Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0634450 | XP_004511051.1 | 97.895 | 190 | 3 | 1 | 24 | 213 | 4 | 192 | 1.18e-133 | 383 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0634450 | sp|Q9ZVJ4|CYP22_ARATH | 87.368 | 190 | 24 | 0 | 24 | 213 | 10 | 199 | 1.35e-123 | 350 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0634450 | A0A1S2YWJ8 | 97.895 | 190 | 3 | 1 | 24 | 213 | 4 | 192 | 5.63e-134 | 383 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0108550 | Msa0634450 | 0.807533 | 4.825923e-50 | -8.615850e-47 |
Msa0610390 | Msa0634450 | 0.823961 | 1.044725e-53 | -8.615850e-47 |
Msa0634450 | Msa0650920 | 0.821875 | 3.198920e-53 | -8.615850e-47 |
Msa0634450 | Msa0687630 | 0.800626 | 1.319388e-48 | -8.615850e-47 |
Msa0634450 | Msa0692940 | 0.815535 | 8.798015e-52 | -8.615850e-47 |
Msa0634450 | Msa1166870 | 0.804459 | 2.138494e-49 | -8.615850e-47 |
Msa0634450 | Msa1186800 | 0.919521 | 4.056832e-87 | -8.615850e-47 |
Msa0634450 | Msa1282480 | 0.831914 | 1.273992e-55 | -8.615850e-47 |
Msa0280430 | Msa0634450 | 0.805166 | 1.522094e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0634450 | MtrunA17_Chr8g0353571 | 99.454 | 183 | 1 | 0 | 31 | 213 | 3 | 185 | 2.13e-136 | 379 |
Msa0634450 | MtrunA17_Chr4g0038431 | 58.480 | 171 | 67 | 3 | 45 | 213 | 3 | 171 | 1.61e-66 | 202 |
Msa0634450 | MtrunA17_Chr7g0274841 | 59.064 | 171 | 66 | 3 | 45 | 213 | 3 | 171 | 1.38e-65 | 200 |
Msa0634450 | MtrunA17_Chr3g0145501 | 58.333 | 168 | 66 | 3 | 48 | 213 | 14 | 179 | 2.88e-64 | 197 |
Msa0634450 | MtrunA17_Chr1g0193711 | 57.485 | 167 | 64 | 3 | 48 | 213 | 87 | 247 | 3.82e-61 | 191 |
Msa0634450 | MtrunA17_Chr7g0270991 | 56.364 | 165 | 66 | 2 | 49 | 213 | 99 | 257 | 4.33e-61 | 191 |
Msa0634450 | MtrunA17_Chr3g0104751 | 56.548 | 168 | 69 | 3 | 48 | 213 | 36 | 201 | 1.31e-59 | 186 |
Msa0634450 | MtrunA17_Chr3g0113441 | 56.548 | 168 | 69 | 3 | 48 | 213 | 66 | 231 | 4.92e-59 | 185 |
Msa0634450 | MtrunA17_Chr8g0374621 | 55.814 | 172 | 72 | 2 | 45 | 213 | 3 | 173 | 9.36e-59 | 188 |
Msa0634450 | MtrunA17_Chr1g0213971 | 55.621 | 169 | 66 | 3 | 48 | 213 | 79 | 241 | 6.79e-58 | 182 |
Msa0634450 | MtrunA17_Chr4g0045321 | 54.762 | 168 | 72 | 2 | 49 | 213 | 7 | 173 | 1.63e-57 | 185 |
Msa0634450 | MtrunA17_Chr7g0260441 | 53.757 | 173 | 75 | 3 | 44 | 213 | 5 | 175 | 7.83e-55 | 184 |
Msa0634450 | MtrunA17_Chr4g0037281 | 47.337 | 169 | 85 | 3 | 48 | 213 | 48 | 215 | 1.25e-46 | 153 |
Msa0634450 | MtrunA17_Chr3g0138061 | 46.512 | 172 | 87 | 3 | 44 | 212 | 8 | 177 | 7.46e-40 | 144 |
Msa0634450 | MtrunA17_Chr7g0266721 | 47.552 | 143 | 64 | 4 | 60 | 201 | 19 | 151 | 2.31e-37 | 127 |
Msa0634450 | MtrunA17_Chr2g0321111 | 48.322 | 149 | 66 | 4 | 54 | 201 | 465 | 603 | 6.48e-35 | 130 |
Msa0634450 | MtrunA17_Chr1g0149061 | 42.442 | 172 | 93 | 4 | 44 | 212 | 5 | 173 | 1.04e-33 | 127 |
Msa0634450 | MtrunA17_Chr8g0351571 | 48.951 | 143 | 62 | 4 | 60 | 201 | 10 | 142 | 5.88e-33 | 116 |
Msa0634450 | MtrunA17_Chr5g0401141 | 45.455 | 143 | 67 | 4 | 60 | 201 | 354 | 486 | 1.02e-27 | 109 |
Msa0634450 | MtrunA17_Chr2g0288371 | 44.444 | 144 | 69 | 4 | 60 | 201 | 22 | 156 | 1.31e-27 | 108 |
Msa0634450 | MtrunA17_Chr6g0484281 | 33.775 | 151 | 81 | 5 | 60 | 201 | 10 | 150 | 2.91e-16 | 76.6 |
Msa0634450 | MtrunA17_Chr8g0357591 | 33.113 | 151 | 82 | 5 | 60 | 201 | 10 | 150 | 5.93e-15 | 72.8 |
Msa0634450 | MtrunA17_Chr3g0122871 | 61.111 | 54 | 20 | 1 | 138 | 191 | 57 | 109 | 1.27e-14 | 67.8 |
Msa0634450 | MtrunA17_Chr1g0199071 | 33.333 | 156 | 87 | 7 | 56 | 210 | 85 | 224 | 4.81e-13 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0634450 | AT2G38730.1 | 87.368 | 190 | 24 | 0 | 24 | 213 | 10 | 199 | 1.38e-124 | 350 |
Msa0634450 | AT3G62030.1 | 50.237 | 211 | 86 | 4 | 3 | 213 | 65 | 256 | 1.04e-67 | 209 |
Msa0634450 | AT3G62030.3 | 50.237 | 211 | 85 | 4 | 3 | 213 | 65 | 255 | 1.57e-67 | 208 |
Msa0634450 | AT2G21130.1 | 59.064 | 171 | 66 | 3 | 45 | 213 | 4 | 172 | 1.95e-67 | 205 |
Msa0634450 | AT3G62030.2 | 50.000 | 212 | 87 | 4 | 2 | 213 | 117 | 309 | 2.10e-66 | 207 |
Msa0634450 | AT3G56070.1 | 59.064 | 171 | 66 | 3 | 45 | 213 | 3 | 171 | 3.79e-66 | 202 |
Msa0634450 | AT3G56070.2 | 59.064 | 171 | 66 | 3 | 45 | 213 | 3 | 171 | 3.79e-66 | 202 |
Msa0634450 | AT2G16600.1 | 59.064 | 171 | 66 | 3 | 45 | 213 | 4 | 172 | 6.01e-65 | 198 |
Msa0634450 | AT4G38740.1 | 57.059 | 170 | 69 | 3 | 46 | 213 | 4 | 171 | 1.26e-63 | 195 |
Msa0634450 | AT4G34870.1 | 56.725 | 171 | 70 | 3 | 45 | 213 | 3 | 171 | 2.13e-61 | 189 |
Msa0634450 | AT3G55920.1 | 57.396 | 169 | 66 | 4 | 48 | 213 | 61 | 226 | 9.19e-60 | 187 |
Msa0634450 | AT2G29960.1 | 56.805 | 169 | 67 | 4 | 48 | 213 | 34 | 199 | 7.37e-59 | 184 |
Msa0634450 | AT2G29960.3 | 56.805 | 169 | 67 | 4 | 48 | 213 | 34 | 199 | 7.37e-59 | 184 |
Msa0634450 | AT5G13120.2 | 53.846 | 169 | 69 | 3 | 48 | 213 | 88 | 250 | 1.94e-58 | 185 |
Msa0634450 | AT5G13120.1 | 53.846 | 169 | 69 | 3 | 48 | 213 | 92 | 254 | 2.03e-58 | 185 |
Msa0634450 | AT2G15790.1 | 57.738 | 168 | 67 | 2 | 49 | 213 | 7 | 173 | 4.15e-58 | 187 |
Msa0634450 | AT3G63400.2 | 55.233 | 172 | 72 | 3 | 44 | 212 | 5 | 174 | 1.84e-57 | 186 |
Msa0634450 | AT3G63400.3 | 54.913 | 173 | 73 | 3 | 44 | 213 | 5 | 175 | 9.10e-56 | 186 |
Msa0634450 | AT3G63400.4 | 54.913 | 173 | 73 | 3 | 44 | 213 | 5 | 175 | 9.10e-56 | 186 |
Msa0634450 | AT3G63400.1 | 54.913 | 173 | 73 | 3 | 44 | 213 | 5 | 175 | 9.10e-56 | 186 |
Msa0634450 | AT5G58710.1 | 53.571 | 168 | 74 | 3 | 48 | 213 | 37 | 202 | 3.93e-55 | 174 |
Msa0634450 | AT2G16600.2 | 52.663 | 169 | 58 | 4 | 45 | 213 | 4 | 150 | 7.90e-52 | 164 |
Msa0634450 | AT2G29960.2 | 52.071 | 169 | 65 | 5 | 48 | 213 | 34 | 189 | 1.21e-49 | 160 |
Msa0634450 | AT4G34960.1 | 47.619 | 168 | 85 | 2 | 48 | 213 | 49 | 215 | 1.32e-48 | 159 |
Msa0634450 | AT4G34960.2 | 51.220 | 123 | 58 | 1 | 48 | 168 | 49 | 171 | 3.39e-39 | 133 |
Msa0634450 | AT3G44600.1 | 49.664 | 149 | 64 | 4 | 54 | 201 | 479 | 617 | 9.15e-36 | 133 |
Msa0634450 | AT1G01940.1 | 50.350 | 143 | 60 | 4 | 60 | 201 | 10 | 142 | 4.33e-35 | 122 |
Msa0634450 | AT3G22920.1 | 44.828 | 174 | 82 | 7 | 45 | 213 | 3 | 167 | 4.25e-34 | 122 |
Msa0634450 | AT4G32420.1 | 42.442 | 172 | 94 | 3 | 44 | 212 | 5 | 174 | 1.26e-33 | 127 |
Msa0634450 | AT4G32420.5 | 42.442 | 172 | 94 | 3 | 44 | 212 | 5 | 174 | 1.26e-33 | 127 |
Msa0634450 | AT4G32420.3 | 42.442 | 172 | 94 | 3 | 44 | 212 | 5 | 174 | 1.26e-33 | 127 |
Msa0634450 | AT4G32420.6 | 42.442 | 172 | 94 | 3 | 44 | 212 | 5 | 174 | 1.26e-33 | 127 |
Msa0634450 | AT2G36130.1 | 45.455 | 143 | 67 | 4 | 60 | 201 | 19 | 151 | 2.60e-33 | 117 |
Msa0634450 | AT4G32420.4 | 44.156 | 154 | 82 | 2 | 44 | 194 | 5 | 157 | 1.61e-31 | 121 |
Msa0634450 | AT5G67530.1 | 42.442 | 172 | 82 | 6 | 42 | 211 | 339 | 495 | 1.60e-28 | 112 |
Msa0634450 | AT4G33060.1 | 42.000 | 150 | 76 | 4 | 54 | 201 | 16 | 156 | 1.62e-28 | 112 |
Msa0634450 | AT1G53720.2 | 35.762 | 151 | 78 | 5 | 60 | 201 | 10 | 150 | 5.77e-20 | 87.0 |
Msa0634450 | AT1G53720.1 | 35.762 | 151 | 78 | 5 | 60 | 201 | 10 | 150 | 2.77e-19 | 85.9 |
Msa0634450 | AT2G47320.1 | 33.566 | 143 | 82 | 4 | 60 | 202 | 87 | 216 | 1.09e-14 | 70.9 |
Find 60 sgRNAs with CRISPR-Local
Find 31 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATCACAAATGGATGATTT+TGG | 0.153872 | 4_3:+21671482 | None:intergenic |
TCAATTTCATAGAGTGATTA+AGG | 0.210280 | 4_3:-21676619 | Msa0634450:CDS |
GCAATGACACAAGCTAATTT+TGG | 0.220781 | 4_3:+21671729 | None:intergenic |
ACCTGACAACCATTGGTATT+TGG | 0.224731 | 4_3:+21674453 | None:intergenic |
CCAAAACCGCTGAAAATTTC+AGG | 0.235590 | 4_3:-21678479 | Msa0634450:intron |
GCTTCAGTTCAATGTGATTC+TGG | 0.289468 | 4_3:-21671417 | Msa0634450:three_prime_UTR |
TCTAATTGAATAATCGTGTT+TGG | 0.294537 | 4_3:-21671530 | Msa0634450:three_prime_UTR |
TTGATTGAATCCCATAGATA+TGG | 0.295047 | 4_3:-21671641 | Msa0634450:three_prime_UTR |
AGTGGATGTGCTTCCATCTA+TGG | 0.315322 | 4_3:-21674943 | Msa0634450:CDS |
GTAGAGAAAGCCCATATCTA+TGG | 0.317743 | 4_3:+21671630 | None:intergenic |
CTAATTGAATAATCGTGTTT+GGG | 0.335828 | 4_3:-21671529 | Msa0634450:three_prime_UTR |
ACCCGCCGGTAGAATCAAAA+TGG | 0.339305 | 4_3:-21678523 | Msa0634450:CDS |
ATCAAACTTTAGTCCATAGA+TGG | 0.392430 | 4_3:+21674930 | None:intergenic |
TGATGATGAAATTTGTATTC+CGG | 0.393407 | 4_3:-21671465 | Msa0634450:three_prime_UTR |
ACCAAATACCAATGGTTGTC+AGG | 0.403219 | 4_3:-21674454 | Msa0634450:intron |
TGCTTTATGCAGAGAGTGCT+TGG | 0.404187 | 4_3:-21671810 | Msa0634450:intron |
AAGACCAGGTCCAGTGTGTT+TGG | 0.411418 | 4_3:+21674891 | None:intergenic |
GAGCGAGCGATGGCAGGTTC+AGG | 0.416191 | 4_3:-21678630 | Msa0634450:CDS |
ACAAATTTCATCATCACAAA+TGG | 0.420851 | 4_3:+21671472 | None:intergenic |
AGTGCTTGGAGATGGTCTTT+TGG | 0.427613 | 4_3:-21671796 | Msa0634450:CDS |
TAAAATTACCTGACAACCAT+TGG | 0.430990 | 4_3:+21674446 | None:intergenic |
AGGAAAGCAGGTCTTCCTAT+TGG | 0.431006 | 4_3:-21676654 | Msa0634450:CDS |
TTGCAACTGGACCCAATAAC+CGG | 0.433661 | 4_3:-21671752 | Msa0634450:CDS |
AAGATTGAGAATGTTGCAAC+TGG | 0.452890 | 4_3:-21671765 | Msa0634450:CDS |
TGATTGAATCCCATAGATAT+GGG | 0.459937 | 4_3:-21671640 | Msa0634450:three_prime_UTR |
TGACAACCCTTGTAACCAAT+AGG | 0.472137 | 4_3:+21676639 | None:intergenic |
AGGTCTTCCTATTGGTTACA+AGG | 0.483610 | 4_3:-21676646 | Msa0634450:CDS |
CCTTGGCAGGGTGATGGTAG+TGG | 0.487766 | 4_3:-21674961 | Msa0634450:intron |
ATTCTTCCTTGGCAGGGTGA+TGG | 0.505151 | 4_3:-21674967 | Msa0634450:intron |
GCAAGTGAGCGAGCGATGGC+AGG | 0.507741 | 4_3:-21678636 | Msa0634450:CDS |
TAACTTGTGCAAAATGCGAC+TGG | 0.510786 | 4_3:-21674341 | Msa0634450:CDS |
GTGACATCGAAGAAGACGAT+TGG | 0.517924 | 4_3:+21678558 | None:intergenic |
ACTGCCAAACACACTGGACC+TGG | 0.521628 | 4_3:-21674895 | Msa0634450:CDS |
ATGCAGAGAGTGCTTGGAGA+TGG | 0.523668 | 4_3:-21671804 | Msa0634450:intron |
AGATATGGGCTTTCTCTACA+AGG | 0.524038 | 4_3:-21671626 | Msa0634450:three_prime_UTR |
CATACCATTGATAGAAGACC+AGG | 0.531240 | 4_3:+21674877 | None:intergenic |
TGACATCGAAGAAGACGATT+GGG | 0.534415 | 4_3:+21678559 | None:intergenic |
TGGACCTGGTCTTCTATCAA+TGG | 0.534457 | 4_3:-21674881 | Msa0634450:intron |
GTCTTCTTCGATGTCACCAT+CGG | 0.535520 | 4_3:-21678552 | Msa0634450:CDS |
ACTTGGTCTACATATGCATC+CGG | 0.544259 | 4_3:+21671446 | None:intergenic |
CGTTGCAAGTGAGCGAGCGA+TGG | 0.547795 | 4_3:-21678640 | Msa0634450:CDS |
GCAGGTTCAGGTAACGGAGG+AGG | 0.556694 | 4_3:-21678618 | Msa0634450:CDS |
TAGAGAAAGCCCATATCTAT+GGG | 0.559860 | 4_3:+21671631 | None:intergenic |
AATGTGATTCTGGAGAAGTA+TGG | 0.571579 | 4_3:-21671407 | Msa0634450:three_prime_UTR |
TGAACTGAAGCATCTCCACT+TGG | 0.572218 | 4_3:+21671429 | None:intergenic |
TTCAGGTAACGGAGGAGGTG+TGG | 0.574061 | 4_3:-21678613 | Msa0634450:CDS |
TCAGGCTGGTGATTATGTAA+AGG | 0.581630 | 4_3:-21676586 | Msa0634450:intron |
GCGATGGCAGGTTCAGGTAA+CGG | 0.581846 | 4_3:-21678624 | Msa0634450:CDS |
GGTCTTCCTATTGGTTACAA+GGG | 0.599667 | 4_3:-21676645 | Msa0634450:CDS |
GCTTGTGTCATTGCTGAATG+TGG | 0.608601 | 4_3:-21671720 | Msa0634450:CDS |
TCTAATCTGCAGGCAAATAG+CGG | 0.617344 | 4_3:-21674477 | Msa0634450:intron |
TGGAGAAGTATGGAGTTACA+AGG | 0.634326 | 4_3:-21671397 | Msa0634450:three_prime_UTR |
TTTGCAGGCAGTTCTGCACG+GGG | 0.659897 | 4_3:-21677818 | Msa0634450:intron |
AATAGCGGACCAAATACCAA+TGG | 0.664602 | 4_3:-21674462 | Msa0634450:CDS |
ACCATCGGTAATATACCCGC+CGG | 0.666888 | 4_3:-21678537 | Msa0634450:CDS |
GTAACGGAGGAGGTGTGGAG+TGG | 0.669417 | 4_3:-21678608 | Msa0634450:CDS |
ACCGGCGGGTATATTACCGA+TGG | 0.671201 | 4_3:+21678536 | None:intergenic |
GGATGCATATGTAGACCAAG+TGG | 0.682312 | 4_3:-21671444 | Msa0634450:three_prime_UTR |
ATGGCAGGTTCAGGTAACGG+AGG | 0.714308 | 4_3:-21678621 | Msa0634450:CDS |
TTGCAGGCAGTTCTGCACGG+GGG | 0.717888 | 4_3:-21677817 | Msa0634450:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAATACTGATAATTTTGTCA+CGG | - | chr4_3:21678501-21678520 | Msa0634450:CDS | 20.0% |
!!! | TCAATCAATTTTGAGAACTA+TGG | + | chr4_3:21678418-21678437 | None:intergenic | 25.0% |
!! | TCTACAAGGATATTTCTTTT+TGG | - | chr4_3:21678459-21678478 | Msa0634450:intron | 25.0% |
! | TCTAATTGAATAATCGTGTT+TGG | - | chr4_3:21678541-21678560 | Msa0634450:CDS | 25.0% |
! | CTAATTGAATAATCGTGTTT+GGG | - | chr4_3:21678542-21678561 | Msa0634450:CDS | 25.0% |
! | ACAAATTTCATCATCACAAA+TGG | + | chr4_3:21678602-21678621 | None:intergenic | 25.0% |
!! | TGATGATGAAATTTGTATTC+CGG | - | chr4_3:21678606-21678625 | Msa0634450:CDS | 25.0% |
TTGATTGAATCCCATAGATA+TGG | - | chr4_3:21678430-21678449 | Msa0634450:intron | 30.0% | |
TGATTGAATCCCATAGATAT+GGG | - | chr4_3:21678431-21678450 | Msa0634450:intron | 30.0% | |
! | ATGGATGATTTTGGACAAAA+AGG | + | chr4_3:21678583-21678602 | None:intergenic | 30.0% |
! | TCATCACAAATGGATGATTT+TGG | + | chr4_3:21678592-21678611 | None:intergenic | 30.0% |
! | TACAAGGCTAGACATTTTAT+TGG | - | chr4_3:21678690-21678709 | Msa0634450:CDS | 30.0% |
! | ACAAGGCTAGACATTTTATT+GGG | - | chr4_3:21678691-21678710 | Msa0634450:CDS | 30.0% |
! | GCAATGACACAAGCTAATTT+TGG | + | chr4_3:21678345-21678364 | None:intergenic | 35.0% |
TAGAGAAAGCCCATATCTAT+GGG | + | chr4_3:21678443-21678462 | None:intergenic | 35.0% | |
! | AATGTGATTCTGGAGAAGTA+TGG | - | chr4_3:21678664-21678683 | Msa0634450:CDS | 35.0% |
! | CAAGGCTAGACATTTTATTG+GGG | - | chr4_3:21678692-21678711 | Msa0634450:CDS | 35.0% |
!! | GCTAATTTTGGCCGGTTATT+GGG | + | chr4_3:21678333-21678352 | None:intergenic | 40.0% |
!! | AGCTAATTTTGGCCGGTTAT+TGG | + | chr4_3:21678334-21678353 | None:intergenic | 40.0% |
!! | TGACACAAGCTAATTTTGGC+CGG | + | chr4_3:21678341-21678360 | None:intergenic | 40.0% |
GTAGAGAAAGCCCATATCTA+TGG | + | chr4_3:21678444-21678463 | None:intergenic | 40.0% | |
AGATATGGGCTTTCTCTACA+AGG | - | chr4_3:21678445-21678464 | Msa0634450:intron | 40.0% | |
ACTTGGTCTACATATGCATC+CGG | + | chr4_3:21678628-21678647 | None:intergenic | 40.0% | |
GCTTCAGTTCAATGTGATTC+TGG | - | chr4_3:21678654-21678673 | Msa0634450:CDS | 40.0% | |
! | TGGAGAAGTATGGAGTTACA+AGG | - | chr4_3:21678674-21678693 | Msa0634450:CDS | 40.0% |
TTGCAACTGGACCCAATAAC+CGG | - | chr4_3:21678319-21678338 | Msa0634450:intron | 45.0% | |
! | GCTTGTGTCATTGCTGAATG+TGG | - | chr4_3:21678351-21678370 | Msa0634450:intron | 45.0% |
GGATGCATATGTAGACCAAG+TGG | - | chr4_3:21678627-21678646 | Msa0634450:CDS | 45.0% | |
! | TGAACTGAAGCATCTCCACT+TGG | + | chr4_3:21678645-21678664 | None:intergenic | 45.0% |
CGTTGCAAGTGAGCGAGCGA+TGG | - | chr4_3:21671431-21671450 | Msa0634450:three_prime_UTR | 60.0% | |
GCAAGTGAGCGAGCGATGGC+AGG | - | chr4_3:21671435-21671454 | Msa0634450:three_prime_UTR | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_3 | gene | 21671378 | 21678715 | 21671378 | ID=Msa0634450;Name=Msa0634450 |
chr4_3 | mRNA | 21671378 | 21678715 | 21671378 | ID=Msa0634450-mRNA-1;Parent=Msa0634450;Name=Msa0634450-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|1|0.85|1|1|1|7|332|213 |
chr4_3 | exon | 21671378 | 21671820 | 21671378 | ID=Msa0634450-mRNA-1:exon:5605;Parent=Msa0634450-mRNA-1 |
chr4_3 | exon | 21674314 | 21674370 | 21674314 | ID=Msa0634450-mRNA-1:exon:5604;Parent=Msa0634450-mRNA-1 |
chr4_3 | exon | 21674455 | 21674487 | 21674455 | ID=Msa0634450-mRNA-1:exon:5603;Parent=Msa0634450-mRNA-1 |
chr4_3 | exon | 21674882 | 21674974 | 21674882 | ID=Msa0634450-mRNA-1:exon:5602;Parent=Msa0634450-mRNA-1 |
chr4_3 | exon | 21676587 | 21676674 | 21676587 | ID=Msa0634450-mRNA-1:exon:5601;Parent=Msa0634450-mRNA-1 |
chr4_3 | exon | 21677810 | 21677833 | 21677810 | ID=Msa0634450-mRNA-1:exon:5600;Parent=Msa0634450-mRNA-1 |
chr4_3 | exon | 21678480 | 21678715 | 21678480 | ID=Msa0634450-mRNA-1:exon:5599;Parent=Msa0634450-mRNA-1 |
chr4_3 | CDS | 21678480 | 21678715 | 21678480 | ID=Msa0634450-mRNA-1:cds;Parent=Msa0634450-mRNA-1 |
chr4_3 | CDS | 21677810 | 21677833 | 21677810 | ID=Msa0634450-mRNA-1:cds;Parent=Msa0634450-mRNA-1 |
chr4_3 | CDS | 21676587 | 21676674 | 21676587 | ID=Msa0634450-mRNA-1:cds;Parent=Msa0634450-mRNA-1 |
chr4_3 | CDS | 21674882 | 21674974 | 21674882 | ID=Msa0634450-mRNA-1:cds;Parent=Msa0634450-mRNA-1 |
chr4_3 | CDS | 21674455 | 21674487 | 21674455 | ID=Msa0634450-mRNA-1:cds;Parent=Msa0634450-mRNA-1 |
chr4_3 | CDS | 21674314 | 21674370 | 21674314 | ID=Msa0634450-mRNA-1:cds;Parent=Msa0634450-mRNA-1 |
chr4_3 | CDS | 21671710 | 21671820 | 21671710 | ID=Msa0634450-mRNA-1:cds;Parent=Msa0634450-mRNA-1 |
chr4_3 | three_prime_UTR | 21671378 | 21671709 | 21671378 | ID=Msa0634450-mRNA-1:three_prime_utr;Parent=Msa0634450-mRNA-1 |
Gene Sequence |
Protein sequence |