AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0639300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0639300 MtrunA17_Chr4g0050761 97.326 374 3 1 1 367 1 374 0.0 745
Msa0639300 MtrunA17_Chr4g0050751 94.030 67 4 0 409 475 1 67 1.02e-38 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0639300 AT3G26410.1 72.407 482 121 3 1 475 1 477 0.0 734

Find 167 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCATTTATTTAATTTAA+TGG 0.100569 4_3:-34963224 Msa0639300:three_prime_UTR
GATGCAACACCTTGAATTTA+AGG 0.147556 4_3:-34963517 Msa0639300:CDS
TTATATAACATTGGCCAATT+AGG 0.162905 4_3:-34962972 Msa0639300:three_prime_UTR
TGGAATCTAACAGCACTTTC+AGG 0.261458 4_3:-34966808 Msa0639300:CDS
ATCAAAAGCTCCAAACAATT+TGG 0.282090 4_3:+34967327 None:intergenic
GAATGGCGATTATAAGATTA+AGG 0.285901 4_3:-34963418 Msa0639300:CDS
CTTGTTGCAGCAGCTCATTT+TGG 0.299821 4_3:-34965345 Msa0639300:CDS
TATATAACATTGGCCAATTA+GGG 0.302844 4_3:-34962971 Msa0639300:three_prime_UTR
TCCAGTGGATGCTCAGTTAA+AGG 0.304687 4_3:-34963442 Msa0639300:CDS
AGGATTACTGTTGATACCTT+TGG 0.304749 4_3:-34966788 Msa0639300:CDS
CTCTTTCAGCCCCGGACGCC+AGG 0.306574 4_3:+34964847 None:intergenic
GGGGATGAACGTCGTCGTTT+TGG 0.306689 4_3:+34967299 None:intergenic
TCTTTCTTGCATTCTAAGTT+AGG 0.325262 4_3:-34963041 Msa0639300:three_prime_UTR
ACCAAATGGAAAGGAGAATC+TGG 0.336337 4_3:+34967244 None:intergenic
TTGGCTAAAGATTCGACTTC+GGG 0.336501 4_3:+34967346 None:intergenic
TTGAAAAGCCGTACTTATCT+TGG 0.337225 4_3:-34965471 Msa0639300:CDS
ATAATATGTGACCCTCCTTA+TGG 0.341218 4_3:-34963900 Msa0639300:CDS
AGCTTAAAACATGGATGCTC+CGG 0.349016 4_3:+34963642 None:intergenic
AACCTTCCTCCCTGGCGTCC+GGG 0.349511 4_3:-34964857 Msa0639300:CDS
TTCTTAGTTCACGATATTGC+AGG 0.351630 4_3:-34963599 Msa0639300:CDS
CAACCTTCCTCCCTGGCGTC+CGG 0.354356 4_3:-34964858 Msa0639300:CDS
CCCAGATTCTCCTTTCCATT+TGG 0.355570 4_3:-34967245 Msa0639300:CDS
GAAAACCAGAGCACAACTTC+TGG 0.364397 4_3:-34965611 Msa0639300:CDS
CATCTTCTAGCCACTTTACA+TGG 0.371871 4_3:+34963490 None:intergenic
GAATCTTTAGCCAAATTGTT+TGG 0.372629 4_3:-34967337 Msa0639300:CDS
TTCAAAACCCTCGCCGGAAC+TGG 0.373226 4_3:+34967510 None:intergenic
AGGGTGCTGACATTGACATT+AGG 0.374088 4_3:-34965147 Msa0639300:CDS
GTGTGCCACGTGGCCCTAAT+TGG 0.375158 4_3:+34962958 None:intergenic
TATGGCAACTTTCTCTCATC+TGG 0.376539 4_3:+34966833 None:intergenic
CGAGCCGGAGGACGCAAATC+TGG 0.377832 4_3:-34963873 Msa0639300:CDS
GGGTGCTGACATTGACATTA+GGG 0.379288 4_3:-34965146 Msa0639300:CDS
TAAAATTACTCCAAACATTA+CGG 0.379933 4_3:+34965098 None:intergenic
GCTGCCAAGATGCTTGTATT+GGG 0.380400 4_3:-34963726 Msa0639300:CDS
TGCTGCCAAGATGCTTGTAT+TGG 0.383669 4_3:-34963727 Msa0639300:CDS
GTGCTGTTAGATTCCAAGTA+TGG 0.387116 4_3:+34966815 None:intergenic
GGATTACTGTTGATACCTTT+GGG 0.387647 4_3:-34966787 Msa0639300:CDS
GAGGGAGCTTCCATTGCAAC+TGG 0.392144 4_3:+34967278 None:intergenic
CATGGTTATCCTTAAATTCA+AGG 0.394191 4_3:+34963508 None:intergenic
TTACACAGAGGAAATAAGTT+TGG 0.394825 4_3:-34963547 Msa0639300:CDS
TTGTCGTCCGGAACAATGTA+AGG 0.408258 4_3:+34963819 None:intergenic
TGTGGAGCCTTACATTGTTC+CGG 0.409333 4_3:-34963826 Msa0639300:CDS
TGTATGAGCTATGGGGTGAA+GGG 0.410913 4_3:-34966895 Msa0639300:CDS
AAACTTATTTCCTCTGTGTA+AGG 0.415891 4_3:+34963549 None:intergenic
GTTCACTTATATCCCTTTCA+AGG 0.417672 4_3:-34966723 Msa0639300:intron
GTCTCCACATAATCATTTCC+CGG 0.424080 4_3:-34963661 Msa0639300:CDS
TGCTGCAACAAGAATACTTC+CGG 0.424884 4_3:+34965356 None:intergenic
CAACCAAGCACTGGCTACTC+CGG 0.428014 4_3:-34965409 Msa0639300:CDS
ATACTTCCGGTTCCAACAAA+AGG 0.429546 4_3:+34965369 None:intergenic
GCGGTCCTGACCGTAATGTT+TGG 0.431493 4_3:-34965108 Msa0639300:CDS
AGGAAATAAGTTTGGCAGCT+AGG 0.434880 4_3:-34963539 Msa0639300:CDS
ATGTATGAGCTATGGGGTGA+AGG 0.439043 4_3:-34966896 Msa0639300:CDS
AAGTTAGGCACTGTTGTTGA+AGG 0.440982 4_3:-34963026 Msa0639300:three_prime_UTR
GGTGGTAGGAAGCTACTAAA+GGG 0.441482 4_3:-34963852 Msa0639300:CDS
AACCAAGCACTGGCTACTCC+GGG 0.444181 4_3:-34965408 Msa0639300:CDS
GGGCAGCACTTGTGTACAAT+TGG 0.445895 4_3:-34963005 Msa0639300:three_prime_UTR
TCCTTTAACTGAGCATCCAC+TGG 0.446225 4_3:+34963441 None:intergenic
ATTCTTACTCTCCTTAGCTT+AGG 0.446241 4_3:-34963192 Msa0639300:three_prime_UTR
TGAGAGAAAGTTGCCATACT+TGG 0.448763 4_3:-34966828 Msa0639300:CDS
CTGAAGGGAGATTGACCAAA+TGG 0.448856 4_3:+34967230 None:intergenic
GAATGAGTTCCTTATGCTCC+TGG 0.450036 4_3:+34966750 None:intergenic
GTGAAGTTGGTGCTGCTGAT+AGG 0.451208 4_3:-34965515 Msa0639300:CDS
GGGTAGCTATGAGGAGTTGA+AGG 0.451262 4_3:-34966873 Msa0639300:CDS
ATCAGCCAGAAGTTGTGCTC+TGG 0.451410 4_3:+34965606 None:intergenic
TGAAAACTGAAGTCCAGTTC+CGG 0.451487 4_3:-34967523 Msa0639300:five_prime_UTR
TGGGAAGGTTATTAGTCTCC+AGG 0.454971 4_3:-34966768 Msa0639300:CDS
TCCCCGGAGTAGCCAGTGCT+TGG 0.456610 4_3:+34965406 None:intergenic
GACTCTTCTTCTCTCAATAC+AGG 0.466540 4_3:+34963681 None:intergenic
TGAAAAGCCGTACTTATCTT+GGG 0.468843 4_3:-34965470 Msa0639300:CDS
ACCTTCCTCCCTGGCGTCCG+GGG 0.473468 4_3:-34964856 Msa0639300:CDS
CCTCCGGCTCGCACTCCATA+AGG 0.474138 4_3:+34963885 None:intergenic
TATTAGTCTCCAGGAGCATA+AGG 0.475181 4_3:-34966759 Msa0639300:CDS
AAGGAGAATCTGGGTGATGA+TGG 0.479452 4_3:+34967254 None:intergenic
AAAGGACACGCAACCTTGAA+AGG 0.490367 4_3:+34966710 None:intergenic
TCAGCCCTTAAAAGACCAAC+TGG 0.494342 4_3:+34964884 None:intergenic
TTACTGACAATGGTTAAGAT+AGG 0.494959 4_3:-34963573 Msa0639300:CDS
TGGTGGTAGGAAGCTACTAA+AGG 0.498563 4_3:-34963853 Msa0639300:CDS
GAAAATACGTTTAGACTTCA+CGG 0.501307 4_3:-34963374 Msa0639300:exon
CTGGCGTCCGGGGCTGAAAG+AGG 0.505882 4_3:-34964846 Msa0639300:intron
GATTCAAACAAGAAATATAG+AGG 0.507958 4_3:-34963396 Msa0639300:CDS
CGGAGTAGCCAGTGCTTGGT+TGG 0.508374 4_3:+34965410 None:intergenic
TTACGAGCAATTTCTTCTGA+AGG 0.511567 4_3:+34967214 None:intergenic
ACCACCAGATTTGCGTCCTC+CGG 0.513118 4_3:+34963869 None:intergenic
GCCCCGGACGCCAGGGAGGA+AGG 0.514958 4_3:+34964855 None:intergenic
TCTAATGGCCAACCAAGCAC+TGG 0.516528 4_3:-34965418 Msa0639300:CDS
TCCGCCCAATACAAGCATCT+TGG 0.517479 4_3:+34963722 None:intergenic
GAGCATAAGGAACTCATTCA+AGG 0.518919 4_3:-34966746 Msa0639300:CDS
GGTGTATGTTTCTATGTCCA+AGG 0.520697 4_3:-34963341 Msa0639300:three_prime_UTR
CATGTAAAGTGGCTAGAAGA+TGG 0.524567 4_3:-34963489 Msa0639300:CDS
AAAATACGTTTAGACTTCAC+GGG 0.525758 4_3:-34963373 Msa0639300:exon
TACTGTTGATACCTTTGGGA+AGG 0.526326 4_3:-34966783 Msa0639300:CDS
TACGAGCAATTTCTTCTGAA+GGG 0.530624 4_3:+34967215 None:intergenic
CCGGCTCGCACTCCATAAGG+AGG 0.532511 4_3:+34963888 None:intergenic
CCTCCTTATGGAGTGCGAGC+CGG 0.533732 4_3:-34963888 Msa0639300:CDS
TCTTTCAGCCCCGGACGCCA+GGG 0.533800 4_3:+34964848 None:intergenic
GAAGGGAATGTATGAGCTAT+GGG 0.534827 4_3:-34966903 Msa0639300:CDS
TTATCTTGGGCCAACAGCCA+TGG 0.536034 4_3:-34965457 Msa0639300:CDS
ATCTCCGCATCCATGGCTGT+TGG 0.537799 4_3:+34965447 None:intergenic
GGGTCATAAACTAGTTTCCC+CGG 0.538697 4_3:+34965390 None:intergenic
TACTTCCGGTTCCAACAAAA+GGG 0.538775 4_3:+34965370 None:intergenic
CTGAAGTCCAGTTCCGGCGA+GGG 0.538778 4_3:-34967517 Msa0639300:five_prime_UTR
GTATATGTTGCAGTATGGAT+TGG 0.538931 4_3:-34964912 Msa0639300:intron
AGACTTCACGGGTTAGATGC+CGG 0.539961 4_3:-34963362 Msa0639300:three_prime_UTR
ACACACTCAACTAAACTGTA+AGG 0.540832 4_3:+34963768 None:intergenic
CTAGCTTAAGAAGTTTGAGA+TGG 0.541249 4_3:+34963145 None:intergenic
AGCTTAGGTTATCTCAAACC+TGG 0.541879 4_3:-34963177 Msa0639300:three_prime_UTR
CCCTGTTTCAAAACCCTCGC+CGG 0.544375 4_3:+34967504 None:intergenic
GAATCTGGGTGATGATGGAG+AGG 0.548209 4_3:+34967259 None:intergenic
TTAAGCTAGCAATGGTAGCT+CGG 0.549255 4_3:-34963131 Msa0639300:three_prime_UTR
GATGCTCAGTTAAAGGAGAA+TGG 0.551488 4_3:-34963435 Msa0639300:CDS
AAATTTACCTCTTTCAGCCC+CGG 0.552977 4_3:+34964839 None:intergenic
TGAAGGGAATGTATGAGCTA+TGG 0.553852 4_3:-34966904 Msa0639300:CDS
TTTGGCTAAAGATTCGACTT+CGG 0.554968 4_3:+34967345 None:intergenic
TTATGTAGGTATACTTGTGA+AGG 0.555230 4_3:-34966921 Msa0639300:intron
AAGGACACGCAACCTTGAAA+GGG 0.557597 4_3:+34966711 None:intergenic
GTGTATGTTTCTATGTCCAA+GGG 0.557871 4_3:-34963340 Msa0639300:three_prime_UTR
ACGTTCATCCCCAGTTGCAA+TGG 0.557926 4_3:-34967288 Msa0639300:CDS
GTATGAGCTATGGGGTGAAG+GGG 0.562156 4_3:-34966894 Msa0639300:CDS
GCTTAAAACATGGATGCTCC+GGG 0.564471 4_3:+34963643 None:intergenic
CTGACAACAACCTTCCTCCC+TGG 0.564474 4_3:-34964865 Msa0639300:CDS
TTACTCCAAACATTACGGTC+AGG 0.565054 4_3:+34965103 None:intergenic
TTAAGGATAACCATGTAAAG+TGG 0.566285 4_3:-34963500 Msa0639300:CDS
TCTTAGTTCACGATATTGCA+GGG 0.569214 4_3:-34963598 Msa0639300:CDS
AAAAGCTATCTCCGCATCCA+TGG 0.574264 4_3:+34965440 None:intergenic
TGGGCCAACAGCCATGGATG+CGG 0.579242 4_3:-34965451 Msa0639300:CDS
AGAATACTGATAAAAGCGTA+TGG 0.579612 4_3:+34963061 None:intergenic
TATGAGCTATGGGGTGAAGG+GGG 0.582219 4_3:-34966893 Msa0639300:CDS
CCAAATGGAAAGGAGAATCT+GGG 0.583278 4_3:+34967245 None:intergenic
AAAGGGGCATATGGGTACAC+TGG 0.584470 4_3:+34963293 None:intergenic
AGGGAGCTTCCATTGCAACT+GGG 0.585486 4_3:+34967279 None:intergenic
GTTTGAGATAACCTAAGCTA+AGG 0.586680 4_3:+34963181 None:intergenic
ATAGAAATTGATAATTGTGA+AGG 0.588940 4_3:-34965585 Msa0639300:intron
AGTTAGGCACTGTTGTTGAA+GGG 0.595711 4_3:-34963025 Msa0639300:three_prime_UTR
GGGAGCTTCCATTGCAACTG+GGG 0.597227 4_3:+34967280 None:intergenic
TTGAGATGGTAATCACCACC+AGG 0.597308 4_3:+34963159 None:intergenic
CCTTATGGAGTGCGAGCCGG+AGG 0.597901 4_3:-34963885 Msa0639300:CDS
CAAACTTCTTAAGCTAGCAA+TGG 0.605395 4_3:-34963139 Msa0639300:three_prime_UTR
TTGCAGGGTATTACTGACAA+TGG 0.611706 4_3:-34963583 Msa0639300:CDS
AGCATAAGGAACTCATTCAA+GGG 0.616860 4_3:-34966745 Msa0639300:CDS
GCCGGAGGACGCAAATCTGG+TGG 0.617590 4_3:-34963870 Msa0639300:CDS
GAGGACGCAAATCTGGTGGT+AGG 0.619730 4_3:-34963866 Msa0639300:CDS
TTCAGCCCCGGACGCCAGGG+AGG 0.619819 4_3:+34964851 None:intergenic
TGCTCCGGGAAATGATTATG+TGG 0.620117 4_3:+34963657 None:intergenic
TATGTAGGTATACTTGTGAA+GGG 0.620517 4_3:-34966920 Msa0639300:intron
GACATTAGGGTAGTACGTGA+TGG 0.622739 4_3:-34965133 Msa0639300:CDS
GGGAGATTGACCAAATGGAA+AGG 0.626339 4_3:+34967235 None:intergenic
AAACTGTAAGGTGCAGTCGA+TGG 0.631902 4_3:+34963780 None:intergenic
AGGGTAGTACGTGATGGACG+CGG 0.642357 4_3:-34965127 Msa0639300:CDS
CGGCTCGCACTCCATAAGGA+GGG 0.646260 4_3:+34963889 None:intergenic
GAAGAAATCAGCTTAAAACA+TGG 0.646843 4_3:+34963633 None:intergenic
CTGTTGGCCCAAGATAAGTA+CGG 0.648222 4_3:+34965463 None:intergenic
ACTGAAGTCCAGTTCCGGCG+AGG 0.652000 4_3:-34967518 Msa0639300:five_prime_UTR
TATGGATTGGAAATGCCAGT+TGG 0.653758 4_3:-34964899 Msa0639300:CDS
AAGGTGCAGTCGATGGTATG+TGG 0.664482 4_3:+34963787 None:intergenic
GCCAAGATGCTTGTATTGGG+CGG 0.667054 4_3:-34963723 Msa0639300:CDS
GTGGTAGGAAGCTACTAAAG+GGG 0.679191 4_3:-34963851 Msa0639300:CDS
ACCAAGCACTGGCTACTCCG+GGG 0.680846 4_3:-34965407 Msa0639300:CDS
GAGACTAATAACCTTCCCAA+AGG 0.682399 4_3:+34966772 None:intergenic
TGGTAGGAAGCTACTAAAGG+GGG 0.688576 4_3:-34963850 Msa0639300:CDS
TTAGGTTATCTCAAACCTGG+TGG 0.690004 4_3:-34963174 Msa0639300:three_prime_UTR
AATCTGGGTGATGATGGAGA+GGG 0.697131 4_3:+34967260 None:intergenic
TGTATGTTTCTATGTCCAAG+GGG 0.722175 4_3:-34963339 Msa0639300:three_prime_UTR
GAAAACACATAGATACCACA+TGG 0.722516 4_3:+34967396 None:intergenic
TTGGACATAGAAACATACAC+CGG 0.731234 4_3:+34963343 None:intergenic
GAAGAGACAACAAAACCATG+TGG 0.737188 4_3:-34967411 Msa0639300:exon
ATTGGCCAATTAGGGCCACG+TGG 0.744890 4_3:-34962963 None:intergenic
AAGGGAATGTATGAGCTATG+GGG 0.749415 4_3:-34966902 Msa0639300:CDS
TAAGATAGGTCCTTACACAG+AGG 0.768257 4_3:-34963559 Msa0639300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATGACAAATAATTAAA+GGG + chr4_3:34963377-34963396 None:intergenic 10.0%
!! TAAAAATGACAAATAATTAA+AGG + chr4_3:34963378-34963397 None:intergenic 10.0%
!!! AAATTTTTGATTTTTTTATG+TGG - chr4_3:34963414-34963433 Msa0639300:CDS 10.0%
!!! AATTTTTGATTTTTTTATGT+GGG - chr4_3:34963415-34963434 Msa0639300:CDS 10.0%
!!! AATTTTATTTTTTTTATGTG+GGG - chr4_3:34963540-34963559 Msa0639300:CDS 10.0%
!! CAATAAATAAATCAAATTAA+AGG + chr4_3:34963801-34963820 None:intergenic 10.0%
!!! ATTTTTTCAATTAAGATAAT+AGG - chr4_3:34964309-34964328 Msa0639300:intron 10.0%
!!! TTTTTTCAATTAAGATAATA+GGG - chr4_3:34964310-34964329 Msa0639300:intron 10.0%
!! AATAGAAAATTATAAACAAT+AGG + chr4_3:34966214-34966233 None:intergenic 10.0%
!!! TTCTCATTTATTTAATTTAA+TGG - chr4_3:34967266-34967285 Msa0639300:CDS 10.0%
!!! ATTTTAATGTTATATAACAT+TGG - chr4_3:34967509-34967528 Msa0639300:five_prime_UTR 10.0%
!!! AAAGTTTCAATTTTTCATAA+TGG - chr4_3:34963445-34963464 Msa0639300:CDS 15.0%
!!! AAGTTTCAATTTTTCATAAT+GGG - chr4_3:34963446-34963465 Msa0639300:CDS 15.0%
!!! AAGTTTATCATTTTTTATAG+TGG - chr4_3:34963476-34963495 Msa0639300:CDS 15.0%
!!! AGTTTATCATTTTTTATAGT+GGG - chr4_3:34963477-34963496 Msa0639300:CDS 15.0%
!!! ATTTGATTTATTTATTGCAT+TGG - chr4_3:34963804-34963823 Msa0639300:CDS 15.0%
!!! TTTTTCAATTAAGATAATAG+GGG - chr4_3:34964311-34964330 Msa0639300:intron 15.0%
!! AAATTATAAACAATAGGATT+TGG + chr4_3:34966208-34966227 None:intergenic 15.0%
!!! GGTTGTTATTATATATATAA+TGG - chr4_3:34966360-34966379 Msa0639300:intron 15.0%
!! ATATCACAAAATTGAAAAAA+GGG + chr4_3:34967217-34967236 None:intergenic 15.0%
!! AATATCACAAAATTGAAAAA+AGG + chr4_3:34967218-34967237 None:intergenic 15.0%
!!! TATTTGTCATTTTTATTTCG+TGG - chr4_3:34963383-34963402 Msa0639300:CDS 20.0%
!!! ATTTGTCATTTTTATTTCGT+GGG - chr4_3:34963384-34963403 Msa0639300:CDS 20.0%
!! TAAATAGCAATTGATAGATT+GGG - chr4_3:34963881-34963900 Msa0639300:CDS 20.0%
!!! AAAAAGTACAATCAAACAAA+GGG + chr4_3:34964570-34964589 None:intergenic 20.0%
!!! AAAAAAGTACAATCAAACAA+AGG + chr4_3:34964571-34964590 None:intergenic 20.0%
!!! ATAGAAATTGATAATTGTGA+AGG - chr4_3:34964905-34964924 Msa0639300:intron 20.0%
!! AGAGAAAAAAGAAAAAGAAA+AGG + chr4_3:34965210-34965229 None:intergenic 20.0%
!! ATACTTAATCTAAATTGTTC+AGG - chr4_3:34965323-34965342 Msa0639300:intron 20.0%
!! TACTTAATCTAAATTGTTCA+GGG - chr4_3:34965324-34965343 Msa0639300:intron 20.0%
!! TAAAATTACTCCAAACATTA+CGG + chr4_3:34965395-34965414 None:intergenic 20.0%
!! ATCTTTCTGATAAACTTATT+TGG - chr4_3:34965553-34965572 Msa0639300:intron 20.0%
!! AATTTACAAAGAAATGTACA+AGG + chr4_3:34965695-34965714 None:intergenic 20.0%
!!! CAAAACATGTTGATTATATT+CGG + chr4_3:34965828-34965847 None:intergenic 20.0%
!!! AATATAATCAACATGTTTTG+TGG - chr4_3:34965828-34965847 Msa0639300:intron 20.0%
!!! TTTTGCTTATAAACAAGATT+AGG + chr4_3:34966449-34966468 None:intergenic 20.0%
!! AAATGCAAAAATAACTTGAA+TGG - chr4_3:34966487-34966506 Msa0639300:intron 20.0%
!!! TGATAACTTTGTTTTTTACA+AGG - chr4_3:34966556-34966575 Msa0639300:intron 20.0%
!! TATCACAAAATTGAAAAAAG+GGG + chr4_3:34967216-34967235 None:intergenic 20.0%
!!! TTTATTTTTTTTATGTGGGG+TGG - chr4_3:34963543-34963562 Msa0639300:CDS 25.0%
! GTAAATAGCAATTGATAGAT+TGG - chr4_3:34963880-34963899 Msa0639300:CDS 25.0%
! CAAAATCCAAAACACAAAAA+AGG + chr4_3:34963993-34964012 None:intergenic 25.0%
!!! TTTTGGATTTTGTTGATTTG+TGG - chr4_3:34964001-34964020 Msa0639300:intron 25.0%
!!! TTTGGATTTTGTTGATTTGT+GGG - chr4_3:34964002-34964021 Msa0639300:intron 25.0%
! GCATGATTAAAACTACATTA+TGG - chr4_3:34964110-34964129 Msa0639300:intron 25.0%
!! CAAGTTGAATTTGTAATGTT+GGG - chr4_3:34964217-34964236 Msa0639300:intron 25.0%
!!! TACTTTTTTTGTTAGTATCC+AGG - chr4_3:34964582-34964601 Msa0639300:intron 25.0%
! ATCTCAAATGAAAACATATG+GGG + chr4_3:34964702-34964721 None:intergenic 25.0%
! CATCTCAAATGAAAACATAT+GGG + chr4_3:34964703-34964722 None:intergenic 25.0%
! GATAATTGTGAAGGTAATAA+TGG - chr4_3:34964914-34964933 Msa0639300:intron 25.0%
!! AAAATTCTCTTTTGTTCAAC+TGG + chr4_3:34964947-34964966 None:intergenic 25.0%
!! GAACAAAAGAGAATTTTCTT+TGG - chr4_3:34964950-34964969 Msa0639300:intron 25.0%
!!! ATGTTCTTACACTTGTTTTA+TGG - chr4_3:34965433-34965452 Msa0639300:CDS 25.0%
!!! TCACTTTTCAGTTAGATAAA+AGG + chr4_3:34965805-34965824 None:intergenic 25.0%
!!! GTCATTTTACAAGTTAATTG+CGG - chr4_3:34965897-34965916 Msa0639300:intron 25.0%
!! GGCTTTACTGATTATAATAT+TGG - chr4_3:34965932-34965951 Msa0639300:intron 25.0%
! TACCTAACTGTAAAATTACT+AGG + chr4_3:34965963-34965982 None:intergenic 25.0%
! TTAGGTAATAGACTTTATCA+TGG - chr4_3:34965976-34965995 Msa0639300:intron 25.0%
! TATAAAGTGCACAAGATAAA+AGG + chr4_3:34966030-34966049 None:intergenic 25.0%
!!! AATTTTGATATGTCTGGATT+TGG - chr4_3:34966404-34966423 Msa0639300:intron 25.0%
!!! ATTTTGATATGTCTGGATTT+GGG - chr4_3:34966405-34966424 Msa0639300:intron 25.0%
! GATTCAAACAAGAAATATAG+AGG - chr4_3:34967094-34967113 Msa0639300:intron 25.0%
!! GTGATATTTGTCTAATTTTG+TGG - chr4_3:34967230-34967249 Msa0639300:CDS 25.0%
! TTATATAACATTGGCCAATT+AGG - chr4_3:34967518-34967537 Msa0639300:five_prime_UTR 25.0%
! TATATAACATTGGCCAATTA+GGG - chr4_3:34967519-34967538 Msa0639300:five_prime_UTR 25.0%
! AGAGAGAAGAAAAATGGTTT+TGG + chr4_3:34963025-34963044 None:intergenic 30.0%
! ATCTATGTGTTTTCTTTCAC+AGG - chr4_3:34963103-34963122 Msa0639300:three_prime_UTR 30.0%
! TGTTTTCTTTCACAGGTTAT+TGG - chr4_3:34963110-34963129 Msa0639300:three_prime_UTR 30.0%
GAATCTTTAGCCAAATTGTT+TGG - chr4_3:34963153-34963172 Msa0639300:three_prime_UTR 30.0%
ATCAAAAGCTCCAAACAATT+TGG + chr4_3:34963166-34963185 None:intergenic 30.0%
TTATGTAGGTATACTTGTGA+AGG - chr4_3:34963569-34963588 Msa0639300:CDS 30.0%
TATGTAGGTATACTTGTGAA+GGG - chr4_3:34963570-34963589 Msa0639300:CDS 30.0%
!! CTATCAATTGCTATTTACGT+AGG + chr4_3:34963878-34963897 None:intergenic 30.0%
! TTTTGATGTTATGTGTGCAA+AGG - chr4_3:34963965-34963984 Msa0639300:intron 30.0%
TTTGATGTTATGTGTGCAAA+GGG - chr4_3:34963966-34963985 Msa0639300:intron 30.0%
! TCTATTCACTGTCATTTCAT+TGG - chr4_3:34964061-34964080 Msa0639300:intron 30.0%
GAAACTGTATCATCTGATTT+GGG - chr4_3:34964083-34964102 Msa0639300:intron 30.0%
! AACTACATTATGGTTCTGTT+CGG - chr4_3:34964120-34964139 Msa0639300:intron 30.0%
! GTTGATAAACTAGCTTATAG+CGG - chr4_3:34964163-34964182 Msa0639300:intron 30.0%
! GCAAGTTGAATTTGTAATGT+TGG - chr4_3:34964216-34964235 Msa0639300:intron 30.0%
ATAATAGGGGTAAAATTGAG+AGG - chr4_3:34964324-34964343 Msa0639300:intron 30.0%
TAATAGGGGTAAAATTGAGA+GGG - chr4_3:34964325-34964344 Msa0639300:intron 30.0%
TCATACAAGCAAAATAGATC+TGG + chr4_3:34964446-34964465 None:intergenic 30.0%
! AATTTTGTCTTGCTAAACAG+AGG - chr4_3:34964501-34964520 Msa0639300:intron 30.0%
AAAATTAACCTGCAAAATCC+TGG + chr4_3:34964603-34964622 None:intergenic 30.0%
CCATCTCAAATGAAAACATA+TGG + chr4_3:34964704-34964723 None:intergenic 30.0%
! CCATATGTTTTCATTTGAGA+TGG - chr4_3:34964701-34964720 Msa0639300:intron 30.0%
GACTTCAAAAAGGAATTCTA+TGG + chr4_3:34964727-34964746 None:intergenic 30.0%
TAATGCATCTGACTTCAAAA+AGG + chr4_3:34964737-34964756 None:intergenic 30.0%
!! GGAGTATGAGTTTTTCAAAA+AGG + chr4_3:34964794-34964813 None:intergenic 30.0%
GACAAAAGAAAGATACTTGT+TGG + chr4_3:34964815-34964834 None:intergenic 30.0%
! TTCTTTTGTCCATCATTGTT+TGG - chr4_3:34964825-34964844 Msa0639300:intron 30.0%
! TATTGCAATGGATTCTGTTT+AGG - chr4_3:34965259-34965278 Msa0639300:intron 30.0%
!! TGTTTGGAGTAATTTTAAGC+AGG - chr4_3:34965398-34965417 Msa0639300:CDS 30.0%
! AATTTTTCTTCTGATCCGAA+AGG - chr4_3:34965711-34965730 Msa0639300:intron 30.0%
! ATTTTTCCAATCTCAGCAAT+TGG - chr4_3:34965774-34965793 Msa0639300:intron 30.0%
! TTTTACAAGTTAATTGCGGA+AGG - chr4_3:34965901-34965920 Msa0639300:intron 30.0%
TTTACAAGTTAATTGCGGAA+GGG - chr4_3:34965902-34965921 Msa0639300:intron 30.0%
! CACCTAGTAATTTTACAGTT+AGG - chr4_3:34965958-34965977 Msa0639300:intron 30.0%
TAATAGACTTTATCATGGAC+TGG - chr4_3:34965981-34966000 Msa0639300:intron 30.0%
ATTTCCAACTAGTGAGATAT+GGG + chr4_3:34966138-34966157 None:intergenic 30.0%
AATTTCCAACTAGTGAGATA+TGG + chr4_3:34966139-34966158 None:intergenic 30.0%
TGGAAATTAGAACAGACATA+AGG - chr4_3:34966151-34966170 Msa0639300:intron 30.0%
AAGTCAATAGCTGATTGTAT+AGG - chr4_3:34966238-34966257 Msa0639300:intron 30.0%
AAGTCCTCTTAAAGATTTGA+GGG - chr4_3:34966277-34966296 Msa0639300:intron 30.0%
ATATTAGGAAAAGACACAAC+TGG - chr4_3:34966339-34966358 Msa0639300:intron 30.0%
GAAGAAATCAGCTTAAAACA+TGG + chr4_3:34966860-34966879 None:intergenic 30.0%
TTACTGACAATGGTTAAGAT+AGG - chr4_3:34966917-34966936 Msa0639300:intron 30.0%
AAACTTATTTCCTCTGTGTA+AGG + chr4_3:34966944-34966963 None:intergenic 30.0%
TTACACAGAGGAAATAAGTT+TGG - chr4_3:34966943-34966962 Msa0639300:intron 30.0%
CATGGTTATCCTTAAATTCA+AGG + chr4_3:34966985-34967004 None:intergenic 30.0%
TTAAGGATAACCATGTAAAG+TGG - chr4_3:34966990-34967009 Msa0639300:intron 30.0%
GAATGGCGATTATAAGATTA+AGG - chr4_3:34967072-34967091 Msa0639300:intron 30.0%
GAAAATACGTTTAGACTTCA+CGG - chr4_3:34967116-34967135 Msa0639300:intron 30.0%
AAAATACGTTTAGACTTCAC+GGG - chr4_3:34967117-34967136 Msa0639300:intron 30.0%
! ATGAAAACTTTTCACTACAG+AGG - chr4_3:34967174-34967193 Msa0639300:intron 30.0%
! AATTGAAAAAAGGGGCATAT+GGG + chr4_3:34967208-34967227 None:intergenic 30.0%
! AAATTGAAAAAAGGGGCATA+TGG + chr4_3:34967209-34967228 None:intergenic 30.0%
! AGAATACTGATAAAAGCGTA+TGG + chr4_3:34967432-34967451 None:intergenic 30.0%
TCTTTCTTGCATTCTAAGTT+AGG - chr4_3:34967449-34967468 Msa0639300:five_prime_UTR 30.0%
!!! GAGAAGAAAAATGGTTTTGG+TGG + chr4_3:34963022-34963041 None:intergenic 35.0%
ATGAGCAGAGAGAAGAAAAA+TGG + chr4_3:34963031-34963050 None:intergenic 35.0%
GAAAACACATAGATACCACA+TGG + chr4_3:34963097-34963116 None:intergenic 35.0%
TTTGGCTAAAGATTCGACTT+CGG + chr4_3:34963148-34963167 None:intergenic 35.0%
TACGAGCAATTTCTTCTGAA+GGG + chr4_3:34963278-34963297 None:intergenic 35.0%
TTACGAGCAATTTCTTCTGA+AGG + chr4_3:34963279-34963298 None:intergenic 35.0%
AGGATTACTGTTGATACCTT+TGG - chr4_3:34963702-34963721 Msa0639300:CDS 35.0%
GGATTACTGTTGATACCTTT+GGG - chr4_3:34963703-34963722 Msa0639300:CDS 35.0%
AGCATAAGGAACTCATTCAA+GGG - chr4_3:34963745-34963764 Msa0639300:CDS 35.0%
GTTCACTTATATCCCTTTCA+AGG - chr4_3:34963767-34963786 Msa0639300:CDS 35.0%
CATGGTAAATTATGATCACG+AGG - chr4_3:34963836-34963855 Msa0639300:CDS 35.0%
!!! AAGGGACCTTTTTTGTGTTT+TGG - chr4_3:34963984-34964003 Msa0639300:intron 35.0%
GGAAACTGTATCATCTGATT+TGG - chr4_3:34964082-34964101 Msa0639300:intron 35.0%
!! TGTATCATCTGATTTGGGTT+TGG - chr4_3:34964088-34964107 Msa0639300:intron 35.0%
CTTACTCACTATCATCTACA+AGG + chr4_3:34964193-34964212 None:intergenic 35.0%
GGATAGGAAACACATAATTC+CGG + chr4_3:34964549-34964568 None:intergenic 35.0%
GTACAATCAAACAAAGGGAT+AGG + chr4_3:34964565-34964584 None:intergenic 35.0%
ACAAAGTGACCAAACAATGA+TGG + chr4_3:34964837-34964856 None:intergenic 35.0%
! ATTCTCTTTTGTTCAACTGG+AGG + chr4_3:34964944-34964963 None:intergenic 35.0%
! ATTTTCTTTGGTCGTGAAGT+TGG - chr4_3:34964962-34964981 Msa0639300:intron 35.0%
TTGAAAAGCCGTACTTATCT+TGG - chr4_3:34965019-34965038 Msa0639300:intron 35.0%
TGAAAAGCCGTACTTATCTT+GGG - chr4_3:34965020-34965039 Msa0639300:intron 35.0%
! CTAGTTTATGACCCTTTTGT+TGG - chr4_3:34965109-34965128 Msa0639300:CDS 35.0%
GAAAAGGTGAAGAATGAAGA+AGG + chr4_3:34965194-34965213 None:intergenic 35.0%
TAGATCGTGAAAGGATAAGT+TGG + chr4_3:34965241-34965260 None:intergenic 35.0%
AGTCTACTACATCATACAAG+TGG + chr4_3:34965496-34965515 None:intergenic 35.0%
GTATATGTTGCAGTATGGAT+TGG - chr4_3:34965578-34965597 Msa0639300:intron 35.0%
!!! AAATGCCAGTTGGTCTTTTA+AGG - chr4_3:34965601-34965620 Msa0639300:CDS 35.0%
!!! AATGCCAGTTGGTCTTTTAA+GGG - chr4_3:34965602-34965621 Msa0639300:CDS 35.0%
AGTGCACAAGATAAAAGGTA+GGG + chr4_3:34966025-34966044 None:intergenic 35.0%
AAGTGCACAAGATAAAAGGT+AGG + chr4_3:34966026-34966045 None:intergenic 35.0%
!! TATAAGCATCCGCTTTTGTT+CGG - chr4_3:34966046-34966065 Msa0639300:intron 35.0%
ACTAGTGAGATATGGGAATA+AGG + chr4_3:34966131-34966150 None:intergenic 35.0%
TATTCCCATATCTCACTAGT+TGG - chr4_3:34966131-34966150 Msa0639300:intron 35.0%
GCATTATGTTCTATGTCCAT+TGG + chr4_3:34966178-34966197 None:intergenic 35.0%
CAAGTCCTCTTAAAGATTTG+AGG - chr4_3:34966276-34966295 Msa0639300:intron 35.0%
AGTCCTCTTAAAGATTTGAG+GGG - chr4_3:34966278-34966297 Msa0639300:intron 35.0%
AGGTGAGTAGGACTAATATT+AGG - chr4_3:34966324-34966343 Msa0639300:intron 35.0%
ATGGTAGAAATCTTAGTTGC+CGG - chr4_3:34966379-34966398 Msa0639300:intron 35.0%
CCAGACATATCAAAATTTGC+CGG + chr4_3:34966401-34966420 None:intergenic 35.0%
ATAATATGTGACCCTCCTTA+TGG - chr4_3:34966590-34966609 Msa0639300:intron 35.0%
ACACACTCAACTAAACTGTA+AGG + chr4_3:34966725-34966744 None:intergenic 35.0%
TTCTTAGTTCACGATATTGC+AGG - chr4_3:34966891-34966910 Msa0639300:CDS 35.0%
TCTTAGTTCACGATATTGCA+GGG - chr4_3:34966892-34966911 Msa0639300:CDS 35.0%
GATGCAACACCTTGAATTTA+AGG - chr4_3:34966973-34966992 Msa0639300:intron 35.0%
TTGGACATAGAAACATACAC+CGG + chr4_3:34967150-34967169 None:intergenic 35.0%
! GTGTATGTTTCTATGTCCAA+GGG - chr4_3:34967150-34967169 Msa0639300:intron 35.0%
! TGTATGTTTCTATGTCCAAG+GGG - chr4_3:34967151-34967170 Msa0639300:intron 35.0%
ATTCTTACTCTCCTTAGCTT+AGG - chr4_3:34967298-34967317 Msa0639300:CDS 35.0%
! GTTTGAGATAACCTAAGCTA+AGG + chr4_3:34967312-34967331 None:intergenic 35.0%
CTAGCTTAAGAAGTTTGAGA+TGG + chr4_3:34967348-34967367 None:intergenic 35.0%
CAAACTTCTTAAGCTAGCAA+TGG - chr4_3:34967351-34967370 Msa0639300:CDS 35.0%
TGAAAACTGAAGTCCAGTTC+CGG - chr4_3:34962967-34962986 Msa0639300:three_prime_UTR 40.0%
!!! AGGGTTTTGAAACAGGGTTT+AGG - chr4_3:34962992-34963011 Msa0639300:three_prime_UTR 40.0%
GAAGAGACAACAAAACCATG+TGG - chr4_3:34963079-34963098 Msa0639300:three_prime_UTR 40.0%
TTGGCTAAAGATTCGACTTC+GGG + chr4_3:34963147-34963166 None:intergenic 40.0%
CCAAATGGAAAGGAGAATCT+GGG + chr4_3:34963248-34963267 None:intergenic 40.0%
ACCAAATGGAAAGGAGAATC+TGG + chr4_3:34963249-34963268 None:intergenic 40.0%
TGAAGGGAATGTATGAGCTA+TGG - chr4_3:34963586-34963605 Msa0639300:CDS 40.0%
GAAGGGAATGTATGAGCTAT+GGG - chr4_3:34963587-34963606 Msa0639300:CDS 40.0%
AAGGGAATGTATGAGCTATG+GGG - chr4_3:34963588-34963607 Msa0639300:CDS 40.0%
TATGGCAACTTTCTCTCATC+TGG + chr4_3:34963660-34963679 None:intergenic 40.0%
TGAGAGAAAGTTGCCATACT+TGG - chr4_3:34963662-34963681 Msa0639300:CDS 40.0%
! GTGCTGTTAGATTCCAAGTA+TGG + chr4_3:34963678-34963697 None:intergenic 40.0%
TGGAATCTAACAGCACTTTC+AGG - chr4_3:34963682-34963701 Msa0639300:CDS 40.0%
! TACTGTTGATACCTTTGGGA+AGG - chr4_3:34963707-34963726 Msa0639300:CDS 40.0%
GAGACTAATAACCTTCCCAA+AGG + chr4_3:34963721-34963740 None:intergenic 40.0%
! TATTAGTCTCCAGGAGCATA+AGG - chr4_3:34963731-34963750 Msa0639300:CDS 40.0%
GAGCATAAGGAACTCATTCA+AGG - chr4_3:34963744-34963763 Msa0639300:CDS 40.0%
TTAGATTCTTCCTTGAGTGC+AGG - chr4_3:34963920-34963939 Msa0639300:intron 40.0%
TCAATAGTTTCCTGCACTCA+AGG + chr4_3:34963933-34963952 None:intergenic 40.0%
TAGCTTCTATTGAGAGTTGC+CGG - chr4_3:34964527-34964546 Msa0639300:intron 40.0%
! GTTAGTATCCAGGATTTTGC+AGG - chr4_3:34964592-34964611 Msa0639300:intron 40.0%
! TGTTTGGTCACTTTGTTTGC+AGG - chr4_3:34964841-34964860 Msa0639300:intron 40.0%
! GTTTGGTCACTTTGTTTGCA+GGG - chr4_3:34964842-34964861 Msa0639300:intron 40.0%
! TGCGGAGATAGCTTTTCTAA+TGG - chr4_3:34965057-34965076 Msa0639300:intron 40.0%
! TATGACCCTTTTGTTGGAAC+CGG - chr4_3:34965115-34965134 Msa0639300:CDS 40.0%
TACTTCCGGTTCCAACAAAA+GGG + chr4_3:34965123-34965142 None:intergenic 40.0%
ATACTTCCGGTTCCAACAAA+AGG + chr4_3:34965124-34965143 None:intergenic 40.0%
TGCTGCAACAAGAATACTTC+CGG + chr4_3:34965137-34965156 None:intergenic 40.0%
!!! TCATTTTGGAGCAATGACCA+TGG - chr4_3:34965159-34965178 Msa0639300:intron 40.0%
CCATTGCAATAGATCGTGAA+AGG + chr4_3:34965250-34965269 None:intergenic 40.0%
CCTTTCACGATCTATTGCAA+TGG - chr4_3:34965247-34965266 Msa0639300:intron 40.0%
TTACTCCAAACATTACGGTC+AGG + chr4_3:34965390-34965409 None:intergenic 40.0%
TGGCTGTATATGTTGCAGTA+TGG - chr4_3:34965573-34965592 Msa0639300:intron 40.0%
!! TATGGATTGGAAATGCCAGT+TGG - chr4_3:34965591-34965610 Msa0639300:CDS 40.0%
AAATTTACCTCTTTCAGCCC+CGG + chr4_3:34965654-34965673 None:intergenic 40.0%
GCAAAACCAATTGCTGAGAT+TGG + chr4_3:34965783-34965802 None:intergenic 40.0%
GTGGTTTATTACCTCCCTTT+CGG - chr4_3:34965847-34965866 Msa0639300:intron 40.0%
CAGCAACACAATTACCGAAA+GGG + chr4_3:34965864-34965883 None:intergenic 40.0%
TCAGCAACACAATTACCGAA+AGG + chr4_3:34965865-34965884 None:intergenic 40.0%
TAATTGCGGAAGGGATAGAT+TGG - chr4_3:34965911-34965930 Msa0639300:intron 40.0%
ATAAAAGGTAGGGTAGGACT+TGG + chr4_3:34966015-34966034 None:intergenic 40.0%
CACAAGATAAAAGGTAGGGT+AGG + chr4_3:34966021-34966040 None:intergenic 40.0%
TACTATGCACCGAACAAAAG+CGG + chr4_3:34966058-34966077 None:intergenic 40.0%
GTTAAGCAATCTCCTTAGAC+AGG + chr4_3:34966095-34966114 None:intergenic 40.0%
TGAGATATGGGAATAAGGCT+TGG + chr4_3:34966126-34966145 None:intergenic 40.0%
AGAACAGACATAAGGTCCAA+TGG - chr4_3:34966159-34966178 Msa0639300:intron 40.0%
TCTCCCCTCAAATCTTTAAG+AGG + chr4_3:34966284-34966303 None:intergenic 40.0%
TCTTAAAGATTTGAGGGGAG+AGG - chr4_3:34966283-34966302 Msa0639300:intron 40.0%
!! CCGGCAAATTTTGATATGTC+TGG - chr4_3:34966398-34966417 Msa0639300:intron 40.0%
GACTCTTCTTCTCTCAATAC+AGG + chr4_3:34966812-34966831 None:intergenic 40.0%
GTCTCCACATAATCATTTCC+CGG - chr4_3:34966829-34966848 Msa0639300:CDS 40.0%
AGCTTAAAACATGGATGCTC+CGG + chr4_3:34966851-34966870 None:intergenic 40.0%
! TTGCAGGGTATTACTGACAA+TGG - chr4_3:34966907-34966926 Msa0639300:CDS 40.0%
TAAGATAGGTCCTTACACAG+AGG - chr4_3:34966931-34966950 Msa0639300:intron 40.0%
AGGAAATAAGTTTGGCAGCT+AGG - chr4_3:34966951-34966970 Msa0639300:intron 40.0%
! CATCTTCTAGCCACTTTACA+TGG + chr4_3:34967003-34967022 None:intergenic 40.0%
CATGTAAAGTGGCTAGAAGA+TGG - chr4_3:34967001-34967020 Msa0639300:intron 40.0%
GATGCTCAGTTAAAGGAGAA+TGG - chr4_3:34967055-34967074 Msa0639300:intron 40.0%
! GGTGTATGTTTCTATGTCCA+AGG - chr4_3:34967149-34967168 Msa0639300:intron 40.0%
! GTGAAAAGTTTTCATCCCCT+TGG + chr4_3:34967169-34967188 None:intergenic 40.0%
AGCTTAGGTTATCTCAAACC+TGG - chr4_3:34967313-34967332 Msa0639300:CDS 40.0%
TTAGGTTATCTCAAACCTGG+TGG - chr4_3:34967316-34967335 Msa0639300:CDS 40.0%
TTAAGCTAGCAATGGTAGCT+CGG - chr4_3:34967359-34967378 Msa0639300:CDS 40.0%
! AAGTTAGGCACTGTTGTTGA+AGG - chr4_3:34967464-34967483 Msa0639300:five_prime_UTR 40.0%
! AGTTAGGCACTGTTGTTGAA+GGG - chr4_3:34967465-34967484 Msa0639300:five_prime_UTR 40.0%
!! AATCTGGGTGATGATGGAGA+GGG + chr4_3:34963233-34963252 None:intergenic 45.0%
AAGGAGAATCTGGGTGATGA+TGG + chr4_3:34963239-34963258 None:intergenic 45.0%
CCCAGATTCTCCTTTCCATT+TGG - chr4_3:34963245-34963264 Msa0639300:three_prime_UTR 45.0%
GGGAGATTGACCAAATGGAA+AGG + chr4_3:34963258-34963277 None:intergenic 45.0%
CTGAAGGGAGATTGACCAAA+TGG + chr4_3:34963263-34963282 None:intergenic 45.0%
ATGTGGGGTGGCAATTATGT+AGG - chr4_3:34963555-34963574 Msa0639300:CDS 45.0%
ATGTATGAGCTATGGGGTGA+AGG - chr4_3:34963594-34963613 Msa0639300:CDS 45.0%
TGTATGAGCTATGGGGTGAA+GGG - chr4_3:34963595-34963614 Msa0639300:CDS 45.0%
! TGGGAAGGTTATTAGTCTCC+AGG - chr4_3:34963722-34963741 Msa0639300:CDS 45.0%
GAATGAGTTCCTTATGCTCC+TGG + chr4_3:34963743-34963762 None:intergenic 45.0%
AAGGACACGCAACCTTGAAA+GGG + chr4_3:34963782-34963801 None:intergenic 45.0%
AAAGGACACGCAACCTTGAA+AGG + chr4_3:34963783-34963802 None:intergenic 45.0%
GAAAACCAGAGCACAACTTC+TGG - chr4_3:34964879-34964898 Msa0639300:CDS 45.0%
! CGGCTTTTCAACTCGTATGT+CGG + chr4_3:34965010-34965029 None:intergenic 45.0%
CTGTTGGCCCAAGATAAGTA+CGG + chr4_3:34965030-34965049 None:intergenic 45.0%
AAAAGCTATCTCCGCATCCA+TGG + chr4_3:34965053-34965072 None:intergenic 45.0%
! GGGTCATAAACTAGTTTCCC+CGG + chr4_3:34965103-34965122 None:intergenic 45.0%
! CTTGTTGCAGCAGCTCATTT+TGG - chr4_3:34965145-34965164 Msa0639300:CDS 45.0%
!! AGGGTGCTGACATTGACATT+AGG - chr4_3:34965343-34965362 Msa0639300:CDS 45.0%
!! GGGTGCTGACATTGACATTA+GGG - chr4_3:34965344-34965363 Msa0639300:CDS 45.0%
GACATTAGGGTAGTACGTGA+TGG - chr4_3:34965357-34965376 Msa0639300:CDS 45.0%
TCAGCCCTTAAAAGACCAAC+TGG + chr4_3:34965609-34965628 None:intergenic 45.0%
GCACATAGATGCTCTCCTTT+CGG + chr4_3:34965729-34965748 None:intergenic 45.0%
AGCATCTATGTGCTGTGTCT+TGG - chr4_3:34965736-34965755 Msa0639300:intron 45.0%
CAACACAATTACCGAAAGGG+AGG + chr4_3:34965861-34965880 None:intergenic 45.0%
!! GGTAATTGTGTTGCTGACTC+TGG - chr4_3:34965868-34965887 Msa0639300:intron 45.0%
!! TGAGTGCTGAATCCTGTCTA+AGG - chr4_3:34966080-34966099 Msa0639300:intron 45.0%
GGACATTAGTATGAGCTCTG+AGG - chr4_3:34966304-34966323 Msa0639300:intron 45.0%
TGGTGGTAGGAAGCTACTAA+AGG - chr4_3:34966637-34966656 Msa0639300:intron 45.0%
GGTGGTAGGAAGCTACTAAA+GGG - chr4_3:34966638-34966657 Msa0639300:intron 45.0%
GTGGTAGGAAGCTACTAAAG+GGG - chr4_3:34966639-34966658 Msa0639300:intron 45.0%
TGGTAGGAAGCTACTAAAGG+GGG - chr4_3:34966640-34966659 Msa0639300:intron 45.0%
TGTGGAGCCTTACATTGTTC+CGG - chr4_3:34966664-34966683 Msa0639300:intron 45.0%
TTGTCGTCCGGAACAATGTA+AGG + chr4_3:34966674-34966693 None:intergenic 45.0%
! TGGTCTGTTCTTTTGTCGTC+CGG + chr4_3:34966686-34966705 None:intergenic 45.0%
AAACTGTAAGGTGCAGTCGA+TGG + chr4_3:34966713-34966732 None:intergenic 45.0%
TGCTGCCAAGATGCTTGTAT+TGG - chr4_3:34966763-34966782 Msa0639300:CDS 45.0%
GCTGCCAAGATGCTTGTATT+GGG - chr4_3:34966764-34966783 Msa0639300:CDS 45.0%
TGCTCCGGGAAATGATTATG+TGG + chr4_3:34966836-34966855 None:intergenic 45.0%
GCTTAAAACATGGATGCTCC+GGG + chr4_3:34966850-34966869 None:intergenic 45.0%
! TTCTGCAGTTTTCAGTCCAG+TGG - chr4_3:34967033-34967052 Msa0639300:intron 45.0%
TCCAGTGGATGCTCAGTTAA+AGG - chr4_3:34967048-34967067 Msa0639300:intron 45.0%
TCCTTTAACTGAGCATCCAC+TGG + chr4_3:34967052-34967071 None:intergenic 45.0%
TTGAGATGGTAATCACCACC+AGG + chr4_3:34967334-34967353 None:intergenic 45.0%
!!! AATTTTTTAATTTTTTATAG+TGG - chr4_3:34963507-34963526 Msa0639300:CDS 5.0%
!!! ATTTTTTAATTTTTTATAGT+GGG - chr4_3:34963508-34963527 Msa0639300:CDS 5.0%
!!! AAAATTTTATTTTTTTTATG+TGG - chr4_3:34963538-34963557 Msa0639300:CDS 5.0%
!!! AAATTTTATTTTTTTTATGT+GGG - chr4_3:34963539-34963558 Msa0639300:CDS 5.0%
ACGTTCATCCCCAGTTGCAA+TGG - chr4_3:34963202-34963221 Msa0639300:three_prime_UTR 50.0%
AGGGAGCTTCCATTGCAACT+GGG + chr4_3:34963214-34963233 None:intergenic 50.0%
!! GAATCTGGGTGATGATGGAG+AGG + chr4_3:34963234-34963253 None:intergenic 50.0%
GTATGAGCTATGGGGTGAAG+GGG - chr4_3:34963596-34963615 Msa0639300:CDS 50.0%
TATGAGCTATGGGGTGAAGG+GGG - chr4_3:34963597-34963616 Msa0639300:CDS 50.0%
GGGTAGCTATGAGGAGTTGA+AGG - chr4_3:34963617-34963636 Msa0639300:CDS 50.0%
! TTGCATTGGTGCTCTCTGCA+TGG - chr4_3:34963818-34963837 Msa0639300:CDS 50.0%
GGGGAATAAGAGATGCACAC+AGG + chr4_3:34964683-34964702 None:intergenic 50.0%
ATCAGCCAGAAGTTGTGCTC+TGG + chr4_3:34964887-34964906 None:intergenic 50.0%
!! GTGAAGTTGGTGCTGCTGAT+AGG - chr4_3:34964975-34964994 Msa0639300:intron 50.0%
TTATCTTGGGCCAACAGCCA+TGG - chr4_3:34965033-34965052 Msa0639300:intron 50.0%
TCTAATGGCCAACCAAGCAC+TGG - chr4_3:34965072-34965091 Msa0639300:intron 50.0%
GAAGAAGGAGAAGCAGACCA+TGG + chr4_3:34965179-34965198 None:intergenic 50.0%
!! GTATGAGCTCTGAGGTGAGT+AGG - chr4_3:34966312-34966331 Msa0639300:intron 50.0%
AAGGTGCAGTCGATGGTATG+TGG + chr4_3:34966706-34966725 None:intergenic 50.0%
GCCAAGATGCTTGTATTGGG+CGG - chr4_3:34966767-34966786 Msa0639300:CDS 50.0%
TCCGCCCAATACAAGCATCT+TGG + chr4_3:34966771-34966790 None:intergenic 50.0%
!! AGACTTCACGGGTTAGATGC+CGG - chr4_3:34967128-34967147 Msa0639300:intron 50.0%
! AAAGGGGCATATGGGTACAC+TGG + chr4_3:34967200-34967219 None:intergenic 50.0%
GGGCAGCACTTGTGTACAAT+TGG - chr4_3:34967485-34967504 Msa0639300:five_prime_UTR 50.0%
TTCAAAACCCTCGCCGGAAC+TGG + chr4_3:34962983-34963002 None:intergenic 55.0%
!!! TCCGGCGAGGGTTTTGAAAC+AGG - chr4_3:34962985-34963004 Msa0639300:three_prime_UTR 55.0%
CCCTGTTTCAAAACCCTCGC+CGG + chr4_3:34962989-34963008 None:intergenic 55.0%
!!! CCGGCGAGGGTTTTGAAACA+GGG - chr4_3:34962986-34963005 Msa0639300:three_prime_UTR 55.0%
! GGGGATGAACGTCGTCGTTT+TGG + chr4_3:34963194-34963213 None:intergenic 55.0%
GGGAGCTTCCATTGCAACTG+GGG + chr4_3:34963213-34963232 None:intergenic 55.0%
GAGGGAGCTTCCATTGCAAC+TGG + chr4_3:34963215-34963234 None:intergenic 55.0%
ATCTCCGCATCCATGGCTGT+TGG + chr4_3:34965046-34965065 None:intergenic 55.0%
!! CAACCAAGCACTGGCTACTC+CGG - chr4_3:34965081-34965100 Msa0639300:intron 55.0%
!! AACCAAGCACTGGCTACTCC+GGG - chr4_3:34965082-34965101 Msa0639300:intron 55.0%
!! AGGGTAGTACGTGATGGACG+CGG - chr4_3:34965363-34965382 Msa0639300:CDS 55.0%
GCGGTCCTGACCGTAATGTT+TGG - chr4_3:34965382-34965401 Msa0639300:CDS 55.0%
CTGACAACAACCTTCCTCCC+TGG - chr4_3:34965625-34965644 Msa0639300:CDS 55.0%
ACCACCAGATTTGCGTCCTC+CGG + chr4_3:34966624-34966643 None:intergenic 55.0%
GAGGACGCAAATCTGGTGGT+AGG - chr4_3:34966624-34966643 Msa0639300:intron 55.0%
GAAGCTACTAAAGGGGGCTG+TGG - chr4_3:34966646-34966665 Msa0639300:intron 55.0%
ACTGAAGTCCAGTTCCGGCG+AGG - chr4_3:34962972-34962991 Msa0639300:three_prime_UTR 60.0%
CTGAAGTCCAGTTCCGGCGA+GGG - chr4_3:34962973-34962992 Msa0639300:three_prime_UTR 60.0%
GGGTGAAGGGGGTAGCTATG+AGG - chr4_3:34963608-34963627 Msa0639300:CDS 60.0%
TGGGCCAACAGCCATGGATG+CGG - chr4_3:34965039-34965058 Msa0639300:intron 60.0%
CGGAGTAGCCAGTGCTTGGT+TGG + chr4_3:34965083-34965102 None:intergenic 60.0%
!! ACCAAGCACTGGCTACTCCG+GGG - chr4_3:34965083-34965102 Msa0639300:intron 60.0%
CGGCTCGCACTCCATAAGGA+GGG + chr4_3:34966604-34966623 None:intergenic 60.0%
CCTCCTTATGGAGTGCGAGC+CGG - chr4_3:34966602-34966621 Msa0639300:intron 60.0%
TCCCCGGAGTAGCCAGTGCT+TGG + chr4_3:34965087-34965106 None:intergenic 65.0%
CAACCTTCCTCCCTGGCGTC+CGG - chr4_3:34965632-34965651 Msa0639300:intron 65.0%
AACCTTCCTCCCTGGCGTCC+GGG - chr4_3:34965633-34965652 Msa0639300:intron 65.0%
TCTTTCAGCCCCGGACGCCA+GGG + chr4_3:34965645-34965664 None:intergenic 65.0%
! CCGGCTCGCACTCCATAAGG+AGG + chr4_3:34966605-34966624 None:intergenic 65.0%
! CCTCCGGCTCGCACTCCATA+AGG + chr4_3:34966608-34966627 None:intergenic 65.0%
CCTTATGGAGTGCGAGCCGG+AGG - chr4_3:34966605-34966624 Msa0639300:intron 65.0%
CGAGCCGGAGGACGCAAATC+TGG - chr4_3:34966617-34966636 Msa0639300:intron 65.0%
GCCGGAGGACGCAAATCTGG+TGG - chr4_3:34966620-34966639 Msa0639300:intron 65.0%
ACCTTCCTCCCTGGCGTCCG+GGG - chr4_3:34965634-34965653 Msa0639300:intron 70.0%
CTCTTTCAGCCCCGGACGCC+AGG + chr4_3:34965646-34965665 None:intergenic 70.0%
CTGGCGTCCGGGGCTGAAAG+AGG - chr4_3:34965644-34965663 Msa0639300:intron 70.0%
TTCAGCCCCGGACGCCAGGG+AGG + chr4_3:34965642-34965661 None:intergenic 75.0%
! GCCCCGGACGCCAGGGAGGA+AGG + chr4_3:34965638-34965657 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 34962966 34967546 34962966 ID=Msa0639300;Name=Msa0639300
chr4_3 mRNA 34962966 34967546 34962966 ID=Msa0639300-mRNA-1;Parent=Msa0639300;Name=Msa0639300-mRNA-1;_AED=0.02;_eAED=0.02;_QI=130|0.83|0.71|1|0.83|0.71|7|417|475
chr4_3 exon 34962966 34963934 34962966 ID=Msa0639300-mRNA-1:exon:8211;Parent=Msa0639300-mRNA-1
chr4_3 exon 34964847 34964921 34964847 ID=Msa0639300-mRNA-1:exon:8210;Parent=Msa0639300-mRNA-1
chr4_3 exon 34965093 34965167 34965093 ID=Msa0639300-mRNA-1:exon:8209;Parent=Msa0639300-mRNA-1
chr4_3 exon 34965332 34965564 34965332 ID=Msa0639300-mRNA-1:exon:8208;Parent=Msa0639300-mRNA-1
chr4_3 exon 34965586 34965649 34965586 ID=Msa0639300-mRNA-1:exon:8207;Parent=Msa0639300-mRNA-1
chr4_3 exon 34966724 34966935 34966724 ID=Msa0639300-mRNA-1:exon:8206;Parent=Msa0639300-mRNA-1
chr4_3 exon 34967200 34967546 34967200 ID=Msa0639300-mRNA-1:exon:8205;Parent=Msa0639300-mRNA-1
chr4_3 five_prime_UTR 34967417 34967546 34967417 ID=Msa0639300-mRNA-1:five_prime_utr;Parent=Msa0639300-mRNA-1
chr4_3 CDS 34967200 34967416 34967200 ID=Msa0639300-mRNA-1:cds;Parent=Msa0639300-mRNA-1
chr4_3 CDS 34966724 34966935 34966724 ID=Msa0639300-mRNA-1:cds;Parent=Msa0639300-mRNA-1
chr4_3 CDS 34965586 34965649 34965586 ID=Msa0639300-mRNA-1:cds;Parent=Msa0639300-mRNA-1
chr4_3 CDS 34965332 34965564 34965332 ID=Msa0639300-mRNA-1:cds;Parent=Msa0639300-mRNA-1
chr4_3 CDS 34965093 34965167 34965093 ID=Msa0639300-mRNA-1:cds;Parent=Msa0639300-mRNA-1
chr4_3 CDS 34964847 34964921 34964847 ID=Msa0639300-mRNA-1:cds;Parent=Msa0639300-mRNA-1
chr4_3 CDS 34963383 34963934 34963383 ID=Msa0639300-mRNA-1:cds;Parent=Msa0639300-mRNA-1
chr4_3 three_prime_UTR 34962966 34963382 34962966 ID=Msa0639300-mRNA-1:three_prime_utr;Parent=Msa0639300-mRNA-1
Gene Sequence

>Msa0639300

ATGTGGTATCTATGTGTTTTCTTTCACAGGTTATTGGATTACAGAAAACCCGAAGTCGAATCTTTAGCCAAATTGTTTGGAGCTTTTGATGACAACCAAAACGACGACGTTCATCCCCAGTTGCAATGGAAGCTCCCTCTCCATCATCACCCAGATTCTCCTTTCCATTTGGTCAATCTCCCTTCAGAAGAAATTGCTCGTAACATTGCTAATCGAAGTATACTTGTGAAGGGAATGTATGAGCTATGGGGTGAAGGGGGTAGCTATGAGGAGTTGAAGGATTCTATATTGAGTTATCCAGATGAGAGAAAGTTGCCATACTTGGAATCTAACAGCACTTTCAGGATTACTGTTGATACCTTTGGGAAGGTTATTAGTCTCCAGGAGCATAAGGAACTCATTCAAGGGTTCACTTATATCCCTTTCAAGGGAAAAGTAAATTTGAGAAAACCAGAGCACAACTTCTGGCTGATAGAAATTGATAATTGTGAAGTTGAACAAAAGAGAATTTTCTTTGGTCGTGAAGTTGGTGCTGCTGATAGGAAGCTTTTACCGACATACGAGTTGAAAAGCCGTACTTATCTTGGGCCAACAGCCATGGATGCGGAGATAGCTTTTCTAATGGCCAACCAAGCACTGGCTACTCCGGGGAAACTAGTTTATGACCCTTTTGTTGGAACCGGAAGTATTCTTGTTGCAGCAGCTCATTTTGGAGCAATGACCATGGGTGCTGACATTGACATTAGGGTAGTACGTGATGGACGCGGTCCTGACCGTAATGTTTGGAGTAATTTTAAGCAGTATGGATTGGAAATGCCAGTTGGTCTTTTAAGGGCTGACAACAACCTTCCTCCCTGGCGTCCGGGGCTGAAAGAGGTATTTGATGCGATAATATGTGACCCTCCTTATGGAGTGCGAGCCGGAGGACGCAAATCTGGTGGTAGGAAGCTACTAAAGGGGGCTGTGGAGCCTTACATTGTTCCGGACGACAAAAGAACAGACCACATACCATCGACTGCACCTTACAGTTTAGTTGAGTGTGTACATGATTTGCTTGATCTTGCTGCCAAGATGCTTGTATTGGGCGGAAGACTTGTGTTTTTCTATCCTGTATTGAGAGAAGAAGAGTCTCCACATAATCATTTCCCGGAGCATCCATGTTTTAAGCTGATTTCTTCTTCTGAGCAGATTCTTAGTTCACGATATTGCAGGGTATTACTGACAATGGTTAAGATAGGTCCTTACACAGAGGAAATAAGTTTGGCAGCTAGGATGCAACACCTTGAATTTAAGGATAACCATGTAAAGTGGCTAGAAGATGGTAATCTTCATTCTGCAGTTTTCAGTCCAGTGGATGCTCAGTTAAAGGAGAATGGCGATTATAAGATTAAGGATTCAAACAAGAAATATAGAGGAAAATACGTTTAG

Protein sequence

>Msa0639300

MWYLCVFFHRLLDYRKPEVESLAKLFGAFDDNQNDDVHPQLQWKLPLHHHPDSPFHLVNLPSEEIARNIANRSILVKGMYELWGEGGSYEELKDSILSYPDERKLPYLESNSTFRITVDTFGKVISLQEHKELIQGFTYIPFKGKVNLRKPEHNFWLIEIDNCEVEQKRIFFGREVGAADRKLLPTYELKSRTYLGPTAMDAEIAFLMANQALATPGKLVYDPFVGTGSILVAAAHFGAMTMGADIDIRVVRDGRGPDRNVWSNFKQYGLEMPVGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGAVEPYIVPDDKRTDHIPSTAPYSLVECVHDLLDLAAKMLVLGGRLVFFYPVLREEESPHNHFPEHPCFKLISSSEQILSSRYCRVLLTMVKIGPYTEEISLAARMQHLEFKDNHVKWLEDGNLHSAVFSPVDAQLKENGDYKIKDSNKKYRGKYV*