AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0634550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0634550 MtrunA17_Chr4g0013821 94.461 343 17 1 26 366 1 343 0.0 646
Msa0634550 MtrunA17_Chr4g0013721 85.948 306 43 0 46 351 93 398 0.0 567
Msa0634550 MtrunA17_Chr8g0372601 48.505 301 151 3 53 349 30 330 1.20e-97 293
Msa0634550 MtrunA17_Chr3g0129051 46.688 317 156 5 35 346 11 319 4.21e-97 291
Msa0634550 MtrunA17_Chr3g0114451 45.652 322 160 5 36 349 4 318 1.97e-95 287
Msa0634550 MtrunA17_Chr3g0106921 45.963 322 161 5 34 349 6 320 3.78e-94 284
Msa0634550 MtrunA17_Chr5g0404721 46.844 301 156 3 53 349 30 330 3.22e-93 281
Msa0634550 MtrunA17_Chr2g0292181 42.647 340 183 4 24 351 2 341 5.61e-93 282
Msa0634550 MtrunA17_Chr2g0299691 43.611 360 182 7 7 350 5 359 1.51e-92 281
Msa0634550 MtrunA17_Chr5g0432441 45.509 334 162 6 26 349 3 326 3.75e-92 279
Msa0634550 MtrunA17_Chr1g0204011 45.110 317 171 3 34 349 8 322 1.62e-90 275
Msa0634550 MtrunA17_Chr2g0292111 44.805 308 165 3 49 351 25 332 2.47e-90 275
Msa0634550 MtrunA17_Chr5g0438021 45.625 320 162 4 35 349 13 325 2.91e-90 274
Msa0634550 MtrunA17_Chr7g0258811 42.857 322 176 5 35 350 53 372 3.79e-89 273
Msa0634550 MtrunA17_Chr2g0292151 44.481 308 166 3 49 351 25 332 4.86e-89 272
Msa0634550 MtrunA17_Chr2g0291751 44.194 310 168 3 47 351 23 332 8.91e-89 271
Msa0634550 MtrunA17_Chr4g0068621 44.590 305 163 4 49 349 34 336 2.45e-88 269
Msa0634550 MtrunA17_Chr3g0106901 45.141 319 165 3 34 349 12 323 5.19e-88 268
Msa0634550 MtrunA17_Chr5g0432351 44.444 324 163 6 36 349 5 321 5.60e-88 268
Msa0634550 MtrunA17_Chr1g0155611 46.885 305 157 3 50 349 43 347 1.85e-87 268
Msa0634550 MtrunA17_Chr5g0432341 45.625 320 160 5 37 349 9 321 1.97e-87 266
Msa0634550 MtrunA17_Chr5g0432331 42.817 355 184 7 6 349 6 352 6.08e-87 266
Msa0634550 MtrunA17_Chr4g0013171 44.548 321 166 5 34 349 8 321 2.46e-86 264
Msa0634550 MtrunA17_Chr3g0129061 44.479 326 168 5 29 349 5 322 2.68e-86 264
Msa0634550 MtrunA17_Chr2g0292211 42.547 322 176 4 39 351 22 343 3.72e-86 265
Msa0634550 MtrunA17_Chr4g0038161 43.125 320 168 5 36 349 9 320 4.73e-86 263
Msa0634550 MtrunA17_Chr4g0070951 41.925 322 178 4 36 350 11 330 9.04e-86 263
Msa0634550 MtrunA17_Chr3g0129041 44.860 321 163 5 36 349 9 322 1.42e-85 262
Msa0634550 MtrunA17_Chr4g0038151 41.796 323 172 5 37 349 5 321 2.30e-85 261
Msa0634550 MtrunA17_Chr7g0224371 42.767 318 173 2 35 350 13 323 3.77e-85 261
Msa0634550 MtrunA17_Chr2g0320051 43.653 323 171 4 31 349 3 318 6.17e-85 260
Msa0634550 MtrunA17_Chr4g0043391 42.236 322 173 5 35 349 9 324 1.11e-84 259
Msa0634550 MtrunA17_Chr2g0320071 43.614 321 167 4 36 349 4 317 1.29e-84 259
Msa0634550 MtrunA17_Chr1g0175561 40.252 318 184 4 39 350 10 327 7.60e-84 258
Msa0634550 MtrunA17_Chr2g0292241 42.532 308 172 3 49 351 25 332 7.65e-84 258
Msa0634550 MtrunA17_Chr2g0320101 44.201 319 166 5 35 349 7 317 4.31e-83 255
Msa0634550 MtrunA17_Chr5g0402571 42.683 328 178 6 27 349 4 326 5.34e-83 255
Msa0634550 MtrunA17_Chr2g0292251 42.623 305 170 3 51 350 26 330 8.25e-83 256
Msa0634550 MtrunA17_Chr4g0038171 42.006 319 169 6 41 349 9 321 8.48e-83 254
Msa0634550 MtrunA17_Chr2g0320061 42.415 323 175 4 31 349 3 318 1.74e-82 254
Msa0634550 MtrunA17_Chr4g0013181 45.973 298 149 5 57 349 63 353 2.01e-82 255
Msa0634550 MtrunA17_Chr2g0320091 42.547 322 170 5 36 349 4 318 3.79e-82 253
Msa0634550 MtrunA17_Chr2g0292091 42.623 305 170 3 51 350 22 326 8.90e-82 253
Msa0634550 MtrunA17_Chr4g0013191 42.857 315 167 5 41 349 33 340 9.66e-82 253
Msa0634550 MtrunA17_Chr5g0400331 45.066 304 154 5 57 349 30 331 9.93e-82 252
Msa0634550 MtrunA17_Chr7g0244461 42.089 316 173 3 37 349 4 312 1.31e-81 251
Msa0634550 MtrunA17_Chr2g0292271 39.752 322 188 4 36 351 11 332 1.67e-81 253
Msa0634550 MtrunA17_Chr4g0013201 43.377 302 161 3 51 349 44 338 2.09e-81 252
Msa0634550 MtrunA17_Chr2g0320031 41.401 314 173 4 40 349 13 319 7.11e-81 249
Msa0634550 MtrunA17_Chr2g0292261 40.810 321 185 3 49 364 25 345 9.33e-81 250
Msa0634550 MtrunA17_Chr5g0402581 41.768 328 181 6 27 349 4 326 2.84e-80 248
Msa0634550 MtrunA17_Chr2g0292101 44.118 306 164 4 51 350 23 327 6.48e-80 248
Msa0634550 MtrunA17_Chr2g0292291 39.815 324 189 4 49 366 26 349 1.52e-79 247
Msa0634550 MtrunA17_Chr3g0107881 41.975 324 171 7 36 349 8 324 3.00e-79 246
Msa0634550 MtrunA17_Chr1g0157051 40.635 315 182 5 35 348 7 317 1.33e-78 244
Msa0634550 MtrunA17_Chr5g0421411 44.056 286 150 5 73 349 1 285 1.09e-77 240
Msa0634550 MtrunA17_Chr7g0244451 42.722 316 171 3 37 349 8 316 2.88e-77 240
Msa0634550 MtrunA17_Chr1g0213061 40.483 331 182 6 26 350 1 322 4.71e-77 240
Msa0634550 MtrunA17_Chr8g0371381 41.639 305 171 5 47 349 20 319 5.85e-77 239
Msa0634550 MtrunA17_Chr4g0076211 42.953 298 158 7 56 349 44 333 9.70e-77 239
Msa0634550 MtrunA17_Chr5g0405991 40.694 317 182 5 35 349 4 316 5.21e-76 237
Msa0634550 MtrunA17_Chr4g0024121 38.889 324 190 5 33 349 4 326 6.99e-76 237
Msa0634550 MtrunA17_Chr6g0477071 40.125 319 173 6 39 349 34 342 3.98e-75 236
Msa0634550 MtrunA17_Chr1g0188431 41.472 299 163 5 53 349 39 327 3.54e-74 233
Msa0634550 MtrunA17_Chr7g0225221 39.498 319 184 5 35 349 7 320 1.78e-73 231
Msa0634550 MtrunA17_Chr1g0148021 37.654 324 189 6 38 349 6 328 2.34e-72 228
Msa0634550 MtrunA17_Chr4g0046131 39.296 341 169 9 35 345 10 342 2.55e-72 229
Msa0634550 MtrunA17_Chr3g0128061 37.730 326 199 3 29 350 2 327 7.84e-72 227
Msa0634550 MtrunA17_Chr7g0254201 38.511 309 170 6 51 351 18 314 1.39e-71 226
Msa0634550 MtrunA17_Chr2g0322861 38.012 342 204 7 13 349 48 386 2.16e-71 228
Msa0634550 MtrunA17_Chr2g0296621 41.275 298 162 6 57 350 54 342 8.43e-71 224
Msa0634550 MtrunA17_Chr7g0268501 38.889 306 180 5 47 349 19 320 1.47e-70 223
Msa0634550 MtrunA17_Chr7g0268521 38.889 306 180 5 47 349 19 320 1.47e-70 223
Msa0634550 MtrunA17_Chr5g0401431 37.582 306 185 4 49 348 23 328 5.75e-70 222
Msa0634550 MtrunA17_Chr7g0254231 37.540 309 168 6 51 350 20 312 1.28e-67 215
Msa0634550 MtrunA17_Chr2g0279041 38.509 322 186 6 35 349 9 325 1.36e-67 216
Msa0634550 MtrunA17_Chr8g0364291 36.875 320 195 4 36 349 6 324 4.61e-67 214
Msa0634550 MtrunA17_Chr5g0432401 39.009 323 140 6 37 348 9 285 8.90e-67 212
Msa0634550 MtrunA17_Chr4g0063671 38.125 320 184 7 38 349 7 320 1.84e-66 213
Msa0634550 MtrunA17_Chr1g0164891 42.193 301 167 6 56 349 92 392 2.85e-65 212
Msa0634550 MtrunA17_Chr6g0451571 38.080 323 187 8 35 349 17 334 6.06e-65 209
Msa0634550 MtrunA17_Chr1g0194151 38.629 321 190 5 36 349 13 333 1.02e-64 209
Msa0634550 MtrunA17_Chr6g0467161 38.796 299 170 7 57 351 49 338 2.51e-64 207
Msa0634550 MtrunA17_Chr6g0460711 35.962 317 196 4 35 349 3 314 1.55e-63 205
Msa0634550 MtrunA17_Chr1g0197411 36.677 319 196 5 37 349 12 330 1.60e-63 206
Msa0634550 MtrunA17_Chr1g0194271 38.110 328 189 5 36 349 13 340 8.58e-63 204
Msa0634550 MtrunA17_Chr6g0467121 38.235 306 172 8 53 353 74 367 3.51e-62 204
Msa0634550 MtrunA17_Chr5g0413051 38.188 309 175 6 53 349 73 377 3.86e-62 203
Msa0634550 MtrunA17_Chr4g0075241 34.641 306 194 3 48 349 24 327 5.41e-62 201
Msa0634550 MtrunA17_Chr6g0467251 35.455 330 189 9 37 351 10 330 2.30e-61 200
Msa0634550 MtrunA17_Chr4g0053871 35.161 310 190 5 45 348 19 323 4.94e-60 196
Msa0634550 MtrunA17_Chr1g0181431 35.505 307 184 5 51 350 25 324 2.93e-59 194
Msa0634550 MtrunA17_Chr4g0072091 36.824 296 178 5 56 345 27 319 5.98e-59 193
Msa0634550 MtrunA17_Chr2g0316481 36.127 346 184 7 41 350 64 408 2.08e-58 194
Msa0634550 MtrunA17_Chr2g0316791 36.416 346 183 7 41 350 64 408 5.29e-58 193
Msa0634550 MtrunA17_Chr1g0181481 34.202 307 188 5 51 350 25 324 2.42e-57 189
Msa0634550 MtrunA17_Chr2g0329641 34.426 305 187 5 53 349 36 335 5.15e-57 189
Msa0634550 MtrunA17_Chr1g0181511 34.202 307 188 6 51 350 25 324 5.56e-57 188
Msa0634550 MtrunA17_Chr2g0316191 35.735 347 185 7 41 350 64 409 1.66e-56 189
Msa0634550 MtrunA17_Chr2g0311251 35.294 340 182 7 47 350 5 342 8.97e-56 186
Msa0634550 MtrunA17_Chr2g0316831 35.549 346 186 7 41 350 100 444 1.94e-55 187
Msa0634550 MtrunA17_Chr4g0074851 32.523 329 200 7 36 349 7 328 4.26e-54 181
Msa0634550 MtrunA17_Chr2g0278671 36.246 309 184 8 49 349 20 323 6.52e-53 177
Msa0634550 MtrunA17_Chr2g0311241 31.401 414 204 9 15 350 21 432 2.20e-52 179
Msa0634550 MtrunA17_Chr2g0279061 39.231 260 146 6 97 349 12 266 3.77e-49 166
Msa0634550 MtrunA17_Chr3g0136751 33.231 325 208 6 30 349 2 322 5.56e-49 167
Msa0634550 MtrunA17_Chr3g0114461 41.000 200 106 5 154 349 1 192 3.93e-43 148
Msa0634550 MtrunA17_Chr2g0316811 36.437 247 139 3 41 270 38 283 5.93e-43 152
Msa0634550 MtrunA17_Chr2g0292281 38.571 210 116 4 145 350 17 217 5.49e-39 139
Msa0634550 MtrunA17_Chr3g0114491 55.963 109 48 0 52 160 17 125 4.38e-38 133
Msa0634550 MtrunA17_Chr4g0004591 29.467 319 162 6 53 348 77 355 6.30e-38 139
Msa0634550 MtrunA17_Chr4g0013811 81.333 75 14 0 163 237 5 79 1.01e-37 130
Msa0634550 MtrunA17_Chr2g0316141 33.564 289 136 9 99 350 11 280 6.81e-34 126
Msa0634550 MtrunA17_Chr2g0316181 33.564 289 136 9 99 350 11 280 6.81e-34 126
Msa0634550 MtrunA17_Chr1g0181501 32.474 194 117 5 164 350 4 190 4.88e-24 97.8
Msa0634550 MtrunA17_Chr1g0181491 38.136 118 71 2 45 162 4 119 5.18e-21 88.2
Msa0634550 MtrunA17_Chr6g0468731 56.338 71 27 2 92 162 22 88 2.29e-19 82.0
Msa0634550 MtrunA17_Chr5g0432321 39.024 123 68 1 174 296 17 132 1.10e-18 81.6
Msa0634550 MtrunA17_Chr3g0104101 36.364 143 81 5 217 350 9 150 2.10e-18 81.3
Msa0634550 MtrunA17_Chr7g0254181 38.889 108 62 3 125 231 31 135 2.72e-17 78.2
Msa0634550 MtrunA17_Chr7g0254171 30.935 139 90 2 99 237 4 136 2.11e-13 67.0
Msa0634550 MtrunA17_Chr3g0137751 29.878 164 91 6 68 223 91 238 7.60e-12 65.9
Msa0634550 MtrunA17_Chr1g0196191 45.205 73 37 2 89 161 23 92 1.65e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0634550 AT2G22420.1 73.101 316 85 0 37 352 7 322 7.75e-178 497
Msa0634550 AT2G18150.1 44.817 328 168 4 35 349 9 336 3.74e-97 292
Msa0634550 AT5G19890.1 46.341 328 166 5 28 349 4 327 2.18e-96 290
Msa0634550 AT4G36430.1 47.351 302 155 3 53 350 30 331 3.96e-96 290
Msa0634550 AT5G06730.1 43.598 328 173 4 41 356 14 341 2.13e-95 288
Msa0634550 AT5G06720.1 44.892 323 166 4 40 350 12 334 9.21e-95 286
Msa0634550 AT5G66390.1 45.847 301 159 3 53 349 33 333 2.49e-93 283
Msa0634550 AT2G18140.1 44.954 327 168 4 35 349 9 335 1.25e-92 281
Msa0634550 AT2G38390.1 44.762 315 168 4 49 357 27 341 3.85e-91 277
Msa0634550 AT4G08780.1 43.987 316 170 4 46 354 17 332 4.48e-90 275
Msa0634550 AT4G16270.1 47.475 297 152 4 56 349 53 348 4.77e-90 275
Msa0634550 AT2G38380.1 44.444 315 169 4 49 357 27 341 2.24e-89 273
Msa0634550 AT4G08770.1 43.671 316 171 4 46 354 17 332 5.65e-89 272
Msa0634550 AT3G50990.1 44.224 303 165 3 51 349 39 341 1.91e-88 270
Msa0634550 AT1G44970.1 45.724 304 160 3 51 349 43 346 1.06e-87 268
Msa0634550 AT5G05340.1 44.156 308 158 4 48 349 25 324 4.87e-87 266
Msa0634550 AT5G19880.1 45.171 321 168 5 37 349 9 329 1.00e-86 265
Msa0634550 AT3G32980.1 43.354 316 172 4 48 356 26 341 7.33e-86 264
Msa0634550 AT5G51890.1 42.991 321 179 3 31 349 4 322 1.42e-85 262
Msa0634550 AT5G58400.1 44.375 320 165 5 36 349 13 325 4.09e-85 261
Msa0634550 AT1G68850.1 41.194 335 173 7 36 349 4 335 9.89e-85 260
Msa0634550 AT3G49110.1 42.857 315 173 4 49 356 29 343 2.04e-84 260
Msa0634550 AT3G49120.1 41.456 316 178 4 48 356 27 342 1.80e-82 255
Msa0634550 AT5G42180.1 41.325 317 182 4 33 348 3 316 4.61e-81 250
Msa0634550 AT1G14540.1 40.125 319 181 4 35 349 3 315 1.62e-80 249
Msa0634550 AT2G35380.1 46.078 306 156 5 53 349 30 335 2.75e-80 249
Msa0634550 AT5G58390.1 42.633 319 170 5 37 349 5 316 1.05e-79 247
Msa0634550 AT1G49570.1 43.377 302 165 4 50 345 45 346 2.34e-79 247
Msa0634550 AT5G17820.1 39.875 321 180 6 32 349 3 313 5.02e-79 245
Msa0634550 AT5G17820.2 39.692 325 183 6 28 349 52 366 3.22e-78 245
Msa0634550 AT1G14550.1 40.625 320 176 6 38 349 8 321 1.54e-77 241
Msa0634550 AT3G49960.1 39.130 322 189 5 35 349 8 329 2.33e-74 234
Msa0634550 AT3G03670.1 38.006 321 187 4 36 349 6 321 8.05e-74 232
Msa0634550 AT4G33420.1 42.373 295 158 5 57 349 41 325 3.10e-73 231
Msa0634550 AT5G64120.1 39.024 328 180 8 36 349 7 328 4.64e-73 230
Msa0634550 AT4G33420.2 42.373 295 158 5 57 349 88 372 1.11e-72 231
Msa0634550 AT5G39580.1 39.432 317 182 7 37 349 9 319 1.03e-71 226
Msa0634550 AT1G05260.1 39.683 315 183 6 41 350 14 326 1.24e-71 226
Msa0634550 AT3G01190.1 42.857 322 165 10 35 349 12 321 1.79e-71 226
Msa0634550 AT4G37520.1 38.361 305 182 4 51 349 25 329 3.97e-71 225
Msa0634550 AT1G71695.1 40.328 305 169 6 57 355 48 345 4.77e-71 226
Msa0634550 AT2G41480.1 39.628 323 177 7 40 349 11 328 1.45e-70 224
Msa0634550 AT4G37530.1 38.710 310 184 4 46 349 20 329 4.06e-70 223
Msa0634550 AT4G11290.1 38.080 323 193 6 33 349 5 326 4.09e-70 223
Msa0634550 AT5G67400.1 38.436 307 183 4 49 349 23 329 2.13e-69 221
Msa0634550 AT5G15180.1 41.447 304 165 7 53 349 32 329 2.45e-69 221
Msa0634550 AT2G34060.1 38.348 339 175 11 37 347 12 344 5.01e-68 218
Msa0634550 AT4G37520.2 37.705 305 181 5 51 349 25 326 5.54e-68 217
Msa0634550 AT3G21770.1 38.730 315 184 6 42 350 18 329 2.90e-67 215
Msa0634550 AT4G30170.1 37.097 310 177 6 50 349 24 325 2.10e-66 213
Msa0634550 AT1G05240.1 39.799 299 171 6 57 349 30 325 6.50e-66 212
Msa0634550 AT1G05250.1 39.799 299 171 6 57 349 30 325 6.50e-66 212
Msa0634550 AT1G77100.1 38.110 328 176 9 35 349 6 319 1.21e-65 211
Msa0634550 AT5G47000.1 38.769 325 185 7 34 349 11 330 1.66e-64 208
Msa0634550 AT3G28200.1 37.624 303 176 5 53 349 21 316 1.85e-64 207
Msa0634550 AT2G18980.1 35.890 326 182 6 37 349 12 323 2.17e-64 208
Msa0634550 AT5G14130.1 34.043 329 191 5 35 349 14 330 2.86e-64 207
Msa0634550 AT4G17690.1 39.145 304 173 6 52 349 25 322 5.52e-64 207
Msa0634550 AT5G14130.2 34.043 329 191 5 35 349 55 371 7.25e-64 208
Msa0634550 AT1G30870.1 40.532 301 165 7 57 351 55 347 1.03e-63 207
Msa0634550 AT5G40150.1 37.584 298 176 4 57 349 36 328 3.02e-62 202
Msa0634550 AT4G26010.1 38.614 303 169 7 51 349 20 309 4.10e-62 201
Msa0634550 AT1G24110.1 34.069 317 201 5 39 349 8 322 4.48e-62 202
Msa0634550 AT2G39040.1 37.785 307 179 7 53 349 46 350 5.51e-62 202
Msa0634550 AT4G26010.2 38.614 303 169 7 51 349 48 337 6.20e-62 202
Msa0634550 AT4G37530.2 40.769 260 150 3 46 301 20 279 7.24e-62 200
Msa0634550 AT4G25980.1 36.774 310 184 6 48 349 21 326 7.75e-62 201
Msa0634550 AT5G64110.1 38.411 302 174 6 54 349 35 330 4.27e-60 197
Msa0634550 AT5G64100.1 35.030 334 188 9 35 349 8 331 5.15e-60 197
Msa0634550 AT4G21960.1 33.535 331 200 7 32 349 4 327 2.08e-59 195
Msa0634550 AT3G17070.1 33.631 336 207 5 27 349 7 339 1.87e-57 190
Msa0634550 AT4G33870.1 32.934 334 179 4 53 345 68 397 6.55e-57 191
Msa0634550 AT1G34510.1 36.111 324 174 10 36 349 9 309 7.71e-57 188
Msa0634550 AT2G24800.1 36.066 305 185 5 51 349 29 329 1.49e-56 187
Msa0634550 AT5G22410.1 37.338 308 178 7 53 352 28 328 2.31e-56 187
Msa0634550 AT2G35380.2 44.534 247 128 5 112 349 1 247 6.18e-56 184
Msa0634550 AT2G37130.1 33.758 314 193 7 44 349 21 327 7.31e-56 186
Msa0634550 AT2G37130.2 34.551 301 182 7 57 349 3 296 2.87e-55 183
Msa0634550 AT2G43480.1 35.644 303 179 6 57 349 39 335 1.11e-53 180
Msa0634550 AT4G31760.1 32.919 322 201 7 36 349 12 326 1.19e-51 175
Msa0634550 AT5G24070.1 33.882 304 185 6 57 350 39 336 1.26e-51 175
Msa0634550 AT5G39580.2 40.722 194 110 3 37 230 9 197 8.71e-44 152
Msa0634550 AT3G17070.2 33.955 268 165 5 90 349 13 276 1.58e-42 149
Msa0634550 AT4G25980.2 39.336 211 120 5 10 220 32 234 8.87e-40 142
Msa0634550 AT2G24800.2 39.175 194 108 4 51 238 29 218 3.10e-34 127
Msa0634550 AT1G77490.2 26.599 297 168 10 87 363 106 372 6.54e-18 85.1
Msa0634550 AT1G77490.1 26.599 297 168 10 87 363 106 372 8.40e-18 84.7
Msa0634550 AT4G08390.2 26.022 269 148 9 87 336 127 363 5.34e-15 75.9
Msa0634550 AT4G08390.5 26.022 269 148 9 87 336 127 363 5.34e-15 75.9
Msa0634550 AT4G08390.1 26.022 269 148 9 87 336 127 363 5.34e-15 75.9
Msa0634550 AT4G08390.3 26.022 269 148 9 87 336 126 362 6.28e-15 75.9
Msa0634550 AT3G42570.1 36.842 95 59 1 125 218 53 147 9.92e-15 71.2

Find 67 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTGCTGATATCATAATTA+TGG 0.210247 4_3:-21868790 Msa0634550:CDS
TGAAGTTGTTGATGAGATTA+AGG 0.231611 4_3:-21868847 Msa0634550:CDS
TGTTGAAGGAATGTTGAAAT+TGG 0.241814 4_3:-21867639 Msa0634550:CDS
CAACCAAGTCCTTGAAATAT+TGG 0.258540 4_3:+21867768 None:intergenic
CCTAACCTCACTTCCCAATT+AGG 0.274883 4_3:+21868112 None:intergenic
TGCAGACAGGAGGACCTAAT+TGG 0.285329 4_3:-21868126 Msa0634550:intron
AACTATGCTTGGAGAGAAAT+TGG 0.290246 4_3:-21868901 Msa0634550:CDS
ATAATGAAAATAAAGCTATT+TGG 0.294069 4_3:+21867336 None:intergenic
ATAACAGAGGCAACACTTCT+TGG 0.295424 4_3:+21869288 None:intergenic
CCTAACTTCACCAGGCTTAT+CGG 0.331197 4_3:+21867604 None:intergenic
AGAATAGCGTCTTATTAATC+TGG 0.333527 4_3:+21867482 None:intergenic
CTAAATACTGGATCAATTGC+AGG 0.334629 4_3:+21867875 None:intergenic
CTCTTGTCTTCAGACAATTT+CGG 0.335453 4_3:+21867554 None:intergenic
GGAAGTGAGGTTAGGAAGAT+TGG 0.339310 4_3:-21868104 Msa0634550:CDS
TCAAGTTCTGCTCTAAATAC+TGG 0.343444 4_3:+21867863 None:intergenic
TTGAACCATGTTTGCGTTAG+TGG 0.354950 4_3:+21869467 None:intergenic
CTCACAAACCCCTTTGTTTG+AGG 0.385011 4_3:+21867701 None:intergenic
TTCACTTTCCCTCAAACAAA+GGG 0.399642 4_3:-21867710 Msa0634550:CDS
CCGATAAGCCTGGTGAAGTT+AGG 0.401902 4_3:-21867604 Msa0634550:CDS
TTCTAGAGATGTTGTAGCAC+TGG 0.411817 4_3:-21868766 Msa0634550:intron
CTGACGATTGTTTCAGCTTG+TGG 0.419242 4_3:+21869342 None:intergenic
GTTGAAGGAATGTTGAAATT+GGG 0.420650 4_3:-21867638 Msa0634550:CDS
AAGGACTTGGTTGGTGGAAG+AGG 0.432566 4_3:-21867758 Msa0634550:CDS
TTTCGATAACCAATATTTCA+AGG 0.438590 4_3:-21867777 Msa0634550:CDS
TCACAAACCCCTTTGTTTGA+GGG 0.448085 4_3:+21867702 None:intergenic
CAATTCTTCCTAACTTCACC+AGG 0.452043 4_3:+21867596 None:intergenic
GCAGACAGGAGGACCTAATT+GGG 0.460309 4_3:-21868125 Msa0634550:intron
TAACCAATATTTCAAGGACT+TGG 0.464692 4_3:-21867771 Msa0634550:CDS
AGGGTCAGGCTTTCCGCTAC+CGG 0.465665 4_3:+21867895 None:intergenic
AAAGACCTTGTAGCACTCTC+AGG 0.475027 4_3:-21867977 Msa0634550:CDS
TACTCTCCACTTTGATTCAG+TGG 0.484455 4_3:+21869530 None:intergenic
TTTCACTTTCCCTCAAACAA+AGG 0.488533 4_3:-21867711 Msa0634550:CDS
GAGGAAGAATAGTGATCAAT+CGG 0.491248 4_3:-21867534 Msa0634550:CDS
ACTGGATCAATTGCAGGGTC+AGG 0.499134 4_3:+21867881 None:intergenic
CCTAATTGGGAAGTGAGGTT+AGG 0.501427 4_3:-21868112 Msa0634550:CDS
CAATATTTCAAGGACTTGGT+TGG 0.502030 4_3:-21867767 Msa0634550:CDS
AGAGCGGTAGCATTAGATCT+TGG 0.511490 4_3:+21868034 None:intergenic
AATTTCTCTCCAAGCATAGT+TGG 0.513582 4_3:+21868903 None:intergenic
ACATCAGCTGATCTTCGACC+TGG 0.522951 4_3:-21869384 Msa0634550:CDS
ATGGTTCAAAACAAAACTAA+AGG 0.529098 4_3:-21869453 Msa0634550:CDS
GTAGCATTAGATCTTGGACT+TGG 0.533618 4_3:+21868040 None:intergenic
GATGATACACCAACTATGCT+TGG 0.538107 4_3:-21868912 Msa0634550:CDS
TATTTCAAGGACTTGGTTGG+TGG 0.538804 4_3:-21867764 Msa0634550:CDS
CGTTAGTGGAAAGAAGAGAC+AGG 0.541805 4_3:+21869481 None:intergenic
TAATTTGTGAAGGGTTGTGA+TGG 0.543375 4_3:-21868948 Msa0634550:intron
AAATCACAGGAGTTGCATCA+AGG 0.548807 4_3:+21867798 None:intergenic
GATGTCGATCAAAATAAGAC+AGG 0.549535 4_3:-21867824 Msa0634550:CDS
TGCCTTTCATTGCAGACAGG+AGG 0.557468 4_3:-21868136 Msa0634550:intron
TTTAGGCTATACAATCAATC+CGG 0.565740 4_3:-21867914 Msa0634550:CDS
GCATTAGAGAAAGCTTGTCC+TGG 0.567211 4_3:-21868822 Msa0634550:CDS
TCTTTCCACTAACGCAAACA+TGG 0.576670 4_3:-21869472 Msa0634550:CDS
CGAAATTGTCTGAAGACAAG+AGG 0.581931 4_3:-21867553 Msa0634550:CDS
CTATACAATCAATCCGGTAG+CGG 0.583155 4_3:-21867908 Msa0634550:CDS
GACTTGCAGTCCGATAAGCC+TGG 0.584575 4_3:-21867614 Msa0634550:CDS
TCAGCACAAGAAACAACTCC+AGG 0.586737 4_3:+21868804 None:intergenic
CTCTCAGGATCACACTCTAT+CGG 0.590516 4_3:-21867962 Msa0634550:CDS
CATCAGCTGATCTTCGACCT+GGG 0.592449 4_3:-21869383 Msa0634550:CDS
TATTGGTTATCGAAAATCAC+AGG 0.593232 4_3:+21867785 None:intergenic
AAATATCCACTGAATCAAAG+TGG 0.594126 4_3:-21869536 None:intergenic
AGTTGTTGATGAGATTAAGG+AGG 0.604842 4_3:-21868844 Msa0634550:CDS
TTGGAAGAGATTAATGAGAG+CGG 0.614681 4_3:+21868018 None:intergenic
GTGATCCTGAGAGTGCTACA+AGG 0.617824 4_3:+21867972 None:intergenic
TAAATACTGGATCAATTGCA+GGG 0.638216 4_3:+21867876 None:intergenic
TCACTTTCCCTCAAACAAAG+GGG 0.650198 4_3:-21867709 Msa0634550:CDS
GAGGACCTAATTGGGAAGTG+AGG 0.676683 4_3:-21868117 Msa0634550:CDS
AAATTGAAATCTCATAACAG+AGG 0.697630 4_3:+21869275 None:intergenic
CTACAAGGTCTTTAACACTG+AGG 0.746017 4_3:+21867987 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATTTAAAAAAATAAT+CGG + chr4_3:21867804-21867823 None:intergenic 0.0%
!!! ATTTTATTTAAAAAAATAAT+CGG + chr4_3:21867804-21867823 None:intergenic 0.0%
!!! ACTTTTATATCTTATTAATT+GGG + chr4_3:21869460-21869479 None:intergenic 10.0%
!!! ACTTTTATATCTTATTAATT+GGG + chr4_3:21869460-21869479 None:intergenic 10.0%
!!! TTCTTTTATGATTTATGAAA+AGG - chr4_3:21868129-21868148 Msa0634550:intron 15.0%
!!! TTTTATTTTAAAACTGAAAG+TGG - chr4_3:21868307-21868326 Msa0634550:intron 15.0%
!!! GACTTTTATATCTTATTAAT+TGG + chr4_3:21869461-21869480 None:intergenic 15.0%
!! ATAATGAAAATAAAGCTATT+TGG + chr4_3:21869508-21869527 None:intergenic 15.0%
!!! TTCTTTTATGATTTATGAAA+AGG - chr4_3:21868129-21868148 Msa0634550:intron 15.0%
!!! TTTTATTTTAAAACTGAAAG+TGG - chr4_3:21868307-21868326 Msa0634550:intron 15.0%
!!! GACTTTTATATCTTATTAAT+TGG + chr4_3:21869461-21869480 None:intergenic 15.0%
!! ATAATGAAAATAAAGCTATT+TGG + chr4_3:21869508-21869527 None:intergenic 15.0%
!!! TTGAAAAGATAGAATTTTGA+TGG + chr4_3:21867636-21867655 None:intergenic 20.0%
!!! TGGCAAAATAAATCTATTTT+AGG - chr4_3:21868327-21868346 Msa0634550:intron 20.0%
!! GAGTATAAATTAGATCAATA+TGG + chr4_3:21868406-21868425 None:intergenic 20.0%
!! CTAATTTATATGGACAATAT+TGG + chr4_3:21868476-21868495 None:intergenic 20.0%
!! TTGAATATGAAGTTTCAATA+AGG + chr4_3:21868669-21868688 None:intergenic 20.0%
!! ATGAAAGGCAAAAAAAAATA+GGG + chr4_3:21868695-21868714 None:intergenic 20.0%
!! AATGAAAGGCAAAAAAAAAT+AGG + chr4_3:21868696-21868715 None:intergenic 20.0%
!!! TTGAAAAGATAGAATTTTGA+TGG + chr4_3:21867636-21867655 None:intergenic 20.0%
!!! TGGCAAAATAAATCTATTTT+AGG - chr4_3:21868327-21868346 Msa0634550:intron 20.0%
!! GAGTATAAATTAGATCAATA+TGG + chr4_3:21868406-21868425 None:intergenic 20.0%
!! CTAATTTATATGGACAATAT+TGG + chr4_3:21868476-21868495 None:intergenic 20.0%
!! TTGAATATGAAGTTTCAATA+AGG + chr4_3:21868669-21868688 None:intergenic 20.0%
!! ATGAAAGGCAAAAAAAAATA+GGG + chr4_3:21868695-21868714 None:intergenic 20.0%
!! AATGAAAGGCAAAAAAAAAT+AGG + chr4_3:21868696-21868715 None:intergenic 20.0%
! ATGGTTCAAAACAAAACTAA+AGG - chr4_3:21867388-21867407 Msa0634550:three_prime_UTR 25.0%
! AAATTGAAATCTCATAACAG+AGG + chr4_3:21867569-21867588 None:intergenic 25.0%
!!! ATGAGTTGTTTAATTTGTGA+AGG - chr4_3:21867883-21867902 Msa0634550:CDS 25.0%
!!! TGAGTTGTTTAATTTGTGAA+GGG - chr4_3:21867884-21867903 Msa0634550:CDS 25.0%
!! TTGTGCTGATATCATAATTA+TGG - chr4_3:21868051-21868070 Msa0634550:CDS 25.0%
!!! TATGGTAAACATTTTAGCAT+CGG + chr4_3:21868388-21868407 None:intergenic 25.0%
!!! GTGTAATTTTGCTGTTTTTT+TGG - chr4_3:21868430-21868449 Msa0634550:intron 25.0%
! ATATGGACAATATTGGAAAA+GGG + chr4_3:21868469-21868488 None:intergenic 25.0%
! TATATGGACAATATTGGAAA+AGG + chr4_3:21868470-21868489 None:intergenic 25.0%
!!! GTTGTTTTTCAATCATGTTT+AGG - chr4_3:21868910-21868929 Msa0634550:CDS 25.0%
! TTTCGATAACCAATATTTCA+AGG - chr4_3:21869064-21869083 Msa0634550:intron 25.0%
!!! TTTTTCAAAGCATTTGTTGA+AGG - chr4_3:21869188-21869207 Msa0634550:intron 25.0%
!! TACTAAAATTTTCAATGACG+CGG + chr4_3:21869422-21869441 None:intergenic 25.0%
! ATGGTTCAAAACAAAACTAA+AGG - chr4_3:21867388-21867407 Msa0634550:three_prime_UTR 25.0%
! AAATTGAAATCTCATAACAG+AGG + chr4_3:21867569-21867588 None:intergenic 25.0%
!!! ATGAGTTGTTTAATTTGTGA+AGG - chr4_3:21867883-21867902 Msa0634550:CDS 25.0%
!!! TGAGTTGTTTAATTTGTGAA+GGG - chr4_3:21867884-21867903 Msa0634550:CDS 25.0%
!! TTGTGCTGATATCATAATTA+TGG - chr4_3:21868051-21868070 Msa0634550:CDS 25.0%
!!! TATGGTAAACATTTTAGCAT+CGG + chr4_3:21868388-21868407 None:intergenic 25.0%
!!! GTGTAATTTTGCTGTTTTTT+TGG - chr4_3:21868430-21868449 Msa0634550:intron 25.0%
! ATATGGACAATATTGGAAAA+GGG + chr4_3:21868469-21868488 None:intergenic 25.0%
! TATATGGACAATATTGGAAA+AGG + chr4_3:21868470-21868489 None:intergenic 25.0%
!!! GTTGTTTTTCAATCATGTTT+AGG - chr4_3:21868910-21868929 Msa0634550:CDS 25.0%
! TTTCGATAACCAATATTTCA+AGG - chr4_3:21869064-21869083 Msa0634550:intron 25.0%
!!! TTTTTCAAAGCATTTGTTGA+AGG - chr4_3:21869188-21869207 Msa0634550:intron 25.0%
!! TACTAAAATTTTCAATGACG+CGG + chr4_3:21869422-21869441 None:intergenic 25.0%
! TGAAGTTGTTGATGAGATTA+AGG - chr4_3:21867994-21868013 Msa0634550:CDS 30.0%
TCGTCTGTGTCTAATTTATA+TGG + chr4_3:21868486-21868505 None:intergenic 30.0%
TCCTTTAATTCAAGGTCAAA+CGG + chr4_3:21868555-21868574 None:intergenic 30.0%
ATGAAGTTTCAATAAGGATC+TGG + chr4_3:21868663-21868682 None:intergenic 30.0%
! TAACACTGAGGTTGTATTTT+TGG + chr4_3:21868845-21868864 None:intergenic 30.0%
TTTAGGCTATACAATCAATC+CGG - chr4_3:21868927-21868946 Msa0634550:CDS 30.0%
TAAATACTGGATCAATTGCA+GGG + chr4_3:21868968-21868987 None:intergenic 30.0%
! TATTGGTTATCGAAAATCAC+AGG + chr4_3:21869059-21869078 None:intergenic 30.0%
TAACCAATATTTCAAGGACT+TGG - chr4_3:21869070-21869089 Msa0634550:intron 30.0%
TGTTGAAGGAATGTTGAAAT+TGG - chr4_3:21869202-21869221 Msa0634550:intron 30.0%
GTTGAAGGAATGTTGAAATT+GGG - chr4_3:21869203-21869222 Msa0634550:intron 30.0%
! AGAATAGCGTCTTATTAATC+TGG + chr4_3:21869362-21869381 None:intergenic 30.0%
! TGAAGTTGTTGATGAGATTA+AGG - chr4_3:21867994-21868013 Msa0634550:CDS 30.0%
TCGTCTGTGTCTAATTTATA+TGG + chr4_3:21868486-21868505 None:intergenic 30.0%
TCCTTTAATTCAAGGTCAAA+CGG + chr4_3:21868555-21868574 None:intergenic 30.0%
ATGAAGTTTCAATAAGGATC+TGG + chr4_3:21868663-21868682 None:intergenic 30.0%
! TAACACTGAGGTTGTATTTT+TGG + chr4_3:21868845-21868864 None:intergenic 30.0%
TTTAGGCTATACAATCAATC+CGG - chr4_3:21868927-21868946 Msa0634550:CDS 30.0%
TAAATACTGGATCAATTGCA+GGG + chr4_3:21868968-21868987 None:intergenic 30.0%
! TATTGGTTATCGAAAATCAC+AGG + chr4_3:21869059-21869078 None:intergenic 30.0%
TAACCAATATTTCAAGGACT+TGG - chr4_3:21869070-21869089 Msa0634550:intron 30.0%
TGTTGAAGGAATGTTGAAAT+TGG - chr4_3:21869202-21869221 Msa0634550:intron 30.0%
GTTGAAGGAATGTTGAAATT+GGG - chr4_3:21869203-21869222 Msa0634550:intron 30.0%
! AGAATAGCGTCTTATTAATC+TGG + chr4_3:21869362-21869381 None:intergenic 30.0%
!!! CATGTTTTTGAGTAATACCC+AGG + chr4_3:21867478-21867497 None:intergenic 35.0%
! TAATTTGTGAAGGGTTGTGA+TGG - chr4_3:21867893-21867912 Msa0634550:CDS 35.0%
AATTTCTCTCCAAGCATAGT+TGG + chr4_3:21867941-21867960 None:intergenic 35.0%
AACTATGCTTGGAGAGAAAT+TGG - chr4_3:21867940-21867959 Msa0634550:CDS 35.0%
! AGTTGTTGATGAGATTAAGG+AGG - chr4_3:21867997-21868016 Msa0634550:CDS 35.0%
CGGAGAAACACACAAAATAT+TGG + chr4_3:21868368-21868387 None:intergenic 35.0%
GACACAGACGAAAATAGATT+TGG - chr4_3:21868495-21868514 Msa0634550:intron 35.0%
ACAGACGAAAATAGATTTGG+TGG - chr4_3:21868498-21868517 Msa0634550:intron 35.0%
ACCGTTTGACCTTGAATTAA+AGG - chr4_3:21868551-21868570 Msa0634550:intron 35.0%
AGATGTCGTCCTTTAATTCA+AGG + chr4_3:21868563-21868582 None:intergenic 35.0%
TTGGAAGAGATTAATGAGAG+CGG + chr4_3:21868826-21868845 None:intergenic 35.0%
CTAAATACTGGATCAATTGC+AGG + chr4_3:21868969-21868988 None:intergenic 35.0%
! TCAAGTTCTGCTCTAAATAC+TGG + chr4_3:21868981-21869000 None:intergenic 35.0%
!!! TTATTTTGATCGACATCTCG+TGG + chr4_3:21869014-21869033 None:intergenic 35.0%
GATGTCGATCAAAATAAGAC+AGG - chr4_3:21869017-21869036 Msa0634550:intron 35.0%
CAACCAAGTCCTTGAAATAT+TGG + chr4_3:21869076-21869095 None:intergenic 35.0%
! CAATATTTCAAGGACTTGGT+TGG - chr4_3:21869074-21869093 Msa0634550:intron 35.0%
TTTCACTTTCCCTCAAACAA+AGG - chr4_3:21869130-21869149 Msa0634550:intron 35.0%
TTCACTTTCCCTCAAACAAA+GGG - chr4_3:21869131-21869150 Msa0634550:intron 35.0%
CTCTTGTCTTCAGACAATTT+CGG + chr4_3:21869290-21869309 None:intergenic 35.0%
GAGGAAGAATAGTGATCAAT+CGG - chr4_3:21869307-21869326 Msa0634550:CDS 35.0%
!!! CATGTTTTTGAGTAATACCC+AGG + chr4_3:21867478-21867497 None:intergenic 35.0%
! TAATTTGTGAAGGGTTGTGA+TGG - chr4_3:21867893-21867912 Msa0634550:CDS 35.0%
AATTTCTCTCCAAGCATAGT+TGG + chr4_3:21867941-21867960 None:intergenic 35.0%
AACTATGCTTGGAGAGAAAT+TGG - chr4_3:21867940-21867959 Msa0634550:CDS 35.0%
! AGTTGTTGATGAGATTAAGG+AGG - chr4_3:21867997-21868016 Msa0634550:CDS 35.0%
CGGAGAAACACACAAAATAT+TGG + chr4_3:21868368-21868387 None:intergenic 35.0%
GACACAGACGAAAATAGATT+TGG - chr4_3:21868495-21868514 Msa0634550:intron 35.0%
ACAGACGAAAATAGATTTGG+TGG - chr4_3:21868498-21868517 Msa0634550:intron 35.0%
ACCGTTTGACCTTGAATTAA+AGG - chr4_3:21868551-21868570 Msa0634550:intron 35.0%
AGATGTCGTCCTTTAATTCA+AGG + chr4_3:21868563-21868582 None:intergenic 35.0%
TTGGAAGAGATTAATGAGAG+CGG + chr4_3:21868826-21868845 None:intergenic 35.0%
CTAAATACTGGATCAATTGC+AGG + chr4_3:21868969-21868988 None:intergenic 35.0%
! TCAAGTTCTGCTCTAAATAC+TGG + chr4_3:21868981-21869000 None:intergenic 35.0%
!!! TTATTTTGATCGACATCTCG+TGG + chr4_3:21869014-21869033 None:intergenic 35.0%
GATGTCGATCAAAATAAGAC+AGG - chr4_3:21869017-21869036 Msa0634550:intron 35.0%
CAACCAAGTCCTTGAAATAT+TGG + chr4_3:21869076-21869095 None:intergenic 35.0%
! CAATATTTCAAGGACTTGGT+TGG - chr4_3:21869074-21869093 Msa0634550:intron 35.0%
TTTCACTTTCCCTCAAACAA+AGG - chr4_3:21869130-21869149 Msa0634550:intron 35.0%
TTCACTTTCCCTCAAACAAA+GGG - chr4_3:21869131-21869150 Msa0634550:intron 35.0%
CTCTTGTCTTCAGACAATTT+CGG + chr4_3:21869290-21869309 None:intergenic 35.0%
GAGGAAGAATAGTGATCAAT+CGG - chr4_3:21869307-21869326 Msa0634550:CDS 35.0%
TCTTTCCACTAACGCAAACA+TGG - chr4_3:21867369-21867388 Msa0634550:three_prime_UTR 40.0%
TTGAACCATGTTTGCGTTAG+TGG + chr4_3:21867377-21867396 None:intergenic 40.0%
ATAACAGAGGCAACACTTCT+TGG + chr4_3:21867556-21867575 None:intergenic 40.0%
GATGATACACCAACTATGCT+TGG - chr4_3:21867929-21867948 Msa0634550:CDS 40.0%
! TTCTAGAGATGTTGTAGCAC+TGG - chr4_3:21868075-21868094 Msa0634550:CDS 40.0%
! TTTTGCCTTTCATTGCAGAC+AGG - chr4_3:21868702-21868721 Msa0634550:intron 40.0%
GTAGCATTAGATCTTGGACT+TGG + chr4_3:21868804-21868823 None:intergenic 40.0%
CTACAAGGTCTTTAACACTG+AGG + chr4_3:21868857-21868876 None:intergenic 40.0%
CTATACAATCAATCCGGTAG+CGG - chr4_3:21868933-21868952 Msa0634550:CDS 40.0%
AAATCACAGGAGTTGCATCA+AGG + chr4_3:21869046-21869065 None:intergenic 40.0%
! TATTTCAAGGACTTGGTTGG+TGG - chr4_3:21869077-21869096 Msa0634550:intron 40.0%
TCACTTTCCCTCAAACAAAG+GGG - chr4_3:21869132-21869151 Msa0634550:intron 40.0%
! TCACAAACCCCTTTGTTTGA+GGG + chr4_3:21869142-21869161 None:intergenic 40.0%
CAATTCTTCCTAACTTCACC+AGG + chr4_3:21869248-21869267 None:intergenic 40.0%
CGAAATTGTCTGAAGACAAG+AGG - chr4_3:21869288-21869307 Msa0634550:CDS 40.0%
TCTTTCCACTAACGCAAACA+TGG - chr4_3:21867369-21867388 Msa0634550:three_prime_UTR 40.0%
TTGAACCATGTTTGCGTTAG+TGG + chr4_3:21867377-21867396 None:intergenic 40.0%
ATAACAGAGGCAACACTTCT+TGG + chr4_3:21867556-21867575 None:intergenic 40.0%
GATGATACACCAACTATGCT+TGG - chr4_3:21867929-21867948 Msa0634550:CDS 40.0%
! TTCTAGAGATGTTGTAGCAC+TGG - chr4_3:21868075-21868094 Msa0634550:CDS 40.0%
! TTTTGCCTTTCATTGCAGAC+AGG - chr4_3:21868702-21868721 Msa0634550:intron 40.0%
GTAGCATTAGATCTTGGACT+TGG + chr4_3:21868804-21868823 None:intergenic 40.0%
CTACAAGGTCTTTAACACTG+AGG + chr4_3:21868857-21868876 None:intergenic 40.0%
CTATACAATCAATCCGGTAG+CGG - chr4_3:21868933-21868952 Msa0634550:CDS 40.0%
AAATCACAGGAGTTGCATCA+AGG + chr4_3:21869046-21869065 None:intergenic 40.0%
! TATTTCAAGGACTTGGTTGG+TGG - chr4_3:21869077-21869096 Msa0634550:intron 40.0%
TCACTTTCCCTCAAACAAAG+GGG - chr4_3:21869132-21869151 Msa0634550:intron 40.0%
! TCACAAACCCCTTTGTTTGA+GGG + chr4_3:21869142-21869161 None:intergenic 40.0%
CAATTCTTCCTAACTTCACC+AGG + chr4_3:21869248-21869267 None:intergenic 40.0%
CGAAATTGTCTGAAGACAAG+AGG - chr4_3:21869288-21869307 Msa0634550:CDS 40.0%
CGTTAGTGGAAAGAAGAGAC+AGG + chr4_3:21867363-21867382 None:intergenic 45.0%
CTGACGATTGTTTCAGCTTG+TGG + chr4_3:21867502-21867521 None:intergenic 45.0%
GCATTAGAGAAAGCTTGTCC+TGG - chr4_3:21868019-21868038 Msa0634550:CDS 45.0%
TCAGCACAAGAAACAACTCC+AGG + chr4_3:21868040-21868059 None:intergenic 45.0%
CCTAACCTCACTTCCCAATT+AGG + chr4_3:21868732-21868751 None:intergenic 45.0%
CCTAATTGGGAAGTGAGGTT+AGG - chr4_3:21868729-21868748 Msa0634550:intron 45.0%
GGAAGTGAGGTTAGGAAGAT+TGG - chr4_3:21868737-21868756 Msa0634550:intron 45.0%
AGAGCGGTAGCATTAGATCT+TGG + chr4_3:21868810-21868829 None:intergenic 45.0%
AAAGACCTTGTAGCACTCTC+AGG - chr4_3:21868864-21868883 Msa0634550:CDS 45.0%
CTCTCAGGATCACACTCTAT+CGG - chr4_3:21868879-21868898 Msa0634550:CDS 45.0%
! CTCACAAACCCCTTTGTTTG+AGG + chr4_3:21869143-21869162 None:intergenic 45.0%
CCTAACTTCACCAGGCTTAT+CGG + chr4_3:21869240-21869259 None:intergenic 45.0%
CGTTAGTGGAAAGAAGAGAC+AGG + chr4_3:21867363-21867382 None:intergenic 45.0%
CTGACGATTGTTTCAGCTTG+TGG + chr4_3:21867502-21867521 None:intergenic 45.0%
GCATTAGAGAAAGCTTGTCC+TGG - chr4_3:21868019-21868038 Msa0634550:CDS 45.0%
TCAGCACAAGAAACAACTCC+AGG + chr4_3:21868040-21868059 None:intergenic 45.0%
CCTAACCTCACTTCCCAATT+AGG + chr4_3:21868732-21868751 None:intergenic 45.0%
CCTAATTGGGAAGTGAGGTT+AGG - chr4_3:21868729-21868748 Msa0634550:intron 45.0%
GGAAGTGAGGTTAGGAAGAT+TGG - chr4_3:21868737-21868756 Msa0634550:intron 45.0%
AGAGCGGTAGCATTAGATCT+TGG + chr4_3:21868810-21868829 None:intergenic 45.0%
AAAGACCTTGTAGCACTCTC+AGG - chr4_3:21868864-21868883 Msa0634550:CDS 45.0%
CTCTCAGGATCACACTCTAT+CGG - chr4_3:21868879-21868898 Msa0634550:CDS 45.0%
! CTCACAAACCCCTTTGTTTG+AGG + chr4_3:21869143-21869162 None:intergenic 45.0%
CCTAACTTCACCAGGCTTAT+CGG + chr4_3:21869240-21869259 None:intergenic 45.0%
!!! TTTTATTTAAAAAAATAATC+GGG + chr4_3:21867803-21867822 None:intergenic 5.0%
!!! TTTTTAAATAAAATAATGAT+AGG - chr4_3:21867810-21867829 Msa0634550:CDS 5.0%
!!! TTTATAAAATTATTTTTCTT+TGG - chr4_3:21867856-21867875 Msa0634550:CDS 5.0%
!!! TTTTATTTAAAAAAATAATC+GGG + chr4_3:21867803-21867822 None:intergenic 5.0%
!!! TTTTTAAATAAAATAATGAT+AGG - chr4_3:21867810-21867829 Msa0634550:CDS 5.0%
!!! TTTATAAAATTATTTTTCTT+TGG - chr4_3:21867856-21867875 Msa0634550:CDS 5.0%
ACATCAGCTGATCTTCGACC+TGG - chr4_3:21867457-21867476 Msa0634550:three_prime_UTR 50.0%
CATCAGCTGATCTTCGACCT+GGG - chr4_3:21867458-21867477 Msa0634550:three_prime_UTR 50.0%
TGCCTTTCATTGCAGACAGG+AGG - chr4_3:21868705-21868724 Msa0634550:intron 50.0%
GTCCTCCTGTCTGCAATGAA+AGG + chr4_3:21868710-21868729 None:intergenic 50.0%
TGCAGACAGGAGGACCTAAT+TGG - chr4_3:21868715-21868734 Msa0634550:intron 50.0%
GCAGACAGGAGGACCTAATT+GGG - chr4_3:21868716-21868735 Msa0634550:intron 50.0%
GAGGACCTAATTGGGAAGTG+AGG - chr4_3:21868724-21868743 Msa0634550:intron 50.0%
!! GTGATCCTGAGAGTGCTACA+AGG + chr4_3:21868872-21868891 None:intergenic 50.0%
ACTGGATCAATTGCAGGGTC+AGG + chr4_3:21868963-21868982 None:intergenic 50.0%
!! AAGGACTTGGTTGGTGGAAG+AGG - chr4_3:21869083-21869102 Msa0634550:intron 50.0%
CCGATAAGCCTGGTGAAGTT+AGG - chr4_3:21869237-21869256 Msa0634550:intron 50.0%
ACATCAGCTGATCTTCGACC+TGG - chr4_3:21867457-21867476 Msa0634550:three_prime_UTR 50.0%
CATCAGCTGATCTTCGACCT+GGG - chr4_3:21867458-21867477 Msa0634550:three_prime_UTR 50.0%
TGCCTTTCATTGCAGACAGG+AGG - chr4_3:21868705-21868724 Msa0634550:intron 50.0%
GTCCTCCTGTCTGCAATGAA+AGG + chr4_3:21868710-21868729 None:intergenic 50.0%
TGCAGACAGGAGGACCTAAT+TGG - chr4_3:21868715-21868734 Msa0634550:intron 50.0%
GCAGACAGGAGGACCTAATT+GGG - chr4_3:21868716-21868735 Msa0634550:intron 50.0%
GAGGACCTAATTGGGAAGTG+AGG - chr4_3:21868724-21868743 Msa0634550:intron 50.0%
!! GTGATCCTGAGAGTGCTACA+AGG + chr4_3:21868872-21868891 None:intergenic 50.0%
ACTGGATCAATTGCAGGGTC+AGG + chr4_3:21868963-21868982 None:intergenic 50.0%
!! AAGGACTTGGTTGGTGGAAG+AGG - chr4_3:21869083-21869102 Msa0634550:intron 50.0%
CCGATAAGCCTGGTGAAGTT+AGG - chr4_3:21869237-21869256 Msa0634550:intron 50.0%
GACTTGCAGTCCGATAAGCC+TGG - chr4_3:21869227-21869246 Msa0634550:intron 55.0%
GACTTGCAGTCCGATAAGCC+TGG - chr4_3:21869227-21869246 Msa0634550:intron 55.0%
AGGGTCAGGCTTTCCGCTAC+CGG + chr4_3:21868949-21868968 None:intergenic 60.0%
AGGGTCAGGCTTTCCGCTAC+CGG + chr4_3:21868949-21868968 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 21867313 21869550 21867313 ID=Msa0634550;Name=Msa0634550
chr4_3 mRNA 21867313 21869550 21867313 ID=Msa0634550-mRNA-1;Parent=Msa0634550;Name=Msa0634550-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|1|1|1|1|3|216|366
chr4_3 exon 21867313 21868143 21867313 ID=Msa0634550-mRNA-1:exon:5686;Parent=Msa0634550-mRNA-1
chr4_3 exon 21868767 21868958 21868767 ID=Msa0634550-mRNA-1:exon:5685;Parent=Msa0634550-mRNA-1
chr4_3 exon 21869257 21869550 21869257 ID=Msa0634550-mRNA-1:exon:5684;Parent=Msa0634550-mRNA-1
chr4_3 CDS 21869257 21869550 21869257 ID=Msa0634550-mRNA-1:cds;Parent=Msa0634550-mRNA-1
chr4_3 CDS 21868767 21868958 21868767 ID=Msa0634550-mRNA-1:cds;Parent=Msa0634550-mRNA-1
chr4_3 CDS 21867529 21868143 21867529 ID=Msa0634550-mRNA-1:cds;Parent=Msa0634550-mRNA-1
chr4_3 three_prime_UTR 21867313 21867528 21867313 ID=Msa0634550-mRNA-1:three_prime_utr;Parent=Msa0634550-mRNA-1
Gene Sequence

>Msa0634550

ACTGAATCAAAGTGGAGAGTAACAAAATCTACAAAATTTGTAGTTTACCTGTCTCTTCTTTCCACTAACGCAAACATGGTTCAAAACAAAACTAAAGGTAACATGTTTATGTTTCTGATCTTCATCATAAACATAATCATAGTAACATCAGCTGATCTTCGACCTGGGTATTACTCAAAAACATGTCCACAAGCTGAAACAATCGTCAGAGATGTTATGAGAAATGCTCTTAAAAAAGAACCAAGAAGTGTTGCCTCTGTTATGAGATTTCAATTTCATGATTGCTTTGTTAATGGTTGTGATGGTTCTGTGTTACTTGATGATACACCAACTATGCTTGGAGAGAAATTGGCTCTTTCAAATATAAATTCACTTAGATCATTTGAAGTTGTTGATGAGATTAAGGAGGCATTAGAGAAAGCTTGTCCTGGAGTTGTTTCTTGTGCTGATATCATAATTATGGCTTCTAGAGATGTTGTAGCACTGACAGGAGGACCTAATTGGGAAGTGAGGTTAGGAAGATTGGACAGCTTAACAGCAAGTCAAGATAACTCAAGTAATATCATGCCAAGTCCAAGATCTAATGCTACCGCTCTCATTAATCTCTTCCAAAAATACAACCTCAGTGTTAAAGACCTTGTAGCACTCTCAGGATCACACTCTATCGGCAAAGCTCGTTGTTTTTCAATCATGTTTAGGCTATACAATCAATCCGGTAGCGGAAAGCCTGACCCTGCAATTGATCCAGTATTTAGAGCAGAACTTGACAAGCTATGTCCACGAGATGTCGATCAAAATAAGACAGGAAACCTTGATGCAACTCCTGTGATTTTCGATAACCAATATTTCAAGGACTTGGTTGGTGGAAGAGGATTTCTCAACTCTGATCAAACACTTTTCACTTTCCCTCAAACAAAGGGGTTTGTGAGTTTGTTTAGCGAAGATCAAAGTGAGTTTTTCAAAGCATTTGTTGAAGGAATGTTGAAATTGGGTGACTTGCAGTCCGATAAGCCTGGTGAAGTTAGGAAGAATTGCAGAGTTGTCAATGCTCGTCCGAAATTGTCTGAAGACAAGAGGAAGAATAGTGATCAATCGGTATAA
Protein sequence

>Msa0634550

TESKWRVTKSTKFVVYLSLLSTNANMVQNKTKGNMFMFLIFIINIIIVTSADLRPGYYSKTCPQAETIVRDVMRNALKKEPRSVASVMRFQFHDCFVNGCDGSVLLDDTPTMLGEKLALSNINSLRSFEVVDEIKEALEKACPGVVSCADIIIMASRDVVALTGGPNWEVRLGRLDSLTASQDNSSNIMPSPRSNATALINLFQKYNLSVKDLVALSGSHSIGKARCFSIMFRLYNQSGSGKPDPAIDPVFRAELDKLCPRDVDQNKTGNLDATPVIFDNQYFKDLVGGRGFLNSDQTLFTFPQTKGFVSLFSEDQSEFFKAFVEGMLKLGDLQSDKPGEVRKNCRVVNARPKLSEDKRKNSDQSV*