AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0280430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0280430 MtrunA17_Chr2g0294341 100.000 110 0 0 1 110 1 110 1.49e-74 216
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0280430 AT3G06610.1 80.000 110 21 1 1 109 1 110 2.34e-56 170

Find 39 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGTTCCTATTATATTAA+TGG 0.194107 2_3:+15131435 Msa0280430:three_prime_UTR
TATATAACAGTTGGACAAAA+AGG 0.270788 2_3:+15131138 Msa0280430:intron
GCCCAACAAGCAACAAAATA+TGG 0.274707 2_3:-15131514 None:intergenic
AATATAATAGGAACTTCTTT+AGG 0.285089 2_3:-15131430 None:intergenic
ACTCTGCTGTTGCATGTCTT+TGG 0.288649 2_3:-15128079 None:intergenic
TGCTTCACCATTAATATAAT+AGG 0.338544 2_3:-15131442 None:intergenic
CTGCTTCTGCTGAAGCTGAT+TGG 0.380996 2_3:+15128184 Msa0280430:CDS
TATTATATTAATGGTGAAGC+AGG 0.433387 2_3:+15131444 Msa0280430:three_prime_UTR
CTTTAGGACCAGAAAATTTG+AGG 0.435403 2_3:-15131414 None:intergenic
TGGAGACGAAGGAGTGGAGA+TGG 0.452107 2_3:+15128047 Msa0280430:CDS
AGTGCAAGTAACAAAATAGT+TGG 0.453367 2_3:-15131540 None:intergenic
TAAATCACATTCTGAAACAT+TGG 0.455290 2_3:-15131250 None:intergenic
ATTGGAATGCTATGCGTTTG+AGG 0.478356 2_3:+15128202 Msa0280430:CDS
GATGATATGATATAGTTCAT+TGG 0.482040 2_3:+15131334 Msa0280430:three_prime_UTR
AGGACCTTGCGTGAGCATAA+AGG 0.482732 2_3:+15131169 Msa0280430:CDS
AGCTTCAGCAGAAGCAGCAA+TGG 0.492964 2_3:-15128178 None:intergenic
GGAGGGTGGAGACGAAGGAG+TGG 0.517925 2_3:+15128041 Msa0280430:CDS
TTTAGGACCAGAAAATTTGA+GGG 0.523666 2_3:-15131413 None:intergenic
AGAAGCAGCAATGGAAGCCA+TGG 0.542542 2_3:-15128169 None:intergenic
CGTCATTTGCTTCACTAGTG+TGG 0.560043 2_3:+15131211 Msa0280430:exon
TGGAATGATAAAACCATGGA+AGG 0.560527 2_3:-15131494 None:intergenic
TCAAATGTGACAGCCTTCCA+TGG 0.560662 2_3:+15131481 Msa0280430:three_prime_UTR
AACTCGTGTTCAAGAAGCCA+TGG 0.561938 2_3:+15128152 Msa0280430:CDS
AGACGAAGGAGTGGAGATGG+TGG 0.620347 2_3:+15128050 Msa0280430:CDS
TTCAGAAACGCTAAACTACA+CGG 0.629229 2_3:-15127962 None:intergenic
GAACACGAGTTGAATCAAGC+TGG 0.629690 2_3:-15128140 None:intergenic
GGAAGGCTGTCACATTTGAG+TGG 0.629781 2_3:-15131477 None:intergenic
TATAATTGCAAACGAACTAG+AGG 0.633062 2_3:+15131041 Msa0280430:CDS
TCACATCATAGTATACATTG+AGG 0.637665 2_3:-15131311 None:intergenic
AAAATGGAGGGTGGAGACGA+AGG 0.644266 2_3:+15128036 Msa0280430:exon
ATTATATTAATGGTGAAGCA+GGG 0.647366 2_3:+15131445 Msa0280430:three_prime_UTR
AATATGGAATGATAAAACCA+TGG 0.648249 2_3:-15131498 None:intergenic
CTAGTGAAGCAAATGACGAA+TGG 0.649500 2_3:-15131206 None:intergenic
TAGTGTGGTAGAAACAAACA+AGG 0.650096 2_3:+15131226 Msa0280430:exon
ATCACCTTTATGCTCACGCA+AGG 0.659657 2_3:-15131173 None:intergenic
TAGGACCAGAAAATTTGAGG+GGG 0.670773 2_3:-15131411 None:intergenic
TTAGGACCAGAAAATTTGAG+GGG 0.674228 2_3:-15131412 None:intergenic
AGTGTGGTAGAAACAAACAA+GGG 0.777336 2_3:+15131227 Msa0280430:exon
CAAGCTGGCGATCTTCAACG+CGG 0.793472 2_3:-15128125 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTGTTAATTTTGAATTT+TGG + chr2_3:15130296-15130315 Msa0280430:intron 10.0%
!!! AATTGTTAATTTTGAATTTT+GGG + chr2_3:15130297-15130316 Msa0280430:intron 10.0%
!!! AAAGTTTAATTTTTTCTGTA+TGG + chr2_3:15128405-15128424 Msa0280430:intron 15.0%
!!! AAGTTTAATTTTTTCTGTAT+GGG + chr2_3:15128406-15128425 Msa0280430:intron 15.0%
!! AATAAGCTTAAAACATATTA+TGG + chr2_3:15128851-15128870 Msa0280430:intron 15.0%
!!! AAATTGCTAATTTTTGAATT+TGG + chr2_3:15129603-15129622 Msa0280430:intron 15.0%
!!! AATTGCTAATTTTTGAATTT+GGG + chr2_3:15129604-15129623 Msa0280430:intron 15.0%
!!! AGTTCTTAAATTTTAATGTT+AGG + chr2_3:15130521-15130540 Msa0280430:intron 15.0%
!!! TTAAATTTTAATGTTAGGTT+TGG + chr2_3:15130526-15130545 Msa0280430:intron 15.0%
!! AAATATCAAAAAAAGAACAA+AGG - chr2_3:15130645-15130664 None:intergenic 15.0%
!!! CATATAGATTTTAAGTTAGA+TGG + chr2_3:15128507-15128526 Msa0280430:intron 20.0%
!! TAATCAATGAATCTAAAAAG+TGG - chr2_3:15128659-15128678 None:intergenic 20.0%
!!! AACTTAATGATGGAAATTAT+AGG + chr2_3:15129011-15129030 Msa0280430:intron 20.0%
!! AAAAACTATAGATCAAACTA+TGG + chr2_3:15129471-15129490 Msa0280430:intron 20.0%
!! TCAAAATCTATTTGCAAAAA+AGG - chr2_3:15129580-15129599 None:intergenic 20.0%
!!! ATTGCTAATTTTTGAATTTG+GGG + chr2_3:15129605-15129624 Msa0280430:intron 20.0%
!!! TATTCCTATTTTTTCTTTGT+AGG - chr2_3:15129948-15129967 None:intergenic 20.0%
!!! TCATATGTTCAACATTTTAA+TGG - chr2_3:15130421-15130440 None:intergenic 20.0%
!! TATAATACCAGAACATAAAA+AGG - chr2_3:15130768-15130787 None:intergenic 20.0%
!! ATTATATGTTGTATTACTAG+TGG + chr2_3:15130782-15130801 Msa0280430:intron 20.0%
!!! ATGTATTTTGATTGAATCAT+AGG + chr2_3:15130974-15130993 Msa0280430:intron 20.0%
!!! TGTATTTTGATTGAATCATA+GGG + chr2_3:15130975-15130994 Msa0280430:intron 20.0%
!!! GTAAATTTCTAGATAGATTT+CGG - chr2_3:15131088-15131107 None:intergenic 20.0%
!!! AGAAAAGTATGTTAATTGAT+TGG - chr2_3:15131118-15131137 None:intergenic 20.0%
!!! TACTTTTCTTATATAACAGT+TGG + chr2_3:15131129-15131148 Msa0280430:intron 20.0%
!! AATATAATAGGAACTTCTTT+AGG - chr2_3:15131433-15131452 None:intergenic 20.0%
!! AGAAGTTCCTATTATATTAA+TGG + chr2_3:15131435-15131454 Msa0280430:three_prime_UTR 20.0%
!!! ATTGATTCAGTTTTTCTTTG+TGG + chr2_3:15128240-15128259 Msa0280430:intron 25.0%
!! TTGATTCAGTTTTTCTTTGT+GGG + chr2_3:15128241-15128260 Msa0280430:intron 25.0%
!!! AGAATGAGGTTTTTAGTTAT+TGG + chr2_3:15128300-15128319 Msa0280430:intron 25.0%
!!! GAATGAGGTTTTTAGTTATT+GGG + chr2_3:15128301-15128320 Msa0280430:intron 25.0%
!!! TTTTAGTTATTGGGAATTAC+AGG + chr2_3:15128310-15128329 Msa0280430:intron 25.0%
! TTTAGTTATTGGGAATTACA+GGG + chr2_3:15128311-15128330 Msa0280430:intron 25.0%
! TTAATGACTCTATAAACAAG+TGG + chr2_3:15128463-15128482 Msa0280430:intron 25.0%
!!! TAGATTTTAAGTTAGATGGT+TGG + chr2_3:15128511-15128530 Msa0280430:intron 25.0%
!!! AGATTTTAAGTTAGATGGTT+GGG + chr2_3:15128512-15128531 Msa0280430:intron 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG - chr2_3:15128594-15128613 None:intergenic 25.0%
!! TTTTTGCTTATAATAGTGAC+AGG - chr2_3:15128635-15128654 None:intergenic 25.0%
!! CATTGATTAACATCAATATC+TGG + chr2_3:15128670-15128689 Msa0280430:intron 25.0%
!! TCAATATCTGGTCTATATTT+TGG + chr2_3:15128682-15128701 Msa0280430:intron 25.0%
! TATTCAATGAACCTAAAATG+TGG + chr2_3:15128732-15128751 Msa0280430:intron 25.0%
!!! AACCTAAAATGTGGTTTTTT+AGG + chr2_3:15128741-15128760 Msa0280430:intron 25.0%
!!! TAAAATGTGGTTTTTTAGGT+GGG + chr2_3:15128745-15128764 Msa0280430:intron 25.0%
! TACTTAGGTTCTATTTGAAT+TGG - chr2_3:15128966-15128985 None:intergenic 25.0%
! ACCTAAGTACAATAAGTATA+TGG + chr2_3:15128977-15128996 Msa0280430:intron 25.0%
! TCCATATACTTATTGTACTT+AGG - chr2_3:15128981-15129000 None:intergenic 25.0%
! ATGCAATTCTAACTTAATGA+TGG + chr2_3:15129001-15129020 Msa0280430:intron 25.0%
!! CTATTTCTTACTACTTATGT+AGG - chr2_3:15129439-15129458 None:intergenic 25.0%
! ACATAAGTAGTAAGAAATAG+AGG + chr2_3:15129439-15129458 Msa0280430:intron 25.0%
! CATAAGTAGTAAGAAATAGA+GGG + chr2_3:15129440-15129459 Msa0280430:intron 25.0%
!! GTTTGATCTATAGTTTTTCT+TGG - chr2_3:15129469-15129488 None:intergenic 25.0%
! AATCTATTTGCAAAAAAGGT+GGG - chr2_3:15129576-15129595 None:intergenic 25.0%
! AAATCTATTTGCAAAAAAGG+TGG - chr2_3:15129577-15129596 None:intergenic 25.0%
!! TTGCTAATTTTTGAATTTGG+GGG + chr2_3:15129606-15129625 Msa0280430:intron 25.0%
! AAAGATGATGAAAGATCATT+AGG + chr2_3:15129646-15129665 Msa0280430:intron 25.0%
!!! GAGTAATGAATAAGTTGATT+CGG + chr2_3:15129696-15129715 Msa0280430:intron 25.0%
! ACAATACTTGTAATATTGCA+TGG + chr2_3:15129854-15129873 Msa0280430:intron 25.0%
! TAAAGATGCGAATCTTATAT+TGG + chr2_3:15129915-15129934 Msa0280430:intron 25.0%
! TATTTACTTCGAAATCTCTA+TGG - chr2_3:15130168-15130187 None:intergenic 25.0%
! ATAGAGATTTCGAAGTAAAT+AGG + chr2_3:15130167-15130186 Msa0280430:intron 25.0%
!!! TAAATACTCAAGTTGAAAAC+TGG - chr2_3:15130593-15130612 None:intergenic 25.0%
!! TCTGAAATTTCTAAAAGCAT+AGG + chr2_3:15130614-15130633 Msa0280430:intron 25.0%
! ATTTCTATACATAACTTCAG+GGG - chr2_3:15130883-15130902 None:intergenic 25.0%
! GATTTCTATACATAACTTCA+GGG - chr2_3:15130884-15130903 None:intergenic 25.0%
! TGATTTCTATACATAACTTC+AGG - chr2_3:15130885-15130904 None:intergenic 25.0%
! TATATAACAGTTGGACAAAA+AGG + chr2_3:15131138-15131157 Msa0280430:intron 25.0%
!!! TAAATCACATTCTGAAACAT+TGG - chr2_3:15131253-15131272 None:intergenic 25.0%
! GATGATATGATATAGTTCAT+TGG + chr2_3:15131334-15131353 Msa0280430:three_prime_UTR 25.0%
! TGCTTCACCATTAATATAAT+AGG - chr2_3:15131445-15131464 None:intergenic 25.0%
! TATTATATTAATGGTGAAGC+AGG + chr2_3:15131444-15131463 Msa0280430:three_prime_UTR 25.0%
! ATTATATTAATGGTGAAGCA+GGG + chr2_3:15131445-15131464 Msa0280430:three_prime_UTR 25.0%
! AATATGGAATGATAAAACCA+TGG - chr2_3:15131501-15131520 None:intergenic 25.0%
! TAGCGTTTCTGAATTTTTCT+AGG + chr2_3:15127972-15127991 Msa0280430:five_prime_UTR 30.0%
! AGCGTTTCTGAATTTTTCTA+GGG + chr2_3:15127973-15127992 Msa0280430:five_prime_UTR 30.0%
TTAGTTATTGGGAATTACAG+GGG + chr2_3:15128312-15128331 Msa0280430:intron 30.0%
CATTGAATAACTAACGTATC+TGG - chr2_3:15128721-15128740 None:intergenic 30.0%
! CACCTAAAAAACCACATTTT+AGG - chr2_3:15128746-15128765 None:intergenic 30.0%
!!! CTAAAATGTGGTTTTTTAGG+TGG + chr2_3:15128744-15128763 Msa0280430:intron 30.0%
!! AGCTTATTTTCATAAGCTCT+TGG - chr2_3:15128839-15128858 None:intergenic 30.0%
! CTTTTCATAACTTTGGATGA+AGG - chr2_3:15129078-15129097 None:intergenic 30.0%
CTTCATCCAAAGTTATGAAA+AGG + chr2_3:15129076-15129095 Msa0280430:intron 30.0%
TAGAGGAAGATGTAAACAAT+AGG + chr2_3:15129099-15129118 Msa0280430:intron 30.0%
AACTTTACTGCACAACTATA+AGG + chr2_3:15129206-15129225 Msa0280430:intron 30.0%
TGGTGTCTACAAAGAAAAAT+AGG + chr2_3:15129322-15129341 Msa0280430:intron 30.0%
ATCAAACTATGGTGATTTAG+AGG + chr2_3:15129482-15129501 Msa0280430:intron 30.0%
TTATCTTTGAACTTGATGCA+TGG + chr2_3:15129513-15129532 Msa0280430:intron 30.0%
ATCTATTTGCAAAAAAGGTG+GGG - chr2_3:15129575-15129594 None:intergenic 30.0%
!! GAATAAGTTGATTCGGTTAA+AGG + chr2_3:15129703-15129722 Msa0280430:intron 30.0%
ACAAGCACGATTAAAATGTT+GGG + chr2_3:15129730-15129749 Msa0280430:intron 30.0%
!! AATTTTCCTTCAGGTTTGAA+TGG - chr2_3:15129822-15129841 None:intergenic 30.0%
TATTGCATGGAATTGAATGT+TGG + chr2_3:15129867-15129886 Msa0280430:intron 30.0%
ATGCGAATCTTATATTGGAT+TGG + chr2_3:15129920-15129939 Msa0280430:intron 30.0%
TTCAATGATTAGAGAGAGAT+AGG + chr2_3:15129972-15129991 Msa0280430:intron 30.0%
TCAATGATTAGAGAGAGATA+GGG + chr2_3:15129973-15129992 Msa0280430:intron 30.0%
! AACATGTTTTCTACAATACG+AGG - chr2_3:15130004-15130023 None:intergenic 30.0%
ATAGAGGAAGTCAATATTGT+AGG + chr2_3:15130137-15130156 Msa0280430:intron 30.0%
CGAAGTAAATAGGTTATCTT+CGG + chr2_3:15130177-15130196 Msa0280430:intron 30.0%
! AAAACCCTTTTCCATTAGAT+GGG - chr2_3:15130253-15130272 None:intergenic 30.0%
!!! ATTTTGGGATTACTTACACA+AGG + chr2_3:15130312-15130331 Msa0280430:intron 30.0%
AAATGTTGAACATATGAAGC+AGG + chr2_3:15130424-15130443 Msa0280430:intron 30.0%
AATGTTGAACATATGAAGCA+GGG + chr2_3:15130425-15130444 Msa0280430:intron 30.0%
GTTGAAATTTACCAGTGTTT+GGG + chr2_3:15130447-15130466 Msa0280430:intron 30.0%
AATTTAAGAACTTTGTCTCG+AGG - chr2_3:15130513-15130532 None:intergenic 30.0%
! GAAATTTCTAAAAGCATAGG+AGG + chr2_3:15130617-15130636 Msa0280430:intron 30.0%
GTTCATCATTACAATGCAAA+GGG - chr2_3:15130746-15130765 None:intergenic 30.0%
! TGATGAACCTTTTTATGTTC+TGG + chr2_3:15130758-15130777 Msa0280430:intron 30.0%
!! AAGTACTTGTTTAGTTCTGA+AGG + chr2_3:15130812-15130831 Msa0280430:intron 30.0%
TTTACAAATACAGCCAAAAC+AGG - chr2_3:15130924-15130943 None:intergenic 30.0%
TATAATTGCAAACGAACTAG+AGG + chr2_3:15131041-15131060 Msa0280430:CDS 30.0%
TCACATCATAGTATACATTG+AGG - chr2_3:15131314-15131333 None:intergenic 30.0%
! TTTAGGACCAGAAAATTTGA+GGG - chr2_3:15131416-15131435 None:intergenic 30.0%
!! TTCCATATTTTGTTGCTTGT+TGG + chr2_3:15131512-15131531 Msa0280430:three_prime_UTR 30.0%
!! TCCATATTTTGTTGCTTGTT+GGG + chr2_3:15131513-15131532 Msa0280430:three_prime_UTR 30.0%
AGTGCAAGTAACAAAATAGT+TGG - chr2_3:15131543-15131562 None:intergenic 30.0%
TTCAGAAACGCTAAACTACA+CGG - chr2_3:15127965-15127984 None:intergenic 35.0%
AAGAGAAGAGCGAACAAAAA+TGG + chr2_3:15128020-15128039 Msa0280430:exon 35.0%
! GTTCTTCTGTGTGAAGTTTT+TGG + chr2_3:15128277-15128296 Msa0280430:intron 35.0%
!! TGTGAAGTTTTTGGAGAATG+AGG + chr2_3:15128286-15128305 Msa0280430:intron 35.0%
TAGTTATTGGGAATTACAGG+GGG + chr2_3:15128313-15128332 Msa0280430:intron 35.0%
AGAGATGTGAAGTTAAGTCT+TGG + chr2_3:15128556-15128575 Msa0280430:intron 35.0%
GGAAACACAATATTCCTGTT+TGG + chr2_3:15128577-15128596 Msa0280430:intron 35.0%
!! AGTGACAGGAATGGATTAAA+TGG - chr2_3:15128621-15128640 None:intergenic 35.0%
GCTTATAATAGTGACAGGAA+TGG - chr2_3:15128630-15128649 None:intergenic 35.0%
! ATGCTGCAATTCATCCTTTT+TGG + chr2_3:15129042-15129061 Msa0280430:intron 35.0%
!! ATTCATCCTTTTTGGTACCT+TGG + chr2_3:15129050-15129069 Msa0280430:intron 35.0%
!! TTCATCCTTTTTGGTACCTT+GGG + chr2_3:15129051-15129070 Msa0280430:intron 35.0%
! CCTCTACCTTTTCATAACTT+TGG - chr2_3:15129085-15129104 None:intergenic 35.0%
CCAAAGTTATGAAAAGGTAG+AGG + chr2_3:15129082-15129101 Msa0280430:intron 35.0%
!! TCTAAGCAGAGTTGATGAAA+AGG + chr2_3:15129123-15129142 Msa0280430:intron 35.0%
AAAGAAACACTCAAACCTTG+AGG + chr2_3:15129181-15129200 Msa0280430:intron 35.0%
CATGGAGTTGAATATTGGTA+TGG + chr2_3:15129241-15129260 Msa0280430:intron 35.0%
GAGTTGAATATTGGTATGGA+TGG + chr2_3:15129245-15129264 Msa0280430:intron 35.0%
ACAGCACTAAATTTCCTTGT+TGG - chr2_3:15129278-15129297 None:intergenic 35.0%
TAGAGATGAGAATCTTGTAC+TGG + chr2_3:15129297-15129316 Msa0280430:intron 35.0%
ATGAGAATCTTGTACTGGAT+TGG + chr2_3:15129302-15129321 Msa0280430:intron 35.0%
CATACCAAACAACCTAAGAT+GGG - chr2_3:15129405-15129424 None:intergenic 35.0%
ACATACCAAACAACCTAAGA+TGG - chr2_3:15129406-15129425 None:intergenic 35.0%
TTTGAACTTGATGCATGGAA+GGG + chr2_3:15129518-15129537 Msa0280430:intron 35.0%
ATTTGGGGGTAAATTACACA+TGG + chr2_3:15129620-15129639 Msa0280430:intron 35.0%
! TGAAAGATCATTAGGCCTTT+TGG + chr2_3:15129654-15129673 Msa0280430:intron 35.0%
!!! ATTAGGCCTTTTGGTTTGAT+GGG + chr2_3:15129663-15129682 Msa0280430:intron 35.0%
!! TAAGTTGATTCGGTTAAAGG+TGG + chr2_3:15129706-15129725 Msa0280430:intron 35.0%
CACAAGCACGATTAAAATGT+TGG + chr2_3:15129729-15129748 Msa0280430:intron 35.0%
CAAGCACGATTAAAATGTTG+GGG + chr2_3:15129731-15129750 Msa0280430:intron 35.0%
TCTAAGTAGAGTGGATCAAA+TGG + chr2_3:15129760-15129779 Msa0280430:intron 35.0%
! TGAGCAGTAAATTTTCCTTC+AGG - chr2_3:15129831-15129850 None:intergenic 35.0%
GGTGCCTACAAAGAAAAAAT+AGG + chr2_3:15129941-15129960 Msa0280430:intron 35.0%
ACATGTTAGAGTTTCGTCTT+AGG + chr2_3:15130017-15130036 Msa0280430:intron 35.0%
GAGAAAACCTGTATAAGCAA+TGG + chr2_3:15130057-15130076 Msa0280430:intron 35.0%
AAACCTGTATAAGCAATGGT+TGG + chr2_3:15130061-15130080 Msa0280430:intron 35.0%
AACCTGTATAAGCAATGGTT+GGG + chr2_3:15130062-15130081 Msa0280430:intron 35.0%
AGTCATACAGTAAGAGATAG+AGG + chr2_3:15130121-15130140 Msa0280430:intron 35.0%
AAATAGGTTATCTTCGGACA+TGG + chr2_3:15130183-15130202 Msa0280430:intron 35.0%
! CAAAACCCTTTTCCATTAGA+TGG - chr2_3:15130254-15130273 None:intergenic 35.0%
! CATCTAATGGAAAAGGGTTT+TGG + chr2_3:15130252-15130271 Msa0280430:intron 35.0%
GAAGTTCATGAAAGACCATT+AGG + chr2_3:15130338-15130357 Msa0280430:intron 35.0%
!!! ATTAGGCCTTTTGGCTTAAT+GGG + chr2_3:15130355-15130374 Msa0280430:intron 35.0%
!! GTAATGACTAGGTTGGTTAA+AGG + chr2_3:15130390-15130409 Msa0280430:intron 35.0%
GGTTGAAATTTACCAGTGTT+TGG + chr2_3:15130446-15130465 Msa0280430:intron 35.0%
AACAAGCTAGTGTAAGTACT+AGG + chr2_3:15130478-15130497 Msa0280430:intron 35.0%
TAGTGTAAGTACTAGGAACA+GGG + chr2_3:15130485-15130504 Msa0280430:intron 35.0%
! GAAAACTGGCACAGTTTTTA+GGG - chr2_3:15130579-15130598 None:intergenic 35.0%
! TGAAAACTGGCACAGTTTTT+AGG - chr2_3:15130580-15130599 None:intergenic 35.0%
ATCTTTGTTGCGCAAATGAA+TGG - chr2_3:15130671-15130690 None:intergenic 35.0%
GGTTCATCATTACAATGCAA+AGG - chr2_3:15130747-15130766 None:intergenic 35.0%
ATAACAGTTGGACAAAAAGG+TGG + chr2_3:15131141-15131160 Msa0280430:intron 35.0%
TAGTGTGGTAGAAACAAACA+AGG + chr2_3:15131226-15131245 Msa0280430:exon 35.0%
AGTGTGGTAGAAACAAACAA+GGG + chr2_3:15131227-15131246 Msa0280430:exon 35.0%
TTAGGACCAGAAAATTTGAG+GGG - chr2_3:15131415-15131434 None:intergenic 35.0%
!! CTTTAGGACCAGAAAATTTG+AGG - chr2_3:15131417-15131436 None:intergenic 35.0%
TGGAATGATAAAACCATGGA+AGG - chr2_3:15131497-15131516 None:intergenic 35.0%
AGAAGAGCGAACAAAAATGG+AGG + chr2_3:15128023-15128042 Msa0280430:exon 40.0%
GAAGAGCGAACAAAAATGGA+GGG + chr2_3:15128024-15128043 Msa0280430:exon 40.0%
ATTGGAATGCTATGCGTTTG+AGG + chr2_3:15128202-15128221 Msa0280430:CDS 40.0%
AGTTATTGGGAATTACAGGG+GGG + chr2_3:15128314-15128333 Msa0280430:intron 40.0%
!! AAGCAGAGTTGATGAAAAGG+AGG + chr2_3:15129126-15129145 Msa0280430:intron 40.0%
! GTGCAGTAAAGTTTTCCTCA+AGG - chr2_3:15129199-15129218 None:intergenic 40.0%
TACTGCACAACTATAAGGCT+TGG + chr2_3:15129211-15129230 Msa0280430:intron 40.0%
TGCTGCATGGAGTTGAATAT+TGG + chr2_3:15129236-15129255 Msa0280430:intron 40.0%
TGGATGGTATACAACCAACA+AGG + chr2_3:15129261-15129280 Msa0280430:intron 40.0%
CTTTGAACTTGATGCATGGA+AGG + chr2_3:15129517-15129536 Msa0280430:intron 40.0%
TGATGCATGGAAGGGATTTA+TGG + chr2_3:15129526-15129545 Msa0280430:intron 40.0%
ATTTGCAAAAAAGGTGGGGT+CGG - chr2_3:15129571-15129590 None:intergenic 40.0%
!!! CATTAGGCCTTTTGGTTTGA+TGG + chr2_3:15129662-15129681 Msa0280430:intron 40.0%
!!! TTAGGCCTTTTGGTTTGATG+GGG + chr2_3:15129664-15129683 Msa0280430:intron 40.0%
AATAGCCCCATCAAACCAAA+AGG - chr2_3:15129672-15129691 None:intergenic 40.0%
GGGATATGATCTAAGTAGAG+TGG + chr2_3:15129751-15129770 Msa0280430:intron 40.0%
AAGTAGAGTGGATCAAATGG+AGG + chr2_3:15129763-15129782 Msa0280430:intron 40.0%
! GAAGTACCATTCAAACCTGA+AGG + chr2_3:15129813-15129832 Msa0280430:intron 40.0%
GCATGGAATTGAATGTTGGA+TGG + chr2_3:15129871-15129890 Msa0280430:intron 40.0%
TGTTAGAGTTTCGTCTTAGG+TGG + chr2_3:15130020-15130039 Msa0280430:intron 40.0%
AGTTTCGTCTTAGGTGGTTT+GGG + chr2_3:15130026-15130045 Msa0280430:intron 40.0%
TTATCTTCGGACATGGTACA+TGG + chr2_3:15130190-15130209 Msa0280430:intron 40.0%
ATATAGCCGATCCCATCTAA+TGG + chr2_3:15130239-15130258 Msa0280430:intron 40.0%
! CCTTTTCCATTAGATGGGAT+CGG - chr2_3:15130248-15130267 None:intergenic 40.0%
CGATCCCATCTAATGGAAAA+GGG + chr2_3:15130246-15130265 Msa0280430:intron 40.0%
!!! GGGTTTTGGTTGATGCAAAT+AGG + chr2_3:15130266-15130285 Msa0280430:intron 40.0%
! TGGTTGATGCAAATAGGTTG+AGG + chr2_3:15130272-15130291 Msa0280430:intron 40.0%
! TGAAAGACCATTAGGCCTTT+TGG + chr2_3:15130346-15130365 Msa0280430:intron 40.0%
CATTAAGCCAAAAGGCCTAA+TGG - chr2_3:15130356-15130375 None:intergenic 40.0%
!!! CATTAGGCCTTTTGGCTTAA+TGG + chr2_3:15130354-15130373 Msa0280430:intron 40.0%
AATGGTCCCATTAAGCCAAA+AGG - chr2_3:15130364-15130383 None:intergenic 40.0%
CCTAGTCATTACCAAGTGAA+TGG - chr2_3:15130382-15130401 None:intergenic 40.0%
!! CCATTCACTTGGTAATGACT+AGG + chr2_3:15130379-15130398 Msa0280430:intron 40.0%
!! TCACTTGGTAATGACTAGGT+TGG + chr2_3:15130383-15130402 Msa0280430:intron 40.0%
CTAGTGTAAGTACTAGGAAC+AGG + chr2_3:15130484-15130503 Msa0280430:intron 40.0%
ACAAATACAGCCAAAACAGG+AGG - chr2_3:15130921-15130940 None:intergenic 40.0%
TTCCTTGTCTCTCTAAACTG+TGG + chr2_3:15130950-15130969 Msa0280430:intron 40.0%
TACCACAGTTTAGAGAGACA+AGG - chr2_3:15130955-15130974 None:intergenic 40.0%
CTAGTGAAGCAAATGACGAA+TGG - chr2_3:15131209-15131228 None:intergenic 40.0%
TAGGACCAGAAAATTTGAGG+GGG - chr2_3:15131414-15131433 None:intergenic 40.0%
GCCCAACAAGCAACAAAATA+TGG - chr2_3:15131517-15131536 None:intergenic 40.0%
ACTCTGCTGTTGCATGTCTT+TGG - chr2_3:15128082-15128101 None:intergenic 45.0%
! GAACACGAGTTGAATCAAGC+TGG - chr2_3:15128143-15128162 None:intergenic 45.0%
AACTCGTGTTCAAGAAGCCA+TGG + chr2_3:15128152-15128171 Msa0280430:CDS 45.0%
GTTATTGGGAATTACAGGGG+GGG + chr2_3:15128315-15128334 Msa0280430:intron 45.0%
!!! AGGGGGGGTGTAGTTTTTTT+GGG + chr2_3:15128330-15128349 Msa0280430:intron 45.0%
!!! GGGTGTAGTTTTTTTGGGGA+GGG + chr2_3:15128335-15128354 Msa0280430:intron 45.0%
!!! GGTGTAGTTTTTTTGGGGAG+GGG + chr2_3:15128336-15128355 Msa0280430:intron 45.0%
!!! GTGTAGTTTTTTTGGGGAGG+GGG + chr2_3:15128337-15128356 Msa0280430:intron 45.0%
! AAGGACCCAAGGTACCAAAA+AGG - chr2_3:15129059-15129078 None:intergenic 45.0%
AACTTTGGATGAAGGACCCA+AGG - chr2_3:15129070-15129089 None:intergenic 45.0%
ATAAGGCTTGGAATGCTGCA+TGG + chr2_3:15129223-15129242 Msa0280430:intron 45.0%
ACATAGCAGAGTCCCATCTT+AGG + chr2_3:15129390-15129409 Msa0280430:intron 45.0%
! GAGTCCCATCTTAGGTTGTT+TGG + chr2_3:15129398-15129417 Msa0280430:intron 45.0%
GAGTTTCGTCTTAGGTGGTT+TGG + chr2_3:15130025-15130044 Msa0280430:intron 45.0%
CTCCCAACCATTGCTTATAC+AGG - chr2_3:15130067-15130086 None:intergenic 45.0%
!! GGAGTGTTGAGAAGATGGAA+AGG + chr2_3:15130083-15130102 Msa0280430:intron 45.0%
CCGATCCCATCTAATGGAAA+AGG + chr2_3:15130245-15130264 Msa0280430:intron 45.0%
GCTTAATGGGACCATTCACT+TGG + chr2_3:15130368-15130387 Msa0280430:intron 45.0%
GTTGTAACAGACCCAAACAC+TGG - chr2_3:15130461-15130480 None:intergenic 45.0%
!!! ACTGGCACAGTTTTTAGGGT+GGG - chr2_3:15130575-15130594 None:intergenic 45.0%
!! AACTGGCACAGTTTTTAGGG+TGG - chr2_3:15130576-15130595 None:intergenic 45.0%
! AGCCAAAACAGGAGGTACAA+CGG - chr2_3:15130913-15130932 None:intergenic 45.0%
TGGACAAAAAGGTGGCTGAA+AGG + chr2_3:15131149-15131168 Msa0280430:CDS 45.0%
ATCACCTTTATGCTCACGCA+AGG - chr2_3:15131176-15131195 None:intergenic 45.0%
CGTCATTTGCTTCACTAGTG+TGG + chr2_3:15131211-15131230 Msa0280430:exon 45.0%
ACCAGAAAATTTGAGGGGGT+GGG - chr2_3:15131410-15131429 None:intergenic 45.0%
TCAAATGTGACAGCCTTCCA+TGG + chr2_3:15131481-15131500 Msa0280430:three_prime_UTR 45.0%
GAGCGAACAAAAATGGAGGG+TGG + chr2_3:15128027-15128046 Msa0280430:exon 50.0%
AAAATGGAGGGTGGAGACGA+AGG + chr2_3:15128036-15128055 Msa0280430:exon 50.0%
AGAAGCAGCAATGGAAGCCA+TGG - chr2_3:15128172-15128191 None:intergenic 50.0%
AGCTTCAGCAGAAGCAGCAA+TGG - chr2_3:15128181-15128200 None:intergenic 50.0%
CTGCTTCTGCTGAAGCTGAT+TGG + chr2_3:15128184-15128203 Msa0280430:CDS 50.0%
!!! CAGGGGGGGTGTAGTTTTTT+TGG + chr2_3:15128329-15128348 Msa0280430:intron 50.0%
!!! GGGGGGGTGTAGTTTTTTTG+GGG + chr2_3:15128331-15128350 Msa0280430:intron 50.0%
!!! GGGGTGTAGTTTTTTTGGGG+AGG + chr2_3:15128334-15128353 Msa0280430:intron 50.0%
!!! TTTTTTTGGGGAGGGGGTGT+TGG + chr2_3:15128343-15128362 Msa0280430:intron 50.0%
! TTAGGTGGTTTGGGCATGTG+CGG + chr2_3:15130035-15130054 Msa0280430:intron 50.0%
!! GGTTGGGAGTGTTGAGAAGA+TGG + chr2_3:15130078-15130097 Msa0280430:intron 50.0%
TTCGGACATGGTACATGGCA+GGG + chr2_3:15130195-15130214 Msa0280430:intron 50.0%
! TGGTACATGGCAGGGCATTA+TGG + chr2_3:15130203-15130222 Msa0280430:intron 50.0%
!!! CTGGCACAGTTTTTAGGGTG+GGG - chr2_3:15130574-15130593 None:intergenic 50.0%
! CTCCGTTGTACCTCCTGTTT+TGG + chr2_3:15130908-15130927 Msa0280430:intron 50.0%
AGGACCTTGCGTGAGCATAA+AGG + chr2_3:15131169-15131188 Msa0280430:CDS 50.0%
CAGAAAATTTGAGGGGGTGG+GGG - chr2_3:15131408-15131427 None:intergenic 50.0%
CCAGAAAATTTGAGGGGGTG+GGG - chr2_3:15131409-15131428 None:intergenic 50.0%
GACCAGAAAATTTGAGGGGG+TGG - chr2_3:15131411-15131430 None:intergenic 50.0%
GGAAGGCTGTCACATTTGAG+TGG - chr2_3:15131480-15131499 None:intergenic 50.0%
TGGAGACGAAGGAGTGGAGA+TGG + chr2_3:15128047-15128066 Msa0280430:CDS 55.0%
AGACGAAGGAGTGGAGATGG+TGG + chr2_3:15128050-15128069 Msa0280430:CDS 55.0%
CAAGCTGGCGATCTTCAACG+CGG - chr2_3:15128128-15128147 None:intergenic 55.0%
CTTCGGACATGGTACATGGC+AGG + chr2_3:15130194-15130213 Msa0280430:intron 55.0%
! CCCCACCCCCTCAAATTTTC+TGG + chr2_3:15131406-15131425 Msa0280430:three_prime_UTR 55.0%
GGAGGGTGGAGACGAAGGAG+TGG + chr2_3:15128041-15128060 Msa0280430:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 15127938 15131568 15127938 ID=Msa0280430;Name=Msa0280430
chr2_3 mRNA 15127938 15131568 15127938 ID=Msa0280430-mRNA-1;Parent=Msa0280430;Name=Msa0280430-mRNA-1;_AED=0.02;_eAED=0.02;_QI=101|1|1|1|1|1|3|340|110
chr2_3 exon 15127938 15128223 15127938 ID=Msa0280430-mRNA-1:exon:6311;Parent=Msa0280430-mRNA-1
chr2_3 exon 15130996 15131062 15130996 ID=Msa0280430-mRNA-1:exon:6312;Parent=Msa0280430-mRNA-1
chr2_3 exon 15131148 15131568 15131148 ID=Msa0280430-mRNA-1:exon:6313;Parent=Msa0280430-mRNA-1
chr2_3 five_prime_UTR 15127938 15128038 15127938 ID=Msa0280430-mRNA-1:five_prime_utr;Parent=Msa0280430-mRNA-1
chr2_3 CDS 15128039 15128223 15128039 ID=Msa0280430-mRNA-1:cds;Parent=Msa0280430-mRNA-1
chr2_3 CDS 15130996 15131062 15130996 ID=Msa0280430-mRNA-1:cds;Parent=Msa0280430-mRNA-1
chr2_3 CDS 15131148 15131228 15131148 ID=Msa0280430-mRNA-1:cds;Parent=Msa0280430-mRNA-1
chr2_3 three_prime_UTR 15131229 15131568 15131229 ID=Msa0280430-mRNA-1:three_prime_utr;Parent=Msa0280430-mRNA-1
Gene Sequence

>Msa0280430

ATGGAGGGTGGAGACGAAGGAGTGGAGATGGTGGTTGATTCCAAAGACATGCAACAGCAGAGTAAAGCTTTCGATAAACTCACTGACCGCGTTGAAGATCGCCAGCTTGATTCAACTCGTGTTCAAGAAGCCATGGCTTCCATTGCTGCTTCTGCTGAAGCTGATTGGAATGCTATGCGTTTGAGGGAGAAAGAATTAGCTGCTGTTAAGATAAATGCAGCAGATGTTGATATAATTGCAAACGAACTAGAGTTGGACAAAAAGGTGGCTGAAAGGACCTTGCGTGAGCATAAAGGTGATGCAGTTGCTGCCATTCGTCATTTGCTTCACTAG

Protein sequence

>Msa0280430

MEGGDEGVEMVVDSKDMQQQSKAFDKLTDRVEDRQLDSTRVQEAMASIAASAEADWNAMRLREKELAAVKINAADVDIIANELELDKKVAERTLREHKGDAVAAIRHLLH*