AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0650920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0650920 MtrunA17_Chr4g0043221 100.000 98 0 0 1 98 1 98 2.34e-66 194
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0650920 AT1G76860.1 89.796 98 9 1 1 98 1 97 9.87e-59 175
Msa0650920 AT1G21190.1 86.458 96 13 0 3 98 2 97 8.05e-58 173

Find 46 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGTTCCGTTCCTGTTTGTT+AGG 0.219777 4_3:-58199577 Msa0650920:CDS
CATTTCATTGTGAGTGAATC+TGG 0.250832 4_3:-58201083 Msa0650920:five_prime_UTR
ATCATTGGCGTTTAAGCTTA+TGG 0.251620 4_3:+58199269 None:intergenic
CAACATCTTAATATGATTCT+TGG 0.270259 4_3:-58200814 Msa0650920:CDS
GTTTGATGGGGTGTTTGATT+AGG 0.334646 4_3:-58199165 Msa0650920:three_prime_UTR
GACTTCCTGAATCCTAAGTT+TGG 0.356983 4_3:-58199110 Msa0650920:three_prime_UTR
CTAAACCAAACTTAGGATTC+AGG 0.374091 4_3:+58199105 None:intergenic
ATGAACAAGGGTTATACTTA+TGG 0.392555 4_3:-58199324 Msa0650920:three_prime_UTR
CTTGAACCTGGGATGTTTGA+TGG 0.393056 4_3:-58199179 Msa0650920:three_prime_UTR
CGCCATCTCCCCTAACAAAC+AGG 0.401332 4_3:+58199567 None:intergenic
TTCCTGTTTGTTAGGGGAGA+TGG 0.402900 4_3:-58199569 Msa0650920:CDS
TAGGGGAGATGGCGTGATAT+TGG 0.403792 4_3:-58199558 Msa0650920:CDS
TGAAACAAATCAAGAATCAT+TGG 0.427500 4_3:+58199254 None:intergenic
AGTTCCGTTCCTGTTTGTTA+GGG 0.430031 4_3:-58199576 Msa0650920:CDS
AAGCGCAGTGAAGGAGCCTT+TGG 0.436284 4_3:-58201012 Msa0650920:CDS
TTGAACCTGGGATGTTTGAT+GGG 0.449994 4_3:-58199178 Msa0650920:three_prime_UTR
CTTCTAAGTTCTAGTTACAT+TGG 0.450409 4_3:-58199206 Msa0650920:three_prime_UTR
AGACATACGAAGAAATTGTC+AGG 0.452612 4_3:-58200750 Msa0650920:CDS
TACATTGGAGATCTTGAACC+TGG 0.454214 4_3:-58199191 Msa0650920:three_prime_UTR
AGGAAGTCTACAAACTTTGA+AGG 0.454963 4_3:+58199125 None:intergenic
GGAAAAGCTAAACCAAACTT+AGG 0.457822 4_3:+58199098 None:intergenic
GAGGATAATCTAATATCATA+AGG 0.485064 4_3:+58199427 None:intergenic
AGAGGAAGAAAGCGCAGTGA+AGG 0.494057 4_3:-58201021 Msa0650920:CDS
AAGAAGAATGGCGGGGACAG+AGG 0.513464 4_3:-58201039 Msa0650920:exon
AGGAGCCTTTGGATCTCATA+AGG 0.523953 4_3:-58201001 Msa0650920:CDS
ACATTGGAGATCTTGAACCT+GGG 0.534216 4_3:-58199190 Msa0650920:three_prime_UTR
TCATGGAATGCTCATGAACA+AGG 0.539148 4_3:-58199337 Msa0650920:three_prime_UTR
CGTTCTGATAGAGAGCTTCG+TGG 0.548358 4_3:-58200945 Msa0650920:CDS
GAGCTGTTGTTACATAGAAG+TGG 0.562353 4_3:-58199294 Msa0650920:three_prime_UTR
CCACTGAGGACTGCATAACA+TGG 0.569381 4_3:-58199527 Msa0650920:exon
GGGTTATACTTATGGCAGCT+TGG 0.573830 4_3:-58199316 Msa0650920:three_prime_UTR
CTGAGCCTTATGAGATCCAA+AGG 0.575025 4_3:+58200996 None:intergenic
GTTCCGTTCCTGTTTGTTAG+GGG 0.578832 4_3:-58199575 Msa0650920:CDS
AACACCCCATCAAACATCCC+AGG 0.610009 4_3:+58199173 None:intergenic
ACTAGCAAACATGCATGTTG+AGG 0.616942 4_3:+58199408 None:intergenic
CACGAAGCTCTCTATCAGAA+CGG 0.619250 4_3:+58200946 None:intergenic
CCATGTTATGCAGTCCTCAG+TGG 0.619717 4_3:+58199527 None:intergenic
TGTTATGCAGTCCTCAGTGG+TGG 0.628383 4_3:+58199530 None:intergenic
TGAACCTGGGATGTTTGATG+GGG 0.635063 4_3:-58199177 Msa0650920:three_prime_UTR
TGTTGAAGAAATTGTTACAA+CGG 0.651927 4_3:-58200788 Msa0650920:CDS
CATGGAATGCTCATGAACAA+GGG 0.663566 4_3:-58199336 Msa0650920:three_prime_UTR
GACATACGAAGAAATTGTCA+GGG 0.666267 4_3:-58200749 Msa0650920:intron
TCTCCCCTAACAAACAGGAA+CGG 0.688766 4_3:+58199572 None:intergenic
ATCTAATATCATAAGGAACG+AGG 0.696193 4_3:+58199434 None:intergenic
TCTGATTGCAGACTACAAAG+CGG 0.697746 4_3:-58199601 Msa0650920:intron
TATTGGTTTCTCCACCACTG+AGG 0.734600 4_3:-58199541 Msa0650920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGAAACTTTTGAATAAAATT+TGG - chr4_3:58200207-58200226 Msa0650920:intron 15.0%
!!! AGAAACTTTTGAATAAAATT+TGG - chr4_3:58200207-58200226 Msa0650920:intron 15.0%
!! TAATTTCAATTTCAATTTCC+AGG - chr4_3:58199342-58199361 Msa0650920:three_prime_UTR 20.0%
!! AATTTAAATTCTCCAATTTG+AGG - chr4_3:58199944-58199963 Msa0650920:intron 20.0%
!!! AATTTTTTAGTTCCTCAAAT+TGG + chr4_3:58199959-58199978 None:intergenic 20.0%
!! GAACTAAAAAATTGAAATAG+CGG - chr4_3:58199966-58199985 Msa0650920:intron 20.0%
!!! TTGAGAGTATTATAAAATGA+GGG + chr4_3:58200041-58200060 None:intergenic 20.0%
!!! TTTTGAATAAAATTTGGTTG+TGG - chr4_3:58200213-58200232 Msa0650920:intron 20.0%
!!! ATCACAATTCTGAAAAAATA+AGG + chr4_3:58200362-58200381 None:intergenic 20.0%
!!! TTTTTTATAGACCATTTTGA+TGG + chr4_3:58200505-58200524 None:intergenic 20.0%
!! CAAAATGGTCTATAAAAAAA+AGG - chr4_3:58200506-58200525 Msa0650920:intron 20.0%
!! TAATTTCAATTTCAATTTCC+AGG - chr4_3:58199342-58199361 Msa0650920:three_prime_UTR 20.0%
!! AATTTAAATTCTCCAATTTG+AGG - chr4_3:58199944-58199963 Msa0650920:intron 20.0%
!!! AATTTTTTAGTTCCTCAAAT+TGG + chr4_3:58199959-58199978 None:intergenic 20.0%
!! GAACTAAAAAATTGAAATAG+CGG - chr4_3:58199966-58199985 Msa0650920:intron 20.0%
!!! TTGAGAGTATTATAAAATGA+GGG + chr4_3:58200041-58200060 None:intergenic 20.0%
!!! TTTTGAATAAAATTTGGTTG+TGG - chr4_3:58200213-58200232 Msa0650920:intron 20.0%
!!! ATCACAATTCTGAAAAAATA+AGG + chr4_3:58200362-58200381 None:intergenic 20.0%
!!! TTTTTTATAGACCATTTTGA+TGG + chr4_3:58200505-58200524 None:intergenic 20.0%
!! CAAAATGGTCTATAAAAAAA+AGG - chr4_3:58200506-58200525 Msa0650920:intron 20.0%
! TGAAAGAAAAAAGAGATGAA+AGG + chr4_3:58199294-58199313 None:intergenic 25.0%
! CAACATCTTAATATGATTCT+TGG - chr4_3:58199373-58199392 Msa0650920:three_prime_UTR 25.0%
! TGTTGAAGAAATTGTTACAA+CGG - chr4_3:58199399-58199418 Msa0650920:three_prime_UTR 25.0%
!! AAGGATTATTGTAGTTTGTA+AGG - chr4_3:58199566-58199585 Msa0650920:CDS 25.0%
!! TAAAAAATTGAAATAGCGGA+GGG - chr4_3:58199970-58199989 Msa0650920:intron 25.0%
!!! TGAGAGTATTATAAAATGAG+GGG + chr4_3:58200040-58200059 None:intergenic 25.0%
!!! GTTGAGAGTATTATAAAATG+AGG + chr4_3:58200042-58200061 None:intergenic 25.0%
! TTATTCAAAAGTTTCTCCTT+CGG + chr4_3:58200203-58200222 None:intergenic 25.0%
!!! TATTTTTTCGATTAGATTGC+TGG - chr4_3:58200316-58200335 Msa0650920:intron 25.0%
!!! ATTTTGAAGATACTTTTCCT+TGG - chr4_3:58200546-58200565 Msa0650920:intron 25.0%
! AGAAAAACAAAAATCATCCA+AGG + chr4_3:58200566-58200585 None:intergenic 25.0%
! GAGGATAATCTAATATCATA+AGG + chr4_3:58200763-58200782 None:intergenic 25.0%
! TGAAACAAATCAAGAATCAT+TGG + chr4_3:58200936-58200955 None:intergenic 25.0%
! TGAAAGAAAAAAGAGATGAA+AGG + chr4_3:58199294-58199313 None:intergenic 25.0%
! CAACATCTTAATATGATTCT+TGG - chr4_3:58199373-58199392 Msa0650920:three_prime_UTR 25.0%
! TGTTGAAGAAATTGTTACAA+CGG - chr4_3:58199399-58199418 Msa0650920:three_prime_UTR 25.0%
!! AAGGATTATTGTAGTTTGTA+AGG - chr4_3:58199566-58199585 Msa0650920:CDS 25.0%
!! TAAAAAATTGAAATAGCGGA+GGG - chr4_3:58199970-58199989 Msa0650920:intron 25.0%
!!! TGAGAGTATTATAAAATGAG+GGG + chr4_3:58200040-58200059 None:intergenic 25.0%
!!! GTTGAGAGTATTATAAAATG+AGG + chr4_3:58200042-58200061 None:intergenic 25.0%
! TTATTCAAAAGTTTCTCCTT+CGG + chr4_3:58200203-58200222 None:intergenic 25.0%
!!! TATTTTTTCGATTAGATTGC+TGG - chr4_3:58200316-58200335 Msa0650920:intron 25.0%
!!! ATTTTGAAGATACTTTTCCT+TGG - chr4_3:58200546-58200565 Msa0650920:intron 25.0%
! AGAAAAACAAAAATCATCCA+AGG + chr4_3:58200566-58200585 None:intergenic 25.0%
! GAGGATAATCTAATATCATA+AGG + chr4_3:58200763-58200782 None:intergenic 25.0%
! TGAAACAAATCAAGAATCAT+TGG + chr4_3:58200936-58200955 None:intergenic 25.0%
AAGAAGAAGAAGAAGAAGAA+TGG - chr4_3:58199136-58199155 Msa0650920:three_prime_UTR 30.0%
!! ACAGTTGTTGATTTATTGTC+AGG - chr4_3:58199502-58199521 Msa0650920:three_prime_UTR 30.0%
!! CAGTTGTTGATTTATTGTCA+GGG - chr4_3:58199503-58199522 Msa0650920:three_prime_UTR 30.0%
TACCTTCTTCAGTTTGATAA+AGG - chr4_3:58199547-58199566 Msa0650920:CDS 30.0%
ATCCTTTATCAAACTGAAGA+AGG + chr4_3:58199552-58199571 None:intergenic 30.0%
!! GTAGTTTGTAAGGTGTTTTA+AGG - chr4_3:58199576-58199595 Msa0650920:CDS 30.0%
ACACCTTAAATCTGAATTGT+TGG - chr4_3:58199728-58199747 Msa0650920:intron 30.0%
CTAAAAAATTGAAATAGCGG+AGG - chr4_3:58199969-58199988 Msa0650920:intron 30.0%
! ATGCTTAGGAGAATTTTTCA+AGG + chr4_3:58200016-58200035 None:intergenic 30.0%
AGGTCAATAGTTGAAAGAAA+AGG + chr4_3:58200342-58200361 None:intergenic 30.0%
! ATATCTACTAACTTGTGATC+TGG - chr4_3:58200380-58200399 Msa0650920:intron 30.0%
! TATCTACTAACTTGTGATCT+GGG - chr4_3:58200381-58200400 Msa0650920:intron 30.0%
! AGATGATCCTTTTCTTATCT+GGG + chr4_3:58200419-58200438 None:intergenic 30.0%
! AAGATGATCCTTTTCTTATC+TGG + chr4_3:58200420-58200439 None:intergenic 30.0%
GATAAGAAAAGGATCATCTT+TGG - chr4_3:58200420-58200439 Msa0650920:intron 30.0%
!! TTATAGACCATTTTGATGGT+TGG + chr4_3:58200501-58200520 None:intergenic 30.0%
ATCTAATATCATAAGGAACG+AGG + chr4_3:58200756-58200775 None:intergenic 30.0%
!! TCTTTTTAGCATGAGAATCA+TGG - chr4_3:58200833-58200852 Msa0650920:intron 30.0%
ATGAACAAGGGTTATACTTA+TGG - chr4_3:58200863-58200882 Msa0650920:intron 30.0%
! CTTCTAAGTTCTAGTTACAT+TGG - chr4_3:58200981-58201000 Msa0650920:CDS 30.0%
AAGAAGAAGAAGAAGAAGAA+TGG - chr4_3:58199136-58199155 Msa0650920:three_prime_UTR 30.0%
!! ACAGTTGTTGATTTATTGTC+AGG - chr4_3:58199502-58199521 Msa0650920:three_prime_UTR 30.0%
!! CAGTTGTTGATTTATTGTCA+GGG - chr4_3:58199503-58199522 Msa0650920:three_prime_UTR 30.0%
TACCTTCTTCAGTTTGATAA+AGG - chr4_3:58199547-58199566 Msa0650920:CDS 30.0%
ATCCTTTATCAAACTGAAGA+AGG + chr4_3:58199552-58199571 None:intergenic 30.0%
!! GTAGTTTGTAAGGTGTTTTA+AGG - chr4_3:58199576-58199595 Msa0650920:CDS 30.0%
ACACCTTAAATCTGAATTGT+TGG - chr4_3:58199728-58199747 Msa0650920:intron 30.0%
CTAAAAAATTGAAATAGCGG+AGG - chr4_3:58199969-58199988 Msa0650920:intron 30.0%
! ATGCTTAGGAGAATTTTTCA+AGG + chr4_3:58200016-58200035 None:intergenic 30.0%
AGGTCAATAGTTGAAAGAAA+AGG + chr4_3:58200342-58200361 None:intergenic 30.0%
! ATATCTACTAACTTGTGATC+TGG - chr4_3:58200380-58200399 Msa0650920:intron 30.0%
! TATCTACTAACTTGTGATCT+GGG - chr4_3:58200381-58200400 Msa0650920:intron 30.0%
! AGATGATCCTTTTCTTATCT+GGG + chr4_3:58200419-58200438 None:intergenic 30.0%
! AAGATGATCCTTTTCTTATC+TGG + chr4_3:58200420-58200439 None:intergenic 30.0%
GATAAGAAAAGGATCATCTT+TGG - chr4_3:58200420-58200439 Msa0650920:intron 30.0%
!! TTATAGACCATTTTGATGGT+TGG + chr4_3:58200501-58200520 None:intergenic 30.0%
ATCTAATATCATAAGGAACG+AGG + chr4_3:58200756-58200775 None:intergenic 30.0%
!! TCTTTTTAGCATGAGAATCA+TGG - chr4_3:58200833-58200852 Msa0650920:intron 30.0%
ATGAACAAGGGTTATACTTA+TGG - chr4_3:58200863-58200882 Msa0650920:intron 30.0%
! CTTCTAAGTTCTAGTTACAT+TGG - chr4_3:58200981-58201000 Msa0650920:CDS 30.0%
CATTTCATTGTGAGTGAATC+TGG - chr4_3:58199104-58199123 Msa0650920:three_prime_UTR 35.0%
AAGAAGAAGAAGAAGAATGG+CGG - chr4_3:58199139-58199158 Msa0650920:three_prime_UTR 35.0%
TAAGATGTTGATCATAAGCC+TGG + chr4_3:58199363-58199382 None:intergenic 35.0%
AGACATACGAAGAAATTGTC+AGG - chr4_3:58199437-58199456 Msa0650920:three_prime_UTR 35.0%
GACATACGAAGAAATTGTCA+GGG - chr4_3:58199438-58199457 Msa0650920:three_prime_UTR 35.0%
ATAAATCAACAACTGTTCGC+AGG + chr4_3:58199498-58199517 None:intergenic 35.0%
TGTGTGAGTTAAGAACTATG+AGG - chr4_3:58199606-58199625 Msa0650920:intron 35.0%
!! AGAACTATGAGGCATTGATA+CGG - chr4_3:58199617-58199636 Msa0650920:intron 35.0%
GCACCAACAATTCAGATTTA+AGG + chr4_3:58199734-58199753 None:intergenic 35.0%
TGACACTAACACTTCAATAC+CGG - chr4_3:58199765-58199784 Msa0650920:intron 35.0%
CTGCTTTCAATAATCATCAC+CGG + chr4_3:58199787-58199806 None:intergenic 35.0%
GAAAAATAAACCGCAAAGCA+AGG + chr4_3:58199918-58199937 None:intergenic 35.0%
ATAAAATGAGGGGAATGCTT+AGG + chr4_3:58200030-58200049 None:intergenic 35.0%
GAGAATCCTTCAACTTGATA+GGG + chr4_3:58200115-58200134 None:intergenic 35.0%
TGTCTTTCCCAGATAAGAAA+AGG - chr4_3:58200409-58200428 Msa0650920:intron 35.0%
TCTCATGCTAAAAAGAGAAC+AGG + chr4_3:58200829-58200848 None:intergenic 35.0%
ATCATTGGCGTTTAAGCTTA+TGG + chr4_3:58200921-58200940 None:intergenic 35.0%
AGGAAGTCTACAAACTTTGA+AGG + chr4_3:58201065-58201084 None:intergenic 35.0%
CTAAACCAAACTTAGGATTC+AGG + chr4_3:58201085-58201104 None:intergenic 35.0%
GGAAAAGCTAAACCAAACTT+AGG + chr4_3:58201092-58201111 None:intergenic 35.0%
TCACAATGAAATGAAACCCT+GGG + chr4_3:58199097-58199116 None:intergenic 35.0%
CATTTCATTGTGAGTGAATC+TGG - chr4_3:58199104-58199123 Msa0650920:three_prime_UTR 35.0%
AAGAAGAAGAAGAAGAATGG+CGG - chr4_3:58199139-58199158 Msa0650920:three_prime_UTR 35.0%
TAAGATGTTGATCATAAGCC+TGG + chr4_3:58199363-58199382 None:intergenic 35.0%
AGACATACGAAGAAATTGTC+AGG - chr4_3:58199437-58199456 Msa0650920:three_prime_UTR 35.0%
GACATACGAAGAAATTGTCA+GGG - chr4_3:58199438-58199457 Msa0650920:three_prime_UTR 35.0%
ATAAATCAACAACTGTTCGC+AGG + chr4_3:58199498-58199517 None:intergenic 35.0%
TGTGTGAGTTAAGAACTATG+AGG - chr4_3:58199606-58199625 Msa0650920:intron 35.0%
!! AGAACTATGAGGCATTGATA+CGG - chr4_3:58199617-58199636 Msa0650920:intron 35.0%
GCACCAACAATTCAGATTTA+AGG + chr4_3:58199734-58199753 None:intergenic 35.0%
TGACACTAACACTTCAATAC+CGG - chr4_3:58199765-58199784 Msa0650920:intron 35.0%
CTGCTTTCAATAATCATCAC+CGG + chr4_3:58199787-58199806 None:intergenic 35.0%
GAAAAATAAACCGCAAAGCA+AGG + chr4_3:58199918-58199937 None:intergenic 35.0%
ATAAAATGAGGGGAATGCTT+AGG + chr4_3:58200030-58200049 None:intergenic 35.0%
GAGAATCCTTCAACTTGATA+GGG + chr4_3:58200115-58200134 None:intergenic 35.0%
TGTCTTTCCCAGATAAGAAA+AGG - chr4_3:58200409-58200428 Msa0650920:intron 35.0%
TCTCATGCTAAAAAGAGAAC+AGG + chr4_3:58200829-58200848 None:intergenic 35.0%
ATCATTGGCGTTTAAGCTTA+TGG + chr4_3:58200921-58200940 None:intergenic 35.0%
AGGAAGTCTACAAACTTTGA+AGG + chr4_3:58201065-58201084 None:intergenic 35.0%
CTAAACCAAACTTAGGATTC+AGG + chr4_3:58201085-58201104 None:intergenic 35.0%
GGAAAAGCTAAACCAAACTT+AGG + chr4_3:58201092-58201111 None:intergenic 35.0%
AGAAGAAGAAGAAGAATGGC+GGG - chr4_3:58199140-58199159 Msa0650920:three_prime_UTR 40.0%
! GCAGGTCTACAATTTAGCTT+TGG + chr4_3:58199480-58199499 None:intergenic 40.0%
!! GAACTATGAGGCATTGATAC+GGG - chr4_3:58199618-58199637 Msa0650920:intron 40.0%
TGTCTAGTAGCTGACATATG+TGG + chr4_3:58199810-58199829 None:intergenic 40.0%
!! CTGAAATGTTGGTGCTACAT+AGG - chr4_3:58199840-58199859 Msa0650920:intron 40.0%
GGAGAATCCTTCAACTTGAT+AGG + chr4_3:58200116-58200135 None:intergenic 40.0%
ATTGAAGTGGAGGGAAAGAA+AGG + chr4_3:58200137-58200156 None:intergenic 40.0%
ATCACGATGGGAAAGGATTT+GGG + chr4_3:58200168-58200187 None:intergenic 40.0%
AATCACGATGGGAAAGGATT+TGG + chr4_3:58200169-58200188 None:intergenic 40.0%
CTTTGTTCAGGAATCACGAT+GGG + chr4_3:58200180-58200199 None:intergenic 40.0%
TCTGATTGCAGACTACAAAG+CGG - chr4_3:58200586-58200605 Msa0650920:intron 40.0%
! AGTTCCGTTCCTGTTTGTTA+GGG - chr4_3:58200611-58200630 Msa0650920:intron 40.0%
ACTAGCAAACATGCATGTTG+AGG + chr4_3:58200782-58200801 None:intergenic 40.0%
TCATGGAATGCTCATGAACA+AGG - chr4_3:58200850-58200869 Msa0650920:intron 40.0%
CATGGAATGCTCATGAACAA+GGG - chr4_3:58200851-58200870 Msa0650920:intron 40.0%
GAGCTGTTGTTACATAGAAG+TGG - chr4_3:58200893-58200912 Msa0650920:intron 40.0%
TACATTGGAGATCTTGAACC+TGG - chr4_3:58200996-58201015 Msa0650920:CDS 40.0%
ACATTGGAGATCTTGAACCT+GGG - chr4_3:58200997-58201016 Msa0650920:CDS 40.0%
TTGAACCTGGGATGTTTGAT+GGG - chr4_3:58201009-58201028 Msa0650920:CDS 40.0%
! GTTTGATGGGGTGTTTGATT+AGG - chr4_3:58201022-58201041 Msa0650920:CDS 40.0%
GACTTCCTGAATCCTAAGTT+TGG - chr4_3:58201077-58201096 Msa0650920:five_prime_UTR 40.0%
!!! AGTTTGGTTTAGCTTTTCCC+AGG - chr4_3:58201093-58201112 Msa0650920:five_prime_UTR 40.0%
CTCACAATGAAATGAAACCC+TGG + chr4_3:58199098-58199117 None:intergenic 40.0%
AGAAGAAGAAGAAGAATGGC+GGG - chr4_3:58199140-58199159 Msa0650920:three_prime_UTR 40.0%
! GCAGGTCTACAATTTAGCTT+TGG + chr4_3:58199480-58199499 None:intergenic 40.0%
!! GAACTATGAGGCATTGATAC+GGG - chr4_3:58199618-58199637 Msa0650920:intron 40.0%
TGTCTAGTAGCTGACATATG+TGG + chr4_3:58199810-58199829 None:intergenic 40.0%
!! CTGAAATGTTGGTGCTACAT+AGG - chr4_3:58199840-58199859 Msa0650920:intron 40.0%
GGAGAATCCTTCAACTTGAT+AGG + chr4_3:58200116-58200135 None:intergenic 40.0%
ATTGAAGTGGAGGGAAAGAA+AGG + chr4_3:58200137-58200156 None:intergenic 40.0%
ATCACGATGGGAAAGGATTT+GGG + chr4_3:58200168-58200187 None:intergenic 40.0%
AATCACGATGGGAAAGGATT+TGG + chr4_3:58200169-58200188 None:intergenic 40.0%
CTTTGTTCAGGAATCACGAT+GGG + chr4_3:58200180-58200199 None:intergenic 40.0%
TCTGATTGCAGACTACAAAG+CGG - chr4_3:58200586-58200605 Msa0650920:intron 40.0%
! AGTTCCGTTCCTGTTTGTTA+GGG - chr4_3:58200611-58200630 Msa0650920:intron 40.0%
ACTAGCAAACATGCATGTTG+AGG + chr4_3:58200782-58200801 None:intergenic 40.0%
TCATGGAATGCTCATGAACA+AGG - chr4_3:58200850-58200869 Msa0650920:intron 40.0%
CATGGAATGCTCATGAACAA+GGG - chr4_3:58200851-58200870 Msa0650920:intron 40.0%
GAGCTGTTGTTACATAGAAG+TGG - chr4_3:58200893-58200912 Msa0650920:intron 40.0%
TACATTGGAGATCTTGAACC+TGG - chr4_3:58200996-58201015 Msa0650920:CDS 40.0%
ACATTGGAGATCTTGAACCT+GGG - chr4_3:58200997-58201016 Msa0650920:CDS 40.0%
TTGAACCTGGGATGTTTGAT+GGG - chr4_3:58201009-58201028 Msa0650920:CDS 40.0%
! GTTTGATGGGGTGTTTGATT+AGG - chr4_3:58201022-58201041 Msa0650920:CDS 40.0%
GACTTCCTGAATCCTAAGTT+TGG - chr4_3:58201077-58201096 Msa0650920:five_prime_UTR 40.0%
GAAGAAGAAGAAGAATGGCG+GGG - chr4_3:58199141-58199160 Msa0650920:three_prime_UTR 45.0%
AGGAGCCTTTGGATCTCATA+AGG - chr4_3:58199186-58199205 Msa0650920:three_prime_UTR 45.0%
! CTGAGCCTTATGAGATCCAA+AGG + chr4_3:58199194-58199213 None:intergenic 45.0%
CACGAAGCTCTCTATCAGAA+CGG + chr4_3:58199244-58199263 None:intergenic 45.0%
TGTCTAGCAGCTGACATATG+TGG + chr4_3:58199709-58199728 None:intergenic 45.0%
ACGCCTTCAAGCTGAAATGT+TGG - chr4_3:58199829-58199848 Msa0650920:intron 45.0%
GCACCAACATTTCAGCTTGA+AGG + chr4_3:58199835-58199854 None:intergenic 45.0%
!! TTGGTGCTACATAGGTCAAG+AGG - chr4_3:58199848-58199867 Msa0650920:intron 45.0%
!! TGGTGCTACATAGGTCAAGA+GGG - chr4_3:58199849-58199868 Msa0650920:intron 45.0%
AATAAACCGCAAAGCAAGGC+TGG + chr4_3:58199914-58199933 None:intergenic 45.0%
!! CACTCTCCCTATCAAGTTGA+AGG - chr4_3:58200106-58200125 Msa0650920:intron 45.0%
TGGGAAAGGATTTGGGCAAA+GGG + chr4_3:58200161-58200180 None:intergenic 45.0%
ATGGGAAAGGATTTGGGCAA+AGG + chr4_3:58200162-58200181 None:intergenic 45.0%
TTCAGGAATCACGATGGGAA+AGG + chr4_3:58200175-58200194 None:intergenic 45.0%
! GCTTTGTTCAGGAATCACGA+TGG + chr4_3:58200181-58200200 None:intergenic 45.0%
TGATTCCTGAACAAAGCCGA+AGG - chr4_3:58200184-58200203 Msa0650920:intron 45.0%
!! TTTCTCCTTCGGCTTTGTTC+AGG + chr4_3:58200192-58200211 None:intergenic 45.0%
! CATCAATGAGCACTGCATCT+GGG + chr4_3:58200263-58200282 None:intergenic 45.0%
! TCATCAATGAGCACTGCATC+TGG + chr4_3:58200264-58200283 None:intergenic 45.0%
!! TTTTGATGGTTGGCGCAGAT+TGG + chr4_3:58200491-58200510 None:intergenic 45.0%
ATCTGCGCCAACCATCAAAA+TGG - chr4_3:58200491-58200510 Msa0650920:intron 45.0%
CAGTTCCGTTCCTGTTTGTT+AGG - chr4_3:58200610-58200629 Msa0650920:intron 45.0%
! GTTCCGTTCCTGTTTGTTAG+GGG - chr4_3:58200612-58200631 Msa0650920:intron 45.0%
TCTCCCCTAACAAACAGGAA+CGG + chr4_3:58200618-58200637 None:intergenic 45.0%
! TTCCTGTTTGTTAGGGGAGA+TGG - chr4_3:58200618-58200637 Msa0650920:intron 45.0%
!! TATTGGTTTCTCCACCACTG+AGG - chr4_3:58200646-58200665 Msa0650920:intron 45.0%
GGGTTATACTTATGGCAGCT+TGG - chr4_3:58200871-58200890 Msa0650920:intron 45.0%
CTTGAACCTGGGATGTTTGA+TGG - chr4_3:58201008-58201027 Msa0650920:CDS 45.0%
TGAACCTGGGATGTTTGATG+GGG - chr4_3:58201010-58201029 Msa0650920:CDS 45.0%
GAAGAAGAAGAAGAATGGCG+GGG - chr4_3:58199141-58199160 Msa0650920:three_prime_UTR 45.0%
AGGAGCCTTTGGATCTCATA+AGG - chr4_3:58199186-58199205 Msa0650920:three_prime_UTR 45.0%
! CTGAGCCTTATGAGATCCAA+AGG + chr4_3:58199194-58199213 None:intergenic 45.0%
CACGAAGCTCTCTATCAGAA+CGG + chr4_3:58199244-58199263 None:intergenic 45.0%
TGTCTAGCAGCTGACATATG+TGG + chr4_3:58199709-58199728 None:intergenic 45.0%
ACGCCTTCAAGCTGAAATGT+TGG - chr4_3:58199829-58199848 Msa0650920:intron 45.0%
GCACCAACATTTCAGCTTGA+AGG + chr4_3:58199835-58199854 None:intergenic 45.0%
!! TTGGTGCTACATAGGTCAAG+AGG - chr4_3:58199848-58199867 Msa0650920:intron 45.0%
!! TGGTGCTACATAGGTCAAGA+GGG - chr4_3:58199849-58199868 Msa0650920:intron 45.0%
AATAAACCGCAAAGCAAGGC+TGG + chr4_3:58199914-58199933 None:intergenic 45.0%
!! CACTCTCCCTATCAAGTTGA+AGG - chr4_3:58200106-58200125 Msa0650920:intron 45.0%
TGGGAAAGGATTTGGGCAAA+GGG + chr4_3:58200161-58200180 None:intergenic 45.0%
ATGGGAAAGGATTTGGGCAA+AGG + chr4_3:58200162-58200181 None:intergenic 45.0%
TTCAGGAATCACGATGGGAA+AGG + chr4_3:58200175-58200194 None:intergenic 45.0%
! GCTTTGTTCAGGAATCACGA+TGG + chr4_3:58200181-58200200 None:intergenic 45.0%
TGATTCCTGAACAAAGCCGA+AGG - chr4_3:58200184-58200203 Msa0650920:intron 45.0%
!! TTTCTCCTTCGGCTTTGTTC+AGG + chr4_3:58200192-58200211 None:intergenic 45.0%
! CATCAATGAGCACTGCATCT+GGG + chr4_3:58200263-58200282 None:intergenic 45.0%
! TCATCAATGAGCACTGCATC+TGG + chr4_3:58200264-58200283 None:intergenic 45.0%
!! TTTTGATGGTTGGCGCAGAT+TGG + chr4_3:58200491-58200510 None:intergenic 45.0%
ATCTGCGCCAACCATCAAAA+TGG - chr4_3:58200491-58200510 Msa0650920:intron 45.0%
CAGTTCCGTTCCTGTTTGTT+AGG - chr4_3:58200610-58200629 Msa0650920:intron 45.0%
! GTTCCGTTCCTGTTTGTTAG+GGG - chr4_3:58200612-58200631 Msa0650920:intron 45.0%
TCTCCCCTAACAAACAGGAA+CGG + chr4_3:58200618-58200637 None:intergenic 45.0%
! TTCCTGTTTGTTAGGGGAGA+TGG - chr4_3:58200618-58200637 Msa0650920:intron 45.0%
!! TATTGGTTTCTCCACCACTG+AGG - chr4_3:58200646-58200665 Msa0650920:intron 45.0%
GGGTTATACTTATGGCAGCT+TGG - chr4_3:58200871-58200890 Msa0650920:intron 45.0%
CTTGAACCTGGGATGTTTGA+TGG - chr4_3:58201008-58201027 Msa0650920:CDS 45.0%
TGAACCTGGGATGTTTGATG+GGG - chr4_3:58201010-58201029 Msa0650920:CDS 45.0%
! AGAGGAAGAAAGCGCAGTGA+AGG - chr4_3:58199166-58199185 Msa0650920:three_prime_UTR 50.0%
CGTTCTGATAGAGAGCTTCG+TGG - chr4_3:58199242-58199261 Msa0650920:three_prime_UTR 50.0%
! GGTGCTACATAGGTCAAGAG+GGG - chr4_3:58199850-58199869 Msa0650920:intron 50.0%
CTACATAGGTCAAGAGGGGT+AGG - chr4_3:58199854-58199873 Msa0650920:intron 50.0%
ATAGGTCAAGAGGGGTAGGA+AGG - chr4_3:58199858-58199877 Msa0650920:intron 50.0%
AGGAGAGGTAAGCGAAAGAG+AGG - chr4_3:58199881-58199900 Msa0650920:intron 50.0%
TAGTCTCCAGCCTTGCTTTG+CGG - chr4_3:58199905-58199924 Msa0650920:intron 50.0%
GCAAAGGGGATTGAAGTGGA+GGG + chr4_3:58200146-58200165 None:intergenic 50.0%
TTGGGCAAAGGGGATTGAAG+TGG + chr4_3:58200150-58200169 None:intergenic 50.0%
GGGAAAGGATTTGGGCAAAG+GGG + chr4_3:58200160-58200179 None:intergenic 50.0%
TAGGGGAGATGGCGTGATAT+TGG - chr4_3:58200629-58200648 Msa0650920:intron 50.0%
TGTTATGCAGTCCTCAGTGG+TGG + chr4_3:58200660-58200679 None:intergenic 50.0%
CCATGTTATGCAGTCCTCAG+TGG + chr4_3:58200663-58200682 None:intergenic 50.0%
CCACTGAGGACTGCATAACA+TGG - chr4_3:58200660-58200679 Msa0650920:intron 50.0%
AACACCCCATCAAACATCCC+AGG + chr4_3:58201017-58201036 None:intergenic 50.0%
! AGAGGAAGAAAGCGCAGTGA+AGG - chr4_3:58199166-58199185 Msa0650920:three_prime_UTR 50.0%
CGTTCTGATAGAGAGCTTCG+TGG - chr4_3:58199242-58199261 Msa0650920:three_prime_UTR 50.0%
! GGTGCTACATAGGTCAAGAG+GGG - chr4_3:58199850-58199869 Msa0650920:intron 50.0%
CTACATAGGTCAAGAGGGGT+AGG - chr4_3:58199854-58199873 Msa0650920:intron 50.0%
ATAGGTCAAGAGGGGTAGGA+AGG - chr4_3:58199858-58199877 Msa0650920:intron 50.0%
AGGAGAGGTAAGCGAAAGAG+AGG - chr4_3:58199881-58199900 Msa0650920:intron 50.0%
TAGTCTCCAGCCTTGCTTTG+CGG - chr4_3:58199905-58199924 Msa0650920:intron 50.0%
GCAAAGGGGATTGAAGTGGA+GGG + chr4_3:58200146-58200165 None:intergenic 50.0%
TTGGGCAAAGGGGATTGAAG+TGG + chr4_3:58200150-58200169 None:intergenic 50.0%
GGGAAAGGATTTGGGCAAAG+GGG + chr4_3:58200160-58200179 None:intergenic 50.0%
TAGGGGAGATGGCGTGATAT+TGG - chr4_3:58200629-58200648 Msa0650920:intron 50.0%
TGTTATGCAGTCCTCAGTGG+TGG + chr4_3:58200660-58200679 None:intergenic 50.0%
CCATGTTATGCAGTCCTCAG+TGG + chr4_3:58200663-58200682 None:intergenic 50.0%
CCACTGAGGACTGCATAACA+TGG - chr4_3:58200660-58200679 Msa0650920:intron 50.0%
AACACCCCATCAAACATCCC+AGG + chr4_3:58201017-58201036 None:intergenic 50.0%
! AAGAAGAATGGCGGGGACAG+AGG - chr4_3:58199148-58199167 Msa0650920:three_prime_UTR 55.0%
AAGCGCAGTGAAGGAGCCTT+TGG - chr4_3:58199175-58199194 Msa0650920:three_prime_UTR 55.0%
!! CGGAGGGCTTTCGAGTGTTT+TGG - chr4_3:58199986-58200005 Msa0650920:intron 55.0%
GGCAAAGGGGATTGAAGTGG+AGG + chr4_3:58200147-58200166 None:intergenic 55.0%
CGCCATCTCCCCTAACAAAC+AGG + chr4_3:58200623-58200642 None:intergenic 55.0%
! AAGAAGAATGGCGGGGACAG+AGG - chr4_3:58199148-58199167 Msa0650920:three_prime_UTR 55.0%
AAGCGCAGTGAAGGAGCCTT+TGG - chr4_3:58199175-58199194 Msa0650920:three_prime_UTR 55.0%
!! CGGAGGGCTTTCGAGTGTTT+TGG - chr4_3:58199986-58200005 Msa0650920:intron 55.0%
GGCAAAGGGGATTGAAGTGG+AGG + chr4_3:58200147-58200166 None:intergenic 55.0%
CGCCATCTCCCCTAACAAAC+AGG + chr4_3:58200623-58200642 None:intergenic 55.0%
GGTCAAGAGGGGTAGGAAGG+AGG - chr4_3:58199861-58199880 Msa0650920:intron 60.0%
AGAGGGGTAGGAAGGAGGAG+AGG - chr4_3:58199866-58199885 Msa0650920:intron 60.0%
GGTCAAGAGGGGTAGGAAGG+AGG - chr4_3:58199861-58199880 Msa0650920:intron 60.0%
AGAGGGGTAGGAAGGAGGAG+AGG - chr4_3:58199866-58199885 Msa0650920:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 58199097 58201112 58199097 ID=Msa0650920;Name=Msa0650920
chr4_3 mRNA 58199097 58201112 58199097 ID=Msa0650920-mRNA-1;Parent=Msa0650920;Name=Msa0650920-mRNA-1;_AED=0.04;_eAED=0.04;_QI=58|1|1|1|1|1|3|435|98
chr4_3 exon 58199097 58199612 58199097 ID=Msa0650920-mRNA-1:exon:15378;Parent=Msa0650920-mRNA-1
chr4_3 exon 58200750 58200845 58200750 ID=Msa0650920-mRNA-1:exon:15377;Parent=Msa0650920-mRNA-1
chr4_3 exon 58200935 58201112 58200935 ID=Msa0650920-mRNA-1:exon:15376;Parent=Msa0650920-mRNA-1
chr4_3 five_prime_UTR 58201055 58201112 58201055 ID=Msa0650920-mRNA-1:five_prime_utr;Parent=Msa0650920-mRNA-1
chr4_3 CDS 58200935 58201054 58200935 ID=Msa0650920-mRNA-1:cds;Parent=Msa0650920-mRNA-1
chr4_3 CDS 58200750 58200845 58200750 ID=Msa0650920-mRNA-1:cds;Parent=Msa0650920-mRNA-1
chr4_3 CDS 58199532 58199612 58199532 ID=Msa0650920-mRNA-1:cds;Parent=Msa0650920-mRNA-1
chr4_3 three_prime_UTR 58199097 58199531 58199097 ID=Msa0650920-mRNA-1:three_prime_utr;Parent=Msa0650920-mRNA-1
Gene Sequence

>Msa0650920

ATGGCGGGGACAGAGGAAGAAAGCGCAGTGAAGGAGCCTTTGGATCTCATAAGGCTCAGTCTCGACGAACGTATCTACGTTAAACTCCGTTCTGATAGAGAGCTTCGTGGAAAACTTCATGCTTATGATCAACATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTTACAACGGTTGAAATTGATGATGAGACATACGAAGAAATTGTCAGGACTACAAAGCGGACAGTTCCGTTCCTGTTTGTTAGGGGAGATGGCGTGATATTGGTTTCTCCACCACTGAGGACTGCATAA

Protein sequence

>Msa0650920

MAGTEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRTA*