AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0692940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0692940 MtrunA17_Chr4g0043221 100.000 98 0 0 1 98 1 98 2.34e-66 194
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0692940 AT1G76860.1 89.796 98 9 1 1 98 1 97 9.87e-59 175
Msa0692940 AT1G21190.1 86.458 96 13 0 3 98 2 97 8.05e-58 173

Find 45 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGTTCCGTTCCTGTTTGTT+AGG 0.219777 4_4:-61736344 Msa0692940:CDS
ATCATTGGCGTTTAAGCTTA+TGG 0.251620 4_4:+61736036 None:intergenic
CATTTCATTGCGAGTGAATA+TGG 0.254325 4_4:-61737850 Msa0692940:five_prime_UTR
CAACATCTTAATATGATTCT+TGG 0.270259 4_4:-61737581 Msa0692940:CDS
GTTTGATGGGGTGTTTGATT+AGG 0.334646 4_4:-61735931 Msa0692940:three_prime_UTR
GACTTCCTGAATCCTAAGTT+TGG 0.356983 4_4:-61735876 Msa0692940:three_prime_UTR
CTAAACCAAACTTAGGATTC+AGG 0.374091 4_4:+61735871 None:intergenic
ATGAACAAGGGTTATACTTA+TGG 0.392555 4_4:-61736091 Msa0692940:three_prime_UTR
CTTGAACCTGGGATGTTTGA+TGG 0.393056 4_4:-61735945 Msa0692940:three_prime_UTR
CGCCATCTCCCCTAACAAAC+AGG 0.401332 4_4:+61736334 None:intergenic
TTCCTGTTTGTTAGGGGAGA+TGG 0.402900 4_4:-61736336 Msa0692940:CDS
TAGGGGAGATGGCGTGATAT+TGG 0.403792 4_4:-61736325 Msa0692940:CDS
TGAAACAAATCAAGAATCAT+TGG 0.427500 4_4:+61736021 None:intergenic
AGTTCCGTTCCTGTTTGTTA+GGG 0.430031 4_4:-61736343 Msa0692940:CDS
AAGCGCAGTGAAGGAGCCTT+TGG 0.436284 4_4:-61737779 Msa0692940:CDS
TTGAACCTGGGATGTTTGAT+GGG 0.449994 4_4:-61735944 Msa0692940:three_prime_UTR
CTTCTAAGTTCTAGTTACAT+TGG 0.450409 4_4:-61735972 Msa0692940:three_prime_UTR
AGACATACGAAGAAATTGTC+AGG 0.452612 4_4:-61737517 Msa0692940:CDS
TACATTGGAGATCTTGAACC+TGG 0.454214 4_4:-61735957 Msa0692940:three_prime_UTR
AGGAAGTCTACAAACTTTGA+AGG 0.454963 4_4:+61735891 None:intergenic
GGAAAAGCTAAACCAAACTT+AGG 0.457822 4_4:+61735864 None:intergenic
GAGGATAATCTAATATCATA+AGG 0.485064 4_4:+61736194 None:intergenic
AGAGGAAGAAAGCGCAGTGA+AGG 0.494057 4_4:-61737788 Msa0692940:CDS
AAGAAGAATGGCGGGGACAG+AGG 0.513464 4_4:-61737806 Msa0692940:exon
AGGAGCCTTTGGATCTCATA+AGG 0.523953 4_4:-61737768 Msa0692940:CDS
AAGCTGTTGTTACATAGAAG+TGG 0.528320 4_4:-61736061 Msa0692940:three_prime_UTR
ACATTGGAGATCTTGAACCT+GGG 0.534216 4_4:-61735956 Msa0692940:three_prime_UTR
TCATGGAATGCTCATGAACA+AGG 0.539148 4_4:-61736104 Msa0692940:three_prime_UTR
CGTTCTGATAGAGAGCTTCG+TGG 0.548358 4_4:-61737712 Msa0692940:CDS
CCACTGAGGACTGCATAACA+TGG 0.569381 4_4:-61736294 Msa0692940:exon
CTGAGCCTTATGAGATCCAA+AGG 0.575025 4_4:+61737763 None:intergenic
GTTCCGTTCCTGTTTGTTAG+GGG 0.578832 4_4:-61736342 Msa0692940:CDS
AACACCCCATCAAACATCCC+AGG 0.610009 4_4:+61735939 None:intergenic
ACTAGCAAACATGCATGTTG+AGG 0.616942 4_4:+61736175 None:intergenic
CACGAAGCTCTCTATCAGAA+CGG 0.619250 4_4:+61737713 None:intergenic
CCATGTTATGCAGTCCTCAG+TGG 0.619717 4_4:+61736294 None:intergenic
TGTTATGCAGTCCTCAGTGG+TGG 0.628383 4_4:+61736297 None:intergenic
TGAACCTGGGATGTTTGATG+GGG 0.635063 4_4:-61735943 Msa0692940:three_prime_UTR
TGTTGAAGAAATTGTTACAA+CGG 0.651927 4_4:-61737555 Msa0692940:CDS
CATGGAATGCTCATGAACAA+GGG 0.663566 4_4:-61736103 Msa0692940:three_prime_UTR
GACATACGAAGAAATTGTCA+GGG 0.666267 4_4:-61737516 Msa0692940:intron
TCTCCCCTAACAAACAGGAA+CGG 0.688766 4_4:+61736339 None:intergenic
ATCTAATATCATAAGGAACG+AGG 0.696193 4_4:+61736201 None:intergenic
TCTGATTGCAGACTACAAAG+CGG 0.697746 4_4:-61736368 Msa0692940:intron
TATTGGTTTCTCCACCACTG+AGG 0.734600 4_4:-61736308 Msa0692940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGAAACTTTTGAATAAAATT+TGG - chr4_4:61736973-61736992 Msa0692940:intron 15.0%
!!! AGAAACTTTTGAATAAAATT+TGG - chr4_4:61736973-61736992 Msa0692940:intron 15.0%
!! TAATTTCAATTTCAATTTCC+AGG - chr4_4:61736108-61736127 Msa0692940:three_prime_UTR 20.0%
!! AATTTAAATTCTCCAATTTG+AGG - chr4_4:61736710-61736729 Msa0692940:intron 20.0%
!!! AATTTTTTAGTTCCTCAAAT+TGG + chr4_4:61736725-61736744 None:intergenic 20.0%
!! GAACTAAAAAATTGAAATAG+CGG - chr4_4:61736732-61736751 Msa0692940:intron 20.0%
!!! TTGAGAGTATTATAAAATGA+GGG + chr4_4:61736807-61736826 None:intergenic 20.0%
!!! TTTTGAATAAAATTTGGTTG+TGG - chr4_4:61736979-61736998 Msa0692940:intron 20.0%
!!! ATCACAATTCTGAAAAAATA+AGG + chr4_4:61737128-61737147 None:intergenic 20.0%
!!! TTTTTTATAGACCATTTTGA+TGG + chr4_4:61737271-61737290 None:intergenic 20.0%
!! CAAAATGGTCTATAAAAAAA+AGG - chr4_4:61737272-61737291 Msa0692940:intron 20.0%
!! TAATTTCAATTTCAATTTCC+AGG - chr4_4:61736108-61736127 Msa0692940:three_prime_UTR 20.0%
!! AATTTAAATTCTCCAATTTG+AGG - chr4_4:61736710-61736729 Msa0692940:intron 20.0%
!!! AATTTTTTAGTTCCTCAAAT+TGG + chr4_4:61736725-61736744 None:intergenic 20.0%
!! GAACTAAAAAATTGAAATAG+CGG - chr4_4:61736732-61736751 Msa0692940:intron 20.0%
!!! TTGAGAGTATTATAAAATGA+GGG + chr4_4:61736807-61736826 None:intergenic 20.0%
!!! TTTTGAATAAAATTTGGTTG+TGG - chr4_4:61736979-61736998 Msa0692940:intron 20.0%
!!! ATCACAATTCTGAAAAAATA+AGG + chr4_4:61737128-61737147 None:intergenic 20.0%
!!! TTTTTTATAGACCATTTTGA+TGG + chr4_4:61737271-61737290 None:intergenic 20.0%
!! CAAAATGGTCTATAAAAAAA+AGG - chr4_4:61737272-61737291 Msa0692940:intron 20.0%
! TGAAAGAAAAAAGAGATGAA+AGG + chr4_4:61736060-61736079 None:intergenic 25.0%
! CAACATCTTAATATGATTCT+TGG - chr4_4:61736139-61736158 Msa0692940:three_prime_UTR 25.0%
! TGTTGAAGAAATTGTTACAA+CGG - chr4_4:61736165-61736184 Msa0692940:three_prime_UTR 25.0%
!! AAGGATTATTGTAGTTTGTA+AGG - chr4_4:61736332-61736351 Msa0692940:CDS 25.0%
!! TAAAAAATTGAAATAGCGGA+GGG - chr4_4:61736736-61736755 Msa0692940:intron 25.0%
!!! TGAGAGTATTATAAAATGAG+GGG + chr4_4:61736806-61736825 None:intergenic 25.0%
!!! GTTGAGAGTATTATAAAATG+AGG + chr4_4:61736808-61736827 None:intergenic 25.0%
! TTATTCAAAAGTTTCTCCTT+CGG + chr4_4:61736969-61736988 None:intergenic 25.0%
!!! TATTTTTTCGATTAGATTGC+TGG - chr4_4:61737082-61737101 Msa0692940:intron 25.0%
!!! ATTTTGAAGATACTTTTCCT+TGG - chr4_4:61737312-61737331 Msa0692940:intron 25.0%
! AGAAAAACAAAAATCATCCA+AGG + chr4_4:61737332-61737351 None:intergenic 25.0%
! GAGGATAATCTAATATCATA+AGG + chr4_4:61737529-61737548 None:intergenic 25.0%
! TGAAACAAATCAAGAATCAT+TGG + chr4_4:61737702-61737721 None:intergenic 25.0%
! TGAAAGAAAAAAGAGATGAA+AGG + chr4_4:61736060-61736079 None:intergenic 25.0%
! CAACATCTTAATATGATTCT+TGG - chr4_4:61736139-61736158 Msa0692940:three_prime_UTR 25.0%
! TGTTGAAGAAATTGTTACAA+CGG - chr4_4:61736165-61736184 Msa0692940:three_prime_UTR 25.0%
!! AAGGATTATTGTAGTTTGTA+AGG - chr4_4:61736332-61736351 Msa0692940:CDS 25.0%
!! TAAAAAATTGAAATAGCGGA+GGG - chr4_4:61736736-61736755 Msa0692940:intron 25.0%
!!! TGAGAGTATTATAAAATGAG+GGG + chr4_4:61736806-61736825 None:intergenic 25.0%
!!! GTTGAGAGTATTATAAAATG+AGG + chr4_4:61736808-61736827 None:intergenic 25.0%
! TTATTCAAAAGTTTCTCCTT+CGG + chr4_4:61736969-61736988 None:intergenic 25.0%
!!! TATTTTTTCGATTAGATTGC+TGG - chr4_4:61737082-61737101 Msa0692940:intron 25.0%
!!! ATTTTGAAGATACTTTTCCT+TGG - chr4_4:61737312-61737331 Msa0692940:intron 25.0%
! AGAAAAACAAAAATCATCCA+AGG + chr4_4:61737332-61737351 None:intergenic 25.0%
! GAGGATAATCTAATATCATA+AGG + chr4_4:61737529-61737548 None:intergenic 25.0%
! TGAAACAAATCAAGAATCAT+TGG + chr4_4:61737702-61737721 None:intergenic 25.0%
AAGAAGAAGAAGAAGAAGAA+TGG - chr4_4:61735902-61735921 Msa0692940:three_prime_UTR 30.0%
!! ACAGTTGTTGATTTATTGTC+AGG - chr4_4:61736268-61736287 Msa0692940:three_prime_UTR 30.0%
!! CAGTTGTTGATTTATTGTCA+GGG - chr4_4:61736269-61736288 Msa0692940:three_prime_UTR 30.0%
TACCTTCTTCAGTTTGATAA+AGG - chr4_4:61736313-61736332 Msa0692940:CDS 30.0%
ATCCTTTATCAAACTGAAGA+AGG + chr4_4:61736318-61736337 None:intergenic 30.0%
!! GTAGTTTGTAAGGTGTTTTA+AGG - chr4_4:61736342-61736361 Msa0692940:CDS 30.0%
ACACCTTAAATCTGAATTGT+TGG - chr4_4:61736494-61736513 Msa0692940:intron 30.0%
CTAAAAAATTGAAATAGCGG+AGG - chr4_4:61736735-61736754 Msa0692940:intron 30.0%
! ATGCTTAGGAGAATTTTTCA+AGG + chr4_4:61736782-61736801 None:intergenic 30.0%
AGGTCAATAGTTGAAAGAAA+AGG + chr4_4:61737108-61737127 None:intergenic 30.0%
! ATATCTACTAACTTGTGATC+TGG - chr4_4:61737146-61737165 Msa0692940:intron 30.0%
! TATCTACTAACTTGTGATCT+GGG - chr4_4:61737147-61737166 Msa0692940:intron 30.0%
! AGATGATCCTTTTCTTATCT+GGG + chr4_4:61737185-61737204 None:intergenic 30.0%
! AAGATGATCCTTTTCTTATC+TGG + chr4_4:61737186-61737205 None:intergenic 30.0%
GATAAGAAAAGGATCATCTT+TGG - chr4_4:61737186-61737205 Msa0692940:intron 30.0%
!! TTATAGACCATTTTGATGGT+TGG + chr4_4:61737267-61737286 None:intergenic 30.0%
ATCTAATATCATAAGGAACG+AGG + chr4_4:61737522-61737541 None:intergenic 30.0%
!! TCTTTTTAGCATGAGAATCA+TGG - chr4_4:61737599-61737618 Msa0692940:intron 30.0%
ATGAACAAGGGTTATACTTA+TGG - chr4_4:61737629-61737648 Msa0692940:intron 30.0%
! CTTCTAAGTTCTAGTTACAT+TGG - chr4_4:61737748-61737767 Msa0692940:CDS 30.0%
AAGAAGAAGAAGAAGAAGAA+TGG - chr4_4:61735902-61735921 Msa0692940:three_prime_UTR 30.0%
!! ACAGTTGTTGATTTATTGTC+AGG - chr4_4:61736268-61736287 Msa0692940:three_prime_UTR 30.0%
!! CAGTTGTTGATTTATTGTCA+GGG - chr4_4:61736269-61736288 Msa0692940:three_prime_UTR 30.0%
TACCTTCTTCAGTTTGATAA+AGG - chr4_4:61736313-61736332 Msa0692940:CDS 30.0%
ATCCTTTATCAAACTGAAGA+AGG + chr4_4:61736318-61736337 None:intergenic 30.0%
!! GTAGTTTGTAAGGTGTTTTA+AGG - chr4_4:61736342-61736361 Msa0692940:CDS 30.0%
ACACCTTAAATCTGAATTGT+TGG - chr4_4:61736494-61736513 Msa0692940:intron 30.0%
CTAAAAAATTGAAATAGCGG+AGG - chr4_4:61736735-61736754 Msa0692940:intron 30.0%
! ATGCTTAGGAGAATTTTTCA+AGG + chr4_4:61736782-61736801 None:intergenic 30.0%
AGGTCAATAGTTGAAAGAAA+AGG + chr4_4:61737108-61737127 None:intergenic 30.0%
! ATATCTACTAACTTGTGATC+TGG - chr4_4:61737146-61737165 Msa0692940:intron 30.0%
! TATCTACTAACTTGTGATCT+GGG - chr4_4:61737147-61737166 Msa0692940:intron 30.0%
! AGATGATCCTTTTCTTATCT+GGG + chr4_4:61737185-61737204 None:intergenic 30.0%
! AAGATGATCCTTTTCTTATC+TGG + chr4_4:61737186-61737205 None:intergenic 30.0%
GATAAGAAAAGGATCATCTT+TGG - chr4_4:61737186-61737205 Msa0692940:intron 30.0%
!! TTATAGACCATTTTGATGGT+TGG + chr4_4:61737267-61737286 None:intergenic 30.0%
ATCTAATATCATAAGGAACG+AGG + chr4_4:61737522-61737541 None:intergenic 30.0%
!! TCTTTTTAGCATGAGAATCA+TGG - chr4_4:61737599-61737618 Msa0692940:intron 30.0%
ATGAACAAGGGTTATACTTA+TGG - chr4_4:61737629-61737648 Msa0692940:intron 30.0%
! CTTCTAAGTTCTAGTTACAT+TGG - chr4_4:61737748-61737767 Msa0692940:CDS 30.0%
CATTTCATTGCGAGTGAATA+TGG - chr4_4:61735870-61735889 Msa0692940:three_prime_UTR 35.0%
AAGAAGAAGAAGAAGAATGG+CGG - chr4_4:61735905-61735924 Msa0692940:three_prime_UTR 35.0%
TAAGATGTTGATCATAAGCC+TGG + chr4_4:61736129-61736148 None:intergenic 35.0%
AGACATACGAAGAAATTGTC+AGG - chr4_4:61736203-61736222 Msa0692940:three_prime_UTR 35.0%
GACATACGAAGAAATTGTCA+GGG - chr4_4:61736204-61736223 Msa0692940:three_prime_UTR 35.0%
! GCAGTTCTACAATTTAGCTT+TGG + chr4_4:61736246-61736265 None:intergenic 35.0%
TGTGTGAGTTAAGAACTATG+AGG - chr4_4:61736372-61736391 Msa0692940:intron 35.0%
!! AGAACTATGAGGCATTGATA+CGG - chr4_4:61736383-61736402 Msa0692940:intron 35.0%
GCACCAACAATTCAGATTTA+AGG + chr4_4:61736500-61736519 None:intergenic 35.0%
TGACACTAACACTTCAATAC+CGG - chr4_4:61736531-61736550 Msa0692940:intron 35.0%
CTGCTTTCAATAATCATCAC+CGG + chr4_4:61736553-61736572 None:intergenic 35.0%
GAAAAATAAACCGCAAAGCA+AGG + chr4_4:61736684-61736703 None:intergenic 35.0%
ATAAAATGAGGGGAATGCTT+AGG + chr4_4:61736796-61736815 None:intergenic 35.0%
GAGAATCCTTCAACTTGATA+GGG + chr4_4:61736881-61736900 None:intergenic 35.0%
TGTCTTTCCCAGATAAGAAA+AGG - chr4_4:61737175-61737194 Msa0692940:intron 35.0%
AAGCTGTTGTTACATAGAAG+TGG - chr4_4:61737659-61737678 Msa0692940:intron 35.0%
ATCATTGGCGTTTAAGCTTA+TGG + chr4_4:61737687-61737706 None:intergenic 35.0%
AGGAAGTCTACAAACTTTGA+AGG + chr4_4:61737832-61737851 None:intergenic 35.0%
CTAAACCAAACTTAGGATTC+AGG + chr4_4:61737852-61737871 None:intergenic 35.0%
GGAAAAGCTAAACCAAACTT+AGG + chr4_4:61737859-61737878 None:intergenic 35.0%
CATTTCATTGCGAGTGAATA+TGG - chr4_4:61735870-61735889 Msa0692940:three_prime_UTR 35.0%
AAGAAGAAGAAGAAGAATGG+CGG - chr4_4:61735905-61735924 Msa0692940:three_prime_UTR 35.0%
TAAGATGTTGATCATAAGCC+TGG + chr4_4:61736129-61736148 None:intergenic 35.0%
AGACATACGAAGAAATTGTC+AGG - chr4_4:61736203-61736222 Msa0692940:three_prime_UTR 35.0%
GACATACGAAGAAATTGTCA+GGG - chr4_4:61736204-61736223 Msa0692940:three_prime_UTR 35.0%
! GCAGTTCTACAATTTAGCTT+TGG + chr4_4:61736246-61736265 None:intergenic 35.0%
TGTGTGAGTTAAGAACTATG+AGG - chr4_4:61736372-61736391 Msa0692940:intron 35.0%
!! AGAACTATGAGGCATTGATA+CGG - chr4_4:61736383-61736402 Msa0692940:intron 35.0%
GCACCAACAATTCAGATTTA+AGG + chr4_4:61736500-61736519 None:intergenic 35.0%
TGACACTAACACTTCAATAC+CGG - chr4_4:61736531-61736550 Msa0692940:intron 35.0%
CTGCTTTCAATAATCATCAC+CGG + chr4_4:61736553-61736572 None:intergenic 35.0%
GAAAAATAAACCGCAAAGCA+AGG + chr4_4:61736684-61736703 None:intergenic 35.0%
ATAAAATGAGGGGAATGCTT+AGG + chr4_4:61736796-61736815 None:intergenic 35.0%
GAGAATCCTTCAACTTGATA+GGG + chr4_4:61736881-61736900 None:intergenic 35.0%
TGTCTTTCCCAGATAAGAAA+AGG - chr4_4:61737175-61737194 Msa0692940:intron 35.0%
AAGCTGTTGTTACATAGAAG+TGG - chr4_4:61737659-61737678 Msa0692940:intron 35.0%
ATCATTGGCGTTTAAGCTTA+TGG + chr4_4:61737687-61737706 None:intergenic 35.0%
AGGAAGTCTACAAACTTTGA+AGG + chr4_4:61737832-61737851 None:intergenic 35.0%
CTAAACCAAACTTAGGATTC+AGG + chr4_4:61737852-61737871 None:intergenic 35.0%
GGAAAAGCTAAACCAAACTT+AGG + chr4_4:61737859-61737878 None:intergenic 35.0%
AGAAGAAGAAGAAGAATGGC+GGG - chr4_4:61735906-61735925 Msa0692940:three_prime_UTR 40.0%
!! GAACTATGAGGCATTGATAC+GGG - chr4_4:61736384-61736403 Msa0692940:intron 40.0%
TGTCTAGTAGCTGACATATG+TGG + chr4_4:61736576-61736595 None:intergenic 40.0%
!! CTGAAATGTTGGTGCTACAT+AGG - chr4_4:61736606-61736625 Msa0692940:intron 40.0%
GGAGAATCCTTCAACTTGAT+AGG + chr4_4:61736882-61736901 None:intergenic 40.0%
ATTGAAGTGGAGGGAAAGAA+AGG + chr4_4:61736903-61736922 None:intergenic 40.0%
ATCACGATGGGAAAGGATTT+GGG + chr4_4:61736934-61736953 None:intergenic 40.0%
AATCACGATGGGAAAGGATT+TGG + chr4_4:61736935-61736954 None:intergenic 40.0%
CTTTGTTCAGGAATCACGAT+GGG + chr4_4:61736946-61736965 None:intergenic 40.0%
TCTGATTGCAGACTACAAAG+CGG - chr4_4:61737352-61737371 Msa0692940:intron 40.0%
! AGTTCCGTTCCTGTTTGTTA+GGG - chr4_4:61737377-61737396 Msa0692940:intron 40.0%
ACTAGCAAACATGCATGTTG+AGG + chr4_4:61737548-61737567 None:intergenic 40.0%
TCATGGAATGCTCATGAACA+AGG - chr4_4:61737616-61737635 Msa0692940:intron 40.0%
CATGGAATGCTCATGAACAA+GGG - chr4_4:61737617-61737636 Msa0692940:intron 40.0%
TACATTGGAGATCTTGAACC+TGG - chr4_4:61737763-61737782 Msa0692940:CDS 40.0%
ACATTGGAGATCTTGAACCT+GGG - chr4_4:61737764-61737783 Msa0692940:CDS 40.0%
TTGAACCTGGGATGTTTGAT+GGG - chr4_4:61737776-61737795 Msa0692940:CDS 40.0%
! GTTTGATGGGGTGTTTGATT+AGG - chr4_4:61737789-61737808 Msa0692940:CDS 40.0%
GACTTCCTGAATCCTAAGTT+TGG - chr4_4:61737844-61737863 Msa0692940:five_prime_UTR 40.0%
!!! AGTTTGGTTTAGCTTTTCCC+AGG - chr4_4:61737860-61737879 Msa0692940:five_prime_UTR 40.0%
TCGCAATGAAATGAAACCCT+GGG + chr4_4:61735863-61735882 None:intergenic 40.0%
AGAAGAAGAAGAAGAATGGC+GGG - chr4_4:61735906-61735925 Msa0692940:three_prime_UTR 40.0%
!! GAACTATGAGGCATTGATAC+GGG - chr4_4:61736384-61736403 Msa0692940:intron 40.0%
TGTCTAGTAGCTGACATATG+TGG + chr4_4:61736576-61736595 None:intergenic 40.0%
!! CTGAAATGTTGGTGCTACAT+AGG - chr4_4:61736606-61736625 Msa0692940:intron 40.0%
GGAGAATCCTTCAACTTGAT+AGG + chr4_4:61736882-61736901 None:intergenic 40.0%
ATTGAAGTGGAGGGAAAGAA+AGG + chr4_4:61736903-61736922 None:intergenic 40.0%
ATCACGATGGGAAAGGATTT+GGG + chr4_4:61736934-61736953 None:intergenic 40.0%
AATCACGATGGGAAAGGATT+TGG + chr4_4:61736935-61736954 None:intergenic 40.0%
CTTTGTTCAGGAATCACGAT+GGG + chr4_4:61736946-61736965 None:intergenic 40.0%
TCTGATTGCAGACTACAAAG+CGG - chr4_4:61737352-61737371 Msa0692940:intron 40.0%
! AGTTCCGTTCCTGTTTGTTA+GGG - chr4_4:61737377-61737396 Msa0692940:intron 40.0%
ACTAGCAAACATGCATGTTG+AGG + chr4_4:61737548-61737567 None:intergenic 40.0%
TCATGGAATGCTCATGAACA+AGG - chr4_4:61737616-61737635 Msa0692940:intron 40.0%
CATGGAATGCTCATGAACAA+GGG - chr4_4:61737617-61737636 Msa0692940:intron 40.0%
TACATTGGAGATCTTGAACC+TGG - chr4_4:61737763-61737782 Msa0692940:CDS 40.0%
ACATTGGAGATCTTGAACCT+GGG - chr4_4:61737764-61737783 Msa0692940:CDS 40.0%
TTGAACCTGGGATGTTTGAT+GGG - chr4_4:61737776-61737795 Msa0692940:CDS 40.0%
! GTTTGATGGGGTGTTTGATT+AGG - chr4_4:61737789-61737808 Msa0692940:CDS 40.0%
GACTTCCTGAATCCTAAGTT+TGG - chr4_4:61737844-61737863 Msa0692940:five_prime_UTR 40.0%
GAAGAAGAAGAAGAATGGCG+GGG - chr4_4:61735907-61735926 Msa0692940:three_prime_UTR 45.0%
AGGAGCCTTTGGATCTCATA+AGG - chr4_4:61735952-61735971 Msa0692940:three_prime_UTR 45.0%
! CTGAGCCTTATGAGATCCAA+AGG + chr4_4:61735960-61735979 None:intergenic 45.0%
CACGAAGCTCTCTATCAGAA+CGG + chr4_4:61736010-61736029 None:intergenic 45.0%
TGTCTAGCAGCTGACATATG+TGG + chr4_4:61736475-61736494 None:intergenic 45.0%
ACGCCTTCAAGCTGAAATGT+TGG - chr4_4:61736595-61736614 Msa0692940:intron 45.0%
GCACCAACATTTCAGCTTGA+AGG + chr4_4:61736601-61736620 None:intergenic 45.0%
!! TTGGTGCTACATAGGTCAAG+AGG - chr4_4:61736614-61736633 Msa0692940:intron 45.0%
!! TGGTGCTACATAGGTCAAGA+GGG - chr4_4:61736615-61736634 Msa0692940:intron 45.0%
AATAAACCGCAAAGCAAGGC+TGG + chr4_4:61736680-61736699 None:intergenic 45.0%
!! CACTCTCCCTATCAAGTTGA+AGG - chr4_4:61736872-61736891 Msa0692940:intron 45.0%
TGGGAAAGGATTTGGGCAAA+GGG + chr4_4:61736927-61736946 None:intergenic 45.0%
ATGGGAAAGGATTTGGGCAA+AGG + chr4_4:61736928-61736947 None:intergenic 45.0%
TTCAGGAATCACGATGGGAA+AGG + chr4_4:61736941-61736960 None:intergenic 45.0%
! GCTTTGTTCAGGAATCACGA+TGG + chr4_4:61736947-61736966 None:intergenic 45.0%
TGATTCCTGAACAAAGCCGA+AGG - chr4_4:61736950-61736969 Msa0692940:intron 45.0%
!! TTTCTCCTTCGGCTTTGTTC+AGG + chr4_4:61736958-61736977 None:intergenic 45.0%
! CATCAATGAGCACTGCATCT+GGG + chr4_4:61737029-61737048 None:intergenic 45.0%
! TCATCAATGAGCACTGCATC+TGG + chr4_4:61737030-61737049 None:intergenic 45.0%
!! TTTTGATGGTTGGCGCAGAT+TGG + chr4_4:61737257-61737276 None:intergenic 45.0%
ATCTGCGCCAACCATCAAAA+TGG - chr4_4:61737257-61737276 Msa0692940:intron 45.0%
CAGTTCCGTTCCTGTTTGTT+AGG - chr4_4:61737376-61737395 Msa0692940:intron 45.0%
! GTTCCGTTCCTGTTTGTTAG+GGG - chr4_4:61737378-61737397 Msa0692940:intron 45.0%
TCTCCCCTAACAAACAGGAA+CGG + chr4_4:61737384-61737403 None:intergenic 45.0%
! TTCCTGTTTGTTAGGGGAGA+TGG - chr4_4:61737384-61737403 Msa0692940:intron 45.0%
!! TATTGGTTTCTCCACCACTG+AGG - chr4_4:61737412-61737431 Msa0692940:intron 45.0%
CTTGAACCTGGGATGTTTGA+TGG - chr4_4:61737775-61737794 Msa0692940:CDS 45.0%
TGAACCTGGGATGTTTGATG+GGG - chr4_4:61737777-61737796 Msa0692940:CDS 45.0%
CTCGCAATGAAATGAAACCC+TGG + chr4_4:61735864-61735883 None:intergenic 45.0%
GAAGAAGAAGAAGAATGGCG+GGG - chr4_4:61735907-61735926 Msa0692940:three_prime_UTR 45.0%
AGGAGCCTTTGGATCTCATA+AGG - chr4_4:61735952-61735971 Msa0692940:three_prime_UTR 45.0%
! CTGAGCCTTATGAGATCCAA+AGG + chr4_4:61735960-61735979 None:intergenic 45.0%
CACGAAGCTCTCTATCAGAA+CGG + chr4_4:61736010-61736029 None:intergenic 45.0%
TGTCTAGCAGCTGACATATG+TGG + chr4_4:61736475-61736494 None:intergenic 45.0%
ACGCCTTCAAGCTGAAATGT+TGG - chr4_4:61736595-61736614 Msa0692940:intron 45.0%
GCACCAACATTTCAGCTTGA+AGG + chr4_4:61736601-61736620 None:intergenic 45.0%
!! TTGGTGCTACATAGGTCAAG+AGG - chr4_4:61736614-61736633 Msa0692940:intron 45.0%
!! TGGTGCTACATAGGTCAAGA+GGG - chr4_4:61736615-61736634 Msa0692940:intron 45.0%
AATAAACCGCAAAGCAAGGC+TGG + chr4_4:61736680-61736699 None:intergenic 45.0%
!! CACTCTCCCTATCAAGTTGA+AGG - chr4_4:61736872-61736891 Msa0692940:intron 45.0%
TGGGAAAGGATTTGGGCAAA+GGG + chr4_4:61736927-61736946 None:intergenic 45.0%
ATGGGAAAGGATTTGGGCAA+AGG + chr4_4:61736928-61736947 None:intergenic 45.0%
TTCAGGAATCACGATGGGAA+AGG + chr4_4:61736941-61736960 None:intergenic 45.0%
! GCTTTGTTCAGGAATCACGA+TGG + chr4_4:61736947-61736966 None:intergenic 45.0%
TGATTCCTGAACAAAGCCGA+AGG - chr4_4:61736950-61736969 Msa0692940:intron 45.0%
!! TTTCTCCTTCGGCTTTGTTC+AGG + chr4_4:61736958-61736977 None:intergenic 45.0%
! CATCAATGAGCACTGCATCT+GGG + chr4_4:61737029-61737048 None:intergenic 45.0%
! TCATCAATGAGCACTGCATC+TGG + chr4_4:61737030-61737049 None:intergenic 45.0%
!! TTTTGATGGTTGGCGCAGAT+TGG + chr4_4:61737257-61737276 None:intergenic 45.0%
ATCTGCGCCAACCATCAAAA+TGG - chr4_4:61737257-61737276 Msa0692940:intron 45.0%
CAGTTCCGTTCCTGTTTGTT+AGG - chr4_4:61737376-61737395 Msa0692940:intron 45.0%
! GTTCCGTTCCTGTTTGTTAG+GGG - chr4_4:61737378-61737397 Msa0692940:intron 45.0%
TCTCCCCTAACAAACAGGAA+CGG + chr4_4:61737384-61737403 None:intergenic 45.0%
! TTCCTGTTTGTTAGGGGAGA+TGG - chr4_4:61737384-61737403 Msa0692940:intron 45.0%
!! TATTGGTTTCTCCACCACTG+AGG - chr4_4:61737412-61737431 Msa0692940:intron 45.0%
CTTGAACCTGGGATGTTTGA+TGG - chr4_4:61737775-61737794 Msa0692940:CDS 45.0%
TGAACCTGGGATGTTTGATG+GGG - chr4_4:61737777-61737796 Msa0692940:CDS 45.0%
! AGAGGAAGAAAGCGCAGTGA+AGG - chr4_4:61735932-61735951 Msa0692940:three_prime_UTR 50.0%
CGTTCTGATAGAGAGCTTCG+TGG - chr4_4:61736008-61736027 Msa0692940:three_prime_UTR 50.0%
! GGTGCTACATAGGTCAAGAG+GGG - chr4_4:61736616-61736635 Msa0692940:intron 50.0%
CTACATAGGTCAAGAGGGGT+AGG - chr4_4:61736620-61736639 Msa0692940:intron 50.0%
ATAGGTCAAGAGGGGTAGGA+AGG - chr4_4:61736624-61736643 Msa0692940:intron 50.0%
AGGAGAGGTAAGCGAAAGAG+AGG - chr4_4:61736647-61736666 Msa0692940:intron 50.0%
TAGTCTCCAGCCTTGCTTTG+CGG - chr4_4:61736671-61736690 Msa0692940:intron 50.0%
GCAAAGGGGATTGAAGTGGA+GGG + chr4_4:61736912-61736931 None:intergenic 50.0%
TTGGGCAAAGGGGATTGAAG+TGG + chr4_4:61736916-61736935 None:intergenic 50.0%
GGGAAAGGATTTGGGCAAAG+GGG + chr4_4:61736926-61736945 None:intergenic 50.0%
TAGGGGAGATGGCGTGATAT+TGG - chr4_4:61737395-61737414 Msa0692940:intron 50.0%
TGTTATGCAGTCCTCAGTGG+TGG + chr4_4:61737426-61737445 None:intergenic 50.0%
CCATGTTATGCAGTCCTCAG+TGG + chr4_4:61737429-61737448 None:intergenic 50.0%
CCACTGAGGACTGCATAACA+TGG - chr4_4:61737426-61737445 Msa0692940:intron 50.0%
AACACCCCATCAAACATCCC+AGG + chr4_4:61737784-61737803 None:intergenic 50.0%
! AGAGGAAGAAAGCGCAGTGA+AGG - chr4_4:61735932-61735951 Msa0692940:three_prime_UTR 50.0%
CGTTCTGATAGAGAGCTTCG+TGG - chr4_4:61736008-61736027 Msa0692940:three_prime_UTR 50.0%
! GGTGCTACATAGGTCAAGAG+GGG - chr4_4:61736616-61736635 Msa0692940:intron 50.0%
CTACATAGGTCAAGAGGGGT+AGG - chr4_4:61736620-61736639 Msa0692940:intron 50.0%
ATAGGTCAAGAGGGGTAGGA+AGG - chr4_4:61736624-61736643 Msa0692940:intron 50.0%
AGGAGAGGTAAGCGAAAGAG+AGG - chr4_4:61736647-61736666 Msa0692940:intron 50.0%
TAGTCTCCAGCCTTGCTTTG+CGG - chr4_4:61736671-61736690 Msa0692940:intron 50.0%
GCAAAGGGGATTGAAGTGGA+GGG + chr4_4:61736912-61736931 None:intergenic 50.0%
TTGGGCAAAGGGGATTGAAG+TGG + chr4_4:61736916-61736935 None:intergenic 50.0%
GGGAAAGGATTTGGGCAAAG+GGG + chr4_4:61736926-61736945 None:intergenic 50.0%
TAGGGGAGATGGCGTGATAT+TGG - chr4_4:61737395-61737414 Msa0692940:intron 50.0%
TGTTATGCAGTCCTCAGTGG+TGG + chr4_4:61737426-61737445 None:intergenic 50.0%
CCATGTTATGCAGTCCTCAG+TGG + chr4_4:61737429-61737448 None:intergenic 50.0%
CCACTGAGGACTGCATAACA+TGG - chr4_4:61737426-61737445 Msa0692940:intron 50.0%
AACACCCCATCAAACATCCC+AGG + chr4_4:61737784-61737803 None:intergenic 50.0%
! AAGAAGAATGGCGGGGACAG+AGG - chr4_4:61735914-61735933 Msa0692940:three_prime_UTR 55.0%
AAGCGCAGTGAAGGAGCCTT+TGG - chr4_4:61735941-61735960 Msa0692940:three_prime_UTR 55.0%
!! CGGAGGGCTTTCGAGTGTTT+TGG - chr4_4:61736752-61736771 Msa0692940:intron 55.0%
GGCAAAGGGGATTGAAGTGG+AGG + chr4_4:61736913-61736932 None:intergenic 55.0%
CGCCATCTCCCCTAACAAAC+AGG + chr4_4:61737389-61737408 None:intergenic 55.0%
! AAGAAGAATGGCGGGGACAG+AGG - chr4_4:61735914-61735933 Msa0692940:three_prime_UTR 55.0%
AAGCGCAGTGAAGGAGCCTT+TGG - chr4_4:61735941-61735960 Msa0692940:three_prime_UTR 55.0%
!! CGGAGGGCTTTCGAGTGTTT+TGG - chr4_4:61736752-61736771 Msa0692940:intron 55.0%
GGCAAAGGGGATTGAAGTGG+AGG + chr4_4:61736913-61736932 None:intergenic 55.0%
CGCCATCTCCCCTAACAAAC+AGG + chr4_4:61737389-61737408 None:intergenic 55.0%
GGTCAAGAGGGGTAGGAAGG+AGG - chr4_4:61736627-61736646 Msa0692940:intron 60.0%
AGAGGGGTAGGAAGGAGGAG+AGG - chr4_4:61736632-61736651 Msa0692940:intron 60.0%
GGTCAAGAGGGGTAGGAAGG+AGG - chr4_4:61736627-61736646 Msa0692940:intron 60.0%
AGAGGGGTAGGAAGGAGGAG+AGG - chr4_4:61736632-61736651 Msa0692940:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 61735863 61737879 61735863 ID=Msa0692940;Name=Msa0692940
chr4_4 mRNA 61735863 61737879 61735863 ID=Msa0692940-mRNA-1;Parent=Msa0692940;Name=Msa0692940-mRNA-1;_AED=0.04;_eAED=0.04;_QI=58|1|1|1|1|1|3|436|98
chr4_4 exon 61735863 61736379 61735863 ID=Msa0692940-mRNA-1:exon:17147;Parent=Msa0692940-mRNA-1
chr4_4 exon 61737517 61737612 61737517 ID=Msa0692940-mRNA-1:exon:17146;Parent=Msa0692940-mRNA-1
chr4_4 exon 61737702 61737879 61737702 ID=Msa0692940-mRNA-1:exon:17145;Parent=Msa0692940-mRNA-1
chr4_4 five_prime_UTR 61737822 61737879 61737822 ID=Msa0692940-mRNA-1:five_prime_utr;Parent=Msa0692940-mRNA-1
chr4_4 CDS 61737702 61737821 61737702 ID=Msa0692940-mRNA-1:cds;Parent=Msa0692940-mRNA-1
chr4_4 CDS 61737517 61737612 61737517 ID=Msa0692940-mRNA-1:cds;Parent=Msa0692940-mRNA-1
chr4_4 CDS 61736299 61736379 61736299 ID=Msa0692940-mRNA-1:cds;Parent=Msa0692940-mRNA-1
chr4_4 three_prime_UTR 61735863 61736298 61735863 ID=Msa0692940-mRNA-1:three_prime_utr;Parent=Msa0692940-mRNA-1
Gene Sequence

>Msa0692940

ATGGCGGGGACAGAGGAAGAAAGCGCAGTGAAGGAGCCTTTGGATCTCATAAGGCTCAGTCTCGACGAACGTATCTACGTTAAACTCCGTTCTGATAGAGAGCTTCGTGGAAAACTTCATGCTTATGATCAACATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTTACAACGGTTGAAATTGATGATGAGACATACGAAGAAATTGTCAGGACTACAAAGCGGACAGTTCCGTTCCTGTTTGTTAGGGGAGATGGCGTGATATTGGTTTCTCCACCACTGAGGACTGCATAA

Protein sequence

>Msa0692940

MAGTEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRTA*