66569857 Msa0565700:intron 40.0%
TTCATTGATGCTCCTGTGAT+TGG + chr4_1:66570379-66570398 None:intergenic 40.0%
!! TACTTGGTGTCTCCTATTCT+TGG - chr4_1:66570457-66570476 Msa0565700:CDS 40.0%
!!! CCTATGGTTTTGCTGCTTTT+AGG + chr4_1:66570564-66570583 None:intergenic 40.0%
CCTAAAAGCAGCAAAACCAT+AGG - chr4_1:66570561-66570580 Msa0565700:intron 40.0%
TCTAAACGTGGATACTTCCA+AGG - chr4_1:66570655-66570674 Msa0565700:intron 40.0%
CTAAACGTGGATACTTCCAA+GGG - chr4_1:66570656-66570675 Msa0565700:intron 40.0%
TAAACGTGGATACTTCCAAG+GGG - chr4_1:66570657-66570676 Msa0565700:intron 40.0%
CTTCTGCAAGAAAGAAGCAG+TGG + chr4_1:66568406-66568425 None:intergenic 45.0%
CACTGCTTCTTTCTTGCAGA+AGG - chr4_1:66568404-66568423 Msa0565700:three_prime_UTR 45.0%
!! ATGGTGCTGGTTTACTCTCT+TGG - chr4_1:66568713-66568732 Msa0565700:intron 45.0%
TACTCTCTTGGTCACATCTC+TGG - chr4_1:66568725-66568744 Msa0565700:intron 45.0%
GCAAAAGCAATGGTAACTGC+AGG + chr4_1:66568764-66568783 None:intergenic 45.0%
GAGTTTGGTCACCTGTTTCA+AGG + chr4_1:66568804-66568823 None:intergenic 45.0%
ACTTGAGCTGCTACATAAGC+TGG + chr4_1:66569305-66569324 None:intergenic 45.0%
TTTGGATCCACACTTGCAAG+TGG - chr4_1:66569326-66569345 Msa0565700:intron 45.0%
AAGAGTTCCACTTGCAAGTG+TGG + chr4_1:66569336-66569355 None:intergenic 45.0%
TTTGTAGGAACACTTCCAGC+TGG - chr4_1:66569386-66569405 Msa0565700:intron 45.0%
TTGTAGGAACACTTCCAGCT+GGG - chr4_1:66569387-66569406 Msa0565700:intron 45.0%
CGTTACCGCTCTATTATCAG+TGG + chr4_1:66569483-66569502 None:intergenic 45.0%
! CAAAACCATAGGGCTGACTT+TGG - chr4_1:66570572-66570591 Msa0565700:intron 45.0%
ATCAACCAAAGTCAGCCCTA+TGG + chr4_1:66570580-66570599 None:intergenic 45.0%
GAAAGAAGCAGTGGCATGAG+AGG + chr4_1:66568397-66568416 None:intergenic 50.0%
!! CAGTTGGTAGCTGAGGTGAT+AGG - chr4_1:66568584-66568603 Msa0565700:CDS 50.0%
! TGCTGGTTGTGCTTCAGTGT+TGG - chr4_1:66568625-66568644 Msa0565700:CDS 50.0%
!! TGTTTGGGGACTTGCTGTGA+TGG - chr4_1:66568694-66568713 Msa0565700:CDS 50.0%
AAGGTTTGCGACCGTGATCT+AGG - chr4_1:66569106-66569125 Msa0565700:intron 50.0%
! TTGCAGATTGGTGAGTTGGC+TGG - chr4_1:66569842-66569861 Msa0565700:intron 50.0%
! TGCAGATTGGTGAGTTGGCT+GGG - chr4_1:66569843-66569862 Msa0565700:intron 50.0%
GCAGGTCCTATACTTCTTGC+TGG + chr4_1:66570403-66570422 None:intergenic 50.0%
GTCTCCTATTCTTGGAGCTG+TGG - chr4_1:66570465-66570484 Msa0565700:CDS 50.0%
CATTCGGTACACGGATAAGC+CGG - chr4_1:66570510-66570529 Msa0565700:intron 50.0%
CCAGCCACAGCTCCAAGAAT+AGG + chr4_1:66570472-66570491 None:intergenic 55.0%
CCTATTCTTGGAGCTGTGGC+TGG - chr4_1:66570469-66570488 Msa0565700:CDS 55.0%
! CTCTTGGTGATCTCGCGAAC+CGG + chr4_1:66570532-66570551 None:intergenic 55.0%
!! GGGACTTGCTGTGATGGTGC+TGG - chr4_1:66568700-66568719 Msa0565700:CDS 60.0%
GCTTGAAGGTCAGACCCAGC+TGG + chr4_1:66569404-66569423 None:intergenic 60.0%
GAGTTGGCTGGGATTGCCGT+TGG - chr4_1:66569854-66569873 Msa0565700:intron 60.0%
TTGGAGCTGTGGCTGGTGCA+TGG - chr4_1:66570476-66570495 Msa0565700:CDS 60.0%
TGGAGCTGTGGCTGGTGCAT+GGG - chr4_1:66570477-66570496 Msa0565700:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 66568226 66570879 66568226 ID=Msa0565700;Name=Msa0565700
chr4_1 mRNA 66568226 66570879 66568226 ID=Msa0565700-mRNA-1;Parent=Msa0565700;Name=Msa0565700-mRNA-1;_AED=0.29;_eAED=0.29;_QI=83|0.75|0.6|1|1|1|5|297|269
chr4_1 exon 66568226 66568730 66568226 ID=Msa0565700-mRNA-1:exon:21674;Parent=Msa0565700-mRNA-1
chr4_1 exon 66569196 66569257 66569196 ID=Msa0565700-mRNA-1:exon:21673;Parent=Msa0565700-mRNA-1
chr4_1 exon 66569609 66569806 66569609 ID=Msa0565700-mRNA-1:exon:21672;Parent=Msa0565700-mRNA-1
chr4_1 exon 66570294 66570518 66570294 ID=Msa0565700-mRNA-1:exon:21671;Parent=Msa0565700-mRNA-1
chr4_1 exon 66570680 66570879 66570680 ID=Msa0565700-mRNA-1:exon:21670;Parent=Msa0565700-mRNA-1
chr4_1 five_prime_UTR 66570797 66570879 66570797 ID=Msa0565700-mRNA-1:five_prime_utr;Parent=Msa0565700-mRNA-1
chr4_1 CDS 66570680 66570796 66570680 ID=Msa0565700-mRNA-1:cds;Parent=Msa0565700-mRNA-1
chr4_1 CDS 66570294 66570518 66570294 ID=Msa0565700-mRNA-1:cds;Parent=Msa0565700-mRNA-1
chr4_1 CDS 66569609 66569806 66569609 ID=Msa0565700-mRNA-1:cds;Parent=Msa0565700-mRNA-1
chr4_1 CDS 66569196 66569257 66569196 ID=Msa0565700-mRNA-1:cds;Parent=Msa0565700-mRNA-1
chr4_1 CDS 66568523 66568730 66568523 ID=Msa0565700-mRNA-1:cds;Parent=Msa0565700-mRNA-1
chr4_1 three_prime_UTR 66568226 66568522 66568226 ID=Msa0565700-mRNA-1:three_prime_utr;Parent=Msa0565700-mRNA-1
Gene Sequence

>Msa0565700

ATGGAAGAAAATTCAGCTAGCAATGCAACCAATGAGATTGTTTTAAACGTAAACAAGGCTGTCTCTAACACAAGTGAAGACTCAACCTCTCATGCCACTGCTTCTTTCTTGCAGAAGTTGGTAGCTGAGGTGATAGGCACATATTTCTTGATATTTGCTGGTTGTGCTTCAGTGTTGGTGAACAAGAACAATGAAAATGTTGTAACACTTCCTGGAATTTCAATTGTTTGGGGACTTGCTGTGATGGTGCTGGTTTACTCTCTTGGTCACATCTCTGGTGCTCATTTCAATCCTGCAGTTACCATTGCTTTTGCTAGCACCAAAAGATTTCCCTTGAAACAGGTACCAGCTTATGTAGCAGCTCAAGTCTTTGGATCCACACTTGCAAGTGGAACTCTTAGACTAATATTTGTCGGCAAACATAATCAGTTTGTAGGAACACTTCCAGCTGGGTCTGACCTTCAAGCTTTTGTGATTGAATTCATCATCACTTTTTACCTTATGTTTATCATATCTGGAGTTGCCACTGATAATAGAGCGATTGGTGAGTTGGCTGGGATTGCCGTTGGATCTACTGTACTTTTGAATGTGATGTTTGCAGGACCAATCACAGGAGCATCAATGAATCCAGCAAGAAGTATAGGACCTGCTTTTCTACACAGTGAATACAGAGGAATATGGATATACTTGGTGTCTCCTATTCTTGGAGCTGTGGCTGGTGCATGGGTTTATAACGTCATTCGGTACACGGATAAGCCGGTTCGCGAGATCACCAAGAGCTCATCTTTCCTAAAAGCAGCAAAACCATAG

Protein sequence

>Msa0565700

MEENSASNATNEIVLNVNKAVSNTSEDSTSHATASFLQKLVAEVIGTYFLIFAGCASVLVNKNNENVVTLPGISIVWGLAVMVLVYSLGHISGAHFNPAVTIAFASTKRFPLKQVPAYVAAQVFGSTLASGTLRLIFVGKHNQFVGTLPAGSDLQAFVIEFIITFYLMFIISGVATDNRAIGELAGIAVGSTVLLNVMFAGPITGASMNPARSIGPAFLHSEYRGIWIYLVSPILGAVAGAWVYNVIRYTDKPVREITKSSSFLKAAKP*