AlfalfaGEDB | Msa0831890

M. sativa cultivar zhongmu-4 / Msa0831890

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016614 GO:0016899 GO:0019752 GO:0019852 GO:0019853 GO:0030312 GO:0036094 GO:0042364 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044464 GO:0046364 GO:0046394 GO:0048037 GO:0050105 GO:0050660 GO:0050662 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:0071944 GO:0097159 GO:1901265 GO:1901363 GO:1901576
PFAM: PF01565.26

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0831890	XP_003610656.3	95.164	579	27	1	1	578	9	587	0.0	1121

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0831890	sp\|O81032\|GGLO6_ARATH	63.937	574	201	3	6	573	16	589	0.0	781

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0831890	A0A396HPJ0	95.164	579	27	1	1	578	9	587	0.0	1121

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000370	Msa0831890	0.802325	5.919758e-49	-8.615850e-47
Msa0006080	Msa0831890	0.826518	2.595716e-54	-8.615850e-47
Msa0009530	Msa0831890	-0.813980	1.944360e-51	-8.615850e-47
Msa0009560	Msa0831890	-0.804825	1.793819e-49	-8.615850e-47
Msa0010150	Msa0831890	0.848722	5.112633e-60	-8.615850e-47
Msa0011010	Msa0831890	0.813712	2.227728e-51	-8.615850e-47
Msa0011040	Msa0831890	0.827201	1.782580e-54	-8.615850e-47
Msa0011060	Msa0831890	-0.818440	1.958378e-52	-8.615850e-47
Msa0011100	Msa0831890	-0.811498	6.794881e-51	-8.615850e-47
Msa0013040	Msa0831890	0.815344	9.700177e-52	-8.615850e-47

Showing 1 to 10 of 838 entries

Previous1 2 3 4 5…84Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0831890	MtrunA17_Chr5g0394031	95.164	579	27	1	1	578	9	587	0.0	1121
Msa0831890	MtrunA17_Chr8g0346061	67.077	568	184	3	9	573	12	579	0.0	807
Msa0831890	MtrunA17_Chr1g0157561	45.892	353	187	2	222	574	19	367	3.84e-110	334
Msa0831890	MtrunA17_Chr7g0276181	82.734	139	24	0	439	577	16	154	1.11e-73	232
Msa0831890	MtrunA17_Chr7g0276161	77.941	136	27	1	6	138	11	146	7.66e-68	216
Msa0831890	MtrunA17_Chr1g0157571	50.000	206	96	4	22	223	30	232	2.14e-57	192
Msa0831890	MtrunA17_Chr8g0346031	50.000	154	44	4	154	306	12	133	7.32e-39	139
Msa0831890	MtrunA17_Chr1g0157541	48.872	133	66	1	359	491	3	133	2.21e-38	137
Msa0831890	MtrunA17_Chr8g0346041	77.083	48	11	0	444	491	3	50	1.07e-24	97.1
Msa0831890	MtrunA17_Chr7g0276171	69.492	59	18	0	357	415	1	59	8.42e-21	86.3

Showing 1 to 10 of 12 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0831890	AT2G46760.1	63.937	574	201	3	6	573	16	589	0.0	781
Msa0831890	AT2G46740.1	62.610	567	209	2	10	573	19	585	0.0	771
Msa0831890	AT2G46750.1	62.347	571	211	3	10	576	15	585	0.0	767
Msa0831890	AT1G32300.1	60.490	572	221	4	6	573	3	573	0.0	722
Msa0831890	AT5G56490.1	59.436	567	225	4	11	573	7	572	0.0	714
Msa0831890	AT5G11540.1	46.794	577	295	7	4	575	8	577	2.09e-179	519
Msa0831890	AT5G56470.1	65.517	232	79	1	345	575	18	249	9.17e-108	324

Showing 1 to 7 of 7 entries

Previous1Next

Find 125 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATGGATGTGCATTGGA+AGG	0.509773	5_4:-4955579	Msa0831890:CDS
AAAGTTGACCACTGAAACAT+TGG	0.447525	5_4:-4957306	Msa0831890:CDS
AAATAGAAATGTAGGATTTG+TGG	0.469318	5_4:-4955730	Msa0831890:CDS
AAATGAGCACAGCTTGTATA+GGG	0.346844	5_4:-4956076	Msa0831890:CDS
AACAACCGAATACAATCATC+AGG	0.432752	5_4:-4956125	Msa0831890:CDS
AAGAACCCCTAAAGAAATTC+TGG	0.393239	5_4:+4959005	None:intergenic
AAGAACTACTTCTGCAGACC+AGG	0.530862	5_4:-4955516	Msa0831890:CDS
AAGATGGATGTGCATTGGAA+GGG	0.602495	5_4:-4955578	Msa0831890:CDS
AAGCATTTGCAGAGCTAGCA+AGG	0.561569	5_4:-4959484	Msa0831890:CDS
AATAGAAATGTAGGATTTGT+GGG	0.373649	5_4:-4955729	Msa0831890:CDS

Showing 1 to 10 of 125 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATTAGTAGTCCATTATCATC+AGG	+	chr5_4:4955758-4955777	None:intergenic	30.0%
TGTCAAATTGTTGAGAATGA+CGG	-	chr5_4:4955814-4955833	Msa0831890:CDS	30.0%
ATTGAGAGAGATCATTAATG+AGG	-	chr5_4:4955853-4955872	Msa0831890:CDS	30.0%
AAGTCTAGTAGTAAAAACAG+TGG	-	chr5_4:4956362-4956381	Msa0831890:intron	30.0%
CGGATCTTGAGTTAAAATAT+TGG	-	chr5_4:4956385-4956404	Msa0831890:intron	30.0%
TTAAAAAAGAACGTGCATGA+GGG	+	chr5_4:4956534-4956553	None:intergenic	30.0%
ATTAAAAAAGAACGTGCATG+AGG	+	chr5_4:4956535-4956554	None:intergenic	30.0%
ACTATATAAGGAAATACTGG+GGG	-	chr5_4:4956657-4956676	Msa0831890:intron	30.0%
TTTATAGGTTACCCTACAAT+TGG	-	chr5_4:4956953-4956972	Msa0831890:intron	30.0%
ATTTGGATACCATGTTACAT+CGG	+	chr5_4:4957072-4957091	None:intergenic	30.0%

Showing 1 to 10 of 235 entries

Previous1 2 3 4 5…24Next

Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	4955467	4959655	4955467	ID=Msa0831890;Name=Msa0831890
chr5_4	mRNA	4955467	4959655	4955467	ID=Msa0831890-mRNA-1;Parent=Msa0831890;Name=Msa0831890-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|0\|0\|1\|1\|1\|4\|0\|579
chr5_4	exon	4958990	4959655	4958990	ID=Msa0831890-mRNA-1:exon:2071;Parent=Msa0831890-mRNA-1
chr5_4	exon	4957907	4958162	4957907	ID=Msa0831890-mRNA-1:exon:2070;Parent=Msa0831890-mRNA-1
chr5_4	exon	4957273	4957377	4957273	ID=Msa0831890-mRNA-1:exon:2069;Parent=Msa0831890-mRNA-1
chr5_4	exon	4955467	4956179	4955467	ID=Msa0831890-mRNA-1:exon:2068;Parent=Msa0831890-mRNA-1
chr5_4	CDS	4958990	4959655	4958990	ID=Msa0831890-mRNA-1:cds;Parent=Msa0831890-mRNA-1
chr5_4	CDS	4957907	4958162	4957907	ID=Msa0831890-mRNA-1:cds;Parent=Msa0831890-mRNA-1
chr5_4	CDS	4957273	4957377	4957273	ID=Msa0831890-mRNA-1:cds;Parent=Msa0831890-mRNA-1
chr5_4	CDS	4955467	4956179	4955467	ID=Msa0831890-mRNA-1:cds;Parent=Msa0831890-mRNA-1

Gene Sequence

>Msa0831890

ATGAGAGAACAAGAATTCAAGTCCACTCTTTTTATCTTTCTATTTATAATATATGGAGTAATTTCAACTCCTCCAGCAGATCCAATTCAGTGTTCATCAAATAATACAAACTGCACCATCACAAATTCATATGGCGTGTTCCCCGATCGAAGCATTTGCAGAGCTAGCAAGGTTATGTATCCAACCACAGAGGCGGAGCTCATATCAATAGTCGCGTTAGCTTCAAAAAACAACAGAAAAATGAAAGTTGCAACGCGCTTCTCTCACAGCATACCAAAGCTAGCTTGTCCTGATGATAATGGACTACTAATAAGCACAAAAAATCTGAACCGTGTGTTGAAAATCGATGTCAAATTGTTGAGAATGACGGTAGAGAGCGGTGTAACATTGAGAGAGATCATTAATGAGGCTGCAAGGTTTGAAATGGCTCTGCCAAATACACCATATTGGTGGGGTTTAACCATTGGTGGCCTAATTAGCACTGGTGCTCATGGAAGTACATTGTGGGGTAAAGGAAGTGCCGTGCATGAGTATGTAACACATATTAGAATAGTTAGCCCTGCAGAATGTGAAGATGGATATGCTAAGGTTAGAAATCTTAATGAATCTCACCAAGATCTTAATGCAGCCAGAATTTCTTTAGGGGTTCTTGGAGTTATTTCTCAGGTTACCCTACAATTGGAACCCCTCTTCAAGCGATCTCTTACATATTTGACAAAAAATGATTCTGATTTGGGTGATGAATTGATTACTTTTGGCAACAAGCATGAATTTGCCGATGTAACATGGTATCCAAATCAACAAAAGGCTCTTTATAGAATTGATGATCGTGTCTCTGTAAATACATTTGGAAATGGTTTATATGATTCCATTGGACTTCGCTCAACACCTTCGGCCACATTAACACTTGCTAGAACTACAGAGGAGCTTCAAGAAGCAACACACGATACTAACGGAAAGTGCATTAGTGCAAAGTTGACCACTGAAACATTGGCAGGCATTGCTTATGGATTGTCTAATAACAATGGAACATTTATTGGATACCCCGTTGTTGGATTCAACAACCGAATACAATCATCAGGGACATGTTTGGATAGTTTGGATGATCAAATGAGCACAGCTTGTATAGGGGACTCAAGAATTAAGGGACCATTCAATTACGATACAGCATTTAGTATTCCCTTAACTACTGTAAAATACTTCATTGAAGATGTTAAAAAGCTTGTTCAGTTGGAGCCAAAGGCACTGTGTGGCTTAGAATTGTACAATGGAATTCTCATGCGTTATGTTACAACTTCTAGGGCATACTTGGGAAAAACAGAAGATGCTGTGGAATTTGATATCATATATTACCGCAGTAAAGATCCATTGACTCCTAGGCTTTATGAAGATATAATTGAAGAGATAGAACAAATAGGGTTGTTCAAATATGGAGGGTTACCCCATTGGGGAAAAAATAGAAATGTAGGATTTGTGGGGGCAATAAAAAAATATAATAAGGCAAATAGGTTTTTGAAGGTTAAAAAGAAATATGATCCGAAGAGACTTTTCTCTAGTGATTGGACAGACCAAGTGCTTGGACTTAAAAAAGGAGTGACAATATTAAAAGATGGATGTGCATTGGAAGGGTTGTGTATATGCTCACAAGATAGTCATTGTGCACCAAAAAAGAACTACTTCTGCAGACCAGGCAGAATCTATAAGGATGCAAGGGTTTGTAGGCTTGATGTTAAGAACTAA

Protein sequence

>Msa0831890

MREQEFKSTLFIFLFIIYGVISTPPADPIQCSSNNTNCTITNSYGVFPDRSICRASKVMYPTTEAELISIVALASKNNRKMKVATRFSHSIPKLACPDDNGLLISTKNLNRVLKIDVKLLRMTVESGVTLREIINEAARFEMALPNTPYWWGLTIGGLISTGAHGSTLWGKGSAVHEYVTHIRIVSPAECEDGYAKVRNLNESHQDLNAARISLGVLGVISQVTLQLEPLFKRSLTYLTKNDSDLGDELITFGNKHEFADVTWYPNQQKALYRIDDRVSVNTFGNGLYDSIGLRSTPSATLTLARTTEELQEATHDTNGKCISAKLTTETLAGIAYGLSNNNGTFIGYPVVGFNNRIQSSGTCLDSLDDQMSTACIGDSRIKGPFNYDTAFSIPLTTVKYFIEDVKKLVQLEPKALCGLELYNGILMRYVTTSRAYLGKTEDAVEFDIIYYRSKDPLTPRLYEDIIEEIEQIGLFKYGGLPHWGKNRNVGFVGAIKKYNKANRFLKVKKKYDPKRLFSSDWTDQVLGLKKGVTILKDGCALEGLCICSQDSHCAPKKNYFCRPGRIYKDARVCRLDVKN*