AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0108550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0108550 MtrunA17_Chr1g0165341 93.841 276 0 1 2 260 28 303 0.0 534
Msa0108550 MtrunA17_Chr5g0445011 57.971 276 96 4 4 260 31 305 9.15e-120 344
Msa0108550 MtrunA17_Chr8g0364041 55.435 276 105 2 2 260 32 306 4.31e-110 320
Msa0108550 MtrunA17_Chr5g0415261 55.072 276 106 2 2 260 32 306 9.35e-110 318
Msa0108550 MtrunA17_Chr7g0268381 57.895 247 86 2 2 231 39 284 1.96e-107 313
Msa0108550 MtrunA17_Chr8g0378521 59.109 247 83 2 2 231 34 279 2.99e-107 312
Msa0108550 MtrunA17_Chr1g0186811 42.972 249 122 4 3 233 39 285 5.01e-75 231
Msa0108550 MtrunA17_Chr1g0190121 38.722 266 143 4 2 249 38 301 4.18e-73 226
Msa0108550 MtrunA17_Chr5g0436061 39.773 264 139 4 3 248 56 317 1.45e-72 224
Msa0108550 MtrunA17_Chr8g0387541 38.489 278 147 5 2 257 39 314 2.40e-72 224
Msa0108550 MtrunA17_Chr7g0274931 38.868 265 142 4 3 249 39 301 2.70e-72 224
Msa0108550 MtrunA17_Chr1g0167751 41.767 249 125 4 3 233 39 285 7.90e-72 223
Msa0108550 MtrunA17_Chr7g0272371 42.800 250 123 4 2 233 40 287 2.01e-71 221
Msa0108550 MtrunA17_Chr8g0334361 40.000 250 130 4 2 233 36 283 3.77e-71 220
Msa0108550 MtrunA17_Chr3g0097231 42.553 235 114 5 14 229 216 448 6.07e-51 173
Msa0108550 MtrunA17_Chr2g0330331 40.079 252 125 7 2 229 65 314 3.13e-46 157
Msa0108550 MtrunA17_Chr2g0330311 40.254 236 118 7 14 229 243 475 3.41e-44 155
Msa0108550 MtrunA17_Chr2g0322121 34.981 263 139 8 2 233 676 937 8.53e-42 152
Msa0108550 MtrunA17_Chr4g0025471 34.981 263 139 9 2 233 681 942 2.02e-40 148
Msa0108550 MtrunA17_Chr8g0369981 32.423 293 119 11 1 216 104 394 2.39e-30 117
Msa0108550 MtrunA17_Chr2g0330011 47.788 113 49 4 5 108 242 353 2.44e-20 89.0
Msa0108550 MtrunA17_Chr1g0196211 33.146 178 93 7 74 226 4 180 7.17e-20 85.9
Msa0108550 MtrunA17_Chr1g0196221 46.753 77 35 1 2 72 560 636 4.35e-15 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0108550 AT1G50370.1 92.391 276 4 1 2 260 28 303 0.0 529
Msa0108550 AT3G19980.1 92.029 276 5 1 2 260 28 303 0.0 528
Msa0108550 AT4G26720.1 60.072 278 87 5 4 260 31 305 9.03e-124 354
Msa0108550 AT5G55260.1 58.333 276 95 4 4 260 31 305 4.17e-121 348
Msa0108550 AT5G55260.2 50.789 317 95 5 4 260 31 346 3.01e-112 327
Msa0108550 AT1G10430.2 55.797 276 104 2 2 260 32 306 8.23e-111 322
Msa0108550 AT1G10430.1 55.797 276 104 2 2 260 32 306 8.23e-111 322
Msa0108550 AT1G69960.1 55.072 276 106 2 2 260 33 307 1.52e-109 318
Msa0108550 AT1G59830.1 55.435 276 105 2 2 260 32 306 1.66e-109 318
Msa0108550 AT3G58500.1 54.710 276 107 2 2 260 39 313 1.07e-108 317
Msa0108550 AT2G42500.1 54.710 276 107 2 2 260 39 313 1.60e-108 316
Msa0108550 AT1G59830.2 58.333 216 73 1 2 200 32 247 8.97e-92 272
Msa0108550 AT2G42500.2 48.276 261 116 3 18 260 7 266 4.41e-84 252
Msa0108550 AT2G29400.1 41.221 262 135 3 3 247 56 315 1.23e-74 230
Msa0108550 AT2G39840.1 41.328 271 129 5 2 244 52 320 2.03e-74 229
Msa0108550 AT5G43380.1 39.785 279 143 5 3 258 39 315 3.05e-74 229
Msa0108550 AT5G43380.2 39.785 279 143 5 3 258 39 315 3.22e-74 229
Msa0108550 AT5G43380.3 39.785 279 143 5 3 258 39 315 3.71e-74 229
Msa0108550 AT5G27840.1 43.600 250 121 4 2 233 44 291 1.47e-73 227
Msa0108550 AT5G27840.4 43.600 250 121 4 2 233 44 291 2.48e-73 227
Msa0108550 AT5G27840.2 43.600 250 121 4 2 233 44 291 2.66e-73 227
Msa0108550 AT5G27840.3 43.600 250 121 4 2 233 44 291 2.66e-73 227
Msa0108550 AT3G46820.1 42.570 249 123 4 3 233 49 295 4.15e-73 226
Msa0108550 AT3G05580.1 42.800 250 123 4 2 233 44 291 1.20e-72 225
Msa0108550 AT5G59160.3 41.365 249 126 4 3 233 49 295 1.37e-72 224
Msa0108550 AT5G59160.2 41.365 249 126 4 3 233 49 295 1.37e-72 224
Msa0108550 AT5G59160.1 41.365 249 126 4 3 233 49 295 1.37e-72 224
Msa0108550 AT4G11240.1 38.628 277 146 5 3 257 40 314 2.69e-72 224
Msa0108550 AT1G64040.1 38.489 278 147 5 2 257 39 314 5.08e-71 221
Msa0108550 AT3G05580.2 44.286 210 98 3 2 193 44 252 8.53e-63 197
Msa0108550 AT2G42500.4 67.188 128 39 1 2 126 39 166 8.44e-60 187
Msa0108550 AT2G42500.3 67.717 127 38 1 2 125 39 165 1.34e-59 187
Msa0108550 AT2G42500.5 67.717 127 38 1 2 125 39 165 2.92e-59 186
Msa0108550 AT2G42810.1 40.851 235 118 4 14 229 218 450 1.04e-52 178
Msa0108550 AT2G42810.5 40.851 235 118 4 14 229 218 450 1.04e-52 178
Msa0108550 AT2G42810.4 40.851 235 118 4 14 229 218 450 1.04e-52 178
Msa0108550 AT2G42810.3 39.044 251 128 5 2 229 255 503 3.62e-52 178
Msa0108550 AT2G42810.2 39.044 251 128 5 2 229 256 504 4.31e-52 177
Msa0108550 AT1G03445.2 36.502 263 134 8 2 233 488 748 8.19e-45 160
Msa0108550 AT1G03445.1 36.502 263 134 8 2 233 488 748 9.21e-45 160
Msa0108550 AT4G03080.1 35.849 265 134 8 2 233 562 823 4.88e-43 156
Msa0108550 AT2G27210.2 34.221 263 141 8 2 233 682 943 3.08e-39 145
Msa0108550 AT2G27210.1 34.221 263 141 8 2 233 687 948 3.36e-39 145
Msa0108550 AT1G08420.2 33.840 263 142 8 2 233 693 954 1.77e-38 143
Msa0108550 AT1G08420.1 33.840 263 142 8 2 233 698 959 1.88e-38 143
Msa0108550 AT5G63870.1 32.836 268 110 9 17 216 77 342 2.83e-25 103
Msa0108550 AT5G63870.2 32.836 268 110 9 17 216 77 342 2.83e-25 103
Msa0108550 AT5G63870.3 46.154 117 60 2 17 130 77 193 1.55e-23 97.1
Msa0108550 AT5G10900.2 28.755 233 122 7 2 192 203 433 1.72e-20 90.9
Msa0108550 AT5G10900.1 28.755 233 122 7 2 192 203 433 1.76e-20 90.9
Msa0108550 AT5G10900.3 28.755 233 122 7 2 192 203 433 1.82e-20 90.9
Msa0108550 AT1G48120.1 40.441 136 73 4 2 130 635 769 3.38e-20 90.5

Find 59 sgRNAs with CRISPR-Local

Find 1072 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTAGAATGTTCAAATATT+TGG 0.150671 1_3:+20137451 None:intergenic
GTTCCATATTTCTTATAATT+TGG 0.153299 1_3:-20137622 Msa0108550:exon
TTGTAAAATTATGCAGTAAA+TGG 0.198566 1_3:-20137579 Msa0108550:three_prime_UTR
TTGCCAAATTATAAGAAATA+TGG 0.216367 1_3:+20137619 None:intergenic
TCTTAGTTTCAATGAAAATA+TGG 0.227077 1_3:-20139934 Msa0108550:intron
CCACAACGGTAACAATAATT+AGG 0.237846 1_3:+20139972 None:intergenic
GTGTGAGTTGTCTACTTTCA+TGG 0.258082 1_3:+20142866 None:intergenic
ACACTTTCTGCAATTATAGA+TGG 0.279913 1_3:-20142245 Msa0108550:CDS
TTTCATGGTTTCCACGTAGA+AGG 0.307041 1_3:+20142881 None:intergenic
AAATGGCTTTCTATTATGAT+TGG 0.333907 1_3:-20137562 Msa0108550:three_prime_UTR
GATGAATGCCAGAGAAAGTA+TGG 0.349004 1_3:-20142314 Msa0108550:CDS
ATGTCACCACAAACAGTTAC+TGG 0.360532 1_3:+20143627 None:intergenic
TAGCATTTCCATACTTTCTC+TGG 0.362451 1_3:+20142306 None:intergenic
AAGTACATGTTCCAAGATAA+AGG 0.383237 1_3:-20140533 Msa0108550:CDS
CAGTTACAAGGCCTTTATCT+TGG 0.389398 1_3:+20140522 None:intergenic
GCCCATGTTTCAATATCTTC+AGG 0.398413 1_3:+20140748 None:intergenic
CGTAGAAGGGTTATATTAGC+AGG 0.427554 1_3:+20142895 None:intergenic
CTCCACATAAGATCACAAAA+TGG 0.447030 1_3:+20140775 None:intergenic
GGTTAAAGAGATCTTAATTG+AGG 0.467806 1_3:-20143676 Msa0108550:CDS
ACTGTTTGTGGTGACATTCA+TGG 0.492582 1_3:-20143621 Msa0108550:CDS
CCTAATTATTGTTACCGTTG+TGG 0.493473 1_3:-20139972 Msa0108550:CDS
GCAGTCAGTCCACGTGGAGC+TGG 0.503063 1_3:-20140727 Msa0108550:CDS
TAGAATGTTCAAATATTTGG+TGG 0.503441 1_3:+20137454 None:intergenic
TTCAGATGCTTACAGTTACA+AGG 0.508425 1_3:+20140510 None:intergenic
CGGATCCCGGGTTACATCTG+AGG 0.510087 1_3:-20140695 Msa0108550:intron
AAATATGGAACACCTGTCCT+AGG 0.510145 1_3:+20137634 None:intergenic
ACCTAGCTTTAAGAAGCAAA+AGG 0.522956 1_3:+20143380 None:intergenic
TTCATGGTTTCCACGTAGAA+GGG 0.527118 1_3:+20142882 None:intergenic
AGTCTCGGGCACGTGCCCAC+CGG 0.531838 1_3:+20143566 None:intergenic
TAGGGTGACTTTGTTGATCG+TGG 0.540571 1_3:-20143430 Msa0108550:CDS
AATAGTCCAGTAACTGTTTG+TGG 0.542664 1_3:-20143633 Msa0108550:CDS
ACAATCAGATGAGAGGGCCT+AGG 0.546455 1_3:-20137651 Msa0108550:CDS
CAGATGAGAGGGCCTAGGAC+AGG 0.555018 1_3:-20137646 Msa0108550:CDS
ACAGTTACTGGACTATTCAC+AGG 0.560124 1_3:+20143639 None:intergenic
TCAGTCCACGTGGAGCTGGT+TGG 0.561248 1_3:-20140723 Msa0108550:CDS
AGTATGGAAATGCTAATGCT+TGG 0.570861 1_3:-20142298 Msa0108550:CDS
AGGAGAACAATCAGATGAGA+GGG 0.574421 1_3:-20137657 Msa0108550:CDS
TCCTGAAGATATTGAAACAT+GGG 0.588789 1_3:-20140749 Msa0108550:CDS
GAGGAGAACAATCAGATGAG+AGG 0.609057 1_3:-20137658 Msa0108550:CDS
GCACATCAACTTGTACAAGA+AGG 0.609781 1_3:-20140560 Msa0108550:CDS
TCACAAAATGGCCCCTCGTG+AGG 0.613649 1_3:+20140787 None:intergenic
GTTGATGTGCTCGACAAACA+AGG 0.619450 1_3:+20140573 None:intergenic
ATCCTGAAGATATTGAAACA+TGG 0.620272 1_3:-20140750 Msa0108550:CDS
ACATTACCTCAGATGTAACC+CGG 0.622692 1_3:+20140689 None:intergenic
GAACTGTGAAATTCCTCACG+AGG 0.623314 1_3:-20140800 Msa0108550:CDS
AGCTTTAAGAAGCAAAAGGA+TGG 0.627769 1_3:+20143384 None:intergenic
GTGCTCGACAAACAAGGTCA+AGG 0.639424 1_3:+20140579 None:intergenic
AACTGTGAAATTCCTCACGA+GGG 0.643578 1_3:-20140799 Msa0108550:CDS
GTAGAAGGGTTATATTAGCA+GGG 0.645634 1_3:+20142896 None:intergenic
GACAGATAAGAGTCATTGAG+CGG 0.664068 1_3:-20140822 Msa0108550:intron
CATTACCTCAGATGTAACCC+GGG 0.673485 1_3:+20140690 None:intergenic
TGTAAGATAGTCGAAAACAT+CGG 0.682696 1_3:+20142265 None:intergenic
ACATGGGCAGTCAGTCCACG+TGG 0.685712 1_3:-20140733 Msa0108550:CDS
ACTGTGAAATTCCTCACGAG+GGG 0.691236 1_3:-20140798 Msa0108550:CDS
ACAGTGTTAGTCATGTATTG+TGG 0.694157 1_3:-20137539 Msa0108550:three_prime_UTR
TGAAAGTAGACAACTCACAC+AGG 0.696061 1_3:-20142863 Msa0108550:intron
GCTAATATAACCCTTCTACG+TGG 0.714294 1_3:-20142892 Msa0108550:CDS
TAGAAGCTACATTTCCACAA+CGG 0.718445 1_3:+20139958 None:intergenic
AAAAGCCAACCAGCTCCACG+TGG 0.718658 1_3:+20140718 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTATATAATAATGATTAAA+GGG + chr1_3:20138071-20138090 None:intergenic 10.0%
!! TTGTATATAATAATGATTAA+AGG + chr1_3:20138072-20138091 None:intergenic 10.0%
!!! GAATTTAATTTTTTTTTTGA+AGG - chr1_3:20138334-20138353 Msa0108550:intron 10.0%
!! AAGTGTATTATAAAAAAAAT+AGG - chr1_3:20138377-20138396 Msa0108550:intron 10.0%
!!! CTTTATTTGTTAAAATAAAT+TGG - chr1_3:20140124-20140143 Msa0108550:intron 10.0%
!!! ATATGTATCTTTTTAATAAA+AGG - chr1_3:20140222-20140241 Msa0108550:intron 10.0%
!! AAAAAAAAAGTTATTGTTAA+AGG + chr1_3:20141667-20141686 None:intergenic 10.0%
!!! AACAATAACTTTTTTTTTTT+TGG - chr1_3:20141669-20141688 Msa0108550:intron 10.0%
!!! ACAATAACTTTTTTTTTTTT+GGG - chr1_3:20141670-20141689 Msa0108550:intron 10.0%
!!! GTTTTATTGATTTTTTAATA+TGG + chr1_3:20143496-20143515 None:intergenic 10.0%
!! AAAAATACTAAAACAAAAAT+AGG + chr1_3:20145235-20145254 None:intergenic 10.0%
!!! TTTTGTCATTTTTTTTTTTT+TGG + chr1_3:20145365-20145384 None:intergenic 10.0%
!! TGTATATAATAATGATTAAA+GGG + chr1_3:20138071-20138090 None:intergenic 10.0%
!! TTGTATATAATAATGATTAA+AGG + chr1_3:20138072-20138091 None:intergenic 10.0%
!!! GAATTTAATTTTTTTTTTGA+AGG - chr1_3:20138334-20138353 Msa0108550:intron 10.0%
!! AAGTGTATTATAAAAAAAAT+AGG - chr1_3:20138377-20138396 Msa0108550:intron 10.0%
!!! CTTTATTTGTTAAAATAAAT+TGG - chr1_3:20140124-20140143 Msa0108550:intron 10.0%
!!! ATATGTATCTTTTTAATAAA+AGG - chr1_3:20140222-20140241 Msa0108550:intron 10.0%
!! AAAAAAAAAGTTATTGTTAA+AGG + chr1_3:20141667-20141686 None:intergenic 10.0%
!!! AACAATAACTTTTTTTTTTT+TGG - chr1_3:20141669-20141688 Msa0108550:intron 10.0%
!!! ACAATAACTTTTTTTTTTTT+GGG - chr1_3:20141670-20141689 Msa0108550:intron 10.0%
!!! GTTTTATTGATTTTTTAATA+TGG + chr1_3:20143496-20143515 None:intergenic 10.0%
!! AAAAATACTAAAACAAAAAT+AGG + chr1_3:20145235-20145254 None:intergenic 10.0%
!!! TTTTGTCATTTTTTTTTTTT+TGG + chr1_3:20145365-20145384 None:intergenic 10.0%
!!! GTTGTGAATAAATATTTTAT+GGG + chr1_3:20137333-20137352 None:intergenic 15.0%
!!! AGTTGTGAATAAATATTTTA+TGG + chr1_3:20137334-20137353 None:intergenic 15.0%
!! ATAAAATATTTATTCACAAC+TGG - chr1_3:20137333-20137352 Msa0108550:three_prime_UTR 15.0%
!! TCATACAAAGTTATTATTTA+AGG - chr1_3:20137821-20137840 Msa0108550:intron 15.0%
!! CTCAAAAATAAATAATAACA+AGG + chr1_3:20137885-20137904 None:intergenic 15.0%
!!! ATTTTAAAGGACTAAAATTT+GGG + chr1_3:20137914-20137933 None:intergenic 15.0%
!!! AATTTTAAAGGACTAAAATT+TGG + chr1_3:20137915-20137934 None:intergenic 15.0%
!!! AATTTTAGTCCTTTAAAATT+TGG - chr1_3:20137915-20137934 Msa0108550:intron 15.0%
!!! AACAATTTACCAAATTTTAA+AGG + chr1_3:20137927-20137946 None:intergenic 15.0%
!!! ATATCTATAATTTTGTTTGA+AGG - chr1_3:20138129-20138148 Msa0108550:intron 15.0%
!!! TTTAGACAATTTTTTTTTTG+TGG - chr1_3:20138197-20138216 Msa0108550:intron 15.0%
!!! TTTTTTTTTTTTTTGGTTCA+AGG - chr1_3:20138410-20138429 Msa0108550:intron 15.0%
!!! TTTTTTTTTTTTTGGTTCAA+GGG - chr1_3:20138411-20138430 Msa0108550:intron 15.0%
!! TATTATCATTATTATCGTTA+GGG - chr1_3:20138867-20138886 Msa0108550:intron 15.0%
!!! TTGTGTTTAATTATTTTGTT+TGG - chr1_3:20138971-20138990 Msa0108550:intron 15.0%
!! ATTATTATTATGAATGTTTC+AGG - chr1_3:20139018-20139037 Msa0108550:intron 15.0%
!! TTCTATCATAAACTATATTT+CGG + chr1_3:20139547-20139566 None:intergenic 15.0%
!! ATTAATTTATTTATCCAAAC+AGG + chr1_3:20140760-20140779 None:intergenic 15.0%
!!! TTTATTTTATCTTAGAGTTT+TGG + chr1_3:20140843-20140862 None:intergenic 15.0%
!!! TTTTGCTTAATTTTAAAACA+AGG + chr1_3:20141106-20141125 None:intergenic 15.0%
!! ATAATTTACTGTTAATTCTA+TGG - chr1_3:20141795-20141814 Msa0108550:intron 15.0%
!!! TCAATATTTTCAAATAAAAC+TGG + chr1_3:20142682-20142701 None:intergenic 15.0%
!!! AGTTTTATTTGAAAATATTG+AGG - chr1_3:20142681-20142700 Msa0108550:intron 15.0%
!!! GTACTTTTAAGTATATTTTA+AGG - chr1_3:20142823-20142842 Msa0108550:intron 15.0%
!!! ATTTATTTTAAAATCTTGGA+TGG - chr1_3:20143051-20143070 Msa0108550:intron 15.0%
!! AAAAATCAATAAAACTGAAA+AGG - chr1_3:20143501-20143520 Msa0108550:intron 15.0%
!! TTATTGAGTAAAATTTATGT+AGG + chr1_3:20144444-20144463 None:intergenic 15.0%
!!! ATTTATTTGATTTGATCTTA+AGG - chr1_3:20144805-20144824 Msa0108550:intron 15.0%
!!! GTTGTGAATAAATATTTTAT+GGG + chr1_3:20137333-20137352 None:intergenic 15.0%
!!! AGTTGTGAATAAATATTTTA+TGG + chr1_3:20137334-20137353 None:intergenic 15.0%
!! ATAAAATATTTATTCACAAC+TGG - chr1_3:20137333-20137352 Msa0108550:three_prime_UTR 15.0%
!! TCATACAAAGTTATTATTTA+AGG - chr1_3:20137821-20137840 Msa0108550:intron 15.0%
!! CTCAAAAATAAATAATAACA+AGG + chr1_3:20137885-20137904 None:intergenic 15.0%
!!! ATTTTAAAGGACTAAAATTT+GGG + chr1_3:20137914-20137933 None:intergenic 15.0%
!!! AATTTTAAAGGACTAAAATT+TGG + chr1_3:20137915-20137934 None:intergenic 15.0%
!!! AATTTTAGTCCTTTAAAATT+TGG - chr1_3:20137915-20137934 Msa0108550:intron 15.0%
!!! AACAATTTACCAAATTTTAA+AGG + chr1_3:20137927-20137946 None:intergenic 15.0%
!!! ATATCTATAATTTTGTTTGA+AGG - chr1_3:20138129-20138148 Msa0108550:intron 15.0%
!!! TTTAGACAATTTTTTTTTTG+TGG - chr1_3:20138197-20138216 Msa0108550:intron 15.0%
!!! TTTTTTTTTTTTTTGGTTCA+AGG - chr1_3:20138410-20138429 Msa0108550:intron 15.0%
!!! TTTTTTTTTTTTTGGTTCAA+GGG - chr1_3:20138411-20138430 Msa0108550:intron 15.0%
!! TATTATCATTATTATCGTTA+GGG - chr1_3:20138867-20138886 Msa0108550:intron 15.0%
!!! TTGTGTTTAATTATTTTGTT+TGG - chr1_3:20138971-20138990 Msa0108550:intron 15.0%
!! ATTATTATTATGAATGTTTC+AGG - chr1_3:20139018-20139037 Msa0108550:intron 15.0%
!! TTCTATCATAAACTATATTT+CGG + chr1_3:20139547-20139566 None:intergenic 15.0%
!! ATTAATTTATTTATCCAAAC+AGG + chr1_3:20140760-20140779 None:intergenic 15.0%
!!! TTTATTTTATCTTAGAGTTT+TGG + chr1_3:20140843-20140862 None:intergenic 15.0%
!!! TTTTGCTTAATTTTAAAACA+AGG + chr1_3:20141106-20141125 None:intergenic 15.0%
!! ATAATTTACTGTTAATTCTA+TGG - chr1_3:20141795-20141814 Msa0108550:intron 15.0%
!!! TCAATATTTTCAAATAAAAC+TGG + chr1_3:20142682-20142701 None:intergenic 15.0%
!!! AGTTTTATTTGAAAATATTG+AGG - chr1_3:20142681-20142700 Msa0108550:intron 15.0%
!!! GTACTTTTAAGTATATTTTA+AGG - chr1_3:20142823-20142842 Msa0108550:intron 15.0%
!!! ATTTATTTTAAAATCTTGGA+TGG - chr1_3:20143051-20143070 Msa0108550:intron 15.0%
!! AAAAATCAATAAAACTGAAA+AGG - chr1_3:20143501-20143520 Msa0108550:intron 15.0%
!! TTATTGAGTAAAATTTATGT+AGG + chr1_3:20144444-20144463 None:intergenic 15.0%
!!! ATTTATTTGATTTGATCTTA+AGG - chr1_3:20144805-20144824 Msa0108550:intron 15.0%
!! AAGATTGTTTAATAGAACTT+AGG + chr1_3:20137965-20137984 None:intergenic 20.0%
!! AAGTTCTATTAAACAATCTT+TGG - chr1_3:20137965-20137984 Msa0108550:intron 20.0%
!! ATAAGTCACTTGAATAAAAT+TGG - chr1_3:20137993-20138012 Msa0108550:intron 20.0%
!! CTATTATCATTATTATCGTT+AGG - chr1_3:20138866-20138885 Msa0108550:intron 20.0%
!!! ATAAAAATGTAATTAGTCTC+GGG + chr1_3:20139166-20139185 None:intergenic 20.0%
!!! CATAAAAATGTAATTAGTCT+CGG + chr1_3:20139167-20139186 None:intergenic 20.0%
!! TATGTTATGTTATGTATTGT+TGG - chr1_3:20139201-20139220 Msa0108550:intron 20.0%
!! TTTGTGACTTTCTAATTTAT+TGG - chr1_3:20139430-20139449 Msa0108550:intron 20.0%
!! TGATTTAGAAATTAATGAGT+TGG - chr1_3:20139520-20139539 Msa0108550:intron 20.0%
!! TAGTTTATGATAGAACATTA+CGG - chr1_3:20139552-20139571 Msa0108550:intron 20.0%
!!! TAATTGATTCAGTAATGTAA+AGG - chr1_3:20140163-20140182 Msa0108550:intron 20.0%
!! TACACAAAATTAACATCAAT+TGG + chr1_3:20140349-20140368 None:intergenic 20.0%
!! TATCAAAGTCAAAATTAAAG+AGG + chr1_3:20141306-20141325 None:intergenic 20.0%
!! TAAAGTGAAAAGTAAAAACA+GGG + chr1_3:20141474-20141493 None:intergenic 20.0%
!! ATAAAGTGAAAAGTAAAAAC+AGG + chr1_3:20141475-20141494 None:intergenic 20.0%
!! CATTTCTATTTCAAGAATAA+CGG + chr1_3:20141714-20141733 None:intergenic 20.0%
!! TTGATTCTTACTGTTTAAAA+AGG - chr1_3:20141826-20141845 Msa0108550:intron 20.0%
!! TTGAAAATATTGAGGTAAAA+AGG - chr1_3:20142689-20142708 Msa0108550:intron 20.0%
!!! AGGTATTTTTTTAAATTTGC+AGG - chr1_3:20142709-20142728 Msa0108550:intron 20.0%
!!! TTTTTTTAAATTTGCAGGTA+TGG - chr1_3:20142714-20142733 Msa0108550:intron 20.0%
!! TCTTAGTTTCAATGAAAATA+TGG - chr1_3:20142781-20142800 Msa0108550:intron 20.0%
!! TCTTGATTTATTTAACATGA+AGG + chr1_3:20142978-20142997 None:intergenic 20.0%
!!! AGGCATTTATTTTAAAATCT+TGG - chr1_3:20143047-20143066 Msa0108550:intron 20.0%
!!! AATAAAATGGCTATTTTAGT+AGG - chr1_3:20143921-20143940 Msa0108550:intron 20.0%
!!! ACTATTTTTGTTCTGTTTTT+AGG + chr1_3:20144078-20144097 None:intergenic 20.0%
!! TAAAAACAGAACAAAAATAG+TGG - chr1_3:20144077-20144096 Msa0108550:intron 20.0%
!! AAAAACAGAACAAAAATAGT+GGG - chr1_3:20144078-20144097 Msa0108550:intron 20.0%
!! ACAATTGTGTAAATAAATCA+AGG + chr1_3:20144253-20144272 None:intergenic 20.0%
!! CCAAATTATAATAATGTTGA+TGG + chr1_3:20144280-20144299 None:intergenic 20.0%
!! CCATCAACATTATTATAATT+TGG - chr1_3:20144277-20144296 Msa0108550:intron 20.0%
!!! TATAATTTGGTTTGCATTTT+TGG - chr1_3:20144290-20144309 Msa0108550:intron 20.0%
!!! ACTTTATTTAACTATTGGAT+TGG + chr1_3:20144596-20144615 None:intergenic 20.0%
!!! TAGTGACTTTATTTAACTAT+TGG + chr1_3:20144601-20144620 None:intergenic 20.0%
!! AGTCACTAAATAAAATTGAA+AGG - chr1_3:20144613-20144632 Msa0108550:intron 20.0%
!! GTCACTAAATAAAATTGAAA+GGG - chr1_3:20144614-20144633 Msa0108550:intron 20.0%
!! TCACTAAATAAAATTGAAAG+GGG - chr1_3:20144615-20144634 Msa0108550:intron 20.0%
!!! TTGAACTAATTTGCAATTTT+TGG - chr1_3:20144678-20144697 Msa0108550:intron 20.0%
!! ATCAAATCAAATAAATAGCA+GGG + chr1_3:20144801-20144820 None:intergenic 20.0%
!!! ACAAAACAGTAATTTTCATT+AGG + chr1_3:20144850-20144869 None:intergenic 20.0%
!! GTTCCATATTTCTTATAATT+TGG - chr1_3:20145093-20145112 Msa0108550:intron 20.0%
!! TTGCCAAATTATAAGAAATA+TGG + chr1_3:20145099-20145118 None:intergenic 20.0%
!! TTGTAAAATTATGCAGTAAA+TGG - chr1_3:20145136-20145155 Msa0108550:intron 20.0%
!! AACTAGAATGTTCAAATATT+TGG + chr1_3:20145267-20145286 None:intergenic 20.0%
!! AAGATTGTTTAATAGAACTT+AGG + chr1_3:20137965-20137984 None:intergenic 20.0%
!! AAGTTCTATTAAACAATCTT+TGG - chr1_3:20137965-20137984 Msa0108550:intron 20.0%
!! ATAAGTCACTTGAATAAAAT+TGG - chr1_3:20137993-20138012 Msa0108550:intron 20.0%
!! CTATTATCATTATTATCGTT+AGG - chr1_3:20138866-20138885 Msa0108550:intron 20.0%
!!! ATAAAAATGTAATTAGTCTC+GGG + chr1_3:20139166-20139185 None:intergenic 20.0%
!!! CATAAAAATGTAATTAGTCT+CGG + chr1_3:20139167-20139186 None:intergenic 20.0%
!! TATGTTATGTTATGTATTGT+TGG - chr1_3:20139201-20139220 Msa0108550:intron 20.0%
!! TTTGTGACTTTCTAATTTAT+TGG - chr1_3:20139430-20139449 Msa0108550:intron 20.0%
!! TGATTTAGAAATTAATGAGT+TGG - chr1_3:20139520-20139539 Msa0108550:intron 20.0%
!! TAGTTTATGATAGAACATTA+CGG - chr1_3:20139552-20139571 Msa0108550:intron 20.0%
!!! TAATTGATTCAGTAATGTAA+AGG - chr1_3:20140163-20140182 Msa0108550:intron 20.0%
!! TACACAAAATTAACATCAAT+TGG + chr1_3:20140349-20140368 None:intergenic 20.0%
!! TATCAAAGTCAAAATTAAAG+AGG + chr1_3:20141306-20141325 None:intergenic 20.0%
!! TAAAGTGAAAAGTAAAAACA+GGG + chr1_3:20141474-20141493 None:intergenic 20.0%
!! ATAAAGTGAAAAGTAAAAAC+AGG + chr1_3:20141475-20141494 None:intergenic 20.0%
!! CATTTCTATTTCAAGAATAA+CGG + chr1_3:20141714-20141733 None:intergenic 20.0%
!! TTGATTCTTACTGTTTAAAA+AGG - chr1_3:20141826-20141845 Msa0108550:intron 20.0%
!! TTGAAAATATTGAGGTAAAA+AGG - chr1_3:20142689-20142708 Msa0108550:intron 20.0%
!!! AGGTATTTTTTTAAATTTGC+AGG - chr1_3:20142709-20142728 Msa0108550:intron 20.0%
!!! TTTTTTTAAATTTGCAGGTA+TGG - chr1_3:20142714-20142733 Msa0108550:intron 20.0%
!! TCTTAGTTTCAATGAAAATA+TGG - chr1_3:20142781-20142800 Msa0108550:intron 20.0%
!! TCTTGATTTATTTAACATGA+AGG + chr1_3:20142978-20142997 None:intergenic 20.0%
!!! AGGCATTTATTTTAAAATCT+TGG - chr1_3:20143047-20143066 Msa0108550:intron 20.0%
!!! AATAAAATGGCTATTTTAGT+AGG - chr1_3:20143921-20143940 Msa0108550:intron 20.0%
!!! ACTATTTTTGTTCTGTTTTT+AGG + chr1_3:20144078-20144097 None:intergenic 20.0%
!! TAAAAACAGAACAAAAATAG+TGG - chr1_3:20144077-20144096 Msa0108550:intron 20.0%
!! AAAAACAGAACAAAAATAGT+GGG - chr1_3:20144078-20144097 Msa0108550:intron 20.0%
!! ACAATTGTGTAAATAAATCA+AGG + chr1_3:20144253-20144272 None:intergenic 20.0%
!! CCAAATTATAATAATGTTGA+TGG + chr1_3:20144280-20144299 None:intergenic 20.0%
!! CCATCAACATTATTATAATT+TGG - chr1_3:20144277-20144296 Msa0108550:intron 20.0%
!!! TATAATTTGGTTTGCATTTT+TGG - chr1_3:20144290-20144309 Msa0108550:intron 20.0%
!!! ACTTTATTTAACTATTGGAT+TGG + chr1_3:20144596-20144615 None:intergenic 20.0%
!!! TAGTGACTTTATTTAACTAT+TGG + chr1_3:20144601-20144620 None:intergenic 20.0%
!! AGTCACTAAATAAAATTGAA+AGG - chr1_3:20144613-20144632 Msa0108550:intron 20.0%
!! GTCACTAAATAAAATTGAAA+GGG - chr1_3:20144614-20144633 Msa0108550:intron 20.0%
!! TCACTAAATAAAATTGAAAG+GGG - chr1_3:20144615-20144634 Msa0108550:intron 20.0%
!!! TTGAACTAATTTGCAATTTT+TGG - chr1_3:20144678-20144697 Msa0108550:intron 20.0%
!! ATCAAATCAAATAAATAGCA+GGG + chr1_3:20144801-20144820 None:intergenic 20.0%
!!! ACAAAACAGTAATTTTCATT+AGG + chr1_3:20144850-20144869 None:intergenic 20.0%
!! GTTCCATATTTCTTATAATT+TGG - chr1_3:20145093-20145112 Msa0108550:intron 20.0%
!! TTGCCAAATTATAAGAAATA+TGG + chr1_3:20145099-20145118 None:intergenic 20.0%
!! TTGTAAAATTATGCAGTAAA+TGG - chr1_3:20145136-20145155 Msa0108550:intron 20.0%
!! AACTAGAATGTTCAAATATT+TGG + chr1_3:20145267-20145286 None:intergenic 20.0%
!! CTCAAATTTTGTCAAGAAAT+GGG + chr1_3:20137526-20137545 None:intergenic 25.0%
!! ACTCAAATTTTGTCAAGAAA+TGG + chr1_3:20137527-20137546 None:intergenic 25.0%
! TAAAACTTGGCAAAATTGAA+AGG - chr1_3:20137628-20137647 Msa0108550:CDS 25.0%
! AAAACTTGGCAAAATTGAAA+GGG - chr1_3:20137629-20137648 Msa0108550:CDS 25.0%
!! AACTTAGGTTTGATTTCTTA+TGG + chr1_3:20137950-20137969 None:intergenic 25.0%
! TTCTATTAAACAATCTTTGG+AGG - chr1_3:20137968-20137987 Msa0108550:intron 25.0%
!!! TGTGAATTATTTTTGTTGAC+TGG - chr1_3:20138514-20138533 Msa0108550:intron 25.0%
!!! AATTATTTTTGTTGACTGGA+GGG - chr1_3:20138518-20138537 Msa0108550:intron 25.0%
!! CGAGACTAATTACATTTTTA+TGG - chr1_3:20139165-20139184 Msa0108550:intron 25.0%
!! ACCACACAGATAATAATTTT+AGG - chr1_3:20139495-20139514 Msa0108550:intron 25.0%
! TCCTAAAATTATTATCTGTG+TGG + chr1_3:20139499-20139518 None:intergenic 25.0%
! ATCTTGAATGTTAGAGTTAT+TGG - chr1_3:20139732-20139751 Msa0108550:intron 25.0%
! TCTTGAATGTTAGAGTTATT+GGG - chr1_3:20139733-20139752 Msa0108550:intron 25.0%
!! AGGTATGTGTTTAATTTACT+TGG - chr1_3:20139872-20139891 Msa0108550:intron 25.0%
! TACATGATATGAATTACTGT+AGG - chr1_3:20139901-20139920 Msa0108550:intron 25.0%
!! TTAACATTTTAAGCAGAACA+TGG - chr1_3:20139930-20139949 Msa0108550:intron 25.0%
!! TAACATTTTAAGCAGAACAT+GGG - chr1_3:20139931-20139950 Msa0108550:intron 25.0%
! AGAACATGGGAAATTATTAA+AGG - chr1_3:20139944-20139963 Msa0108550:CDS 25.0%
! TAACTGCGATATAAACTAAT+AGG - chr1_3:20140100-20140119 Msa0108550:intron 25.0%
! CATGTTAAAAGAACTAAAAG+TGG + chr1_3:20140251-20140270 None:intergenic 25.0%
! TTCTAATGGCATTTCAAAAA+GGG + chr1_3:20140306-20140325 None:intergenic 25.0%
! TTTCTAATGGCATTTCAAAA+AGG + chr1_3:20140307-20140326 None:intergenic 25.0%
!! GTGTAATTTAATATTTTGCC+AGG - chr1_3:20140364-20140383 Msa0108550:intron 25.0%
! TGTATCTGTGTATTATACTA+TGG - chr1_3:20140733-20140752 Msa0108550:CDS 25.0%
! AAACATTTGCAAGATTGTTT+AGG + chr1_3:20140967-20140986 None:intergenic 25.0%
! TCAAATAAGCTAATCCAAAT+AGG - chr1_3:20141003-20141022 Msa0108550:intron 25.0%
! ATTAACATGTTGTGGTAAAA+GGG + chr1_3:20141243-20141262 None:intergenic 25.0%
! TATTAACATGTTGTGGTAAA+AGG + chr1_3:20141244-20141263 None:intergenic 25.0%
!! TTTTACCACAACATGTTAAT+AGG - chr1_3:20141243-20141262 Msa0108550:intron 25.0%
! TTTACCACAACATGTTAATA+GGG - chr1_3:20141244-20141263 Msa0108550:intron 25.0%
!! ATATGACATGCTTGTATTTT+TGG - chr1_3:20141278-20141297 Msa0108550:intron 25.0%
! TTAATAGTACTGCACATAAT+TGG - chr1_3:20141326-20141345 Msa0108550:intron 25.0%
! CTAGAATAAAGTAAGGAAAT+AGG + chr1_3:20141365-20141384 None:intergenic 25.0%
! CTATTTCCTTACTTTATTCT+AGG - chr1_3:20141363-20141382 Msa0108550:intron 25.0%
! TGATTTCCTAGAATAAAGTA+AGG + chr1_3:20141372-20141391 None:intergenic 25.0%
!! TTGGTTTGACAAAAAAAGAA+TGG + chr1_3:20141574-20141593 None:intergenic 25.0%
!!! TTTTTTTGTCAAACCAAAAC+AGG - chr1_3:20141577-20141596 Msa0108550:intron 25.0%
! AGGTTAATAATTAACCAAAC+AGG + chr1_3:20141647-20141666 None:intergenic 25.0%
! AAACTGATATCTTATTGTAG+TGG + chr1_3:20141760-20141779 None:intergenic 25.0%
! ATCAGTTTATATGCTATTGT+TGG - chr1_3:20141772-20141791 Msa0108550:intron 25.0%
!!! GATTCATTTTTTTGATCAAC+TGG - chr1_3:20142256-20142275 Msa0108550:CDS 25.0%
!! TCTGAAATAGTCCAATTAAT+AGG - chr1_3:20142329-20142348 Msa0108550:CDS 25.0%
! CTGAAATAGTCCAATTAATA+GGG - chr1_3:20142330-20142349 Msa0108550:CDS 25.0%
! TGAAATAGTCCAATTAATAG+GGG - chr1_3:20142331-20142350 Msa0108550:CDS 25.0%
!! ACTTAAAAGTACAAAAGCTT+CGG + chr1_3:20142815-20142834 None:intergenic 25.0%
! ATGAGATATGCAAAAAACAA+AGG + chr1_3:20142893-20142912 None:intergenic 25.0%
!!! TTTGTTTTTTGCATATCTCA+TGG - chr1_3:20142892-20142911 Msa0108550:CDS 25.0%
!!! TTGTTTTTTGCATATCTCAT+GGG - chr1_3:20142893-20142912 Msa0108550:CDS 25.0%
! TTGGAAGCTATAAAGAAAAA+CGG + chr1_3:20142938-20142957 None:intergenic 25.0%
! TTCCAATAGTATTTCTTGTA+TGG - chr1_3:20142952-20142971 Msa0108550:intron 25.0%
! TTAAATAAATCAAGAGACAC+AGG - chr1_3:20142983-20143002 Msa0108550:intron 25.0%
! CAAAACAATGACTTATTTGA+GGG - chr1_3:20143084-20143103 Msa0108550:intron 25.0%
!! AGAGGATTTTCATATGAAAT+TGG - chr1_3:20143295-20143314 Msa0108550:intron 25.0%
! ATATGAAATTGGATGTTGAA+AGG - chr1_3:20143306-20143325 Msa0108550:intron 25.0%
! TATGAAATTGGATGTTGAAA+GGG - chr1_3:20143307-20143326 Msa0108550:intron 25.0%
! ATGAAAATAACAGGAGAATA+TGG - chr1_3:20143342-20143361 Msa0108550:intron 25.0%
!! GTAGATGCTATTGAAATTTT+AGG - chr1_3:20143541-20143560 Msa0108550:intron 25.0%
!!! AATTTTAGGAATCAGATGTA+AGG - chr1_3:20143555-20143574 Msa0108550:CDS 25.0%
!! AAAATATTAGTCTACTAACG+AGG - chr1_3:20143609-20143628 Msa0108550:CDS 25.0%
!!! TTGTTGAATAAAAGGTGTTT+AGG - chr1_3:20143722-20143741 Msa0108550:intron 25.0%
! AGGAAAATATAGACTAAAGT+AGG - chr1_3:20143742-20143761 Msa0108550:intron 25.0%
!! TTTTCCTAAATCTAATAGCA+AGG - chr1_3:20143863-20143882 Msa0108550:intron 25.0%
! CTAGAATGAGTGAAATAAAA+TGG - chr1_3:20143908-20143927 Msa0108550:intron 25.0%
!! TTTAGTAGGATAGGATTTTT+AGG - chr1_3:20143935-20143954 Msa0108550:intron 25.0%
! ATAAATCAAGGATCAGTATA+TGG + chr1_3:20144241-20144260 None:intergenic 25.0%
! CACTAAATAAAATTGAAAGG+GGG - chr1_3:20144616-20144635 Msa0108550:intron 25.0%
!!! TAATTTGCAATTTTTGGTGT+TGG - chr1_3:20144684-20144703 Msa0108550:intron 25.0%
! GATCAAATCAAATAAATAGC+AGG + chr1_3:20144802-20144821 None:intergenic 25.0%
!!! TATTTGATTTGATCTTAAGG+TGG - chr1_3:20144808-20144827 Msa0108550:intron 25.0%
!! TTTGTAAACTTGGATTTTGA+TGG - chr1_3:20144939-20144958 Msa0108550:intron 25.0%
! AAATGGCTTTCTATTATGAT+TGG - chr1_3:20145153-20145172 Msa0108550:intron 25.0%
!!! CAAATGCATTGTTTTTTCTT+AGG - chr1_3:20145204-20145223 Msa0108550:intron 25.0%
! TAGAATGTTCAAATATTTGG+TGG + chr1_3:20145264-20145283 None:intergenic 25.0%
!! CTCAAATTTTGTCAAGAAAT+GGG + chr1_3:20137526-20137545 None:intergenic 25.0%
!! ACTCAAATTTTGTCAAGAAA+TGG + chr1_3:20137527-20137546 None:intergenic 25.0%
! TAAAACTTGGCAAAATTGAA+AGG - chr1_3:20137628-20137647 Msa0108550:CDS 25.0%
! AAAACTTGGCAAAATTGAAA+GGG - chr1_3:20137629-20137648 Msa0108550:CDS 25.0%
!! AACTTAGGTTTGATTTCTTA+TGG + chr1_3:20137950-20137969 None:intergenic 25.0%
! TTCTATTAAACAATCTTTGG+AGG - chr1_3:20137968-20137987 Msa0108550:intron 25.0%
!!! TGTGAATTATTTTTGTTGAC+TGG - chr1_3:20138514-20138533 Msa0108550:intron 25.0%
!!! AATTATTTTTGTTGACTGGA+GGG - chr1_3:20138518-20138537 Msa0108550:intron 25.0%
!! CGAGACTAATTACATTTTTA+TGG - chr1_3:20139165-20139184 Msa0108550:intron 25.0%
!! ACCACACAGATAATAATTTT+AGG - chr1_3:20139495-20139514 Msa0108550:intron 25.0%
! TCCTAAAATTATTATCTGTG+TGG + chr1_3:20139499-20139518 None:intergenic 25.0%
! ATCTTGAATGTTAGAGTTAT+TGG - chr1_3:20139732-20139751 Msa0108550:intron 25.0%
! TCTTGAATGTTAGAGTTATT+GGG - chr1_3:20139733-20139752 Msa0108550:intron 25.0%
!! AGGTATGTGTTTAATTTACT+TGG - chr1_3:20139872-20139891 Msa0108550:intron 25.0%
! TACATGATATGAATTACTGT+AGG - chr1_3:20139901-20139920 Msa0108550:intron 25.0%
!! TTAACATTTTAAGCAGAACA+TGG - chr1_3:20139930-20139949 Msa0108550:intron 25.0%
!! TAACATTTTAAGCAGAACAT+GGG - chr1_3:20139931-20139950 Msa0108550:intron 25.0%
! AGAACATGGGAAATTATTAA+AGG - chr1_3:20139944-20139963 Msa0108550:CDS 25.0%
! TAACTGCGATATAAACTAAT+AGG - chr1_3:20140100-20140119 Msa0108550:intron 25.0%
! CATGTTAAAAGAACTAAAAG+TGG + chr1_3:20140251-20140270 None:intergenic 25.0%
! TTCTAATGGCATTTCAAAAA+GGG + chr1_3:20140306-20140325 None:intergenic 25.0%
! TTTCTAATGGCATTTCAAAA+AGG + chr1_3:20140307-20140326 None:intergenic 25.0%
!! GTGTAATTTAATATTTTGCC+AGG - chr1_3:20140364-20140383 Msa0108550:intron 25.0%
! TGTATCTGTGTATTATACTA+TGG - chr1_3:20140733-20140752 Msa0108550:CDS 25.0%
! AAACATTTGCAAGATTGTTT+AGG + chr1_3:20140967-20140986 None:intergenic 25.0%
! TCAAATAAGCTAATCCAAAT+AGG - chr1_3:20141003-20141022 Msa0108550:intron 25.0%
! ATTAACATGTTGTGGTAAAA+GGG + chr1_3:20141243-20141262 None:intergenic 25.0%
! TATTAACATGTTGTGGTAAA+AGG + chr1_3:20141244-20141263 None:intergenic 25.0%
!! TTTTACCACAACATGTTAAT+AGG - chr1_3:20141243-20141262 Msa0108550:intron 25.0%
! TTTACCACAACATGTTAATA+GGG - chr1_3:20141244-20141263 Msa0108550:intron 25.0%
!! ATATGACATGCTTGTATTTT+TGG - chr1_3:20141278-20141297 Msa0108550:intron 25.0%
! TTAATAGTACTGCACATAAT+TGG - chr1_3:20141326-20141345 Msa0108550:intron 25.0%
! CTAGAATAAAGTAAGGAAAT+AGG + chr1_3:20141365-20141384 None:intergenic 25.0%
! CTATTTCCTTACTTTATTCT+AGG - chr1_3:20141363-20141382 Msa0108550:intron 25.0%
! TGATTTCCTAGAATAAAGTA+AGG + chr1_3:20141372-20141391 None:intergenic 25.0%
!! TTGGTTTGACAAAAAAAGAA+TGG + chr1_3:20141574-20141593 None:intergenic 25.0%
!!! TTTTTTTGTCAAACCAAAAC+AGG - chr1_3:20141577-20141596 Msa0108550:intron 25.0%
! AGGTTAATAATTAACCAAAC+AGG + chr1_3:20141647-20141666 None:intergenic 25.0%
! AAACTGATATCTTATTGTAG+TGG + chr1_3:20141760-20141779 None:intergenic 25.0%
! ATCAGTTTATATGCTATTGT+TGG - chr1_3:20141772-20141791 Msa0108550:intron 25.0%
!!! GATTCATTTTTTTGATCAAC+TGG - chr1_3:20142256-20142275 Msa0108550:CDS 25.0%
!! TCTGAAATAGTCCAATTAAT+AGG - chr1_3:20142329-20142348 Msa0108550:CDS 25.0%
! CTGAAATAGTCCAATTAATA+GGG - chr1_3:20142330-20142349 Msa0108550:CDS 25.0%
! TGAAATAGTCCAATTAATAG+GGG - chr1_3:20142331-20142350 Msa0108550:CDS 25.0%
!! ACTTAAAAGTACAAAAGCTT+CGG + chr1_3:20142815-20142834 None:intergenic 25.0%
! ATGAGATATGCAAAAAACAA+AGG + chr1_3:20142893-20142912 None:intergenic 25.0%
!!! TTTGTTTTTTGCATATCTCA+TGG - chr1_3:20142892-20142911 Msa0108550:CDS 25.0%
!!! TTGTTTTTTGCATATCTCAT+GGG - chr1_3:20142893-20142912 Msa0108550:CDS 25.0%
! TTGGAAGCTATAAAGAAAAA+CGG + chr1_3:20142938-20142957 None:intergenic 25.0%
! TTCCAATAGTATTTCTTGTA+TGG - chr1_3:20142952-20142971 Msa0108550:intron 25.0%
! TTAAATAAATCAAGAGACAC+AGG - chr1_3:20142983-20143002 Msa0108550:intron 25.0%
! CAAAACAATGACTTATTTGA+GGG - chr1_3:20143084-20143103 Msa0108550:intron 25.0%
!! AGAGGATTTTCATATGAAAT+TGG - chr1_3:20143295-20143314 Msa0108550:intron 25.0%
! ATATGAAATTGGATGTTGAA+AGG - chr1_3:20143306-20143325 Msa0108550:intron 25.0%
! TATGAAATTGGATGTTGAAA+GGG - chr1_3:20143307-20143326 Msa0108550:intron 25.0%
! ATGAAAATAACAGGAGAATA+TGG - chr1_3:20143342-20143361 Msa0108550:intron 25.0%
!! GTAGATGCTATTGAAATTTT+AGG - chr1_3:20143541-20143560 Msa0108550:intron 25.0%
!!! AATTTTAGGAATCAGATGTA+AGG - chr1_3:20143555-20143574 Msa0108550:CDS 25.0%
!! AAAATATTAGTCTACTAACG+AGG - chr1_3:20143609-20143628 Msa0108550:CDS 25.0%
!!! TTGTTGAATAAAAGGTGTTT+AGG - chr1_3:20143722-20143741 Msa0108550:intron 25.0%
! AGGAAAATATAGACTAAAGT+AGG - chr1_3:20143742-20143761 Msa0108550:intron 25.0%
!! TTTTCCTAAATCTAATAGCA+AGG - chr1_3:20143863-20143882 Msa0108550:intron 25.0%
! CTAGAATGAGTGAAATAAAA+TGG - chr1_3:20143908-20143927 Msa0108550:intron 25.0%
!! TTTAGTAGGATAGGATTTTT+AGG - chr1_3:20143935-20143954 Msa0108550:intron 25.0%
! ATAAATCAAGGATCAGTATA+TGG + chr1_3:20144241-20144260 None:intergenic 25.0%
! CACTAAATAAAATTGAAAGG+GGG - chr1_3:20144616-20144635 Msa0108550:intron 25.0%
!!! TAATTTGCAATTTTTGGTGT+TGG - chr1_3:20144684-20144703 Msa0108550:intron 25.0%
! GATCAAATCAAATAAATAGC+AGG + chr1_3:20144802-20144821 None:intergenic 25.0%
!!! TATTTGATTTGATCTTAAGG+TGG - chr1_3:20144808-20144827 Msa0108550:intron 25.0%
!! TTTGTAAACTTGGATTTTGA+TGG - chr1_3:20144939-20144958 Msa0108550:intron 25.0%
! AAATGGCTTTCTATTATGAT+TGG - chr1_3:20145153-20145172 Msa0108550:intron 25.0%
!!! CAAATGCATTGTTTTTTCTT+AGG - chr1_3:20145204-20145223 Msa0108550:intron 25.0%
! TAGAATGTTCAAATATTTGG+TGG + chr1_3:20145264-20145283 None:intergenic 25.0%
! TCAAAGAGAATATGGCATTT+TGG - chr1_3:20137500-20137519 Msa0108550:three_prime_UTR 30.0%
!! TTTTGCCAAGTTTTAGTCTT+TGG + chr1_3:20137623-20137642 None:intergenic 30.0%
TGTTTAGTCACTGCAAATAT+GGG + chr1_3:20137686-20137705 None:intergenic 30.0%
ATGTTTAGTCACTGCAAATA+TGG + chr1_3:20137687-20137706 None:intergenic 30.0%
TGTATGAAAGTTTGTGTAGT+CGG + chr1_3:20137808-20137827 None:intergenic 30.0%
!! AAGGTTTTTAACTAATGTCC+CGG - chr1_3:20137840-20137859 Msa0108550:intron 30.0%
AAAATGTTAACTAATGTCCC+CGG + chr1_3:20137862-20137881 None:intergenic 30.0%
TGAACTAATCTCAATTGGTA+AGG + chr1_3:20138267-20138286 None:intergenic 30.0%
TCTTGTGAACTAATCTCAAT+TGG + chr1_3:20138272-20138291 None:intergenic 30.0%
!!! CTTTTTTTAGACAACTGACT+AGG - chr1_3:20138293-20138312 Msa0108550:intron 30.0%
AGAAAAAGGTTATGTTGTTG+CGG - chr1_3:20138489-20138508 Msa0108550:intron 30.0%
!!! GAATTATTTTTGTTGACTGG+AGG - chr1_3:20138517-20138536 Msa0108550:intron 30.0%
ACAAAAATACCCAAAACAAG+AGG + chr1_3:20138607-20138626 None:intergenic 30.0%
GGTTAAAGAGATCTTAATTG+AGG - chr1_3:20139039-20139058 Msa0108550:intron 30.0%
!!! CTAATGAAACTTTTTCAGAC+CGG - chr1_3:20139130-20139149 Msa0108550:intron 30.0%
ATGTTATGTATTGTTGGATC+TGG - chr1_3:20139207-20139226 Msa0108550:intron 30.0%
TGTTATGTATTGTTGGATCT+GGG - chr1_3:20139208-20139227 Msa0108550:intron 30.0%
!!! TGTGTTGCTTAATGTGTTTT+AGG - chr1_3:20139266-20139285 Msa0108550:intron 30.0%
!!! GTGTTGCTTAATGTGTTTTA+GGG - chr1_3:20139267-20139286 Msa0108550:intron 30.0%
TGTGACTTTGAGTAATATTG+AGG - chr1_3:20139395-20139414 Msa0108550:intron 30.0%
TCTAATTTATTGGTCGTGTT+TGG - chr1_3:20139440-20139459 Msa0108550:intron 30.0%
CAATACACAATTGACAATGT+TGG + chr1_3:20139996-20140015 None:intergenic 30.0%
TTGTGTATTGCAAAAAGTAG+CGG - chr1_3:20140006-20140025 Msa0108550:intron 30.0%
! TTCTCATCTCTAGTTTCTAA+TGG + chr1_3:20140320-20140339 None:intergenic 30.0%
! TTAATATTTTGCCAGGTCTA+TGG - chr1_3:20140371-20140390 Msa0108550:intron 30.0%
TGTAAGATAGTCGAAAACAT+CGG + chr1_3:20140453-20140472 None:intergenic 30.0%
ACACTTTCTGCAATTATAGA+TGG - chr1_3:20140470-20140489 Msa0108550:intron 30.0%
TATTATACTATGGTCCTGTT+TGG - chr1_3:20140743-20140762 Msa0108550:CDS 30.0%
ACAATAAGTGCTTGTGTTAT+AGG + chr1_3:20140789-20140808 None:intergenic 30.0%
! ACTGTTTTCATTAGCTATCT+TGG - chr1_3:20140890-20140909 Msa0108550:intron 30.0%
TAGCTATCTTGGAGAATTTA+TGG - chr1_3:20140901-20140920 Msa0108550:intron 30.0%
AGTTATTCCAAATGCACTTA+GGG + chr1_3:20141029-20141048 None:intergenic 30.0%
AAGTTATTCCAAATGCACTT+AGG + chr1_3:20141030-20141049 None:intergenic 30.0%
AGTCATTATACATTGCAAGT+TGG + chr1_3:20141145-20141164 None:intergenic 30.0%
! TTTATTCTAGGAAATCAGAG+AGG - chr1_3:20141375-20141394 Msa0108550:intron 30.0%
! AACATGTTTTCAAACCAAAC+AGG + chr1_3:20141413-20141432 None:intergenic 30.0%
ATCCTGAAGATATTGAAACA+TGG - chr1_3:20141965-20141984 Msa0108550:intron 30.0%
TCCTGAAGATATTGAAACAT+GGG - chr1_3:20141966-20141985 Msa0108550:intron 30.0%
! ATTGAATTGAGCTTTATGTG+TGG - chr1_3:20142068-20142087 Msa0108550:intron 30.0%
! TTGAATTGAGCTTTATGTGT+GGG - chr1_3:20142069-20142088 Msa0108550:intron 30.0%
AAGTACATGTTCCAAGATAA+AGG - chr1_3:20142182-20142201 Msa0108550:intron 30.0%
GTCATGTTAAAAGACTATAG+AGG - chr1_3:20142300-20142319 Msa0108550:CDS 30.0%
GAAATAGTCCAATTAATAGG+GGG - chr1_3:20142332-20142351 Msa0108550:CDS 30.0%
AAATAGTCCAATTAATAGGG+GGG - chr1_3:20142333-20142352 Msa0108550:intron 30.0%
TCTTTATGGGATAAGATTGA+GGG + chr1_3:20142509-20142528 None:intergenic 30.0%
ATCTTTATGGGATAAGATTG+AGG + chr1_3:20142510-20142529 None:intergenic 30.0%
TCTTATCCCATAAAGATCTA+AGG - chr1_3:20142513-20142532 Msa0108550:intron 30.0%
CTTATCCCATAAAGATCTAA+GGG - chr1_3:20142514-20142533 Msa0108550:intron 30.0%
ATTCACCCTTAGATCTTTAT+GGG + chr1_3:20142522-20142541 None:intergenic 30.0%
TATTCACCCTTAGATCTTTA+TGG + chr1_3:20142523-20142542 None:intergenic 30.0%
!! CATCTAAATGGATTAGTCAA+TGG + chr1_3:20142596-20142615 None:intergenic 30.0%
! CATTGACTAATCCATTTAGA+TGG - chr1_3:20142594-20142613 Msa0108550:intron 30.0%
CTCTTTATTCCTATAGTTGT+TGG - chr1_3:20143017-20143036 Msa0108550:intron 30.0%
CTCTAAATTCCAACAACTAT+AGG + chr1_3:20143029-20143048 None:intergenic 30.0%
CTATAGTTGTTGGAATTTAG+AGG - chr1_3:20143027-20143046 Msa0108550:intron 30.0%
GCAAAACAATGACTTATTTG+AGG - chr1_3:20143083-20143102 Msa0108550:intron 30.0%
TTCTTCGTAGTTCAAAATGA+CGG - chr1_3:20143261-20143280 Msa0108550:intron 30.0%
TCATTAGGGATGAAAATAAC+AGG - chr1_3:20143333-20143352 Msa0108550:intron 30.0%
ATATATCATGATATGTCCTG+AGG - chr1_3:20143421-20143440 Msa0108550:CDS 30.0%
AAATGAGATGTAGATGTAGA+TGG - chr1_3:20143578-20143597 Msa0108550:CDS 30.0%
GACCAAAGTTGTTGAATAAA+AGG - chr1_3:20143714-20143733 Msa0108550:intron 30.0%
! CACCTTTTATTCAACAACTT+TGG + chr1_3:20143719-20143738 None:intergenic 30.0%
TTTAGGAAAATCTGATCACT+GGG + chr1_3:20143853-20143872 None:intergenic 30.0%
ATTTAGGAAAATCTGATCAC+TGG + chr1_3:20143854-20143873 None:intergenic 30.0%
!! AGATCCTTGCTATTAGATTT+AGG + chr1_3:20143870-20143889 None:intergenic 30.0%
TCTAATAGCAAGGATCTATT+TGG - chr1_3:20143873-20143892 Msa0108550:intron 30.0%
!!! AATGGCTATTTTAGTAGGAT+AGG - chr1_3:20143926-20143945 Msa0108550:intron 30.0%
GGAAAGATCGAAGATTAAAT+AGG - chr1_3:20144041-20144060 Msa0108550:intron 30.0%
! AACAAATGTAGTCACGATTT+TGG - chr1_3:20144102-20144121 Msa0108550:intron 30.0%
! TCTTCCAATTTTTCACACAT+CGG + chr1_3:20144162-20144181 None:intergenic 30.0%
TTTACTCAATAAGAGAGTGA+AGG - chr1_3:20144452-20144471 Msa0108550:intron 30.0%
TTGTAGTGAAGGATCTAAAT+AGG + chr1_3:20144516-20144535 None:intergenic 30.0%
ATAGATATCACTTGTAGTGA+AGG + chr1_3:20144527-20144546 None:intergenic 30.0%
TTGTGTGTTGAAACATTTGT+CGG - chr1_3:20144881-20144900 Msa0108550:intron 30.0%
ACATGTGATCTTTGTAAACT+TGG - chr1_3:20144929-20144948 Msa0108550:intron 30.0%
! CTTATATGTTCCTAGCATTT+TGG - chr1_3:20144973-20144992 Msa0108550:intron 30.0%
TGTTACAAGAAAACATCCAA+GGG + chr1_3:20145006-20145025 None:intergenic 30.0%
! TAAGTTTTTCACTGAAACAG+AGG - chr1_3:20145038-20145057 Msa0108550:intron 30.0%
!!! TTTTGTCATTTTTCATCGTG+AGG + chr1_3:20145336-20145355 None:intergenic 30.0%
! TCAAAGAGAATATGGCATTT+TGG - chr1_3:20137500-20137519 Msa0108550:three_prime_UTR 30.0%
!! TTTTGCCAAGTTTTAGTCTT+TGG + chr1_3:20137623-20137642 None:intergenic 30.0%
TGTTTAGTCACTGCAAATAT+GGG + chr1_3:20137686-20137705 None:intergenic 30.0%
ATGTTTAGTCACTGCAAATA+TGG + chr1_3:20137687-20137706 None:intergenic 30.0%
TGTATGAAAGTTTGTGTAGT+CGG + chr1_3:20137808-20137827 None:intergenic 30.0%
!! AAGGTTTTTAACTAATGTCC+CGG - chr1_3:20137840-20137859 Msa0108550:intron 30.0%
AAAATGTTAACTAATGTCCC+CGG + chr1_3:20137862-20137881 None:intergenic 30.0%
TGAACTAATCTCAATTGGTA+AGG + chr1_3:20138267-20138286 None:intergenic 30.0%
TCTTGTGAACTAATCTCAAT+TGG + chr1_3:20138272-20138291 None:intergenic 30.0%
!!! CTTTTTTTAGACAACTGACT+AGG - chr1_3:20138293-20138312 Msa0108550:intron 30.0%
AGAAAAAGGTTATGTTGTTG+CGG - chr1_3:20138489-20138508 Msa0108550:intron 30.0%
!!! GAATTATTTTTGTTGACTGG+AGG - chr1_3:20138517-20138536 Msa0108550:intron 30.0%
ACAAAAATACCCAAAACAAG+AGG + chr1_3:20138607-20138626 None:intergenic 30.0%
GGTTAAAGAGATCTTAATTG+AGG - chr1_3:20139039-20139058 Msa0108550:intron 30.0%
!!! CTAATGAAACTTTTTCAGAC+CGG - chr1_3:20139130-20139149 Msa0108550:intron 30.0%
ATGTTATGTATTGTTGGATC+TGG - chr1_3:20139207-20139226 Msa0108550:intron 30.0%
TGTTATGTATTGTTGGATCT+GGG - chr1_3:20139208-20139227 Msa0108550:intron 30.0%
!!! TGTGTTGCTTAATGTGTTTT+AGG - chr1_3:20139266-20139285 Msa0108550:intron 30.0%
!!! GTGTTGCTTAATGTGTTTTA+GGG - chr1_3:20139267-20139286 Msa0108550:intron 30.0%
TGTGACTTTGAGTAATATTG+AGG - chr1_3:20139395-20139414 Msa0108550:intron 30.0%
TCTAATTTATTGGTCGTGTT+TGG - chr1_3:20139440-20139459 Msa0108550:intron 30.0%
CAATACACAATTGACAATGT+TGG + chr1_3:20139996-20140015 None:intergenic 30.0%
TTGTGTATTGCAAAAAGTAG+CGG - chr1_3:20140006-20140025 Msa0108550:intron 30.0%
! TTCTCATCTCTAGTTTCTAA+TGG + chr1_3:20140320-20140339 None:intergenic 30.0%
! TTAATATTTTGCCAGGTCTA+TGG - chr1_3:20140371-20140390 Msa0108550:intron 30.0%
TGTAAGATAGTCGAAAACAT+CGG + chr1_3:20140453-20140472 None:intergenic 30.0%
ACACTTTCTGCAATTATAGA+TGG - chr1_3:20140470-20140489 Msa0108550:intron 30.0%
TATTATACTATGGTCCTGTT+TGG - chr1_3:20140743-20140762 Msa0108550:CDS 30.0%
ACAATAAGTGCTTGTGTTAT+AGG + chr1_3:20140789-20140808 None:intergenic 30.0%
! ACTGTTTTCATTAGCTATCT+TGG - chr1_3:20140890-20140909 Msa0108550:intron 30.0%
TAGCTATCTTGGAGAATTTA+TGG - chr1_3:20140901-20140920 Msa0108550:intron 30.0%
AGTTATTCCAAATGCACTTA+GGG + chr1_3:20141029-20141048 None:intergenic 30.0%
AAGTTATTCCAAATGCACTT+AGG + chr1_3:20141030-20141049 None:intergenic 30.0%
AGTCATTATACATTGCAAGT+TGG + chr1_3:20141145-20141164 None:intergenic 30.0%
! TTTATTCTAGGAAATCAGAG+AGG - chr1_3:20141375-20141394 Msa0108550:intron 30.0%
! AACATGTTTTCAAACCAAAC+AGG + chr1_3:20141413-20141432 None:intergenic 30.0%
ATCCTGAAGATATTGAAACA+TGG - chr1_3:20141965-20141984 Msa0108550:intron 30.0%
TCCTGAAGATATTGAAACAT+GGG - chr1_3:20141966-20141985 Msa0108550:intron 30.0%
! ATTGAATTGAGCTTTATGTG+TGG - chr1_3:20142068-20142087 Msa0108550:intron 30.0%
! TTGAATTGAGCTTTATGTGT+GGG - chr1_3:20142069-20142088 Msa0108550:intron 30.0%
AAGTACATGTTCCAAGATAA+AGG - chr1_3:20142182-20142201 Msa0108550:intron 30.0%
GTCATGTTAAAAGACTATAG+AGG - chr1_3:20142300-20142319 Msa0108550:CDS 30.0%
GAAATAGTCCAATTAATAGG+GGG - chr1_3:20142332-20142351 Msa0108550:CDS 30.0%
AAATAGTCCAATTAATAGGG+GGG - chr1_3:20142333-20142352 Msa0108550:intron 30.0%
TCTTTATGGGATAAGATTGA+GGG + chr1_3:20142509-20142528 None:intergenic 30.0%
ATCTTTATGGGATAAGATTG+AGG + chr1_3:20142510-20142529 None:intergenic 30.0%
TCTTATCCCATAAAGATCTA+AGG - chr1_3:20142513-20142532 Msa0108550:intron 30.0%
CTTATCCCATAAAGATCTAA+GGG - chr1_3:20142514-20142533 Msa0108550:intron 30.0%
ATTCACCCTTAGATCTTTAT+GGG + chr1_3:20142522-20142541 None:intergenic 30.0%
TATTCACCCTTAGATCTTTA+TGG + chr1_3:20142523-20142542 None:intergenic 30.0%
!! CATCTAAATGGATTAGTCAA+TGG + chr1_3:20142596-20142615 None:intergenic 30.0%
! CATTGACTAATCCATTTAGA+TGG - chr1_3:20142594-20142613 Msa0108550:intron 30.0%
CTCTTTATTCCTATAGTTGT+TGG - chr1_3:20143017-20143036 Msa0108550:intron 30.0%
CTCTAAATTCCAACAACTAT+AGG + chr1_3:20143029-20143048 None:intergenic 30.0%
CTATAGTTGTTGGAATTTAG+AGG - chr1_3:20143027-20143046 Msa0108550:intron 30.0%
GCAAAACAATGACTTATTTG+AGG - chr1_3:20143083-20143102 Msa0108550:intron 30.0%
TTCTTCGTAGTTCAAAATGA+CGG - chr1_3:20143261-20143280 Msa0108550:intron 30.0%
TCATTAGGGATGAAAATAAC+AGG - chr1_3:20143333-20143352 Msa0108550:intron 30.0%
ATATATCATGATATGTCCTG+AGG - chr1_3:20143421-20143440 Msa0108550:CDS 30.0%
AAATGAGATGTAGATGTAGA+TGG - chr1_3:20143578-20143597 Msa0108550:CDS 30.0%
GACCAAAGTTGTTGAATAAA+AGG - chr1_3:20143714-20143733 Msa0108550:intron 30.0%
! CACCTTTTATTCAACAACTT+TGG + chr1_3:20143719-20143738 None:intergenic 30.0%
TTTAGGAAAATCTGATCACT+GGG + chr1_3:20143853-20143872 None:intergenic 30.0%
ATTTAGGAAAATCTGATCAC+TGG + chr1_3:20143854-20143873 None:intergenic 30.0%
!! AGATCCTTGCTATTAGATTT+AGG + chr1_3:20143870-20143889 None:intergenic 30.0%
TCTAATAGCAAGGATCTATT+TGG - chr1_3:20143873-20143892 Msa0108550:intron 30.0%
!!! AATGGCTATTTTAGTAGGAT+AGG - chr1_3:20143926-20143945 Msa0108550:intron 30.0%
GGAAAGATCGAAGATTAAAT+AGG - chr1_3:20144041-20144060 Msa0108550:intron 30.0%
! AACAAATGTAGTCACGATTT+TGG - chr1_3:20144102-20144121 Msa0108550:intron 30.0%
! TCTTCCAATTTTTCACACAT+CGG + chr1_3:20144162-20144181 None:intergenic 30.0%
TTTACTCAATAAGAGAGTGA+AGG - chr1_3:20144452-20144471 Msa0108550:intron 30.0%
TTGTAGTGAAGGATCTAAAT+AGG + chr1_3:20144516-20144535 None:intergenic 30.0%
ATAGATATCACTTGTAGTGA+AGG + chr1_3:20144527-20144546 None:intergenic 30.0%
TTGTGTGTTGAAACATTTGT+CGG - chr1_3:20144881-20144900 Msa0108550:intron 30.0%
ACATGTGATCTTTGTAAACT+TGG - chr1_3:20144929-20144948 Msa0108550:intron 30.0%
! CTTATATGTTCCTAGCATTT+TGG - chr1_3:20144973-20144992 Msa0108550:intron 30.0%
TGTTACAAGAAAACATCCAA+GGG + chr1_3:20145006-20145025 None:intergenic 30.0%
! TAAGTTTTTCACTGAAACAG+AGG - chr1_3:20145038-20145057 Msa0108550:intron 30.0%
!!! TTTTGTCATTTTTCATCGTG+AGG + chr1_3:20145336-20145355 None:intergenic 30.0%
ACAACTGGTGTAGCTATTTA+TGG - chr1_3:20137348-20137367 Msa0108550:intron 35.0%
CAACTGGTGTAGCTATTTAT+GGG - chr1_3:20137349-20137368 Msa0108550:intron 35.0%
AAAGAGGATGCTTGAATTGA+AGG - chr1_3:20137467-20137486 Msa0108550:three_prime_UTR 35.0%
CTTGAATTGAAGGAAGAAGA+AGG - chr1_3:20137477-20137496 Msa0108550:three_prime_UTR 35.0%
GAAGAAGGTCAAAGAGAATA+TGG - chr1_3:20137492-20137511 Msa0108550:three_prime_UTR 35.0%
! GTGTTGTTAACTGAGATAAG+TGG + chr1_3:20137556-20137575 None:intergenic 35.0%
CTTATCTCAGTTAACAACAC+TGG - chr1_3:20137556-20137575 Msa0108550:three_prime_UTR 35.0%
TGAGTCCAAAGACTAAAACT+TGG - chr1_3:20137615-20137634 Msa0108550:exon 35.0%
!! AGGTTTTTAACTAATGTCCC+GGG - chr1_3:20137841-20137860 Msa0108550:intron 35.0%
AAATGTTAACTAATGTCCCC+GGG + chr1_3:20137861-20137880 None:intergenic 35.0%
GACAATGCAAAGTATATGCA+AGG + chr1_3:20138245-20138264 None:intergenic 35.0%
GAGAAACGAAAAGTGAGATA+TGG - chr1_3:20138664-20138683 Msa0108550:intron 35.0%
CGAAAAGTGAGATATGGATT+TGG - chr1_3:20138670-20138689 Msa0108550:intron 35.0%
!!! TCTCTCGCTTTCACTTTTTA+GGG - chr1_3:20138779-20138798 Msa0108550:intron 35.0%
!! ATTATCGTTAGGGCTTTGTT+TGG - chr1_3:20138877-20138896 Msa0108550:intron 35.0%
AATAGTCCAGTAACTGTTTG+TGG - chr1_3:20139082-20139101 Msa0108550:intron 35.0%
!! AGCTTTAAGAAGCAAAAGGA+TGG + chr1_3:20139334-20139353 None:intergenic 35.0%
! TCCTTTTGCTTCTTAAAGCT+AGG - chr1_3:20139334-20139353 Msa0108550:intron 35.0%
!! ACCTAGCTTTAAGAAGCAAA+AGG + chr1_3:20139338-20139357 None:intergenic 35.0%
TTGTATATGTGTCTGTGTCA+GGG + chr1_3:20139474-20139493 None:intergenic 35.0%
!! TTGCTTCTTTGTTGTTGTTG+TGG - chr1_3:20139619-20139638 Msa0108550:intron 35.0%
GTAGAAGGGTTATATTAGCA+GGG + chr1_3:20139822-20139841 None:intergenic 35.0%
CAATATTGCAATGTTGCACA+TGG - chr1_3:20140273-20140292 Msa0108550:intron 35.0%
CATCATAAAATCCATAGACC+TGG + chr1_3:20140385-20140404 None:intergenic 35.0%
TAGCATTTCCATACTTTCTC+TGG + chr1_3:20140412-20140431 None:intergenic 35.0%
AGTATGGAAATGCTAATGCT+TGG - chr1_3:20140417-20140436 Msa0108550:intron 35.0%
CGTAACTCTCTTATATGCTA+TGG - chr1_3:20140603-20140622 Msa0108550:intron 35.0%
! TTATACATTGCAAGTTGGCA+TGG + chr1_3:20141140-20141159 None:intergenic 35.0%
GGTTTACATACACAATGTCA+AGG + chr1_3:20141214-20141233 None:intergenic 35.0%
CCTACACAGATCTTAATATC+AGG + chr1_3:20141500-20141519 None:intergenic 35.0%
CCTGATATTAAGATCTGTGT+AGG - chr1_3:20141497-20141516 Msa0108550:intron 35.0%
AGATCTGTGTAGGAATAATC+AGG - chr1_3:20141507-20141526 Msa0108550:intron 35.0%
GATCTGTGTAGGAATAATCA+GGG - chr1_3:20141508-20141527 Msa0108550:intron 35.0%
GTACAGCAAAATGAAACTGA+AGG + chr1_3:20141625-20141644 None:intergenic 35.0%
!! TTCATTTTGCTGTACCTGTT+TGG - chr1_3:20141630-20141649 Msa0108550:intron 35.0%
CTCCACATAAGATCACAAAA+TGG + chr1_3:20141943-20141962 None:intergenic 35.0%
! TTACATCTGAGGTAATGTCA+TGG - chr1_3:20142031-20142050 Msa0108550:intron 35.0%
TTCAGATGCTTACAGTTACA+AGG + chr1_3:20142208-20142227 None:intergenic 35.0%
!!! TTTGATCAACTGGTCTTTTG+AGG - chr1_3:20142266-20142285 Msa0108550:CDS 35.0%
AATAGTCCAATTAATAGGGG+GGG - chr1_3:20142334-20142353 Msa0108550:intron 35.0%
TCTGTAAATTGAGCTAGTGT+GGG + chr1_3:20142548-20142567 None:intergenic 35.0%
TACAGACAAATCACTTGAGA+AGG - chr1_3:20142562-20142581 Msa0108550:intron 35.0%
ACAGACAAATCACTTGAGAA+GGG - chr1_3:20142563-20142582 Msa0108550:intron 35.0%
CCACAACGGTAACAATAATT+AGG + chr1_3:20142746-20142765 None:intergenic 35.0%
CCTAATTATTGTTACCGTTG+TGG - chr1_3:20142743-20142762 Msa0108550:intron 35.0%
TAGAAGCTACATTTCCACAA+CGG + chr1_3:20142760-20142779 None:intergenic 35.0%
GTCTTGATTGTTGCATCATT+TGG - chr1_3:20142849-20142868 Msa0108550:intron 35.0%
GGCCATACAAGAAATACTAT+TGG + chr1_3:20142957-20142976 None:intergenic 35.0%
AATAAATCAAGAGACACAGG+AGG - chr1_3:20142986-20143005 Msa0108550:intron 35.0%
TGACTTATTTGAGGGATAGT+TGG - chr1_3:20143092-20143111 Msa0108550:intron 35.0%
TACATGTGTTCCAACTGTAA+TGG + chr1_3:20143123-20143142 None:intergenic 35.0%
GTCAGATTGTCAGTTACATA+CGG - chr1_3:20143153-20143172 Msa0108550:intron 35.0%
TCAGATTGTCAGTTACATAC+GGG - chr1_3:20143154-20143173 Msa0108550:intron 35.0%
ACCAGTATATATCATGTACC+CGG - chr1_3:20143208-20143227 Msa0108550:intron 35.0%
! ATGACGGCTTTAATGTTAAG+AGG - chr1_3:20143277-20143296 Msa0108550:intron 35.0%
!! AGGATTTTTAGGCAACTGAA+TGG - chr1_3:20143946-20143965 Msa0108550:intron 35.0%
GGTAAAACACCAATAAGCTT+AGG - chr1_3:20143967-20143986 Msa0108550:intron 35.0%
! CTTCCAATTTTTCACACATC+GGG + chr1_3:20144161-20144180 None:intergenic 35.0%
! GAGTGCTAAAAAGTGTGTAT+AGG + chr1_3:20144352-20144371 None:intergenic 35.0%
AATAGGTTAGAGGAGTGATA+TGG + chr1_3:20144499-20144518 None:intergenic 35.0%
GAAGGATCTAAATAGGTTAG+AGG + chr1_3:20144509-20144528 None:intergenic 35.0%
!!! ACACAACTGCTTTTTGAGTT+GGG - chr1_3:20144557-20144576 Msa0108550:intron 35.0%
!!! TTTTTGGTGTTGGTGATAGT+TGG - chr1_3:20144694-20144713 Msa0108550:intron 35.0%
!!! TTTTGGTGTTGGTGATAGTT+GGG - chr1_3:20144695-20144714 Msa0108550:intron 35.0%
TAAGGTGGTAAATGTAGTGT+CGG - chr1_3:20144823-20144842 Msa0108550:intron 35.0%
AATGCTAGGAACATATAAGC+AGG + chr1_3:20144972-20144991 None:intergenic 35.0%
CTGTTACAAGAAAACATCCA+AGG + chr1_3:20145007-20145026 None:intergenic 35.0%
! CTTGGATGTTTTCTTGTAAC+AGG - chr1_3:20145005-20145024 Msa0108550:intron 35.0%
ACAGTGTTAGTCATGTATTG+TGG - chr1_3:20145176-20145195 Msa0108550:intron 35.0%
ACAACTGGTGTAGCTATTTA+TGG - chr1_3:20137348-20137367 Msa0108550:intron 35.0%
CAACTGGTGTAGCTATTTAT+GGG - chr1_3:20137349-20137368 Msa0108550:intron 35.0%
AAAGAGGATGCTTGAATTGA+AGG - chr1_3:20137467-20137486 Msa0108550:three_prime_UTR 35.0%
CTTGAATTGAAGGAAGAAGA+AGG - chr1_3:20137477-20137496 Msa0108550:three_prime_UTR 35.0%
GAAGAAGGTCAAAGAGAATA+TGG - chr1_3:20137492-20137511 Msa0108550:three_prime_UTR 35.0%
! GTGTTGTTAACTGAGATAAG+TGG + chr1_3:20137556-20137575 None:intergenic 35.0%
CTTATCTCAGTTAACAACAC+TGG - chr1_3:20137556-20137575 Msa0108550:three_prime_UTR 35.0%
TGAGTCCAAAGACTAAAACT+TGG - chr1_3:20137615-20137634 Msa0108550:exon 35.0%
!! AGGTTTTTAACTAATGTCCC+GGG - chr1_3:20137841-20137860 Msa0108550:intron 35.0%
AAATGTTAACTAATGTCCCC+GGG + chr1_3:20137861-20137880 None:intergenic 35.0%
GACAATGCAAAGTATATGCA+AGG + chr1_3:20138245-20138264 None:intergenic 35.0%
GAGAAACGAAAAGTGAGATA+TGG - chr1_3:20138664-20138683 Msa0108550:intron 35.0%
CGAAAAGTGAGATATGGATT+TGG - chr1_3:20138670-20138689 Msa0108550:intron 35.0%
!!! TCTCTCGCTTTCACTTTTTA+GGG - chr1_3:20138779-20138798 Msa0108550:intron 35.0%
!! ATTATCGTTAGGGCTTTGTT+TGG - chr1_3:20138877-20138896 Msa0108550:intron 35.0%
AATAGTCCAGTAACTGTTTG+TGG - chr1_3:20139082-20139101 Msa0108550:intron 35.0%
!! AGCTTTAAGAAGCAAAAGGA+TGG + chr1_3:20139334-20139353 None:intergenic 35.0%
! TCCTTTTGCTTCTTAAAGCT+AGG - chr1_3:20139334-20139353 Msa0108550:intron 35.0%
!! ACCTAGCTTTAAGAAGCAAA+AGG + chr1_3:20139338-20139357 None:intergenic 35.0%
TTGTATATGTGTCTGTGTCA+GGG + chr1_3:20139474-20139493 None:intergenic 35.0%
!! TTGCTTCTTTGTTGTTGTTG+TGG - chr1_3:20139619-20139638 Msa0108550:intron 35.0%
GTAGAAGGGTTATATTAGCA+GGG + chr1_3:20139822-20139841 None:intergenic 35.0%
CAATATTGCAATGTTGCACA+TGG - chr1_3:20140273-20140292 Msa0108550:intron 35.0%
CATCATAAAATCCATAGACC+TGG + chr1_3:20140385-20140404 None:intergenic 35.0%
TAGCATTTCCATACTTTCTC+TGG + chr1_3:20140412-20140431 None:intergenic 35.0%
AGTATGGAAATGCTAATGCT+TGG - chr1_3:20140417-20140436 Msa0108550:intron 35.0%
CGTAACTCTCTTATATGCTA+TGG - chr1_3:20140603-20140622 Msa0108550:intron 35.0%
! TTATACATTGCAAGTTGGCA+TGG + chr1_3:20141140-20141159 None:intergenic 35.0%
GGTTTACATACACAATGTCA+AGG + chr1_3:20141214-20141233 None:intergenic 35.0%
CCTACACAGATCTTAATATC+AGG + chr1_3:20141500-20141519 None:intergenic 35.0%
CCTGATATTAAGATCTGTGT+AGG - chr1_3:20141497-20141516 Msa0108550:intron 35.0%
AGATCTGTGTAGGAATAATC+AGG - chr1_3:20141507-20141526 Msa0108550:intron 35.0%
GATCTGTGTAGGAATAATCA+GGG - chr1_3:20141508-20141527 Msa0108550:intron 35.0%
GTACAGCAAAATGAAACTGA+AGG + chr1_3:20141625-20141644 None:intergenic 35.0%
!! TTCATTTTGCTGTACCTGTT+TGG - chr1_3:20141630-20141649 Msa0108550:intron 35.0%
CTCCACATAAGATCACAAAA+TGG + chr1_3:20141943-20141962 None:intergenic 35.0%
! TTACATCTGAGGTAATGTCA+TGG - chr1_3:20142031-20142050 Msa0108550:intron 35.0%
TTCAGATGCTTACAGTTACA+AGG + chr1_3:20142208-20142227 None:intergenic 35.0%
!!! TTTGATCAACTGGTCTTTTG+AGG - chr1_3:20142266-20142285 Msa0108550:CDS 35.0%
AATAGTCCAATTAATAGGGG+GGG - chr1_3:20142334-20142353 Msa0108550:intron 35.0%
TCTGTAAATTGAGCTAGTGT+GGG + chr1_3:20142548-20142567 None:intergenic 35.0%
TACAGACAAATCACTTGAGA+AGG - chr1_3:20142562-20142581 Msa0108550:intron 35.0%
ACAGACAAATCACTTGAGAA+GGG - chr1_3:20142563-20142582 Msa0108550:intron 35.0%
CCACAACGGTAACAATAATT+AGG + chr1_3:20142746-20142765 None:intergenic 35.0%
CCTAATTATTGTTACCGTTG+TGG - chr1_3:20142743-20142762 Msa0108550:intron 35.0%
TAGAAGCTACATTTCCACAA+CGG + chr1_3:20142760-20142779 None:intergenic 35.0%
GTCTTGATTGTTGCATCATT+TGG - chr1_3:20142849-20142868 Msa0108550:intron 35.0%
GGCCATACAAGAAATACTAT+TGG + chr1_3:20142957-20142976 None:intergenic 35.0%
AATAAATCAAGAGACACAGG+AGG - chr1_3:20142986-20143005 Msa0108550:intron 35.0%
TGACTTATTTGAGGGATAGT+TGG - chr1_3:20143092-20143111 Msa0108550:intron 35.0%
TACATGTGTTCCAACTGTAA+TGG + chr1_3:20143123-20143142 None:intergenic 35.0%
GTCAGATTGTCAGTTACATA+CGG - chr1_3:20143153-20143172 Msa0108550:intron 35.0%
TCAGATTGTCAGTTACATAC+GGG - chr1_3:20143154-20143173 Msa0108550:intron 35.0%
ACCAGTATATATCATGTACC+CGG - chr1_3:20143208-20143227 Msa0108550:intron 35.0%
! ATGACGGCTTTAATGTTAAG+AGG - chr1_3:20143277-20143296 Msa0108550:intron 35.0%
!! AGGATTTTTAGGCAACTGAA+TGG - chr1_3:20143946-20143965 Msa0108550:intron 35.0%
GGTAAAACACCAATAAGCTT+AGG - chr1_3:20143967-20143986 Msa0108550:intron 35.0%
! CTTCCAATTTTTCACACATC+GGG + chr1_3:20144161-20144180 None:intergenic 35.0%
! GAGTGCTAAAAAGTGTGTAT+AGG + chr1_3:20144352-20144371 None:intergenic 35.0%
AATAGGTTAGAGGAGTGATA+TGG + chr1_3:20144499-20144518 None:intergenic 35.0%
GAAGGATCTAAATAGGTTAG+AGG + chr1_3:20144509-20144528 None:intergenic 35.0%
!!! ACACAACTGCTTTTTGAGTT+GGG - chr1_3:20144557-20144576 Msa0108550:intron 35.0%
!!! TTTTTGGTGTTGGTGATAGT+TGG - chr1_3:20144694-20144713 Msa0108550:intron 35.0%
!!! TTTTGGTGTTGGTGATAGTT+GGG - chr1_3:20144695-20144714 Msa0108550:intron 35.0%
TAAGGTGGTAAATGTAGTGT+CGG - chr1_3:20144823-20144842 Msa0108550:intron 35.0%
AATGCTAGGAACATATAAGC+AGG + chr1_3:20144972-20144991 None:intergenic 35.0%
CTGTTACAAGAAAACATCCA+AGG + chr1_3:20145007-20145026 None:intergenic 35.0%
! CTTGGATGTTTTCTTGTAAC+AGG - chr1_3:20145005-20145024 Msa0108550:intron 35.0%
ACAGTGTTAGTCATGTATTG+TGG - chr1_3:20145176-20145195 Msa0108550:intron 35.0%
! GATGATGATGAAGAAGACGA+CGG + chr1_3:20137380-20137399 None:intergenic 40.0%
TTGGACTCATAATCTCGTTG+AGG + chr1_3:20137604-20137623 None:intergenic 40.0%
AGTTTGTGTAGTCGGTACAT+TGG + chr1_3:20137800-20137819 None:intergenic 40.0%
!! GGTTTTTAACTAATGTCCCG+GGG - chr1_3:20137842-20137861 Msa0108550:intron 40.0%
TGCAAAGTATATGCAAGGTC+CGG + chr1_3:20138240-20138259 None:intergenic 40.0%
ATACCCAAAACAAGAGGAGA+AGG + chr1_3:20138601-20138620 None:intergenic 40.0%
GAGATATGGATTTGGACCAA+TGG - chr1_3:20138678-20138697 Msa0108550:intron 40.0%
CTTTAACCTTCGAGATCCAT+TGG + chr1_3:20138697-20138716 None:intergenic 40.0%
TGGATCTCGAAGGTTAAAGA+TGG - chr1_3:20138698-20138717 Msa0108550:intron 40.0%
!!! CTCTCTCGCTTTCACTTTTT+AGG - chr1_3:20138778-20138797 Msa0108550:intron 40.0%
ACAGTTACTGGACTATTCAC+AGG + chr1_3:20139079-20139098 None:intergenic 40.0%
ATGTCACCACAAACAGTTAC+TGG + chr1_3:20139091-20139110 None:intergenic 40.0%
ACTGTTTGTGGTGACATTCA+TGG - chr1_3:20139094-20139113 Msa0108550:intron 40.0%
!!! ATGAAACTTTTTCAGACCGG+TGG - chr1_3:20139133-20139152 Msa0108550:intron 40.0%
!!! TGAAACTTTTTCAGACCGGT+GGG - chr1_3:20139134-20139153 Msa0108550:intron 40.0%
GTTGTATATGTGTCTGTGTC+AGG + chr1_3:20139475-20139494 None:intergenic 40.0%
! CAAACCTTTTCCCACTAAGT+GGG + chr1_3:20139602-20139621 None:intergenic 40.0%
GTGTCTGACACTGATACTAT+TGG + chr1_3:20139656-20139675 None:intergenic 40.0%
ATAGTATCAGTGTCAGACAC+TGG - chr1_3:20139656-20139675 Msa0108550:intron 40.0%
AAACACCTACGTAGCATTGT+CGG + chr1_3:20139710-20139729 None:intergenic 40.0%
CGTAGAAGGGTTATATTAGC+AGG + chr1_3:20139823-20139842 None:intergenic 40.0%
GCTAATATAACCCTTCTACG+TGG - chr1_3:20139823-20139842 Msa0108550:intron 40.0%
TTCATGGTTTCCACGTAGAA+GGG + chr1_3:20139836-20139855 None:intergenic 40.0%
TTTCATGGTTTCCACGTAGA+AGG + chr1_3:20139837-20139856 None:intergenic 40.0%
GTGTGAGTTGTCTACTTTCA+TGG + chr1_3:20139852-20139871 None:intergenic 40.0%
TGAAAGTAGACAACTCACAC+AGG - chr1_3:20139852-20139871 Msa0108550:intron 40.0%
! TAGCGGTTTGTTCAAATTCC+CGG - chr1_3:20140023-20140042 Msa0108550:intron 40.0%
! TCTATAGGCCTTTTGTGATC+AGG - chr1_3:20140055-20140074 Msa0108550:intron 40.0%
ATTGCAATGTTGCACATGGT+AGG - chr1_3:20140277-20140296 Msa0108550:intron 40.0%
GATGAATGCCAGAGAAAGTA+TGG - chr1_3:20140401-20140420 Msa0108550:intron 40.0%
CACTGCTTAAATGTGAGTAG+GGG + chr1_3:20140543-20140562 None:intergenic 40.0%
GCACTGCTTAAATGTGAGTA+GGG + chr1_3:20140544-20140563 None:intergenic 40.0%
TGCACTGCTTAAATGTGAGT+AGG + chr1_3:20140545-20140564 None:intergenic 40.0%
TTGTTCTGATGTCTGGAGAA+AGG + chr1_3:20140658-20140677 None:intergenic 40.0%
TGGTCAATTGTTCTGATGTC+TGG + chr1_3:20140665-20140684 None:intergenic 40.0%
AGACATCAGAACAATTGACC+AGG - chr1_3:20140664-20140683 Msa0108550:intron 40.0%
AAATGCACTTAGGGCCTATT+TGG + chr1_3:20141020-20141039 None:intergenic 40.0%
AAATAGGCCCTAAGTGCATT+TGG - chr1_3:20141019-20141038 Msa0108550:intron 40.0%
AACATGTTGTGGTAAAAGGG+TGG + chr1_3:20141240-20141259 None:intergenic 40.0%
TCAGCCCTATTAACATGTTG+TGG + chr1_3:20141251-20141270 None:intergenic 40.0%
!! AATCAGAGAGGTATCAGCAA+TGG - chr1_3:20141387-20141406 Msa0108550:intron 40.0%
GACAGATAAGAGTCATTGAG+CGG - chr1_3:20141893-20141912 Msa0108550:intron 40.0%
AACTGTGAAATTCCTCACGA+GGG - chr1_3:20141916-20141935 Msa0108550:intron 40.0%
!! GGCCATTTTGTGATCTTATG+TGG - chr1_3:20141938-20141957 Msa0108550:intron 40.0%
GCCCATGTTTCAATATCTTC+AGG + chr1_3:20141970-20141989 None:intergenic 40.0%
ACATTACCTCAGATGTAACC+CGG + chr1_3:20142029-20142048 None:intergenic 40.0%
GCACATCAACTTGTACAAGA+AGG - chr1_3:20142155-20142174 Msa0108550:intron 40.0%
CAGTTACAAGGCCTTTATCT+TGG + chr1_3:20142196-20142215 None:intergenic 40.0%
TCGCTTACTTGAAACACTTC+GGG + chr1_3:20142370-20142389 None:intergenic 40.0%
CTCGCTTACTTGAAACACTT+CGG + chr1_3:20142371-20142390 None:intergenic 40.0%
CAAAATACTCAGAGAAGCTG+CGG + chr1_3:20142464-20142483 None:intergenic 40.0%
!!! GTATTTTGGAGTAGTTGTCG+TGG - chr1_3:20142476-20142495 Msa0108550:intron 40.0%
GTCTGTAAATTGAGCTAGTG+TGG + chr1_3:20142549-20142568 None:intergenic 40.0%
CAGATTGTCAGTTACATACG+GGG - chr1_3:20143155-20143174 Msa0108550:intron 40.0%
ACCGGGTACATGATATATAC+TGG + chr1_3:20143212-20143231 None:intergenic 40.0%
AGTATATATCATGTACCCGG+TGG - chr1_3:20143211-20143230 Msa0108550:intron 40.0%
GAAATTGGATGTTGAAAGGG+AGG - chr1_3:20143310-20143329 Msa0108550:intron 40.0%
ATGTTGAAAGGGAGGTCATT+AGG - chr1_3:20143318-20143337 Msa0108550:intron 40.0%
TGTTGAAAGGGAGGTCATTA+GGG - chr1_3:20143319-20143338 Msa0108550:intron 40.0%
! TGTTCACAGTTTAAAGCCTC+AGG + chr1_3:20143440-20143459 None:intergenic 40.0%
ATAAGTGACATGCTCAGACT+GGG - chr1_3:20143767-20143786 Msa0108550:intron 40.0%
CATAGTTGAAAACCTTCCCA+TGG + chr1_3:20143819-20143838 None:intergenic 40.0%
! AGGTTTTCAACTATGAGCTC+AGG - chr1_3:20143824-20143843 Msa0108550:intron 40.0%
ATAGCAAGGATCTATTTGGC+AGG - chr1_3:20143877-20143896 Msa0108550:intron 40.0%
TCTCTGTTGCCTAAGCTTAT+TGG + chr1_3:20143979-20143998 None:intergenic 40.0%
GCATCTGTGGACAATTTATG+AGG - chr1_3:20144009-20144028 Msa0108550:intron 40.0%
TCTGTGGACAATTTATGAGG+CGG - chr1_3:20144012-20144031 Msa0108550:intron 40.0%
TGCTGCAGAACTTAAACCAA+AGG - chr1_3:20144130-20144149 Msa0108550:intron 40.0%
ATGCCCGATGTGTGAAAAAT+TGG - chr1_3:20144155-20144174 Msa0108550:intron 40.0%
TTTAGCACTCACTCTCCTAT+TGG - chr1_3:20144362-20144381 Msa0108550:intron 40.0%
CTATTGGACGGAATTCATGT+GGG - chr1_3:20144378-20144397 Msa0108550:intron 40.0%
! TTTATGTAGGTACCGCACTT+TGG + chr1_3:20144431-20144450 None:intergenic 40.0%
AAAGCAGTTGTGTCTAGACA+AGG + chr1_3:20144550-20144569 None:intergenic 40.0%
!!! GACACAACTGCTTTTTGAGT+TGG - chr1_3:20144556-20144575 Msa0108550:intron 40.0%
!!! CACAACTGCTTTTTGAGTTG+GGG - chr1_3:20144558-20144577 Msa0108550:intron 40.0%
CAGCATAATTGTCGCCTTAA+CGG + chr1_3:20144737-20144756 None:intergenic 40.0%
AAGGTGGTAAATGTAGTGTC+GGG - chr1_3:20144824-20144843 Msa0108550:intron 40.0%
!! TGAAACATTTGTCGGTGTCA+TGG - chr1_3:20144889-20144908 Msa0108550:intron 40.0%
AGGAGAACAATCAGATGAGA+GGG - chr1_3:20145058-20145077 Msa0108550:intron 40.0%
AAATATGGAACACCTGTCCT+AGG + chr1_3:20145084-20145103 None:intergenic 40.0%
! GATGATGATGAAGAAGACGA+CGG + chr1_3:20137380-20137399 None:intergenic 40.0%
TTGGACTCATAATCTCGTTG+AGG + chr1_3:20137604-20137623 None:intergenic 40.0%
AGTTTGTGTAGTCGGTACAT+TGG + chr1_3:20137800-20137819 None:intergenic 40.0%
!! GGTTTTTAACTAATGTCCCG+GGG - chr1_3:20137842-20137861 Msa0108550:intron 40.0%
TGCAAAGTATATGCAAGGTC+CGG + chr1_3:20138240-20138259 None:intergenic 40.0%
ATACCCAAAACAAGAGGAGA+AGG + chr1_3:20138601-20138620 None:intergenic 40.0%
GAGATATGGATTTGGACCAA+TGG - chr1_3:20138678-20138697 Msa0108550:intron 40.0%
CTTTAACCTTCGAGATCCAT+TGG + chr1_3:20138697-20138716 None:intergenic 40.0%
TGGATCTCGAAGGTTAAAGA+TGG - chr1_3:20138698-20138717 Msa0108550:intron 40.0%
!!! CTCTCTCGCTTTCACTTTTT+AGG - chr1_3:20138778-20138797 Msa0108550:intron 40.0%
ACAGTTACTGGACTATTCAC+AGG + chr1_3:20139079-20139098 None:intergenic 40.0%
ATGTCACCACAAACAGTTAC+TGG + chr1_3:20139091-20139110 None:intergenic 40.0%
ACTGTTTGTGGTGACATTCA+TGG - chr1_3:20139094-20139113 Msa0108550:intron 40.0%
!!! ATGAAACTTTTTCAGACCGG+TGG - chr1_3:20139133-20139152 Msa0108550:intron 40.0%
!!! TGAAACTTTTTCAGACCGGT+GGG - chr1_3:20139134-20139153 Msa0108550:intron 40.0%
GTTGTATATGTGTCTGTGTC+AGG + chr1_3:20139475-20139494 None:intergenic 40.0%
! CAAACCTTTTCCCACTAAGT+GGG + chr1_3:20139602-20139621 None:intergenic 40.0%
GTGTCTGACACTGATACTAT+TGG + chr1_3:20139656-20139675 None:intergenic 40.0%
ATAGTATCAGTGTCAGACAC+TGG - chr1_3:20139656-20139675 Msa0108550:intron 40.0%
AAACACCTACGTAGCATTGT+CGG + chr1_3:20139710-20139729 None:intergenic 40.0%
CGTAGAAGGGTTATATTAGC+AGG + chr1_3:20139823-20139842 None:intergenic 40.0%
GCTAATATAACCCTTCTACG+TGG - chr1_3:20139823-20139842 Msa0108550:intron 40.0%
TTCATGGTTTCCACGTAGAA+GGG + chr1_3:20139836-20139855 None:intergenic 40.0%
TTTCATGGTTTCCACGTAGA+AGG + chr1_3:20139837-20139856 None:intergenic 40.0%
GTGTGAGTTGTCTACTTTCA+TGG + chr1_3:20139852-20139871 None:intergenic 40.0%
TGAAAGTAGACAACTCACAC+AGG - chr1_3:20139852-20139871 Msa0108550:intron 40.0%
! TAGCGGTTTGTTCAAATTCC+CGG - chr1_3:20140023-20140042 Msa0108550:intron 40.0%
! TCTATAGGCCTTTTGTGATC+AGG - chr1_3:20140055-20140074 Msa0108550:intron 40.0%
ATTGCAATGTTGCACATGGT+AGG - chr1_3:20140277-20140296 Msa0108550:intron 40.0%
GATGAATGCCAGAGAAAGTA+TGG - chr1_3:20140401-20140420 Msa0108550:intron 40.0%
CACTGCTTAAATGTGAGTAG+GGG + chr1_3:20140543-20140562 None:intergenic 40.0%
GCACTGCTTAAATGTGAGTA+GGG + chr1_3:20140544-20140563 None:intergenic 40.0%
TGCACTGCTTAAATGTGAGT+AGG + chr1_3:20140545-20140564 None:intergenic 40.0%
TTGTTCTGATGTCTGGAGAA+AGG + chr1_3:20140658-20140677 None:intergenic 40.0%
TGGTCAATTGTTCTGATGTC+TGG + chr1_3:20140665-20140684 None:intergenic 40.0%
AGACATCAGAACAATTGACC+AGG - chr1_3:20140664-20140683 Msa0108550:intron 40.0%
AAATGCACTTAGGGCCTATT+TGG + chr1_3:20141020-20141039 None:intergenic 40.0%
AAATAGGCCCTAAGTGCATT+TGG - chr1_3:20141019-20141038 Msa0108550:intron 40.0%
AACATGTTGTGGTAAAAGGG+TGG + chr1_3:20141240-20141259 None:intergenic 40.0%
TCAGCCCTATTAACATGTTG+TGG + chr1_3:20141251-20141270 None:intergenic 40.0%
!! AATCAGAGAGGTATCAGCAA+TGG - chr1_3:20141387-20141406 Msa0108550:intron 40.0%
GACAGATAAGAGTCATTGAG+CGG - chr1_3:20141893-20141912 Msa0108550:intron 40.0%
AACTGTGAAATTCCTCACGA+GGG - chr1_3:20141916-20141935 Msa0108550:intron 40.0%
!! GGCCATTTTGTGATCTTATG+TGG - chr1_3:20141938-20141957 Msa0108550:intron 40.0%
GCCCATGTTTCAATATCTTC+AGG + chr1_3:20141970-20141989 None:intergenic 40.0%
ACATTACCTCAGATGTAACC+CGG + chr1_3:20142029-20142048 None:intergenic 40.0%
GCACATCAACTTGTACAAGA+AGG - chr1_3:20142155-20142174 Msa0108550:intron 40.0%
CAGTTACAAGGCCTTTATCT+TGG + chr1_3:20142196-20142215 None:intergenic 40.0%
TCGCTTACTTGAAACACTTC+GGG + chr1_3:20142370-20142389 None:intergenic 40.0%
CTCGCTTACTTGAAACACTT+CGG + chr1_3:20142371-20142390 None:intergenic 40.0%
CAAAATACTCAGAGAAGCTG+CGG + chr1_3:20142464-20142483 None:intergenic 40.0%
!!! GTATTTTGGAGTAGTTGTCG+TGG - chr1_3:20142476-20142495 Msa0108550:intron 40.0%
GTCTGTAAATTGAGCTAGTG+TGG + chr1_3:20142549-20142568 None:intergenic 40.0%
CAGATTGTCAGTTACATACG+GGG - chr1_3:20143155-20143174 Msa0108550:intron 40.0%
ACCGGGTACATGATATATAC+TGG + chr1_3:20143212-20143231 None:intergenic 40.0%
AGTATATATCATGTACCCGG+TGG - chr1_3:20143211-20143230 Msa0108550:intron 40.0%
GAAATTGGATGTTGAAAGGG+AGG - chr1_3:20143310-20143329 Msa0108550:intron 40.0%
ATGTTGAAAGGGAGGTCATT+AGG - chr1_3:20143318-20143337 Msa0108550:intron 40.0%
TGTTGAAAGGGAGGTCATTA+GGG - chr1_3:20143319-20143338 Msa0108550:intron 40.0%
! TGTTCACAGTTTAAAGCCTC+AGG + chr1_3:20143440-20143459 None:intergenic 40.0%
ATAAGTGACATGCTCAGACT+GGG - chr1_3:20143767-20143786 Msa0108550:intron 40.0%
CATAGTTGAAAACCTTCCCA+TGG + chr1_3:20143819-20143838 None:intergenic 40.0%
! AGGTTTTCAACTATGAGCTC+AGG - chr1_3:20143824-20143843 Msa0108550:intron 40.0%
ATAGCAAGGATCTATTTGGC+AGG - chr1_3:20143877-20143896 Msa0108550:intron 40.0%
TCTCTGTTGCCTAAGCTTAT+TGG + chr1_3:20143979-20143998 None:intergenic 40.0%
GCATCTGTGGACAATTTATG+AGG - chr1_3:20144009-20144028 Msa0108550:intron 40.0%
TCTGTGGACAATTTATGAGG+CGG - chr1_3:20144012-20144031 Msa0108550:intron 40.0%
TGCTGCAGAACTTAAACCAA+AGG - chr1_3:20144130-20144149 Msa0108550:intron 40.0%
ATGCCCGATGTGTGAAAAAT+TGG - chr1_3:20144155-20144174 Msa0108550:intron 40.0%
TTTAGCACTCACTCTCCTAT+TGG - chr1_3:20144362-20144381 Msa0108550:intron 40.0%
CTATTGGACGGAATTCATGT+GGG - chr1_3:20144378-20144397 Msa0108550:intron 40.0%
! TTTATGTAGGTACCGCACTT+TGG + chr1_3:20144431-20144450 None:intergenic 40.0%
AAAGCAGTTGTGTCTAGACA+AGG + chr1_3:20144550-20144569 None:intergenic 40.0%
!!! GACACAACTGCTTTTTGAGT+TGG - chr1_3:20144556-20144575 Msa0108550:intron 40.0%
!!! CACAACTGCTTTTTGAGTTG+GGG - chr1_3:20144558-20144577 Msa0108550:intron 40.0%
CAGCATAATTGTCGCCTTAA+CGG + chr1_3:20144737-20144756 None:intergenic 40.0%
AAGGTGGTAAATGTAGTGTC+GGG - chr1_3:20144824-20144843 Msa0108550:intron 40.0%
!! TGAAACATTTGTCGGTGTCA+TGG - chr1_3:20144889-20144908 Msa0108550:intron 40.0%
AGGAGAACAATCAGATGAGA+GGG - chr1_3:20145058-20145077 Msa0108550:intron 40.0%
AAATATGGAACACCTGTCCT+AGG + chr1_3:20145084-20145103 None:intergenic 40.0%
TCGTTGCATGTTCCTGTGTT+TGG - chr1_3:20137398-20137417 Msa0108550:three_prime_UTR 45.0%
!! TGTTTGGTGCGGTTATGTGT+TGG - chr1_3:20137414-20137433 Msa0108550:three_prime_UTR 45.0%
GACTCATAATCTCGTTGAGG+TGG + chr1_3:20137601-20137620 None:intergenic 45.0%
GGTCACTTGAGTTTCAGTCA+TGG + chr1_3:20137665-20137684 None:intergenic 45.0%
! GGTGTCTGAAGTTCAAATCC+CGG - chr1_3:20138218-20138237 Msa0108550:intron 45.0%
GCAAAGTATATGCAAGGTCC+GGG + chr1_3:20138239-20138258 None:intergenic 45.0%
!! TCCTCCTTCTCCTCTTGTTT+TGG - chr1_3:20138594-20138613 Msa0108550:intron 45.0%
!!! CCTCCTTCTCCTCTTGTTTT+GGG - chr1_3:20138595-20138614 Msa0108550:intron 45.0%
TCTCTTCTCTTCTCTTCCCT+CGG + chr1_3:20138639-20138658 None:intergenic 45.0%
TTTGGACCAATGGATCTCGA+AGG - chr1_3:20138688-20138707 Msa0108550:intron 45.0%
GTTCGTCTTCGAGAAGATGT+TGG + chr1_3:20138724-20138743 None:intergenic 45.0%
TAGGGTGACTTTGTTGATCG+TGG - chr1_3:20139285-20139304 Msa0108550:intron 45.0%
!!! ACGGCATATTTTGATCCACG+TGG - chr1_3:20139571-20139590 Msa0108550:intron 45.0%
! CTTTTCCCACTAAGTGGGAT+CGG + chr1_3:20139597-20139616 None:intergenic 45.0%
! GCAAACCTTTTCCCACTAAG+TGG + chr1_3:20139603-20139622 None:intergenic 45.0%
!! GCATTGTCGGTTCACAATGA+AGG + chr1_3:20139697-20139716 None:intergenic 45.0%
TCCCGGTCATAGACATCTAT+AGG - chr1_3:20140040-20140059 Msa0108550:intron 45.0%
GCCTATAGATGTCTATGACC+GGG + chr1_3:20140044-20140063 None:intergenic 45.0%
GGCCTATAGATGTCTATGAC+CGG + chr1_3:20140045-20140064 None:intergenic 45.0%
CCACAGAACCTGATCACAAA+AGG + chr1_3:20140066-20140085 None:intergenic 45.0%
! CCTTTTGTGATCAGGTTCTG+TGG - chr1_3:20140063-20140082 Msa0108550:intron 45.0%
TTGTGATCAGGTTCTGTGGA+AGG - chr1_3:20140067-20140086 Msa0108550:intron 45.0%
TGTGATCAGGTTCTGTGGAA+GGG - chr1_3:20140068-20140087 Msa0108550:intron 45.0%
ATAGAGAGAGGAAAGAGGGA+AGG + chr1_3:20140520-20140539 None:intergenic 45.0%
TTATATGCTATGGTCGACCC+AGG - chr1_3:20140613-20140632 Msa0108550:intron 45.0%
TGTAAAGTTCGTCCAGCAAC+TGG + chr1_3:20140706-20140725 None:intergenic 45.0%
AAGTTGGCATGGCACACATT+TGG + chr1_3:20141129-20141148 None:intergenic 45.0%
! GTCAAATCGTCAGCCTGTTT+TGG + chr1_3:20141593-20141612 None:intergenic 45.0%
GAACTGTGAAATTCCTCACG+AGG - chr1_3:20141915-20141934 Msa0108550:intron 45.0%
ACTGTGAAATTCCTCACGAG+GGG - chr1_3:20141917-20141936 Msa0108550:intron 45.0%
CATTACCTCAGATGTAACCC+GGG + chr1_3:20142028-20142047 None:intergenic 45.0%
GTTGATGTGCTCGACAAACA+AGG + chr1_3:20142145-20142164 None:intergenic 45.0%
!!! GATCAACTGGTCTTTTGAGG+TGG - chr1_3:20142269-20142288 Msa0108550:CDS 45.0%
CCTTTACCCCCCCTATTAAT+TGG + chr1_3:20142343-20142362 None:intergenic 45.0%
CCAATTAATAGGGGGGGTAA+AGG - chr1_3:20142340-20142359 Msa0108550:intron 45.0%
GCTTACTTGAAACACTTCGG+GGG + chr1_3:20142368-20142387 None:intergenic 45.0%
CGCTTACTTGAAACACTTCG+GGG + chr1_3:20142369-20142388 None:intergenic 45.0%
!! AGCTTGAGCTTGCTGTTTGA+GGG - chr1_3:20142389-20142408 Msa0108550:intron 45.0%
TAGCATTGTGGGGCAAAATC+AGG - chr1_3:20142435-20142454 Msa0108550:intron 45.0%
! CGCAGCTTCTCTGAGTATTT+TGG - chr1_3:20142462-20142481 Msa0108550:intron 45.0%
ATTTAGATGGTCCCACCATG+CGG - chr1_3:20142607-20142626 Msa0108550:intron 45.0%
AGAAAGTTATCCCGCATGGT+GGG + chr1_3:20142621-20142640 None:intergenic 45.0%
AAGAAAGTTATCCCGCATGG+TGG + chr1_3:20142622-20142641 None:intergenic 45.0%
ACCATGCGGGATAACTTTCT+TGG - chr1_3:20142621-20142640 Msa0108550:intron 45.0%
ACCAAGAAAGTTATCCCGCA+TGG + chr1_3:20142625-20142644 None:intergenic 45.0%
TGTTGCATCATTTGGCCTCA+TGG - chr1_3:20142857-20142876 Msa0108550:intron 45.0%
! AAAGGCACACATACACCATG+AGG + chr1_3:20142875-20142894 None:intergenic 45.0%
GTTGGCATGTCCATTACAGT+TGG - chr1_3:20143110-20143129 Msa0108550:intron 45.0%
AACAAGCATCAGCAGCTTCA+GGG + chr1_3:20143381-20143400 None:intergenic 45.0%
AAACAAGCATCAGCAGCTTC+AGG + chr1_3:20143382-20143401 None:intergenic 45.0%
CATAAGTGACATGCTCAGAC+TGG - chr1_3:20143766-20143785 Msa0108550:intron 45.0%
CACAGTTACTCAAGTCTCGT+AGG + chr1_3:20144215-20144234 None:intergenic 45.0%
CCACATGAATTCCGTCCAAT+AGG + chr1_3:20144380-20144399 None:intergenic 45.0%
CCTATTGGACGGAATTCATG+TGG - chr1_3:20144377-20144396 Msa0108550:intron 45.0%
! AGGTACCGCACTTTGGAAAT+GGG + chr1_3:20144424-20144443 None:intergenic 45.0%
! TAGGTACCGCACTTTGGAAA+TGG + chr1_3:20144425-20144444 None:intergenic 45.0%
!! TGTTGGTGATAGTTGGGCTA+TGG - chr1_3:20144701-20144720 Msa0108550:intron 45.0%
GGGTCAGTAACCAAAATGCT+AGG + chr1_3:20144986-20145005 None:intergenic 45.0%
!!! GCATTTTGGTTACTGACCCT+TGG - chr1_3:20144987-20145006 Msa0108550:intron 45.0%
GAGGAGAACAATCAGATGAG+AGG - chr1_3:20145057-20145076 Msa0108550:intron 45.0%
TCGTTGCATGTTCCTGTGTT+TGG - chr1_3:20137398-20137417 Msa0108550:three_prime_UTR 45.0%
!! TGTTTGGTGCGGTTATGTGT+TGG - chr1_3:20137414-20137433 Msa0108550:three_prime_UTR 45.0%
GACTCATAATCTCGTTGAGG+TGG + chr1_3:20137601-20137620 None:intergenic 45.0%
GGTCACTTGAGTTTCAGTCA+TGG + chr1_3:20137665-20137684 None:intergenic 45.0%
! GGTGTCTGAAGTTCAAATCC+CGG - chr1_3:20138218-20138237 Msa0108550:intron 45.0%
GCAAAGTATATGCAAGGTCC+GGG + chr1_3:20138239-20138258 None:intergenic 45.0%
!! TCCTCCTTCTCCTCTTGTTT+TGG - chr1_3:20138594-20138613 Msa0108550:intron 45.0%
!!! CCTCCTTCTCCTCTTGTTTT+GGG - chr1_3:20138595-20138614 Msa0108550:intron 45.0%
TCTCTTCTCTTCTCTTCCCT+CGG + chr1_3:20138639-20138658 None:intergenic 45.0%
TTTGGACCAATGGATCTCGA+AGG - chr1_3:20138688-20138707 Msa0108550:intron 45.0%
GTTCGTCTTCGAGAAGATGT+TGG + chr1_3:20138724-20138743 None:intergenic 45.0%
TAGGGTGACTTTGTTGATCG+TGG - chr1_3:20139285-20139304 Msa0108550:intron 45.0%
!!! ACGGCATATTTTGATCCACG+TGG - chr1_3:20139571-20139590 Msa0108550:intron 45.0%
! CTTTTCCCACTAAGTGGGAT+CGG + chr1_3:20139597-20139616 None:intergenic 45.0%
! GCAAACCTTTTCCCACTAAG+TGG + chr1_3:20139603-20139622 None:intergenic 45.0%
!! GCATTGTCGGTTCACAATGA+AGG + chr1_3:20139697-20139716 None:intergenic 45.0%
TCCCGGTCATAGACATCTAT+AGG - chr1_3:20140040-20140059 Msa0108550:intron 45.0%
GCCTATAGATGTCTATGACC+GGG + chr1_3:20140044-20140063 None:intergenic 45.0%
GGCCTATAGATGTCTATGAC+CGG + chr1_3:20140045-20140064 None:intergenic 45.0%
CCACAGAACCTGATCACAAA+AGG + chr1_3:20140066-20140085 None:intergenic 45.0%
! CCTTTTGTGATCAGGTTCTG+TGG - chr1_3:20140063-20140082 Msa0108550:intron 45.0%
TTGTGATCAGGTTCTGTGGA+AGG - chr1_3:20140067-20140086 Msa0108550:intron 45.0%
TGTGATCAGGTTCTGTGGAA+GGG - chr1_3:20140068-20140087 Msa0108550:intron 45.0%
ATAGAGAGAGGAAAGAGGGA+AGG + chr1_3:20140520-20140539 None:intergenic 45.0%
TTATATGCTATGGTCGACCC+AGG - chr1_3:20140613-20140632 Msa0108550:intron 45.0%
TGTAAAGTTCGTCCAGCAAC+TGG + chr1_3:20140706-20140725 None:intergenic 45.0%
AAGTTGGCATGGCACACATT+TGG + chr1_3:20141129-20141148 None:intergenic 45.0%
! GTCAAATCGTCAGCCTGTTT+TGG + chr1_3:20141593-20141612 None:intergenic 45.0%
GAACTGTGAAATTCCTCACG+AGG - chr1_3:20141915-20141934 Msa0108550:intron 45.0%
ACTGTGAAATTCCTCACGAG+GGG - chr1_3:20141917-20141936 Msa0108550:intron 45.0%
CATTACCTCAGATGTAACCC+GGG + chr1_3:20142028-20142047 None:intergenic 45.0%
GTTGATGTGCTCGACAAACA+AGG + chr1_3:20142145-20142164 None:intergenic 45.0%
!!! GATCAACTGGTCTTTTGAGG+TGG - chr1_3:20142269-20142288 Msa0108550:CDS 45.0%
CCTTTACCCCCCCTATTAAT+TGG + chr1_3:20142343-20142362 None:intergenic 45.0%
CCAATTAATAGGGGGGGTAA+AGG - chr1_3:20142340-20142359 Msa0108550:intron 45.0%
GCTTACTTGAAACACTTCGG+GGG + chr1_3:20142368-20142387 None:intergenic 45.0%
CGCTTACTTGAAACACTTCG+GGG + chr1_3:20142369-20142388 None:intergenic 45.0%
!! AGCTTGAGCTTGCTGTTTGA+GGG - chr1_3:20142389-20142408 Msa0108550:intron 45.0%
TAGCATTGTGGGGCAAAATC+AGG - chr1_3:20142435-20142454 Msa0108550:intron 45.0%
! CGCAGCTTCTCTGAGTATTT+TGG - chr1_3:20142462-20142481 Msa0108550:intron 45.0%
ATTTAGATGGTCCCACCATG+CGG - chr1_3:20142607-20142626 Msa0108550:intron 45.0%
AGAAAGTTATCCCGCATGGT+GGG + chr1_3:20142621-20142640 None:intergenic 45.0%
AAGAAAGTTATCCCGCATGG+TGG + chr1_3:20142622-20142641 None:intergenic 45.0%
ACCATGCGGGATAACTTTCT+TGG - chr1_3:20142621-20142640 Msa0108550:intron 45.0%
ACCAAGAAAGTTATCCCGCA+TGG + chr1_3:20142625-20142644 None:intergenic 45.0%
TGTTGCATCATTTGGCCTCA+TGG - chr1_3:20142857-20142876 Msa0108550:intron 45.0%
! AAAGGCACACATACACCATG+AGG + chr1_3:20142875-20142894 None:intergenic 45.0%
GTTGGCATGTCCATTACAGT+TGG - chr1_3:20143110-20143129 Msa0108550:intron 45.0%
AACAAGCATCAGCAGCTTCA+GGG + chr1_3:20143381-20143400 None:intergenic 45.0%
AAACAAGCATCAGCAGCTTC+AGG + chr1_3:20143382-20143401 None:intergenic 45.0%
CATAAGTGACATGCTCAGAC+TGG - chr1_3:20143766-20143785 Msa0108550:intron 45.0%
CACAGTTACTCAAGTCTCGT+AGG + chr1_3:20144215-20144234 None:intergenic 45.0%
CCACATGAATTCCGTCCAAT+AGG + chr1_3:20144380-20144399 None:intergenic 45.0%
CCTATTGGACGGAATTCATG+TGG - chr1_3:20144377-20144396 Msa0108550:intron 45.0%
! AGGTACCGCACTTTGGAAAT+GGG + chr1_3:20144424-20144443 None:intergenic 45.0%
! TAGGTACCGCACTTTGGAAA+TGG + chr1_3:20144425-20144444 None:intergenic 45.0%
!! TGTTGGTGATAGTTGGGCTA+TGG - chr1_3:20144701-20144720 Msa0108550:intron 45.0%
GGGTCAGTAACCAAAATGCT+AGG + chr1_3:20144986-20145005 None:intergenic 45.0%
!!! GCATTTTGGTTACTGACCCT+TGG - chr1_3:20144987-20145006 Msa0108550:intron 45.0%
GAGGAGAACAATCAGATGAG+AGG - chr1_3:20145057-20145076 Msa0108550:intron 45.0%
!! AATAATTTATTAAAGATATA+AGG + chr1_3:20137719-20137738 None:intergenic 5.0%
!!! TTAATTTTTAGATAATTTTA+TGG + chr1_3:20137743-20137762 None:intergenic 5.0%
!!! AAAGTTTTTTTTTTTTTTTT+TGG - chr1_3:20138403-20138422 Msa0108550:intron 5.0%
!!! TTTTTTTTTTTTAATACAAA+AGG - chr1_3:20138444-20138463 Msa0108550:intron 5.0%
!!! TTTTTTTTTTTAATACAAAA+GGG - chr1_3:20138445-20138464 Msa0108550:intron 5.0%
!!! TCTAATTTTTTTTTTTTTTA+AGG + chr1_3:20138472-20138491 None:intergenic 5.0%
!! AAAAAAAAAAAATTAGAAAA+AGG - chr1_3:20138475-20138494 Msa0108550:intron 5.0%
!! TAAAAAAATCATTAAATAAA+AGG + chr1_3:20139776-20139795 None:intergenic 5.0%
!!! TTTATTTGTTAAAATAAATT+GGG - chr1_3:20140125-20140144 Msa0108550:intron 5.0%
!! GATTTAAAAATAAAAATATA+TGG + chr1_3:20144772-20144791 None:intergenic 5.0%
!! AATAATTTATTAAAGATATA+AGG + chr1_3:20137719-20137738 None:intergenic 5.0%
!!! TTAATTTTTAGATAATTTTA+TGG + chr1_3:20137743-20137762 None:intergenic 5.0%
!!! AAAGTTTTTTTTTTTTTTTT+TGG - chr1_3:20138403-20138422 Msa0108550:intron 5.0%
!!! TTTTTTTTTTTTAATACAAA+AGG - chr1_3:20138444-20138463 Msa0108550:intron 5.0%
!!! TTTTTTTTTTTAATACAAAA+GGG - chr1_3:20138445-20138464 Msa0108550:intron 5.0%
!!! TCTAATTTTTTTTTTTTTTA+AGG + chr1_3:20138472-20138491 None:intergenic 5.0%
!! AAAAAAAAAAAATTAGAAAA+AGG - chr1_3:20138475-20138494 Msa0108550:intron 5.0%
!! TAAAAAAATCATTAAATAAA+AGG + chr1_3:20139776-20139795 None:intergenic 5.0%
!!! TTTATTTGTTAAAATAAATT+GGG - chr1_3:20140125-20140144 Msa0108550:intron 5.0%
!! GATTTAAAAATAAAAATATA+TGG + chr1_3:20144772-20144791 None:intergenic 5.0%
! GCATGTTCCTGTGTTTGGTG+CGG - chr1_3:20137403-20137422 Msa0108550:three_prime_UTR 50.0%
CACATAACCGCACCAAACAC+AGG + chr1_3:20137413-20137432 None:intergenic 50.0%
TTGGTGCGGTTATGTGTTGG+CGG - chr1_3:20137417-20137436 Msa0108550:three_prime_UTR 50.0%
CCCAAAACAAGAGGAGAAGG+AGG + chr1_3:20138598-20138617 None:intergenic 50.0%
! ATTTTTGTTCGACAGCGCCG+AGG - chr1_3:20138619-20138638 Msa0108550:intron 50.0%
!! TTTTTGTTCGACAGCGCCGA+GGG - chr1_3:20138620-20138639 Msa0108550:intron 50.0%
TGAAAGCGAGAGAGAGAGAG+AGG + chr1_3:20138772-20138791 None:intergenic 50.0%
CGATCCCACTTAGTGGGAAA+AGG - chr1_3:20139595-20139614 Msa0108550:intron 50.0%
GTGAACCGACAATGCTACGT+AGG - chr1_3:20139702-20139721 Msa0108550:intron 50.0%
GGGGATAGAGAGAGGAAAGA+GGG + chr1_3:20140524-20140543 None:intergenic 50.0%
AGGGGATAGAGAGAGGAAAG+AGG + chr1_3:20140525-20140544 None:intergenic 50.0%
TGTGAGTAGGGGATAGAGAG+AGG + chr1_3:20140532-20140551 None:intergenic 50.0%
ACCCAGGTGCTTTGTGTTCA+CGG - chr1_3:20140629-20140648 Msa0108550:intron 50.0%
! ACCGTGAACACAAAGCACCT+GGG + chr1_3:20140633-20140652 None:intergenic 50.0%
GTTCGTCCAGCAACTGGAAA+GGG + chr1_3:20140700-20140719 None:intergenic 50.0%
AGTTCGTCCAGCAACTGGAA+AGG + chr1_3:20140701-20140720 None:intergenic 50.0%
GTTGTGGTAAAAGGGTGGAC+AGG + chr1_3:20141235-20141254 None:intergenic 50.0%
GGTATCAGCAATGGCCTGTT+TGG - chr1_3:20141396-20141415 Msa0108550:intron 50.0%
GTGCTCGACAAACAAGGTCA+AGG + chr1_3:20142139-20142158 None:intergenic 50.0%
!! GAGCTTGAGCTTGCTGTTTG+AGG - chr1_3:20142388-20142407 Msa0108550:intron 50.0%
!! GCTTGAGCTTGCTGTTTGAG+GGG - chr1_3:20142390-20142409 Msa0108550:intron 50.0%
! GTTTGAGGGGACTCGGTTAT+TGG - chr1_3:20142403-20142422 Msa0108550:intron 50.0%
! GGACTCGGTTATTGGTAGGT+GGG - chr1_3:20142411-20142430 Msa0108550:intron 50.0%
! GACTCGGTTATTGGTAGGTG+GGG - chr1_3:20142412-20142431 Msa0108550:intron 50.0%
! GCATGGTGGGACCATCTAAA+TGG + chr1_3:20142608-20142627 None:intergenic 50.0%
TTTAGATGGTCCCACCATGC+GGG - chr1_3:20142608-20142627 Msa0108550:intron 50.0%
ACAAGCATCAGCAGCTTCAG+GGG + chr1_3:20143380-20143399 None:intergenic 50.0%
AGACTGGGAAGTGGTACGAT+TGG - chr1_3:20143782-20143801 Msa0108550:intron 50.0%
! GAAGTGGTACGATTGGTCAG+TGG - chr1_3:20143789-20143808 Msa0108550:intron 50.0%
ATTGGTCAGTGGCGATCCAT+GGG - chr1_3:20143800-20143819 Msa0108550:intron 50.0%
AGCTTAGGCAACAGAGAGCT+TGG - chr1_3:20143982-20144001 Msa0108550:intron 50.0%
AGGCAACAGAGAGCTTGGAA+AGG - chr1_3:20143987-20144006 Msa0108550:intron 50.0%
!! AGAGCTTGGAAAGGCATCTG+TGG - chr1_3:20143996-20144015 Msa0108550:intron 50.0%
TGGACAATTTATGAGGCGGC+TGG - chr1_3:20144016-20144035 Msa0108550:intron 50.0%
GCACTCACTCTCCTATTGGA+CGG - chr1_3:20144366-20144385 Msa0108550:intron 50.0%
TGGGACCCATTTCCAAAGTG+CGG - chr1_3:20144416-20144435 Msa0108550:intron 50.0%
!! TTTGAGTTGGGGTGCATCTC+TGG - chr1_3:20144569-20144588 Msa0108550:intron 50.0%
ATGGCTGGTACATGCCGTTA+AGG - chr1_3:20144720-20144739 Msa0108550:intron 50.0%
ACAATCAGATGAGAGGGCCT+AGG - chr1_3:20145064-20145083 Msa0108550:intron 50.0%
! GCATGTTCCTGTGTTTGGTG+CGG - chr1_3:20137403-20137422 Msa0108550:three_prime_UTR 50.0%
CACATAACCGCACCAAACAC+AGG + chr1_3:20137413-20137432 None:intergenic 50.0%
TTGGTGCGGTTATGTGTTGG+CGG - chr1_3:20137417-20137436 Msa0108550:three_prime_UTR 50.0%
CCCAAAACAAGAGGAGAAGG+AGG + chr1_3:20138598-20138617 None:intergenic 50.0%
! ATTTTTGTTCGACAGCGCCG+AGG - chr1_3:20138619-20138638 Msa0108550:intron 50.0%
!! TTTTTGTTCGACAGCGCCGA+GGG - chr1_3:20138620-20138639 Msa0108550:intron 50.0%
TGAAAGCGAGAGAGAGAGAG+AGG + chr1_3:20138772-20138791 None:intergenic 50.0%
CGATCCCACTTAGTGGGAAA+AGG - chr1_3:20139595-20139614 Msa0108550:intron 50.0%
GTGAACCGACAATGCTACGT+AGG - chr1_3:20139702-20139721 Msa0108550:intron 50.0%
GGGGATAGAGAGAGGAAAGA+GGG + chr1_3:20140524-20140543 None:intergenic 50.0%
AGGGGATAGAGAGAGGAAAG+AGG + chr1_3:20140525-20140544 None:intergenic 50.0%
TGTGAGTAGGGGATAGAGAG+AGG + chr1_3:20140532-20140551 None:intergenic 50.0%
ACCCAGGTGCTTTGTGTTCA+CGG - chr1_3:20140629-20140648 Msa0108550:intron 50.0%
! ACCGTGAACACAAAGCACCT+GGG + chr1_3:20140633-20140652 None:intergenic 50.0%
GTTCGTCCAGCAACTGGAAA+GGG + chr1_3:20140700-20140719 None:intergenic 50.0%
AGTTCGTCCAGCAACTGGAA+AGG + chr1_3:20140701-20140720 None:intergenic 50.0%
GTTGTGGTAAAAGGGTGGAC+AGG + chr1_3:20141235-20141254 None:intergenic 50.0%
GGTATCAGCAATGGCCTGTT+TGG - chr1_3:20141396-20141415 Msa0108550:intron 50.0%
GTGCTCGACAAACAAGGTCA+AGG + chr1_3:20142139-20142158 None:intergenic 50.0%
!! GAGCTTGAGCTTGCTGTTTG+AGG - chr1_3:20142388-20142407 Msa0108550:intron 50.0%
!! GCTTGAGCTTGCTGTTTGAG+GGG - chr1_3:20142390-20142409 Msa0108550:intron 50.0%
! GTTTGAGGGGACTCGGTTAT+TGG - chr1_3:20142403-20142422 Msa0108550:intron 50.0%
! GGACTCGGTTATTGGTAGGT+GGG - chr1_3:20142411-20142430 Msa0108550:intron 50.0%
! GACTCGGTTATTGGTAGGTG+GGG - chr1_3:20142412-20142431 Msa0108550:intron 50.0%
! GCATGGTGGGACCATCTAAA+TGG + chr1_3:20142608-20142627 None:intergenic 50.0%
TTTAGATGGTCCCACCATGC+GGG - chr1_3:20142608-20142627 Msa0108550:intron 50.0%
ACAAGCATCAGCAGCTTCAG+GGG + chr1_3:20143380-20143399 None:intergenic 50.0%
AGACTGGGAAGTGGTACGAT+TGG - chr1_3:20143782-20143801 Msa0108550:intron 50.0%
! GAAGTGGTACGATTGGTCAG+TGG - chr1_3:20143789-20143808 Msa0108550:intron 50.0%
ATTGGTCAGTGGCGATCCAT+GGG - chr1_3:20143800-20143819 Msa0108550:intron 50.0%
AGCTTAGGCAACAGAGAGCT+TGG - chr1_3:20143982-20144001 Msa0108550:intron 50.0%
AGGCAACAGAGAGCTTGGAA+AGG - chr1_3:20143987-20144006 Msa0108550:intron 50.0%
!! AGAGCTTGGAAAGGCATCTG+TGG - chr1_3:20143996-20144015 Msa0108550:intron 50.0%
TGGACAATTTATGAGGCGGC+TGG - chr1_3:20144016-20144035 Msa0108550:intron 50.0%
GCACTCACTCTCCTATTGGA+CGG - chr1_3:20144366-20144385 Msa0108550:intron 50.0%
TGGGACCCATTTCCAAAGTG+CGG - chr1_3:20144416-20144435 Msa0108550:intron 50.0%
!! TTTGAGTTGGGGTGCATCTC+TGG - chr1_3:20144569-20144588 Msa0108550:intron 50.0%
ATGGCTGGTACATGCCGTTA+AGG - chr1_3:20144720-20144739 Msa0108550:intron 50.0%
ACAATCAGATGAGAGGGCCT+AGG - chr1_3:20145064-20145083 Msa0108550:intron 50.0%
! TGTGTTGGCGGTGGTGATGA+CGG - chr1_3:20137429-20137448 Msa0108550:three_prime_UTR 55.0%
!! GTGGTGGTGGTGGAGAAAAG+AGG - chr1_3:20137451-20137470 Msa0108550:three_prime_UTR 55.0%
! CACCGTGAACACAAAGCACC+TGG + chr1_3:20140634-20140653 None:intergenic 55.0%
CAGGTGCTTTGTGTTCACGG+TGG - chr1_3:20140632-20140651 Msa0108550:intron 55.0%
GGAAAGGGAGCTAGAGAACC+TGG + chr1_3:20140685-20140704 None:intergenic 55.0%
CTAGCTCCCTTTCCAGTTGC+TGG - chr1_3:20140691-20140710 Msa0108550:intron 55.0%
TCACAAAATGGCCCCTCGTG+AGG + chr1_3:20141931-20141950 None:intergenic 55.0%
AAAAGCCAACCAGCTCCACG+TGG + chr1_3:20142000-20142019 None:intergenic 55.0%
!!! CGTGGAGCTGGTTGGCTTTT+CGG - chr1_3:20142000-20142019 Msa0108550:intron 55.0%
!!! CTGGTTGGCTTTTCGGATCC+CGG - chr1_3:20142007-20142026 Msa0108550:intron 55.0%
!!! TGGTTGGCTTTTCGGATCCC+GGG - chr1_3:20142008-20142027 Msa0108550:intron 55.0%
!! GCTTGCTGTTTGAGGGGACT+CGG - chr1_3:20142396-20142415 Msa0108550:intron 55.0%
! GAGGGGACTCGGTTATTGGT+AGG - chr1_3:20142407-20142426 Msa0108550:intron 55.0%
! GGGACTCGGTTATTGGTAGG+TGG - chr1_3:20142410-20142429 Msa0108550:intron 55.0%
TGGTAGGTGGGGTAGCATTG+TGG - chr1_3:20142423-20142442 Msa0108550:intron 55.0%
GGTAGGTGGGGTAGCATTGT+GGG - chr1_3:20142424-20142443 Msa0108550:intron 55.0%
GTAGGTGGGGTAGCATTGTG+GGG - chr1_3:20142425-20142444 Msa0108550:intron 55.0%
!! GTCGAAACGCTGATTCCACC+GGG + chr1_3:20143229-20143248 None:intergenic 55.0%
!! CGTCGAAACGCTGATTCCAC+CGG + chr1_3:20143230-20143249 None:intergenic 55.0%
CAAGCATCAGCAGCTTCAGG+GGG + chr1_3:20143379-20143398 None:intergenic 55.0%
GACATGCTCAGACTGGGAAG+TGG - chr1_3:20143773-20143792 Msa0108550:intron 55.0%
! GATTGGTCAGTGGCGATCCA+TGG - chr1_3:20143799-20143818 Msa0108550:intron 55.0%
CAATTTATGAGGCGGCTGGC+AGG - chr1_3:20144020-20144039 Msa0108550:intron 55.0%
CACACATCGGGCATGACCTT+TGG + chr1_3:20144149-20144168 None:intergenic 55.0%
! TGGGTGTCACCACTTCACGT+GGG - chr1_3:20144397-20144416 Msa0108550:intron 55.0%
GAAATGGGTCCCACGTGAAG+TGG + chr1_3:20144409-20144428 None:intergenic 55.0%
GGTGATAGTTGGGCTATGGC+TGG - chr1_3:20144705-20144724 Msa0108550:intron 55.0%
! TGTGTTGGCGGTGGTGATGA+CGG - chr1_3:20137429-20137448 Msa0108550:three_prime_UTR 55.0%
!! GTGGTGGTGGTGGAGAAAAG+AGG - chr1_3:20137451-20137470 Msa0108550:three_prime_UTR 55.0%
! CACCGTGAACACAAAGCACC+TGG + chr1_3:20140634-20140653 None:intergenic 55.0%
CAGGTGCTTTGTGTTCACGG+TGG - chr1_3:20140632-20140651 Msa0108550:intron 55.0%
GGAAAGGGAGCTAGAGAACC+TGG + chr1_3:20140685-20140704 None:intergenic 55.0%
CTAGCTCCCTTTCCAGTTGC+TGG - chr1_3:20140691-20140710 Msa0108550:intron 55.0%
TCACAAAATGGCCCCTCGTG+AGG + chr1_3:20141931-20141950 None:intergenic 55.0%
AAAAGCCAACCAGCTCCACG+TGG + chr1_3:20142000-20142019 None:intergenic 55.0%
!!! CGTGGAGCTGGTTGGCTTTT+CGG - chr1_3:20142000-20142019 Msa0108550:intron 55.0%
!!! CTGGTTGGCTTTTCGGATCC+CGG - chr1_3:20142007-20142026 Msa0108550:intron 55.0%
!!! TGGTTGGCTTTTCGGATCCC+GGG - chr1_3:20142008-20142027 Msa0108550:intron 55.0%
!! GCTTGCTGTTTGAGGGGACT+CGG - chr1_3:20142396-20142415 Msa0108550:intron 55.0%
! GAGGGGACTCGGTTATTGGT+AGG - chr1_3:20142407-20142426 Msa0108550:intron 55.0%
! GGGACTCGGTTATTGGTAGG+TGG - chr1_3:20142410-20142429 Msa0108550:intron 55.0%
TGGTAGGTGGGGTAGCATTG+TGG - chr1_3:20142423-20142442 Msa0108550:intron 55.0%
GGTAGGTGGGGTAGCATTGT+GGG - chr1_3:20142424-20142443 Msa0108550:intron 55.0%
GTAGGTGGGGTAGCATTGTG+GGG - chr1_3:20142425-20142444 Msa0108550:intron 55.0%
!! GTCGAAACGCTGATTCCACC+GGG + chr1_3:20143229-20143248 None:intergenic 55.0%
!! CGTCGAAACGCTGATTCCAC+CGG + chr1_3:20143230-20143249 None:intergenic 55.0%
CAAGCATCAGCAGCTTCAGG+GGG + chr1_3:20143379-20143398 None:intergenic 55.0%
GACATGCTCAGACTGGGAAG+TGG - chr1_3:20143773-20143792 Msa0108550:intron 55.0%
! GATTGGTCAGTGGCGATCCA+TGG - chr1_3:20143799-20143818 Msa0108550:intron 55.0%
CAATTTATGAGGCGGCTGGC+AGG - chr1_3:20144020-20144039 Msa0108550:intron 55.0%
CACACATCGGGCATGACCTT+TGG + chr1_3:20144149-20144168 None:intergenic 55.0%
! TGGGTGTCACCACTTCACGT+GGG - chr1_3:20144397-20144416 Msa0108550:intron 55.0%
GAAATGGGTCCCACGTGAAG+TGG + chr1_3:20144409-20144428 None:intergenic 55.0%
GGTGATAGTTGGGCTATGGC+TGG - chr1_3:20144705-20144724 Msa0108550:intron 55.0%
! GTGCGGTTATGTGTTGGCGG+TGG - chr1_3:20137420-20137439 Msa0108550:three_prime_UTR 60.0%
ACTAAGTGGGATCGGCCACG+TGG + chr1_3:20139589-20139608 None:intergenic 60.0%
ACGTGGCCGATCCCACTTAG+TGG - chr1_3:20139588-20139607 Msa0108550:intron 60.0%
CGTGGCCGATCCCACTTAGT+GGG - chr1_3:20139589-20139608 Msa0108550:intron 60.0%
ACATGGGCAGTCAGTCCACG+TGG - chr1_3:20141982-20142001 Msa0108550:intron 60.0%
TCAGTCCACGTGGAGCTGGT+TGG - chr1_3:20141992-20142011 Msa0108550:intron 60.0%
CGGATCCCGGGTTACATCTG+AGG - chr1_3:20142020-20142039 Msa0108550:intron 60.0%
GTCAGTGGCGATCCATGGGA+AGG - chr1_3:20143804-20143823 Msa0108550:intron 60.0%
! GTGGGTGTCACCACTTCACG+TGG - chr1_3:20144396-20144415 Msa0108550:intron 60.0%
CAGATGAGAGGGCCTAGGAC+AGG - chr1_3:20145069-20145088 Msa0108550:intron 60.0%
! GTGCGGTTATGTGTTGGCGG+TGG - chr1_3:20137420-20137439 Msa0108550:three_prime_UTR 60.0%
ACTAAGTGGGATCGGCCACG+TGG + chr1_3:20139589-20139608 None:intergenic 60.0%
ACGTGGCCGATCCCACTTAG+TGG - chr1_3:20139588-20139607 Msa0108550:intron 60.0%
CGTGGCCGATCCCACTTAGT+GGG - chr1_3:20139589-20139608 Msa0108550:intron 60.0%
ACATGGGCAGTCAGTCCACG+TGG - chr1_3:20141982-20142001 Msa0108550:intron 60.0%
TCAGTCCACGTGGAGCTGGT+TGG - chr1_3:20141992-20142011 Msa0108550:intron 60.0%
CGGATCCCGGGTTACATCTG+AGG - chr1_3:20142020-20142039 Msa0108550:intron 60.0%
GTCAGTGGCGATCCATGGGA+AGG - chr1_3:20143804-20143823 Msa0108550:intron 60.0%
! GTGGGTGTCACCACTTCACG+TGG - chr1_3:20144396-20144415 Msa0108550:intron 60.0%
CAGATGAGAGGGCCTAGGAC+AGG - chr1_3:20145069-20145088 Msa0108550:intron 60.0%
!! GTTGGCGGTGGTGATGACGG+TGG - chr1_3:20137432-20137451 Msa0108550:three_prime_UTR 65.0%
!! GGTGGTGATGACGGTGGTGG+TGG - chr1_3:20137438-20137457 Msa0108550:three_prime_UTR 65.0%
!! GGTGATGACGGTGGTGGTGG+TGG - chr1_3:20137441-20137460 Msa0108550:three_prime_UTR 65.0%
GCAGTCAGTCCACGTGGAGC+TGG - chr1_3:20141988-20142007 Msa0108550:intron 65.0%
!! GTTGGCGGTGGTGATGACGG+TGG - chr1_3:20137432-20137451 Msa0108550:three_prime_UTR 65.0%
!! GGTGGTGATGACGGTGGTGG+TGG - chr1_3:20137438-20137457 Msa0108550:three_prime_UTR 65.0%
!! GGTGATGACGGTGGTGGTGG+TGG - chr1_3:20137441-20137460 Msa0108550:three_prime_UTR 65.0%
GCAGTCAGTCCACGTGGAGC+TGG - chr1_3:20141988-20142007 Msa0108550:intron 65.0%
!! GGCGGTGGTGATGACGGTGG+TGG - chr1_3:20137435-20137454 Msa0108550:three_prime_UTR 70.0%
AGTCTCGGGCACGTGCCCAC+CGG + chr1_3:20139152-20139171 None:intergenic 70.0%
!! GGCGGTGGTGATGACGGTGG+TGG - chr1_3:20137435-20137454 Msa0108550:three_prime_UTR 70.0%
AGTCTCGGGCACGTGCCCAC+CGG + chr1_3:20139152-20139171 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 20137299 20145438 20137299 ID=Msa0108550;Name=Msa0108550
chr1_3 mRNA 20137299 20145438 20137299 ID=Msa0108550-mRNA-1;Parent=Msa0108550;Name=Msa0108550-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.77|0.9|0.9|0.88|0.8|10|299|260
chr1_3 exon 20137299 20137365 20137299 ID=Msa0108550-mRNA-1:exon:7288;Parent=Msa0108550-mRNA-1
chr1_3 exon 20137395 20137710 20137395 ID=Msa0108550-mRNA-1:exon:7287;Parent=Msa0108550-mRNA-1
chr1_3 exon 20139935 20140006 20139935 ID=Msa0108550-mRNA-1:exon:7286;Parent=Msa0108550-mRNA-1
chr1_3 exon 20140523 20140618 20140523 ID=Msa0108550-mRNA-1:exon:7285;Parent=Msa0108550-mRNA-1
chr1_3 exon 20140696 20140839 20140696 ID=Msa0108550-mRNA-1:exon:7284;Parent=Msa0108550-mRNA-1
chr1_3 exon 20142241 20142351 20142241 ID=Msa0108550-mRNA-1:exon:7283;Parent=Msa0108550-mRNA-1
chr1_3 exon 20142864 20142921 20142864 ID=Msa0108550-mRNA-1:exon:7282;Parent=Msa0108550-mRNA-1
chr1_3 exon 20143382 20143449 20143382 ID=Msa0108550-mRNA-1:exon:7281;Parent=Msa0108550-mRNA-1
chr1_3 exon 20143551 20143697 20143551 ID=Msa0108550-mRNA-1:exon:7280;Parent=Msa0108550-mRNA-1
chr1_3 exon 20145436 20145438 20145436 ID=Msa0108550-mRNA-1:exon:7279;Parent=Msa0108550-mRNA-1
chr1_3 CDS 20145436 20145438 20145436 ID=Msa0108550-mRNA-1:cds;Parent=Msa0108550-mRNA-1
chr1_3 CDS 20143551 20143697 20143551 ID=Msa0108550-mRNA-1:cds;Parent=Msa0108550-mRNA-1
chr1_3 CDS 20143382 20143449 20143382 ID=Msa0108550-mRNA-1:cds;Parent=Msa0108550-mRNA-1
chr1_3 CDS 20142864 20142921 20142864 ID=Msa0108550-mRNA-1:cds;Parent=Msa0108550-mRNA-1
chr1_3 CDS 20142241 20142351 20142241 ID=Msa0108550-mRNA-1:cds;Parent=Msa0108550-mRNA-1
chr1_3 CDS 20140696 20140839 20140696 ID=Msa0108550-mRNA-1:cds;Parent=Msa0108550-mRNA-1
chr1_3 CDS 20140523 20140618 20140523 ID=Msa0108550-mRNA-1:cds;Parent=Msa0108550-mRNA-1
chr1_3 CDS 20139935 20140006 20139935 ID=Msa0108550-mRNA-1:cds;Parent=Msa0108550-mRNA-1
chr1_3 CDS 20137627 20137710 20137627 ID=Msa0108550-mRNA-1:cds;Parent=Msa0108550-mRNA-1
chr1_3 three_prime_UTR 20137395 20137626 20137395 ID=Msa0108550-mRNA-1:three_prime_utr;Parent=Msa0108550-mRNA-1
chr1_3 three_prime_UTR 20137299 20137365 20137299 ID=Msa0108550-mRNA-1:three_prime_utr;Parent=Msa0108550-mRNA-1
Gene Sequence

>Msa0108550

ATGGTTAAAGAGATCTTAATTGAGGAATCGAATGTGCAACCTGTGAATAGTCCAGTAACTGTTTGTGGTGACATTCATGGTCAGTTTCATGATCTAATGAAACTTTTTCAGACCGGTGGGCACGTGCCCGAGACTAATTACATTTTTATGGGTGACTTTGTTGATCGTGGTTATAACAGTCTCGAAGTATTCACCATCCTTTTGCTTCTTAAAGCTAGATACCCTGCTAATATAACCCTTCTACGTGGAAACCATGAAAGTAGACAACTCACACAGGTCTATGGATTTTATGATGAATGCCAGAGAAAGTATGGAAATGCTAATGCTTGGCGATATTGTACCGATGTTTTCGACTATCTTACACTTTCTGCAATTATAGATGGAACTATAAGAGTCATTGAGCGGAACTGTGAAATTCCTCACGAGGGGCCATTTTGTGATCTTATGTGGAGTGATCCTGAAGATATTGAAACATGGGCAGTCAGTCCACGTGGAGCTGGTTGGCTTTTCGGATCCCGGGTTACATCTGAGTTTAATCACATAAACAACCTTGACCTTGTTTGTCGAGCACATCAACTTGTACAAGAAGGACTTAAGTACATGTTCCAAGATAAAGGCCTTGTAACTGTATGGTCTGCACCTAATTATTGTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATGGAGAGAGAAGTTAAGTTTTTCACTGAAACAGAGGAGAACAATCAGATGAGAGGGCCTAGGACAGGTGTTCCATATTTCTTATAA
Protein sequence

>Msa0108550

MVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTIRVIERNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENMEREVKFFTETEENNQMRGPRTGVPYFL*