AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0610390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0610390 MtrunA17_Chr4g0043221 100.000 98 0 0 1 98 1 98 2.34e-66 194
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0610390 AT1G76860.1 89.796 98 9 1 1 98 1 97 9.87e-59 175
Msa0610390 AT1G21190.1 86.458 96 13 0 3 98 2 97 8.05e-58 173

Find 46 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGTTCCGTTCCTGTTTGTT+AGG 0.219777 4_2:-58092986 Msa0610390:CDS
CATTTCATTGTGAGTGAATC+TGG 0.250832 4_2:-58094492 Msa0610390:five_prime_UTR
ATCATTGGCGTTTAAGCTTA+TGG 0.251620 4_2:+58092678 None:intergenic
CAACATCTTAATATGATTCT+TGG 0.270259 4_2:-58094223 Msa0610390:CDS
GTTTGATGGGGTGTTTGATT+AGG 0.334646 4_2:-58092573 Msa0610390:three_prime_UTR
GACTTCCTGAATCCTAAGTT+TGG 0.356983 4_2:-58092518 Msa0610390:three_prime_UTR
CTAAACCAAACTTAGGATTC+AGG 0.374091 4_2:+58092513 None:intergenic
ATGAACAAGGGTTATACTTA+TGG 0.392555 4_2:-58092733 Msa0610390:three_prime_UTR
CTTGAACCTGGGATGTTTGA+TGG 0.393056 4_2:-58092587 Msa0610390:three_prime_UTR
CGCCATCTCCCCTAACAAAC+AGG 0.401332 4_2:+58092976 None:intergenic
TTCCTGTTTGTTAGGGGAGA+TGG 0.402900 4_2:-58092978 Msa0610390:CDS
TAGGGGAGATGGCGTGATAT+TGG 0.403792 4_2:-58092967 Msa0610390:CDS
TGAAACAAATCAAGAATCAT+TGG 0.427500 4_2:+58092663 None:intergenic
AGTTCCGTTCCTGTTTGTTA+GGG 0.430031 4_2:-58092985 Msa0610390:CDS
AAGCGCAGTGAAGGAGCCTT+TGG 0.436284 4_2:-58094421 Msa0610390:CDS
TTGAACCTGGGATGTTTGAT+GGG 0.449994 4_2:-58092586 Msa0610390:three_prime_UTR
CTTCTAAGTTCTAGTTACAT+TGG 0.450409 4_2:-58092614 Msa0610390:three_prime_UTR
AGACATACGAAGAAATTGTC+AGG 0.452612 4_2:-58094159 Msa0610390:CDS
TACATTGGAGATCTTGAACC+TGG 0.454214 4_2:-58092599 Msa0610390:three_prime_UTR
AGGAAGTCTACAAACTTTGA+AGG 0.454963 4_2:+58092533 None:intergenic
GGAAAAGCTAAACCAAACTT+AGG 0.457822 4_2:+58092506 None:intergenic
GAGGATAATCTAATATCATA+AGG 0.485064 4_2:+58092836 None:intergenic
AGAGGAAGAAAGCGCAGTGA+AGG 0.494057 4_2:-58094430 Msa0610390:CDS
AAGAAGAATGGCGGGGACAG+AGG 0.513464 4_2:-58094448 Msa0610390:exon
AGGAGCCTTTGGATCTCATA+AGG 0.523953 4_2:-58094410 Msa0610390:CDS
ACATTGGAGATCTTGAACCT+GGG 0.534216 4_2:-58092598 Msa0610390:three_prime_UTR
TCATGGAATGCTCATGAACA+AGG 0.539148 4_2:-58092746 Msa0610390:three_prime_UTR
CGTTCTGATAGAGAGCTTCG+TGG 0.548358 4_2:-58094354 Msa0610390:CDS
GAGCTGTTGTTACATAGAAG+TGG 0.562353 4_2:-58092703 Msa0610390:three_prime_UTR
CCACTGAGGACTGCATAACA+TGG 0.569381 4_2:-58092936 Msa0610390:exon
GGGTTATACTTATGGCAGCT+TGG 0.573830 4_2:-58092725 Msa0610390:three_prime_UTR
CTGAGCCTTATGAGATCCAA+AGG 0.575025 4_2:+58094405 None:intergenic
GTTCCGTTCCTGTTTGTTAG+GGG 0.578832 4_2:-58092984 Msa0610390:CDS
AACACCCCATCAAACATCCC+AGG 0.610009 4_2:+58092581 None:intergenic
ACTAGCAAACATGCATGTTG+AGG 0.616942 4_2:+58092817 None:intergenic
CACGAAGCTCTCTATCAGAA+CGG 0.619250 4_2:+58094355 None:intergenic
CCATGTTATGCAGTCCTCAG+TGG 0.619717 4_2:+58092936 None:intergenic
TGTTATGCAGTCCTCAGTGG+TGG 0.628383 4_2:+58092939 None:intergenic
TGAACCTGGGATGTTTGATG+GGG 0.635063 4_2:-58092585 Msa0610390:three_prime_UTR
TGTTGAAGAAATTGTTACAA+CGG 0.651927 4_2:-58094197 Msa0610390:CDS
CATGGAATGCTCATGAACAA+GGG 0.663566 4_2:-58092745 Msa0610390:three_prime_UTR
GACATACGAAGAAATTGTCA+GGG 0.666267 4_2:-58094158 Msa0610390:intron
TCTCCCCTAACAAACAGGAA+CGG 0.688766 4_2:+58092981 None:intergenic
ATCTAATATCATAAGGAACG+AGG 0.696193 4_2:+58092843 None:intergenic
TCTGATTGCAGACTACAAAG+CGG 0.697746 4_2:-58093010 Msa0610390:intron
TATTGGTTTCTCCACCACTG+AGG 0.734600 4_2:-58092950 Msa0610390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGAAACTTTTGAATAAAATT+TGG - chr4_2:58093615-58093634 Msa0610390:intron 15.0%
!!! AGAAACTTTTGAATAAAATT+TGG - chr4_2:58093615-58093634 Msa0610390:intron 15.0%
!! TAATTTCAATTTCAATTTCC+AGG - chr4_2:58092750-58092769 Msa0610390:three_prime_UTR 20.0%
!! AATTTAAATTCTCCAATTTG+AGG - chr4_2:58093352-58093371 Msa0610390:intron 20.0%
!!! AATTTTTTAGTTCCTCAAAT+TGG + chr4_2:58093367-58093386 None:intergenic 20.0%
!! GAACTAAAAAATTGAAATAG+CGG - chr4_2:58093374-58093393 Msa0610390:intron 20.0%
!!! TTGAGAGTATTATAAAATGA+GGG + chr4_2:58093449-58093468 None:intergenic 20.0%
!!! TTTTGAATAAAATTTGGTTG+TGG - chr4_2:58093621-58093640 Msa0610390:intron 20.0%
!!! ATCACAATTCTGAAAAAATA+AGG + chr4_2:58093770-58093789 None:intergenic 20.0%
!!! TTTTTTATAGACCATTTTGA+TGG + chr4_2:58093913-58093932 None:intergenic 20.0%
!! CAAAATGGTCTATAAAAAAA+AGG - chr4_2:58093914-58093933 Msa0610390:intron 20.0%
!! TAATTTCAATTTCAATTTCC+AGG - chr4_2:58092750-58092769 Msa0610390:three_prime_UTR 20.0%
!! AATTTAAATTCTCCAATTTG+AGG - chr4_2:58093352-58093371 Msa0610390:intron 20.0%
!!! AATTTTTTAGTTCCTCAAAT+TGG + chr4_2:58093367-58093386 None:intergenic 20.0%
!! GAACTAAAAAATTGAAATAG+CGG - chr4_2:58093374-58093393 Msa0610390:intron 20.0%
!!! TTGAGAGTATTATAAAATGA+GGG + chr4_2:58093449-58093468 None:intergenic 20.0%
!!! TTTTGAATAAAATTTGGTTG+TGG - chr4_2:58093621-58093640 Msa0610390:intron 20.0%
!!! ATCACAATTCTGAAAAAATA+AGG + chr4_2:58093770-58093789 None:intergenic 20.0%
!!! TTTTTTATAGACCATTTTGA+TGG + chr4_2:58093913-58093932 None:intergenic 20.0%
!! CAAAATGGTCTATAAAAAAA+AGG - chr4_2:58093914-58093933 Msa0610390:intron 20.0%
! TGAAAGAAAAAAGAGATGAA+AGG + chr4_2:58092702-58092721 None:intergenic 25.0%
! CAACATCTTAATATGATTCT+TGG - chr4_2:58092781-58092800 Msa0610390:three_prime_UTR 25.0%
! TGTTGAAGAAATTGTTACAA+CGG - chr4_2:58092807-58092826 Msa0610390:three_prime_UTR 25.0%
!! AAGGATTATTGTAGTTTGTA+AGG - chr4_2:58092974-58092993 Msa0610390:CDS 25.0%
!! TAAAAAATTGAAATAGCGGA+GGG - chr4_2:58093378-58093397 Msa0610390:intron 25.0%
!!! TGAGAGTATTATAAAATGAG+GGG + chr4_2:58093448-58093467 None:intergenic 25.0%
!!! GTTGAGAGTATTATAAAATG+AGG + chr4_2:58093450-58093469 None:intergenic 25.0%
! TTATTCAAAAGTTTCTCCTT+CGG + chr4_2:58093611-58093630 None:intergenic 25.0%
!!! TATTTTTTCGATTAGATTGC+TGG - chr4_2:58093724-58093743 Msa0610390:intron 25.0%
!!! ATTTTGAAGATACTTTTCCT+TGG - chr4_2:58093954-58093973 Msa0610390:intron 25.0%
! AGAAAAACAAAAATCATCCA+AGG + chr4_2:58093974-58093993 None:intergenic 25.0%
! GAGGATAATCTAATATCATA+AGG + chr4_2:58094171-58094190 None:intergenic 25.0%
! TGAAACAAATCAAGAATCAT+TGG + chr4_2:58094344-58094363 None:intergenic 25.0%
! TGAAAGAAAAAAGAGATGAA+AGG + chr4_2:58092702-58092721 None:intergenic 25.0%
! CAACATCTTAATATGATTCT+TGG - chr4_2:58092781-58092800 Msa0610390:three_prime_UTR 25.0%
! TGTTGAAGAAATTGTTACAA+CGG - chr4_2:58092807-58092826 Msa0610390:three_prime_UTR 25.0%
!! AAGGATTATTGTAGTTTGTA+AGG - chr4_2:58092974-58092993 Msa0610390:CDS 25.0%
!! TAAAAAATTGAAATAGCGGA+GGG - chr4_2:58093378-58093397 Msa0610390:intron 25.0%
!!! TGAGAGTATTATAAAATGAG+GGG + chr4_2:58093448-58093467 None:intergenic 25.0%
!!! GTTGAGAGTATTATAAAATG+AGG + chr4_2:58093450-58093469 None:intergenic 25.0%
! TTATTCAAAAGTTTCTCCTT+CGG + chr4_2:58093611-58093630 None:intergenic 25.0%
!!! TATTTTTTCGATTAGATTGC+TGG - chr4_2:58093724-58093743 Msa0610390:intron 25.0%
!!! ATTTTGAAGATACTTTTCCT+TGG - chr4_2:58093954-58093973 Msa0610390:intron 25.0%
! AGAAAAACAAAAATCATCCA+AGG + chr4_2:58093974-58093993 None:intergenic 25.0%
! GAGGATAATCTAATATCATA+AGG + chr4_2:58094171-58094190 None:intergenic 25.0%
! TGAAACAAATCAAGAATCAT+TGG + chr4_2:58094344-58094363 None:intergenic 25.0%
AAGAAGAAGAAGAAGAAGAA+TGG - chr4_2:58092544-58092563 Msa0610390:three_prime_UTR 30.0%
!! ACAGTTGTTGATTTATTGTC+AGG - chr4_2:58092910-58092929 Msa0610390:three_prime_UTR 30.0%
!! CAGTTGTTGATTTATTGTCA+GGG - chr4_2:58092911-58092930 Msa0610390:three_prime_UTR 30.0%
TACCTTCTTCAGTTTGATAA+AGG - chr4_2:58092955-58092974 Msa0610390:CDS 30.0%
ATCCTTTATCAAACTGAAGA+AGG + chr4_2:58092960-58092979 None:intergenic 30.0%
!! GTAGTTTGTAAGGTGTTTTA+AGG - chr4_2:58092984-58093003 Msa0610390:CDS 30.0%
ACACCTTAAATCTGAATTGT+TGG - chr4_2:58093136-58093155 Msa0610390:intron 30.0%
CTAAAAAATTGAAATAGCGG+AGG - chr4_2:58093377-58093396 Msa0610390:intron 30.0%
! ATGCTTAGGAGAATTTTTCA+AGG + chr4_2:58093424-58093443 None:intergenic 30.0%
AGGTCAATAGTTGAAAGAAA+AGG + chr4_2:58093750-58093769 None:intergenic 30.0%
! ATATCTACTAACTTGTGATC+TGG - chr4_2:58093788-58093807 Msa0610390:intron 30.0%
! TATCTACTAACTTGTGATCT+GGG - chr4_2:58093789-58093808 Msa0610390:intron 30.0%
! AGATGATCCTTTTCTTATCT+GGG + chr4_2:58093827-58093846 None:intergenic 30.0%
! AAGATGATCCTTTTCTTATC+TGG + chr4_2:58093828-58093847 None:intergenic 30.0%
GATAAGAAAAGGATCATCTT+TGG - chr4_2:58093828-58093847 Msa0610390:intron 30.0%
!! TTATAGACCATTTTGATGGT+TGG + chr4_2:58093909-58093928 None:intergenic 30.0%
ATCTAATATCATAAGGAACG+AGG + chr4_2:58094164-58094183 None:intergenic 30.0%
!! TCTTTTTAGCATGAGAATCA+TGG - chr4_2:58094241-58094260 Msa0610390:intron 30.0%
ATGAACAAGGGTTATACTTA+TGG - chr4_2:58094271-58094290 Msa0610390:intron 30.0%
! CTTCTAAGTTCTAGTTACAT+TGG - chr4_2:58094390-58094409 Msa0610390:CDS 30.0%
AAGAAGAAGAAGAAGAAGAA+TGG - chr4_2:58092544-58092563 Msa0610390:three_prime_UTR 30.0%
!! ACAGTTGTTGATTTATTGTC+AGG - chr4_2:58092910-58092929 Msa0610390:three_prime_UTR 30.0%
!! CAGTTGTTGATTTATTGTCA+GGG - chr4_2:58092911-58092930 Msa0610390:three_prime_UTR 30.0%
TACCTTCTTCAGTTTGATAA+AGG - chr4_2:58092955-58092974 Msa0610390:CDS 30.0%
ATCCTTTATCAAACTGAAGA+AGG + chr4_2:58092960-58092979 None:intergenic 30.0%
!! GTAGTTTGTAAGGTGTTTTA+AGG - chr4_2:58092984-58093003 Msa0610390:CDS 30.0%
ACACCTTAAATCTGAATTGT+TGG - chr4_2:58093136-58093155 Msa0610390:intron 30.0%
CTAAAAAATTGAAATAGCGG+AGG - chr4_2:58093377-58093396 Msa0610390:intron 30.0%
! ATGCTTAGGAGAATTTTTCA+AGG + chr4_2:58093424-58093443 None:intergenic 30.0%
AGGTCAATAGTTGAAAGAAA+AGG + chr4_2:58093750-58093769 None:intergenic 30.0%
! ATATCTACTAACTTGTGATC+TGG - chr4_2:58093788-58093807 Msa0610390:intron 30.0%
! TATCTACTAACTTGTGATCT+GGG - chr4_2:58093789-58093808 Msa0610390:intron 30.0%
! AGATGATCCTTTTCTTATCT+GGG + chr4_2:58093827-58093846 None:intergenic 30.0%
! AAGATGATCCTTTTCTTATC+TGG + chr4_2:58093828-58093847 None:intergenic 30.0%
GATAAGAAAAGGATCATCTT+TGG - chr4_2:58093828-58093847 Msa0610390:intron 30.0%
!! TTATAGACCATTTTGATGGT+TGG + chr4_2:58093909-58093928 None:intergenic 30.0%
ATCTAATATCATAAGGAACG+AGG + chr4_2:58094164-58094183 None:intergenic 30.0%
!! TCTTTTTAGCATGAGAATCA+TGG - chr4_2:58094241-58094260 Msa0610390:intron 30.0%
ATGAACAAGGGTTATACTTA+TGG - chr4_2:58094271-58094290 Msa0610390:intron 30.0%
! CTTCTAAGTTCTAGTTACAT+TGG - chr4_2:58094390-58094409 Msa0610390:CDS 30.0%
CATTTCATTGTGAGTGAATC+TGG - chr4_2:58092512-58092531 Msa0610390:three_prime_UTR 35.0%
AAGAAGAAGAAGAAGAATGG+CGG - chr4_2:58092547-58092566 Msa0610390:three_prime_UTR 35.0%
TAAGATGTTGATCATAAGCC+TGG + chr4_2:58092771-58092790 None:intergenic 35.0%
AGACATACGAAGAAATTGTC+AGG - chr4_2:58092845-58092864 Msa0610390:three_prime_UTR 35.0%
GACATACGAAGAAATTGTCA+GGG - chr4_2:58092846-58092865 Msa0610390:three_prime_UTR 35.0%
ATAAATCAACAACTGTTCGC+AGG + chr4_2:58092906-58092925 None:intergenic 35.0%
TGTGTGAGTTAAGAACTATG+AGG - chr4_2:58093014-58093033 Msa0610390:intron 35.0%
!! AGAACTATGAGGCATTGATA+CGG - chr4_2:58093025-58093044 Msa0610390:intron 35.0%
GCACCAACAATTCAGATTTA+AGG + chr4_2:58093142-58093161 None:intergenic 35.0%
TGACACTAACACTTCAATAC+CGG - chr4_2:58093173-58093192 Msa0610390:intron 35.0%
CTGCTTTCAATAATCATCAC+CGG + chr4_2:58093195-58093214 None:intergenic 35.0%
GAAAAATAAACCGCAAAGCA+AGG + chr4_2:58093326-58093345 None:intergenic 35.0%
ATAAAATGAGGGGAATGCTT+AGG + chr4_2:58093438-58093457 None:intergenic 35.0%
GAGAATCCTTCAACTTGATA+GGG + chr4_2:58093523-58093542 None:intergenic 35.0%
TGTCTTTCCCAGATAAGAAA+AGG - chr4_2:58093817-58093836 Msa0610390:intron 35.0%
TCTCATGCTAAAAAGAGAAC+AGG + chr4_2:58094237-58094256 None:intergenic 35.0%
ATCATTGGCGTTTAAGCTTA+TGG + chr4_2:58094329-58094348 None:intergenic 35.0%
AGGAAGTCTACAAACTTTGA+AGG + chr4_2:58094474-58094493 None:intergenic 35.0%
CTAAACCAAACTTAGGATTC+AGG + chr4_2:58094494-58094513 None:intergenic 35.0%
GGAAAAGCTAAACCAAACTT+AGG + chr4_2:58094501-58094520 None:intergenic 35.0%
TCACAATGAAATGAAACCCT+GGG + chr4_2:58092505-58092524 None:intergenic 35.0%
CATTTCATTGTGAGTGAATC+TGG - chr4_2:58092512-58092531 Msa0610390:three_prime_UTR 35.0%
AAGAAGAAGAAGAAGAATGG+CGG - chr4_2:58092547-58092566 Msa0610390:three_prime_UTR 35.0%
TAAGATGTTGATCATAAGCC+TGG + chr4_2:58092771-58092790 None:intergenic 35.0%
AGACATACGAAGAAATTGTC+AGG - chr4_2:58092845-58092864 Msa0610390:three_prime_UTR 35.0%
GACATACGAAGAAATTGTCA+GGG - chr4_2:58092846-58092865 Msa0610390:three_prime_UTR 35.0%
ATAAATCAACAACTGTTCGC+AGG + chr4_2:58092906-58092925 None:intergenic 35.0%
TGTGTGAGTTAAGAACTATG+AGG - chr4_2:58093014-58093033 Msa0610390:intron 35.0%
!! AGAACTATGAGGCATTGATA+CGG - chr4_2:58093025-58093044 Msa0610390:intron 35.0%
GCACCAACAATTCAGATTTA+AGG + chr4_2:58093142-58093161 None:intergenic 35.0%
TGACACTAACACTTCAATAC+CGG - chr4_2:58093173-58093192 Msa0610390:intron 35.0%
CTGCTTTCAATAATCATCAC+CGG + chr4_2:58093195-58093214 None:intergenic 35.0%
GAAAAATAAACCGCAAAGCA+AGG + chr4_2:58093326-58093345 None:intergenic 35.0%
ATAAAATGAGGGGAATGCTT+AGG + chr4_2:58093438-58093457 None:intergenic 35.0%
GAGAATCCTTCAACTTGATA+GGG + chr4_2:58093523-58093542 None:intergenic 35.0%
TGTCTTTCCCAGATAAGAAA+AGG - chr4_2:58093817-58093836 Msa0610390:intron 35.0%
TCTCATGCTAAAAAGAGAAC+AGG + chr4_2:58094237-58094256 None:intergenic 35.0%
ATCATTGGCGTTTAAGCTTA+TGG + chr4_2:58094329-58094348 None:intergenic 35.0%
AGGAAGTCTACAAACTTTGA+AGG + chr4_2:58094474-58094493 None:intergenic 35.0%
CTAAACCAAACTTAGGATTC+AGG + chr4_2:58094494-58094513 None:intergenic 35.0%
GGAAAAGCTAAACCAAACTT+AGG + chr4_2:58094501-58094520 None:intergenic 35.0%
AGAAGAAGAAGAAGAATGGC+GGG - chr4_2:58092548-58092567 Msa0610390:three_prime_UTR 40.0%
! GCAGGTCTACAATTTAGCTT+TGG + chr4_2:58092888-58092907 None:intergenic 40.0%
!! GAACTATGAGGCATTGATAC+GGG - chr4_2:58093026-58093045 Msa0610390:intron 40.0%
TGTCTAGTAGCTGACATATG+TGG + chr4_2:58093218-58093237 None:intergenic 40.0%
!! CTGAAATGTTGGTGCTACAT+AGG - chr4_2:58093248-58093267 Msa0610390:intron 40.0%
GGAGAATCCTTCAACTTGAT+AGG + chr4_2:58093524-58093543 None:intergenic 40.0%
ATTGAAGTGGAGGGAAAGAA+AGG + chr4_2:58093545-58093564 None:intergenic 40.0%
ATCACGATGGGAAAGGATTT+GGG + chr4_2:58093576-58093595 None:intergenic 40.0%
AATCACGATGGGAAAGGATT+TGG + chr4_2:58093577-58093596 None:intergenic 40.0%
CTTTGTTCAGGAATCACGAT+GGG + chr4_2:58093588-58093607 None:intergenic 40.0%
TCTGATTGCAGACTACAAAG+CGG - chr4_2:58093994-58094013 Msa0610390:intron 40.0%
! AGTTCCGTTCCTGTTTGTTA+GGG - chr4_2:58094019-58094038 Msa0610390:intron 40.0%
ACTAGCAAACATGCATGTTG+AGG + chr4_2:58094190-58094209 None:intergenic 40.0%
TCATGGAATGCTCATGAACA+AGG - chr4_2:58094258-58094277 Msa0610390:intron 40.0%
CATGGAATGCTCATGAACAA+GGG - chr4_2:58094259-58094278 Msa0610390:intron 40.0%
GAGCTGTTGTTACATAGAAG+TGG - chr4_2:58094301-58094320 Msa0610390:intron 40.0%
TACATTGGAGATCTTGAACC+TGG - chr4_2:58094405-58094424 Msa0610390:CDS 40.0%
ACATTGGAGATCTTGAACCT+GGG - chr4_2:58094406-58094425 Msa0610390:CDS 40.0%
TTGAACCTGGGATGTTTGAT+GGG - chr4_2:58094418-58094437 Msa0610390:CDS 40.0%
! GTTTGATGGGGTGTTTGATT+AGG - chr4_2:58094431-58094450 Msa0610390:CDS 40.0%
GACTTCCTGAATCCTAAGTT+TGG - chr4_2:58094486-58094505 Msa0610390:five_prime_UTR 40.0%
!!! AGTTTGGTTTAGCTTTTCCC+AGG - chr4_2:58094502-58094521 Msa0610390:five_prime_UTR 40.0%
CTCACAATGAAATGAAACCC+TGG + chr4_2:58092506-58092525 None:intergenic 40.0%
AGAAGAAGAAGAAGAATGGC+GGG - chr4_2:58092548-58092567 Msa0610390:three_prime_UTR 40.0%
! GCAGGTCTACAATTTAGCTT+TGG + chr4_2:58092888-58092907 None:intergenic 40.0%
!! GAACTATGAGGCATTGATAC+GGG - chr4_2:58093026-58093045 Msa0610390:intron 40.0%
TGTCTAGTAGCTGACATATG+TGG + chr4_2:58093218-58093237 None:intergenic 40.0%
!! CTGAAATGTTGGTGCTACAT+AGG - chr4_2:58093248-58093267 Msa0610390:intron 40.0%
GGAGAATCCTTCAACTTGAT+AGG + chr4_2:58093524-58093543 None:intergenic 40.0%
ATTGAAGTGGAGGGAAAGAA+AGG + chr4_2:58093545-58093564 None:intergenic 40.0%
ATCACGATGGGAAAGGATTT+GGG + chr4_2:58093576-58093595 None:intergenic 40.0%
AATCACGATGGGAAAGGATT+TGG + chr4_2:58093577-58093596 None:intergenic 40.0%
CTTTGTTCAGGAATCACGAT+GGG + chr4_2:58093588-58093607 None:intergenic 40.0%
TCTGATTGCAGACTACAAAG+CGG - chr4_2:58093994-58094013 Msa0610390:intron 40.0%
! AGTTCCGTTCCTGTTTGTTA+GGG - chr4_2:58094019-58094038 Msa0610390:intron 40.0%
ACTAGCAAACATGCATGTTG+AGG + chr4_2:58094190-58094209 None:intergenic 40.0%
TCATGGAATGCTCATGAACA+AGG - chr4_2:58094258-58094277 Msa0610390:intron 40.0%
CATGGAATGCTCATGAACAA+GGG - chr4_2:58094259-58094278 Msa0610390:intron 40.0%
GAGCTGTTGTTACATAGAAG+TGG - chr4_2:58094301-58094320 Msa0610390:intron 40.0%
TACATTGGAGATCTTGAACC+TGG - chr4_2:58094405-58094424 Msa0610390:CDS 40.0%
ACATTGGAGATCTTGAACCT+GGG - chr4_2:58094406-58094425 Msa0610390:CDS 40.0%
TTGAACCTGGGATGTTTGAT+GGG - chr4_2:58094418-58094437 Msa0610390:CDS 40.0%
! GTTTGATGGGGTGTTTGATT+AGG - chr4_2:58094431-58094450 Msa0610390:CDS 40.0%
GACTTCCTGAATCCTAAGTT+TGG - chr4_2:58094486-58094505 Msa0610390:five_prime_UTR 40.0%
GAAGAAGAAGAAGAATGGCG+GGG - chr4_2:58092549-58092568 Msa0610390:three_prime_UTR 45.0%
AGGAGCCTTTGGATCTCATA+AGG - chr4_2:58092594-58092613 Msa0610390:three_prime_UTR 45.0%
! CTGAGCCTTATGAGATCCAA+AGG + chr4_2:58092602-58092621 None:intergenic 45.0%
CACGAAGCTCTCTATCAGAA+CGG + chr4_2:58092652-58092671 None:intergenic 45.0%
TGTCTAGCAGCTGACATATG+TGG + chr4_2:58093117-58093136 None:intergenic 45.0%
ACGCCTTCAAGCTGAAATGT+TGG - chr4_2:58093237-58093256 Msa0610390:intron 45.0%
GCACCAACATTTCAGCTTGA+AGG + chr4_2:58093243-58093262 None:intergenic 45.0%
!! TTGGTGCTACATAGGTCAAG+AGG - chr4_2:58093256-58093275 Msa0610390:intron 45.0%
!! TGGTGCTACATAGGTCAAGA+GGG - chr4_2:58093257-58093276 Msa0610390:intron 45.0%
AATAAACCGCAAAGCAAGGC+TGG + chr4_2:58093322-58093341 None:intergenic 45.0%
!! CACTCTCCCTATCAAGTTGA+AGG - chr4_2:58093514-58093533 Msa0610390:intron 45.0%
TGGGAAAGGATTTGGGCAAA+GGG + chr4_2:58093569-58093588 None:intergenic 45.0%
ATGGGAAAGGATTTGGGCAA+AGG + chr4_2:58093570-58093589 None:intergenic 45.0%
TTCAGGAATCACGATGGGAA+AGG + chr4_2:58093583-58093602 None:intergenic 45.0%
! GCTTTGTTCAGGAATCACGA+TGG + chr4_2:58093589-58093608 None:intergenic 45.0%
TGATTCCTGAACAAAGCCGA+AGG - chr4_2:58093592-58093611 Msa0610390:intron 45.0%
!! TTTCTCCTTCGGCTTTGTTC+AGG + chr4_2:58093600-58093619 None:intergenic 45.0%
! CATCAATGAGCACTGCATCT+GGG + chr4_2:58093671-58093690 None:intergenic 45.0%
! TCATCAATGAGCACTGCATC+TGG + chr4_2:58093672-58093691 None:intergenic 45.0%
!! TTTTGATGGTTGGCGCAGAT+TGG + chr4_2:58093899-58093918 None:intergenic 45.0%
ATCTGCGCCAACCATCAAAA+TGG - chr4_2:58093899-58093918 Msa0610390:intron 45.0%
CAGTTCCGTTCCTGTTTGTT+AGG - chr4_2:58094018-58094037 Msa0610390:intron 45.0%
! GTTCCGTTCCTGTTTGTTAG+GGG - chr4_2:58094020-58094039 Msa0610390:intron 45.0%
TCTCCCCTAACAAACAGGAA+CGG + chr4_2:58094026-58094045 None:intergenic 45.0%
! TTCCTGTTTGTTAGGGGAGA+TGG - chr4_2:58094026-58094045 Msa0610390:intron 45.0%
!! TATTGGTTTCTCCACCACTG+AGG - chr4_2:58094054-58094073 Msa0610390:intron 45.0%
GGGTTATACTTATGGCAGCT+TGG - chr4_2:58094279-58094298 Msa0610390:intron 45.0%
CTTGAACCTGGGATGTTTGA+TGG - chr4_2:58094417-58094436 Msa0610390:CDS 45.0%
TGAACCTGGGATGTTTGATG+GGG - chr4_2:58094419-58094438 Msa0610390:CDS 45.0%
GAAGAAGAAGAAGAATGGCG+GGG - chr4_2:58092549-58092568 Msa0610390:three_prime_UTR 45.0%
AGGAGCCTTTGGATCTCATA+AGG - chr4_2:58092594-58092613 Msa0610390:three_prime_UTR 45.0%
! CTGAGCCTTATGAGATCCAA+AGG + chr4_2:58092602-58092621 None:intergenic 45.0%
CACGAAGCTCTCTATCAGAA+CGG + chr4_2:58092652-58092671 None:intergenic 45.0%
TGTCTAGCAGCTGACATATG+TGG + chr4_2:58093117-58093136 None:intergenic 45.0%
ACGCCTTCAAGCTGAAATGT+TGG - chr4_2:58093237-58093256 Msa0610390:intron 45.0%
GCACCAACATTTCAGCTTGA+AGG + chr4_2:58093243-58093262 None:intergenic 45.0%
!! TTGGTGCTACATAGGTCAAG+AGG - chr4_2:58093256-58093275 Msa0610390:intron 45.0%
!! TGGTGCTACATAGGTCAAGA+GGG - chr4_2:58093257-58093276 Msa0610390:intron 45.0%
AATAAACCGCAAAGCAAGGC+TGG + chr4_2:58093322-58093341 None:intergenic 45.0%
!! CACTCTCCCTATCAAGTTGA+AGG - chr4_2:58093514-58093533 Msa0610390:intron 45.0%
TGGGAAAGGATTTGGGCAAA+GGG + chr4_2:58093569-58093588 None:intergenic 45.0%
ATGGGAAAGGATTTGGGCAA+AGG + chr4_2:58093570-58093589 None:intergenic 45.0%
TTCAGGAATCACGATGGGAA+AGG + chr4_2:58093583-58093602 None:intergenic 45.0%
! GCTTTGTTCAGGAATCACGA+TGG + chr4_2:58093589-58093608 None:intergenic 45.0%
TGATTCCTGAACAAAGCCGA+AGG - chr4_2:58093592-58093611 Msa0610390:intron 45.0%
!! TTTCTCCTTCGGCTTTGTTC+AGG + chr4_2:58093600-58093619 None:intergenic 45.0%
! CATCAATGAGCACTGCATCT+GGG + chr4_2:58093671-58093690 None:intergenic 45.0%
! TCATCAATGAGCACTGCATC+TGG + chr4_2:58093672-58093691 None:intergenic 45.0%
!! TTTTGATGGTTGGCGCAGAT+TGG + chr4_2:58093899-58093918 None:intergenic 45.0%
ATCTGCGCCAACCATCAAAA+TGG - chr4_2:58093899-58093918 Msa0610390:intron 45.0%
CAGTTCCGTTCCTGTTTGTT+AGG - chr4_2:58094018-58094037 Msa0610390:intron 45.0%
! GTTCCGTTCCTGTTTGTTAG+GGG - chr4_2:58094020-58094039 Msa0610390:intron 45.0%
TCTCCCCTAACAAACAGGAA+CGG + chr4_2:58094026-58094045 None:intergenic 45.0%
! TTCCTGTTTGTTAGGGGAGA+TGG - chr4_2:58094026-58094045 Msa0610390:intron 45.0%
!! TATTGGTTTCTCCACCACTG+AGG - chr4_2:58094054-58094073 Msa0610390:intron 45.0%
GGGTTATACTTATGGCAGCT+TGG - chr4_2:58094279-58094298 Msa0610390:intron 45.0%
CTTGAACCTGGGATGTTTGA+TGG - chr4_2:58094417-58094436 Msa0610390:CDS 45.0%
TGAACCTGGGATGTTTGATG+GGG - chr4_2:58094419-58094438 Msa0610390:CDS 45.0%
! AGAGGAAGAAAGCGCAGTGA+AGG - chr4_2:58092574-58092593 Msa0610390:three_prime_UTR 50.0%
CGTTCTGATAGAGAGCTTCG+TGG - chr4_2:58092650-58092669 Msa0610390:three_prime_UTR 50.0%
! GGTGCTACATAGGTCAAGAG+GGG - chr4_2:58093258-58093277 Msa0610390:intron 50.0%
CTACATAGGTCAAGAGGGGT+AGG - chr4_2:58093262-58093281 Msa0610390:intron 50.0%
ATAGGTCAAGAGGGGTAGGA+AGG - chr4_2:58093266-58093285 Msa0610390:intron 50.0%
AGGAGAGGTAAGCGAAAGAG+AGG - chr4_2:58093289-58093308 Msa0610390:intron 50.0%
TAGTCTCCAGCCTTGCTTTG+CGG - chr4_2:58093313-58093332 Msa0610390:intron 50.0%
GCAAAGGGGATTGAAGTGGA+GGG + chr4_2:58093554-58093573 None:intergenic 50.0%
TTGGGCAAAGGGGATTGAAG+TGG + chr4_2:58093558-58093577 None:intergenic 50.0%
GGGAAAGGATTTGGGCAAAG+GGG + chr4_2:58093568-58093587 None:intergenic 50.0%
TAGGGGAGATGGCGTGATAT+TGG - chr4_2:58094037-58094056 Msa0610390:intron 50.0%
TGTTATGCAGTCCTCAGTGG+TGG + chr4_2:58094068-58094087 None:intergenic 50.0%
CCATGTTATGCAGTCCTCAG+TGG + chr4_2:58094071-58094090 None:intergenic 50.0%
CCACTGAGGACTGCATAACA+TGG - chr4_2:58094068-58094087 Msa0610390:intron 50.0%
AACACCCCATCAAACATCCC+AGG + chr4_2:58094426-58094445 None:intergenic 50.0%
! AGAGGAAGAAAGCGCAGTGA+AGG - chr4_2:58092574-58092593 Msa0610390:three_prime_UTR 50.0%
CGTTCTGATAGAGAGCTTCG+TGG - chr4_2:58092650-58092669 Msa0610390:three_prime_UTR 50.0%
! GGTGCTACATAGGTCAAGAG+GGG - chr4_2:58093258-58093277 Msa0610390:intron 50.0%
CTACATAGGTCAAGAGGGGT+AGG - chr4_2:58093262-58093281 Msa0610390:intron 50.0%
ATAGGTCAAGAGGGGTAGGA+AGG - chr4_2:58093266-58093285 Msa0610390:intron 50.0%
AGGAGAGGTAAGCGAAAGAG+AGG - chr4_2:58093289-58093308 Msa0610390:intron 50.0%
TAGTCTCCAGCCTTGCTTTG+CGG - chr4_2:58093313-58093332 Msa0610390:intron 50.0%
GCAAAGGGGATTGAAGTGGA+GGG + chr4_2:58093554-58093573 None:intergenic 50.0%
TTGGGCAAAGGGGATTGAAG+TGG + chr4_2:58093558-58093577 None:intergenic 50.0%
GGGAAAGGATTTGGGCAAAG+GGG + chr4_2:58093568-58093587 None:intergenic 50.0%
TAGGGGAGATGGCGTGATAT+TGG - chr4_2:58094037-58094056 Msa0610390:intron 50.0%
TGTTATGCAGTCCTCAGTGG+TGG + chr4_2:58094068-58094087 None:intergenic 50.0%
CCATGTTATGCAGTCCTCAG+TGG + chr4_2:58094071-58094090 None:intergenic 50.0%
CCACTGAGGACTGCATAACA+TGG - chr4_2:58094068-58094087 Msa0610390:intron 50.0%
AACACCCCATCAAACATCCC+AGG + chr4_2:58094426-58094445 None:intergenic 50.0%
! AAGAAGAATGGCGGGGACAG+AGG - chr4_2:58092556-58092575 Msa0610390:three_prime_UTR 55.0%
AAGCGCAGTGAAGGAGCCTT+TGG - chr4_2:58092583-58092602 Msa0610390:three_prime_UTR 55.0%
!! CGGAGGGCTTTCGAGTGTTT+TGG - chr4_2:58093394-58093413 Msa0610390:intron 55.0%
GGCAAAGGGGATTGAAGTGG+AGG + chr4_2:58093555-58093574 None:intergenic 55.0%
CGCCATCTCCCCTAACAAAC+AGG + chr4_2:58094031-58094050 None:intergenic 55.0%
! AAGAAGAATGGCGGGGACAG+AGG - chr4_2:58092556-58092575 Msa0610390:three_prime_UTR 55.0%
AAGCGCAGTGAAGGAGCCTT+TGG - chr4_2:58092583-58092602 Msa0610390:three_prime_UTR 55.0%
!! CGGAGGGCTTTCGAGTGTTT+TGG - chr4_2:58093394-58093413 Msa0610390:intron 55.0%
GGCAAAGGGGATTGAAGTGG+AGG + chr4_2:58093555-58093574 None:intergenic 55.0%
CGCCATCTCCCCTAACAAAC+AGG + chr4_2:58094031-58094050 None:intergenic 55.0%
GGTCAAGAGGGGTAGGAAGG+AGG - chr4_2:58093269-58093288 Msa0610390:intron 60.0%
AGAGGGGTAGGAAGGAGGAG+AGG - chr4_2:58093274-58093293 Msa0610390:intron 60.0%
GGTCAAGAGGGGTAGGAAGG+AGG - chr4_2:58093269-58093288 Msa0610390:intron 60.0%
AGAGGGGTAGGAAGGAGGAG+AGG - chr4_2:58093274-58093293 Msa0610390:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 58092505 58094521 58092505 ID=Msa0610390;Name=Msa0610390
chr4_2 mRNA 58092505 58094521 58092505 ID=Msa0610390-mRNA-1;Parent=Msa0610390;Name=Msa0610390-mRNA-1;_AED=0.04;_eAED=0.04;_QI=58|1|1|1|1|1|3|436|98
chr4_2 exon 58092505 58093021 58092505 ID=Msa0610390-mRNA-1:exon:15254;Parent=Msa0610390-mRNA-1
chr4_2 exon 58094159 58094254 58094159 ID=Msa0610390-mRNA-1:exon:15253;Parent=Msa0610390-mRNA-1
chr4_2 exon 58094344 58094521 58094344 ID=Msa0610390-mRNA-1:exon:15252;Parent=Msa0610390-mRNA-1
chr4_2 five_prime_UTR 58094464 58094521 58094464 ID=Msa0610390-mRNA-1:five_prime_utr;Parent=Msa0610390-mRNA-1
chr4_2 CDS 58094344 58094463 58094344 ID=Msa0610390-mRNA-1:cds;Parent=Msa0610390-mRNA-1
chr4_2 CDS 58094159 58094254 58094159 ID=Msa0610390-mRNA-1:cds;Parent=Msa0610390-mRNA-1
chr4_2 CDS 58092941 58093021 58092941 ID=Msa0610390-mRNA-1:cds;Parent=Msa0610390-mRNA-1
chr4_2 three_prime_UTR 58092505 58092940 58092505 ID=Msa0610390-mRNA-1:three_prime_utr;Parent=Msa0610390-mRNA-1
Gene Sequence

>Msa0610390

ATGGCGGGGACAGAGGAAGAAAGCGCAGTGAAGGAGCCTTTGGATCTCATAAGGCTCAGTCTCGACGAACGTATCTACGTTAAACTCCGTTCTGATAGAGAGCTTCGTGGAAAACTTCATGCTTATGATCAACATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTTACAACGGTTGAAATTGATGATGAGACATACGAAGAAATTGTCAGGACTACAAAGCGGACAGTTCCGTTCCTGTTTGTTAGGGGAGATGGCGTGATATTGGTTTCTCCACCACTGAGGACTGCATAA

Protein sequence

>Msa0610390

MAGTEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRTA*