AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0614640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0614640 MtrunA17_Chr4g0050761 97.059 374 4 1 1 367 1 374 0.0 743
Msa0614640 MtrunA17_Chr4g0050751 95.522 67 3 0 409 475 1 67 3.33e-39 136
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0614640 AT3G26410.1 72.614 482 120 3 1 475 1 477 0.0 734

Find 167 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAATAACATTGGCCAATT+AGG 0.090321 4_2:-63729529 Msa0614640:three_prime_UTR
TTCTCATTTATTTAATTTAA+TGG 0.100569 4_2:-63729774 Msa0614640:three_prime_UTR
GATGCAACACCTTGAATTTA+AGG 0.147556 4_2:-63730069 Msa0614640:CDS
TGGAATCTAACAGCACTTTC+AGG 0.261458 4_2:-63733336 Msa0614640:CDS
ATCAAAAGCTCCAAACAATT+TGG 0.282090 4_2:+63733854 None:intergenic
GAATGGCGATTATAAGATTA+AGG 0.285901 4_2:-63729970 Msa0614640:CDS
TTAATAACATTGGCCAATTA+GGG 0.287834 4_2:-63729528 Msa0614640:three_prime_UTR
CTTGTTGCAGCAGCTCATTT+TGG 0.299821 4_2:-63731906 Msa0614640:CDS
TCCAGTGGATGCTCAGTTAA+AGG 0.304687 4_2:-63729994 Msa0614640:CDS
AGGATTACTGTTGATACCTT+TGG 0.304749 4_2:-63733316 Msa0614640:CDS
CTCTTTCAGCCCCGGACGCC+AGG 0.306574 4_2:+63731401 None:intergenic
GGGGATGAACGTCGTCGTTT+TGG 0.306689 4_2:+63733826 None:intergenic
GTGTGCCACGTGGCCCTAAT+TGG 0.308588 4_2:+63729515 None:intergenic
TCTTTCTTGCATTCTAAGTT+AGG 0.325262 4_2:-63729591 Msa0614640:three_prime_UTR
ACCAAATGGAAAGGAGAATC+TGG 0.336337 4_2:+63733771 None:intergenic
TTGGCTAAAGATTCGACTTC+GGG 0.336501 4_2:+63733873 None:intergenic
TTGAAAAGCCGTACTTATCT+TGG 0.337225 4_2:-63732032 Msa0614640:CDS
ATAATATGTGACCCTCCTTA+TGG 0.341218 4_2:-63730452 Msa0614640:CDS
AGCTTAAAACATGGATGCTC+CGG 0.349016 4_2:+63730194 None:intergenic
AACCTTCCTCCCTGGCGTCC+GGG 0.349511 4_2:-63731411 Msa0614640:CDS
TTCTTAGTTCACGATATTGC+AGG 0.351630 4_2:-63730151 Msa0614640:CDS
CAACCTTCCTCCCTGGCGTC+CGG 0.354356 4_2:-63731412 Msa0614640:CDS
CCCAGATTCTCCTTTCCATT+TGG 0.355570 4_2:-63733772 Msa0614640:CDS
GAAAACCAGAGCACAACTTC+TGG 0.364397 4_2:-63732172 Msa0614640:CDS
CATCTTCTAGCCACTTTACA+TGG 0.364435 4_2:+63730042 None:intergenic
CATGGTTCTCCTTAAATTCA+AGG 0.367959 4_2:+63730060 None:intergenic
GAATCTTTAGCCAAATTGTT+TGG 0.372629 4_2:-63733864 Msa0614640:CDS
TTCAAAACCCTCGCCGGAAC+TGG 0.373226 4_2:+63734037 None:intergenic
AGGGTGCTGACATTGACATT+AGG 0.374088 4_2:-63731701 Msa0614640:CDS
TATGGCAACTTTCTCTCATC+TGG 0.376539 4_2:+63733361 None:intergenic
CGAGCCGGAGGACGCAAATC+TGG 0.377832 4_2:-63730425 Msa0614640:CDS
GGGTGCTGACATTGACATTA+GGG 0.379288 4_2:-63731700 Msa0614640:CDS
TAAAATTACTCCAAACATTA+CGG 0.379933 4_2:+63731652 None:intergenic
GCTGCCAAGATGCTTGTATT+GGG 0.380400 4_2:-63730278 Msa0614640:CDS
TGCTGCCAAGATGCTTGTAT+TGG 0.383669 4_2:-63730279 Msa0614640:CDS
GTGCTGTTAGATTCCAAGTA+TGG 0.387116 4_2:+63733343 None:intergenic
GGATTACTGTTGATACCTTT+GGG 0.387647 4_2:-63733315 Msa0614640:CDS
GAGGGAGCTTCCATTGCAAC+TGG 0.392144 4_2:+63733805 None:intergenic
TTACACAGAGGAAATAAGTT+TGG 0.394825 4_2:-63730099 Msa0614640:CDS
TGTGATGCCTTACATTGTTC+CGG 0.406668 4_2:-63730378 Msa0614640:CDS
TTGTCGTCCGGAACAATGTA+AGG 0.409024 4_2:+63730371 None:intergenic
TGTATGAGCTATGGGGTGAA+GGG 0.410913 4_2:-63733423 Msa0614640:CDS
AAACTTATTTCCTCTGTGTA+AGG 0.415891 4_2:+63730101 None:intergenic
GTCTCCACATAATCATTTCC+CGG 0.424080 4_2:-63730213 Msa0614640:CDS
TGCTGCAACAAGAATACTTC+CGG 0.424884 4_2:+63731917 None:intergenic
CAACCAAGCACTGGCTACTC+CGG 0.428014 4_2:-63731970 Msa0614640:CDS
ATACTTCCGGTTCCAACAAA+AGG 0.429546 4_2:+63731930 None:intergenic
GCGGTCCTGACCGTAATGTT+TGG 0.431493 4_2:-63731662 Msa0614640:CDS
AGGAAATAAGTTTGGCAGCT+AGG 0.434880 4_2:-63730091 Msa0614640:CDS
ATGTATGAGCTATGGGGTGA+AGG 0.439043 4_2:-63733424 Msa0614640:CDS
GTTTACTTATATCCCTTTCA+AGG 0.440303 4_2:-63733251 Msa0614640:intron
AAGTTAGGCACTGTTGTTGA+AGG 0.440982 4_2:-63729576 Msa0614640:three_prime_UTR
GGTGGTAGGAAGCTACTAAA+GGG 0.441482 4_2:-63730404 Msa0614640:CDS
AACCAAGCACTGGCTACTCC+GGG 0.444181 4_2:-63731969 Msa0614640:CDS
GGGCAGCACTTGTGTACAAT+TGG 0.445895 4_2:-63729555 Msa0614640:three_prime_UTR
TCCTTTAACTGAGCATCCAC+TGG 0.446225 4_2:+63729993 None:intergenic
ATTCTTACTCTCCTTAGCTT+AGG 0.446241 4_2:-63729742 Msa0614640:three_prime_UTR
TGAGAGAAAGTTGCCATACT+TGG 0.448763 4_2:-63733356 Msa0614640:CDS
CTGAAGGGAGATTGACCAAA+TGG 0.448856 4_2:+63733757 None:intergenic
GAATGAGTTCCTTATGCTCC+TGG 0.450036 4_2:+63733278 None:intergenic
GTGAAGTTGGTGCTGCTGAT+AGG 0.451208 4_2:-63732076 Msa0614640:CDS
GGGTAGCTATGAGGAGTTGA+AGG 0.451262 4_2:-63733401 Msa0614640:CDS
ATCAGCCAGAAGTTGTGCTC+TGG 0.451410 4_2:+63732167 None:intergenic
AGAAAACTGAAGTCCAGTTC+CGG 0.451487 4_2:-63734050 Msa0614640:five_prime_UTR
TGGGAAGGTTATTAGTCTCC+AGG 0.454971 4_2:-63733296 Msa0614640:CDS
TCCCCGGAGTAGCCAGTGCT+TGG 0.456610 4_2:+63731967 None:intergenic
GACTCTTCTTCTCTCAATAC+AGG 0.466540 4_2:+63730233 None:intergenic
TGAAAAGCCGTACTTATCTT+GGG 0.468843 4_2:-63732031 Msa0614640:CDS
ACCTTCCTCCCTGGCGTCCG+GGG 0.473468 4_2:-63731410 Msa0614640:CDS
CCTCCGGCTCGCACTCCATA+AGG 0.474138 4_2:+63730437 None:intergenic
TATTAGTCTCCAGGAGCATA+AGG 0.475181 4_2:-63733287 Msa0614640:CDS
AAGGAGAATCTGGGTGATGA+TGG 0.479452 4_2:+63733781 None:intergenic
TCAGCCCTTAAAAGACCAAC+TGG 0.494342 4_2:+63731438 None:intergenic
TTACTGACAATGGTTAAGAT+AGG 0.494959 4_2:-63730125 Msa0614640:CDS
AAAGGACACACAACCTTGAA+AGG 0.497686 4_2:+63733238 None:intergenic
TGGTGGTAGGAAGCTACTAA+AGG 0.498563 4_2:-63730405 Msa0614640:CDS
GAAAATACGTTTAGACTTCA+CGG 0.501307 4_2:-63729926 Msa0614640:exon
CTGGCGTCCGGGGCTGAAAG+AGG 0.505882 4_2:-63731400 Msa0614640:intron
GATTCAAACAAGAAATATAG+AGG 0.507958 4_2:-63729948 Msa0614640:CDS
CGGAGTAGCCAGTGCTTGGT+TGG 0.508374 4_2:+63731971 None:intergenic
TTACGAGCAATTTCTTCTGA+AGG 0.511567 4_2:+63733741 None:intergenic
ACCACCAGATTTGCGTCCTC+CGG 0.513118 4_2:+63730421 None:intergenic
GCCCCGGACGCCAGGGAGGA+AGG 0.514958 4_2:+63731409 None:intergenic
TCTAATGGCCAACCAAGCAC+TGG 0.516528 4_2:-63731979 Msa0614640:CDS
TCCGCCCAATACAAGCATCT+TGG 0.517479 4_2:+63730274 None:intergenic
GAGCATAAGGAACTCATTCA+AGG 0.518919 4_2:-63733274 Msa0614640:CDS
GGTGTATGTTTCTATGTCCA+AGG 0.520697 4_2:-63729893 Msa0614640:three_prime_UTR
CATGTAAAGTGGCTAGAAGA+TGG 0.524567 4_2:-63730041 Msa0614640:CDS
AAAATACGTTTAGACTTCAC+GGG 0.525758 4_2:-63729925 Msa0614640:exon
TACTGTTGATACCTTTGGGA+AGG 0.526326 4_2:-63733311 Msa0614640:CDS
TACGAGCAATTTCTTCTGAA+GGG 0.530624 4_2:+63733742 None:intergenic
CCGGCTCGCACTCCATAAGG+AGG 0.532511 4_2:+63730440 None:intergenic
CCTCCTTATGGAGTGCGAGC+CGG 0.533732 4_2:-63730440 Msa0614640:CDS
TCTTTCAGCCCCGGACGCCA+GGG 0.533800 4_2:+63731402 None:intergenic
GAAGGGAATGTATGAGCTAT+GGG 0.534827 4_2:-63733431 Msa0614640:CDS
TTATCTTGGGCCAACAGCCA+TGG 0.536034 4_2:-63732018 Msa0614640:CDS
ATCTCCGCATCCATGGCTGT+TGG 0.537799 4_2:+63732008 None:intergenic
GGGTCATAAACTAGTTTCCC+CGG 0.538697 4_2:+63731951 None:intergenic
TACTTCCGGTTCCAACAAAA+GGG 0.538775 4_2:+63731931 None:intergenic
CTGAAGTCCAGTTCCGGCGA+GGG 0.538778 4_2:-63734044 Msa0614640:five_prime_UTR
GTATATGTTGCAGTATGGAT+TGG 0.538931 4_2:-63731466 Msa0614640:intron
AGACTTCACGGGTTAGATGC+CGG 0.539961 4_2:-63729914 Msa0614640:three_prime_UTR
ACACACTCAACTAAACTGTA+AGG 0.540832 4_2:+63730320 None:intergenic
CTAGCTTAAGAAGTTTGAGA+TGG 0.541249 4_2:+63729695 None:intergenic
AGCTTAGGTTATCTCAAACC+TGG 0.541879 4_2:-63729727 Msa0614640:three_prime_UTR
CCCTGTTTCAAAACCCTCGC+CGG 0.544375 4_2:+63734031 None:intergenic
GAATCTGGGTGATGATGGAG+AGG 0.548209 4_2:+63733786 None:intergenic
TTAAGCTAGCAATGGTAGCT+CGG 0.549255 4_2:-63729681 Msa0614640:three_prime_UTR
GATGCTCAGTTAAAGGAGAA+TGG 0.551488 4_2:-63729987 Msa0614640:CDS
AAATTTACCTCTTTCAGCCC+CGG 0.552977 4_2:+63731393 None:intergenic
AAGGACACACAACCTTGAAA+GGG 0.553121 4_2:+63733239 None:intergenic
TGAAGGGAATGTATGAGCTA+TGG 0.553852 4_2:-63733432 Msa0614640:CDS
TTTGGCTAAAGATTCGACTT+CGG 0.554968 4_2:+63733872 None:intergenic
TTATGTAGGTATACTTGTGA+AGG 0.555230 4_2:-63733449 Msa0614640:intron
GTGTATGTTTCTATGTCCAA+GGG 0.557871 4_2:-63729892 Msa0614640:three_prime_UTR
ACGTTCATCCCCAGTTGCAA+TGG 0.557926 4_2:-63733815 Msa0614640:CDS
GTATGAGCTATGGGGTGAAG+GGG 0.562156 4_2:-63733422 Msa0614640:CDS
GCTTAAAACATGGATGCTCC+GGG 0.564471 4_2:+63730195 None:intergenic
CTGACAACAACCTTCCTCCC+TGG 0.564474 4_2:-63731419 Msa0614640:CDS
TTACTCCAAACATTACGGTC+AGG 0.565054 4_2:+63731657 None:intergenic
TCTTAGTTCACGATATTGCA+GGG 0.569214 4_2:-63730150 Msa0614640:CDS
AAAAGCTATCTCCGCATCCA+TGG 0.574264 4_2:+63732001 None:intergenic
TTAAGGAGAACCATGTAAAG+TGG 0.575742 4_2:-63730052 Msa0614640:CDS
TGGGCCAACAGCCATGGATG+CGG 0.579242 4_2:-63732012 Msa0614640:CDS
AGAATACTGATAAAAGCGTA+TGG 0.579612 4_2:+63729611 None:intergenic
TATGAGCTATGGGGTGAAGG+GGG 0.582219 4_2:-63733421 Msa0614640:CDS
CCAAATGGAAAGGAGAATCT+GGG 0.583278 4_2:+63733772 None:intergenic
AAAGGGGCATATGGGTACAC+TGG 0.584470 4_2:+63729845 None:intergenic
AGGGAGCTTCCATTGCAACT+GGG 0.585486 4_2:+63733806 None:intergenic
GTTTGAGATAACCTAAGCTA+AGG 0.586680 4_2:+63729731 None:intergenic
ATAGAAATTGATAATTGTGA+AGG 0.588940 4_2:-63732146 Msa0614640:intron
AGTTAGGCACTGTTGTTGAA+GGG 0.595711 4_2:-63729575 Msa0614640:three_prime_UTR
GGGAGCTTCCATTGCAACTG+GGG 0.597227 4_2:+63733807 None:intergenic
TTGAGATGGTAATCACCACC+AGG 0.597308 4_2:+63729709 None:intergenic
CCTTATGGAGTGCGAGCCGG+AGG 0.597901 4_2:-63730437 Msa0614640:CDS
AGCATAAGGAACTCATTCAA+GGG 0.598978 4_2:-63733273 Msa0614640:CDS
CAAACTTCTTAAGCTAGCAA+TGG 0.605395 4_2:-63729689 Msa0614640:three_prime_UTR
TTGCAGGGTATTACTGACAA+TGG 0.611706 4_2:-63730135 Msa0614640:CDS
GCCGGAGGACGCAAATCTGG+TGG 0.617590 4_2:-63730422 Msa0614640:CDS
GAGGACGCAAATCTGGTGGT+AGG 0.619730 4_2:-63730418 Msa0614640:CDS
TTCAGCCCCGGACGCCAGGG+AGG 0.619819 4_2:+63731405 None:intergenic
TGCTCCGGGAAATGATTATG+TGG 0.620117 4_2:+63730209 None:intergenic
TATGTAGGTATACTTGTGAA+GGG 0.620517 4_2:-63733448 Msa0614640:intron
GACATTAGGGTAGTACGTGA+TGG 0.622739 4_2:-63731687 Msa0614640:CDS
GGGAGATTGACCAAATGGAA+AGG 0.626339 4_2:+63733762 None:intergenic
AAACTGTAAGGTGCAGTCGA+TGG 0.631902 4_2:+63730332 None:intergenic
AGGGTAGTACGTGATGGACG+CGG 0.642357 4_2:-63731681 Msa0614640:CDS
CGGCTCGCACTCCATAAGGA+GGG 0.646260 4_2:+63730441 None:intergenic
GAAGAAATCAGCTTAAAACA+TGG 0.646843 4_2:+63730185 None:intergenic
CTGTTGGCCCAAGATAAGTA+CGG 0.648222 4_2:+63732024 None:intergenic
ACTGAAGTCCAGTTCCGGCG+AGG 0.652000 4_2:-63734045 Msa0614640:five_prime_UTR
TATGGATTGGAAATGCCAGT+TGG 0.653758 4_2:-63731453 Msa0614640:CDS
AAGGTGCAGTCGATGGTATG+TGG 0.664482 4_2:+63730339 None:intergenic
GCCAAGATGCTTGTATTGGG+CGG 0.667054 4_2:-63730275 Msa0614640:CDS
GTGGTAGGAAGCTACTAAAG+GGG 0.679191 4_2:-63730403 Msa0614640:CDS
ACCAAGCACTGGCTACTCCG+GGG 0.680846 4_2:-63731968 Msa0614640:CDS
GAGACTAATAACCTTCCCAA+AGG 0.682399 4_2:+63733300 None:intergenic
TGGTAGGAAGCTACTAAAGG+GGG 0.688576 4_2:-63730402 Msa0614640:CDS
TTAGGTTATCTCAAACCTGG+TGG 0.690004 4_2:-63729724 Msa0614640:three_prime_UTR
AATCTGGGTGATGATGGAGA+GGG 0.697131 4_2:+63733787 None:intergenic
TGTATGTTTCTATGTCCAAG+GGG 0.722175 4_2:-63729891 Msa0614640:three_prime_UTR
GAAAACACATAGATACCACA+TGG 0.722516 4_2:+63733923 None:intergenic
TTGGACATAGAAACATACAC+CGG 0.731234 4_2:+63729895 None:intergenic
GAAGAGACAACAAAACCATG+TGG 0.737188 4_2:-63733938 Msa0614640:exon
ATTGGCCAATTAGGGCCACG+TGG 0.744890 4_2:-63729520 None:intergenic
AAGGGAATGTATGAGCTATG+GGG 0.749415 4_2:-63733430 Msa0614640:CDS
TAAGATAGGTCCTTACACAG+AGG 0.768257 4_2:-63730111 Msa0614640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATGACAAATAATTAAA+GGG + chr4_2:63729934-63729953 None:intergenic 10.0%
!! TAAAAATGACAAATAATTAA+AGG + chr4_2:63729935-63729954 None:intergenic 10.0%
!!! AAGTTTTTAATTTTTTATAG+TGG - chr4_2:63730062-63730081 Msa0614640:CDS 10.0%
!!! AGTTTTTAATTTTTTATAGT+GGG - chr4_2:63730063-63730082 Msa0614640:CDS 10.0%
!!! ATTTTATTTTTTTTTATGTG+GGG - chr4_2:63730096-63730115 Msa0614640:CDS 10.0%
!! CAATAAATAAATCAAATTAA+AGG + chr4_2:63730357-63730376 None:intergenic 10.0%
!! AATAGAAAATTATAAACAAT+AGG + chr4_2:63732745-63732764 None:intergenic 10.0%
!!! TTCTCATTTATTTAATTTAA+TGG - chr4_2:63733800-63733819 Msa0614640:CDS 10.0%
!!! AAAGTTTCAATTTTTCATAA+TGG - chr4_2:63729999-63730018 Msa0614640:CDS 15.0%
!!! AAGTTTCAATTTTTCATAAT+GGG - chr4_2:63730000-63730019 Msa0614640:CDS 15.0%
!!! AGTTTATCATTTTTTTATAG+TGG - chr4_2:63730031-63730050 Msa0614640:CDS 15.0%
!!! GTTTATCATTTTTTTATAGT+GGG - chr4_2:63730032-63730051 Msa0614640:CDS 15.0%
!!! ATTTGATTTATTTATTGCAT+TGG - chr4_2:63730360-63730379 Msa0614640:CDS 15.0%
!!! ATTTTTTCAATTAAGATAAC+AGG - chr4_2:63730834-63730853 Msa0614640:intron 15.0%
!!! TTTTTTCAATTAAGATAACA+GGG - chr4_2:63730835-63730854 Msa0614640:intron 15.0%
!! AAATTATAAACAATAGGATT+TGG + chr4_2:63732739-63732758 None:intergenic 15.0%
!!! GGTTGTTATTATATATATAA+TGG - chr4_2:63732891-63732910 Msa0614640:intron 15.0%
!! ATATCACAAAATTGAAAAAA+GGG + chr4_2:63733749-63733768 None:intergenic 15.0%
!! AATATCACAAAATTGAAAAA+AGG + chr4_2:63733750-63733769 None:intergenic 15.0%
!!! TATTTGTCATTTTTATTTCG+TGG - chr4_2:63729940-63729959 Msa0614640:CDS 20.0%
!!! ATTTGTCATTTTTATTTCGT+GGG - chr4_2:63729941-63729960 Msa0614640:CDS 20.0%
!!! TTTTTCAATTAAGATAACAG+GGG - chr4_2:63730836-63730855 Msa0614640:intron 20.0%
!!! AAAAAGTACAATCAAACAAA+GGG + chr4_2:63731095-63731114 None:intergenic 20.0%
!!! AAAAAAGTACAATCAAACAA+AGG + chr4_2:63731096-63731115 None:intergenic 20.0%
!!! ATAGAAATTGATAATTGTGA+AGG - chr4_2:63731428-63731447 Msa0614640:CDS 20.0%
!! AGAGAAAAAAGAAAAAGAAA+AGG + chr4_2:63731733-63731752 None:intergenic 20.0%
!! ATACTTAATCTAAATTGTTC+AGG - chr4_2:63731853-63731872 Msa0614640:intron 20.0%
!! TACTTAATCTAAATTGTTCA+GGG - chr4_2:63731854-63731873 Msa0614640:intron 20.0%
!! TAAAATTACTCCAAACATTA+CGG + chr4_2:63731925-63731944 None:intergenic 20.0%
!! ATCTTTCTGATAAACTTATT+TGG - chr4_2:63732083-63732102 Msa0614640:CDS 20.0%
!! AATTTACAAAGAAATGTACA+AGG + chr4_2:63732225-63732244 None:intergenic 20.0%
!!! CAAAACATGTTGATTATATT+CGG + chr4_2:63732358-63732377 None:intergenic 20.0%
!!! AATATAATCAACATGTTTTG+TGG - chr4_2:63732358-63732377 Msa0614640:intron 20.0%
!!! TTTTGCTTATAAACAAGATT+AGG + chr4_2:63732980-63732999 None:intergenic 20.0%
!! AAATGCAAAAATAACTTGAA+TGG - chr4_2:63733018-63733037 Msa0614640:intron 20.0%
!!! TGATAACTTTGTTTTTTACA+AGG - chr4_2:63733088-63733107 Msa0614640:intron 20.0%
!! TATCACAAAATTGAAAAAAG+GGG + chr4_2:63733748-63733767 None:intergenic 20.0%
!!! GATATTTTTGTCTAATTTTG+TGG - chr4_2:63733764-63733783 Msa0614640:CDS 20.0%
!!! AATTGGCATTTTAATAACAT+TGG - chr4_2:63734036-63734055 Msa0614640:five_prime_UTR 20.0%
!!! TTATTTTTTTTTATGTGGGG+TGG - chr4_2:63730099-63730118 Msa0614640:CDS 25.0%
!!! CTATCAATTGCTATTTACAT+AGG + chr4_2:63730434-63730453 None:intergenic 25.0%
!!! TGCTTACTTTTGATATTATG+TGG - chr4_2:63730514-63730533 Msa0614640:intron 25.0%
! GCATGATTAAAACTACATTA+TGG - chr4_2:63730636-63730655 Msa0614640:intron 25.0%
!! CAAGTTGAATTTGTAATGTT+GGG - chr4_2:63730742-63730761 Msa0614640:intron 25.0%
! ATCTCAAATGAAAACATATG+GGG + chr4_2:63731226-63731245 None:intergenic 25.0%
! CATCTCAAATGAAAACATAT+GGG + chr4_2:63731227-63731246 None:intergenic 25.0%
! GATAATTGTGAAGGTAATAA+TGG - chr4_2:63731437-63731456 Msa0614640:CDS 25.0%
!! AAAATTCTCTTTTGTTCAAC+TGG + chr4_2:63731470-63731489 None:intergenic 25.0%
!! GAACAAAAGAGAATTTTCTT+TGG - chr4_2:63731473-63731492 Msa0614640:intron 25.0%
!!! ATGTTCTTACACTTGTTTTA+TGG - chr4_2:63731963-63731982 Msa0614640:CDS 25.0%
!!! TCACTTTTCAGTTAGATAAA+AGG + chr4_2:63732335-63732354 None:intergenic 25.0%
!!! GTCATTTTACAAGTTAATTG+CGG - chr4_2:63732427-63732446 Msa0614640:intron 25.0%
! TACCTAACTGTAAAATTACT+AGG + chr4_2:63732493-63732512 None:intergenic 25.0%
! TTAGGTAATAGACTTTATCA+TGG - chr4_2:63732506-63732525 Msa0614640:intron 25.0%
! TATAAAGTGCACAAGATAAA+AGG + chr4_2:63732560-63732579 None:intergenic 25.0%
!!! AATTTTGATATGTCTGGATT+TGG - chr4_2:63732935-63732954 Msa0614640:intron 25.0%
!!! ATTTTGATATGTCTGGATTT+GGG - chr4_2:63732936-63732955 Msa0614640:intron 25.0%
! GATTCAAACAAGAAATATAG+AGG - chr4_2:63733626-63733645 Msa0614640:intron 25.0%
! TTTAATAACATTGGCCAATT+AGG - chr4_2:63734045-63734064 Msa0614640:five_prime_UTR 25.0%
! TTAATAACATTGGCCAATTA+GGG - chr4_2:63734046-63734065 Msa0614640:five_prime_UTR 25.0%
! AGAGAGAAGAAAAATGGTTT+TGG + chr4_2:63729582-63729601 None:intergenic 30.0%
! ATCTATGTGTTTTCTTTCAC+AGG - chr4_2:63729660-63729679 Msa0614640:three_prime_UTR 30.0%
! TGTTTTCTTTCACAGGTTAT+TGG - chr4_2:63729667-63729686 Msa0614640:three_prime_UTR 30.0%
GAATCTTTAGCCAAATTGTT+TGG - chr4_2:63729710-63729729 Msa0614640:three_prime_UTR 30.0%
ATCAAAAGCTCCAAACAATT+TGG + chr4_2:63729723-63729742 None:intergenic 30.0%
TTATGTAGGTATACTTGTGA+AGG - chr4_2:63730125-63730144 Msa0614640:CDS 30.0%
TATGTAGGTATACTTGTGAA+GGG - chr4_2:63730126-63730145 Msa0614640:CDS 30.0%
GTTTACTTATATCCCTTTCA+AGG - chr4_2:63730323-63730342 Msa0614640:CDS 30.0%
TTTGATATTATGTGGTGCAA+AGG - chr4_2:63730522-63730541 Msa0614640:intron 30.0%
TTGATATTATGTGGTGCAAA+GGG - chr4_2:63730523-63730542 Msa0614640:intron 30.0%
! TCTATTCACTGTCATTTCAT+TGG - chr4_2:63730587-63730606 Msa0614640:intron 30.0%
GAAACTGTATCATCTGATTT+GGG - chr4_2:63730609-63730628 Msa0614640:intron 30.0%
! AACTACATTATGGTTCTGTT+CGG - chr4_2:63730646-63730665 Msa0614640:intron 30.0%
! GTTGATAAACTAGCTTATAG+CGG - chr4_2:63730688-63730707 Msa0614640:intron 30.0%
! GCAAGTTGAATTTGTAATGT+TGG - chr4_2:63730741-63730760 Msa0614640:intron 30.0%
TCATACAAGCAAAATAGATC+TGG + chr4_2:63730971-63730990 None:intergenic 30.0%
! AATTTTGTCTTGCTAAACAG+AGG - chr4_2:63731026-63731045 Msa0614640:intron 30.0%
!!! GTACTTTTTTGTTAGTATCC+AGG - chr4_2:63731106-63731125 Msa0614640:intron 30.0%
CCATCTCAAATGAAAACATA+TGG + chr4_2:63731228-63731247 None:intergenic 30.0%
! CCATATGTTTTCATTTGAGA+TGG - chr4_2:63731225-63731244 Msa0614640:intron 30.0%
GACTTCAAAAAGGAATTCTA+TGG + chr4_2:63731251-63731270 None:intergenic 30.0%
TAATGCATCTGACTTCAAAA+AGG + chr4_2:63731261-63731280 None:intergenic 30.0%
!! GGAGTATGAGTTTTTCAAAA+AGG + chr4_2:63731318-63731337 None:intergenic 30.0%
GACAAAAGAAAGATACTTGT+TGG + chr4_2:63731339-63731358 None:intergenic 30.0%
! TTCTTTTGTCCATCATTGTT+TGG - chr4_2:63731349-63731368 Msa0614640:intron 30.0%
AAATTGCAATAGATCGTGAA+AGG + chr4_2:63731773-63731792 None:intergenic 30.0%
! ATTTGCAATGGATTCTGTTT+AGG - chr4_2:63731789-63731808 Msa0614640:intron 30.0%
GAAAATTCATGTCAATATGC+AGG - chr4_2:63731811-63731830 Msa0614640:intron 30.0%
!! TGTTTGGAGTAATTTTAAGC+AGG - chr4_2:63731928-63731947 Msa0614640:CDS 30.0%
AGTCTACTACATCATATAAG+TGG + chr4_2:63732026-63732045 None:intergenic 30.0%
! AATTTTTCTTCTGATCCGAA+AGG - chr4_2:63732241-63732260 Msa0614640:intron 30.0%
! ATTTTTCCAATCTCAGCAAT+TGG - chr4_2:63732304-63732323 Msa0614640:intron 30.0%
! TTTTACAAGTTAATTGCGGA+AGG - chr4_2:63732431-63732450 Msa0614640:intron 30.0%
TTTACAAGTTAATTGCGGAA+GGG - chr4_2:63732432-63732451 Msa0614640:intron 30.0%
! CACCTAGTAATTTTACAGTT+AGG - chr4_2:63732488-63732507 Msa0614640:intron 30.0%
TAATAGACTTTATCATGGAC+TGG - chr4_2:63732511-63732530 Msa0614640:intron 30.0%
ATTTCCAACTAGTGAGATAT+GGG + chr4_2:63732669-63732688 None:intergenic 30.0%
AATTTCCAACTAGTGAGATA+TGG + chr4_2:63732670-63732689 None:intergenic 30.0%
TGGAAATTAGAACAGACATA+AGG - chr4_2:63732682-63732701 Msa0614640:intron 30.0%
AAGTCAATAGCTGATTGTAT+AGG - chr4_2:63732769-63732788 Msa0614640:intron 30.0%
AAGTCCTCTTAAAGATTTGA+GGG - chr4_2:63732808-63732827 Msa0614640:intron 30.0%
ATATTAGGAAAAGACACAAC+TGG - chr4_2:63732870-63732889 Msa0614640:intron 30.0%
CCAGACATATCAAAATTTGT+CGG + chr4_2:63732932-63732951 None:intergenic 30.0%
GAAGAAATCAGCTTAAAACA+TGG + chr4_2:63733392-63733411 None:intergenic 30.0%
TTACTGACAATGGTTAAGAT+AGG - chr4_2:63733449-63733468 Msa0614640:intron 30.0%
AAACTTATTTCCTCTGTGTA+AGG + chr4_2:63733476-63733495 None:intergenic 30.0%
TTACACAGAGGAAATAAGTT+TGG - chr4_2:63733475-63733494 Msa0614640:intron 30.0%
GAATGGCGATTATAAGATTA+AGG - chr4_2:63733604-63733623 Msa0614640:intron 30.0%
GAAAATACGTTTAGACTTCA+CGG - chr4_2:63733648-63733667 Msa0614640:intron 30.0%
AAAATACGTTTAGACTTCAC+GGG - chr4_2:63733649-63733668 Msa0614640:intron 30.0%
! AATTGAAAAAAGGGGCATAT+GGG + chr4_2:63733740-63733759 None:intergenic 30.0%
! AAATTGAAAAAAGGGGCATA+TGG + chr4_2:63733741-63733760 None:intergenic 30.0%
! AGAATACTGATAAAAGCGTA+TGG + chr4_2:63733966-63733985 None:intergenic 30.0%
TCTTTCTTGCATTCTAAGTT+AGG - chr4_2:63733983-63734002 Msa0614640:five_prime_UTR 30.0%
!!! GAGAAGAAAAATGGTTTTGG+TGG + chr4_2:63729579-63729598 None:intergenic 35.0%
ATGAGCAGAGAGAAGAAAAA+TGG + chr4_2:63729588-63729607 None:intergenic 35.0%
GAAAACACATAGATACCACA+TGG + chr4_2:63729654-63729673 None:intergenic 35.0%
TTTGGCTAAAGATTCGACTT+CGG + chr4_2:63729705-63729724 None:intergenic 35.0%
TACGAGCAATTTCTTCTGAA+GGG + chr4_2:63729835-63729854 None:intergenic 35.0%
TTACGAGCAATTTCTTCTGA+AGG + chr4_2:63729836-63729855 None:intergenic 35.0%
AGGATTACTGTTGATACCTT+TGG - chr4_2:63730258-63730277 Msa0614640:CDS 35.0%
GGATTACTGTTGATACCTTT+GGG - chr4_2:63730259-63730278 Msa0614640:CDS 35.0%
AGCATAAGGAACTCATTCAA+GGG - chr4_2:63730301-63730320 Msa0614640:CDS 35.0%
GGAAACTGTATCATCTGATT+TGG - chr4_2:63730608-63730627 Msa0614640:intron 35.0%
!! TGTATCATCTGATTTGGGTT+TGG - chr4_2:63730614-63730633 Msa0614640:intron 35.0%
CTTACTCACTATCATCTACA+AGG + chr4_2:63730718-63730737 None:intergenic 35.0%
ATAACAGGGGTAAAATTGAG+AGG - chr4_2:63730849-63730868 Msa0614640:intron 35.0%
TAACAGGGGTAAAATTGAGA+GGG - chr4_2:63730850-63730869 Msa0614640:intron 35.0%
GGATAGGAAACACATAATTC+CGG + chr4_2:63731074-63731093 None:intergenic 35.0%
GTACAATCAAACAAAGGGAT+AGG + chr4_2:63731090-63731109 None:intergenic 35.0%
AAAAGTAACCTGCAAAATCC+TGG + chr4_2:63731127-63731146 None:intergenic 35.0%
! AACAAAGTGCCAAACAATGA+TGG + chr4_2:63731361-63731380 None:intergenic 35.0%
! ATTCTCTTTTGTTCAACTGG+AGG + chr4_2:63731467-63731486 None:intergenic 35.0%
! ATTTTCTTTGGTCGTGAAGT+TGG - chr4_2:63731485-63731504 Msa0614640:intron 35.0%
TTGAAAAGCCGTACTTATCT+TGG - chr4_2:63731542-63731561 Msa0614640:intron 35.0%
TGAAAAGCCGTACTTATCTT+GGG - chr4_2:63731543-63731562 Msa0614640:intron 35.0%
! CTAGTTTATGACCCTTTTGT+TGG - chr4_2:63731632-63731651 Msa0614640:intron 35.0%
GAAAAGGTGAAGAATGAAGA+AGG + chr4_2:63731717-63731736 None:intergenic 35.0%
TAGATCGTGAAAGGATAAGT+TGG + chr4_2:63731764-63731783 None:intergenic 35.0%
CGATCTATTGCAATTTGCAA+TGG - chr4_2:63731777-63731796 Msa0614640:intron 35.0%
GTATATGTTGCAGTATGGAT+TGG - chr4_2:63732108-63732127 Msa0614640:intron 35.0%
!!! AAATGCCAGTTGGTCTTTTA+AGG - chr4_2:63732131-63732150 Msa0614640:intron 35.0%
!!! AATGCCAGTTGGTCTTTTAA+GGG - chr4_2:63732132-63732151 Msa0614640:intron 35.0%
AGTGCACAAGATAAAAGGTA+GGG + chr4_2:63732555-63732574 None:intergenic 35.0%
AAGTGCACAAGATAAAAGGT+AGG + chr4_2:63732556-63732575 None:intergenic 35.0%
!! TATAAGCATCCGCTTTTGTT+CGG - chr4_2:63732576-63732595 Msa0614640:intron 35.0%
ACTAGTGAGATATGGGAATA+AGG + chr4_2:63732662-63732681 None:intergenic 35.0%
TATTCCCATATCTCACTAGT+TGG - chr4_2:63732662-63732681 Msa0614640:intron 35.0%
GCATTATGTTCTATGTCCAT+TGG + chr4_2:63732709-63732728 None:intergenic 35.0%
CAAGTCCTCTTAAAGATTTG+AGG - chr4_2:63732807-63732826 Msa0614640:intron 35.0%
AGTCCTCTTAAAGATTTGAG+GGG - chr4_2:63732809-63732828 Msa0614640:intron 35.0%
AGGTGAGTAGGACTAATATT+AGG - chr4_2:63732855-63732874 Msa0614640:intron 35.0%
!! CCGACAAATTTTGATATGTC+TGG - chr4_2:63732929-63732948 Msa0614640:intron 35.0%
ATAATATGTGACCCTCCTTA+TGG - chr4_2:63733122-63733141 Msa0614640:intron 35.0%
ACACACTCAACTAAACTGTA+AGG + chr4_2:63733257-63733276 None:intergenic 35.0%
TTCTTAGTTCACGATATTGC+AGG - chr4_2:63733423-63733442 Msa0614640:CDS 35.0%
TCTTAGTTCACGATATTGCA+GGG - chr4_2:63733424-63733443 Msa0614640:CDS 35.0%
GATGCAACACCTTGAATTTA+AGG - chr4_2:63733505-63733524 Msa0614640:intron 35.0%
CATGGTTCTCCTTAAATTCA+AGG + chr4_2:63733517-63733536 None:intergenic 35.0%
TTAAGGAGAACCATGTAAAG+TGG - chr4_2:63733522-63733541 Msa0614640:intron 35.0%
TTGGACATAGAAACATACAC+CGG + chr4_2:63733682-63733701 None:intergenic 35.0%
! GTGTATGTTTCTATGTCCAA+GGG - chr4_2:63733682-63733701 Msa0614640:intron 35.0%
! TGTATGTTTCTATGTCCAAG+GGG - chr4_2:63733683-63733702 Msa0614640:intron 35.0%
! ACGAAAACTTTTCACTACAG+AGG - chr4_2:63733706-63733725 Msa0614640:intron 35.0%
ATTCTTACTCTCCTTAGCTT+AGG - chr4_2:63733832-63733851 Msa0614640:CDS 35.0%
! GTTTGAGATAACCTAAGCTA+AGG + chr4_2:63733846-63733865 None:intergenic 35.0%
CTAGCTTAAGAAGTTTGAGA+TGG + chr4_2:63733882-63733901 None:intergenic 35.0%
CAAACTTCTTAAGCTAGCAA+TGG - chr4_2:63733885-63733904 Msa0614640:CDS 35.0%
AGAAAACTGAAGTCCAGTTC+CGG - chr4_2:63729524-63729543 Msa0614640:three_prime_UTR 40.0%
!!! AGGGTTTTGAAACAGGGTTT+AGG - chr4_2:63729549-63729568 Msa0614640:three_prime_UTR 40.0%
GAAGAGACAACAAAACCATG+TGG - chr4_2:63729636-63729655 Msa0614640:three_prime_UTR 40.0%
TTGGCTAAAGATTCGACTTC+GGG + chr4_2:63729704-63729723 None:intergenic 40.0%
CCAAATGGAAAGGAGAATCT+GGG + chr4_2:63729805-63729824 None:intergenic 40.0%
ACCAAATGGAAAGGAGAATC+TGG + chr4_2:63729806-63729825 None:intergenic 40.0%
TGAAGGGAATGTATGAGCTA+TGG - chr4_2:63730142-63730161 Msa0614640:CDS 40.0%
GAAGGGAATGTATGAGCTAT+GGG - chr4_2:63730143-63730162 Msa0614640:CDS 40.0%
AAGGGAATGTATGAGCTATG+GGG - chr4_2:63730144-63730163 Msa0614640:CDS 40.0%
TATGGCAACTTTCTCTCATC+TGG + chr4_2:63730216-63730235 None:intergenic 40.0%
TGAGAGAAAGTTGCCATACT+TGG - chr4_2:63730218-63730237 Msa0614640:CDS 40.0%
! GTGCTGTTAGATTCCAAGTA+TGG + chr4_2:63730234-63730253 None:intergenic 40.0%
TGGAATCTAACAGCACTTTC+AGG - chr4_2:63730238-63730257 Msa0614640:CDS 40.0%
! TACTGTTGATACCTTTGGGA+AGG - chr4_2:63730263-63730282 Msa0614640:CDS 40.0%
GAGACTAATAACCTTCCCAA+AGG + chr4_2:63730277-63730296 None:intergenic 40.0%
! TATTAGTCTCCAGGAGCATA+AGG - chr4_2:63730287-63730306 Msa0614640:CDS 40.0%
GAGCATAAGGAACTCATTCA+AGG - chr4_2:63730300-63730319 Msa0614640:CDS 40.0%
AAGGACACACAACCTTGAAA+GGG + chr4_2:63730338-63730357 None:intergenic 40.0%
AAAGGACACACAACCTTGAA+AGG + chr4_2:63730339-63730358 None:intergenic 40.0%
CATGGTAAATTATGACCACG+AGG - chr4_2:63730392-63730411 Msa0614640:CDS 40.0%
!! TCAATAGTTTGCTGCACTCA+AGG + chr4_2:63730489-63730508 None:intergenic 40.0%
TAGCTTCTATTGAGAGTTGC+CGG - chr4_2:63731052-63731071 Msa0614640:intron 40.0%
! GTTAGTATCCAGGATTTTGC+AGG - chr4_2:63731116-63731135 Msa0614640:intron 40.0%
! TTGTTTGGCACTTTGTTTGC+AGG - chr4_2:63731364-63731383 Msa0614640:intron 40.0%
! TGTTTGGCACTTTGTTTGCA+GGG - chr4_2:63731365-63731384 Msa0614640:intron 40.0%
! TGCGGAGATAGCTTTTCTAA+TGG - chr4_2:63731580-63731599 Msa0614640:intron 40.0%
! TATGACCCTTTTGTTGGAAC+CGG - chr4_2:63731638-63731657 Msa0614640:intron 40.0%
TACTTCCGGTTCCAACAAAA+GGG + chr4_2:63731646-63731665 None:intergenic 40.0%
ATACTTCCGGTTCCAACAAA+AGG + chr4_2:63731647-63731666 None:intergenic 40.0%
TGCTGCAACAAGAATACTTC+CGG + chr4_2:63731660-63731679 None:intergenic 40.0%
!!! TCATTTTGGAGCAATGACCA+TGG - chr4_2:63731682-63731701 Msa0614640:CDS 40.0%
TTACTCCAAACATTACGGTC+AGG + chr4_2:63731920-63731939 None:intergenic 40.0%
TGGCTGTATATGTTGCAGTA+TGG - chr4_2:63732103-63732122 Msa0614640:CDS 40.0%
!! TATGGATTGGAAATGCCAGT+TGG - chr4_2:63732121-63732140 Msa0614640:intron 40.0%
AAATTTACCTCTTTCAGCCC+CGG + chr4_2:63732184-63732203 None:intergenic 40.0%
GCAAAACCAATTGCTGAGAT+TGG + chr4_2:63732313-63732332 None:intergenic 40.0%
GTGGTTTATTACCTCCCTTT+CGG - chr4_2:63732377-63732396 Msa0614640:intron 40.0%
CAGCAACACAATTACCGAAA+GGG + chr4_2:63732394-63732413 None:intergenic 40.0%
TCAGCAACACAATTACCGAA+AGG + chr4_2:63732395-63732414 None:intergenic 40.0%
TAATTGCGGAAGGGATAGAT+TGG - chr4_2:63732441-63732460 Msa0614640:intron 40.0%
ATAAAAGGTAGGGTTGGACT+TGG + chr4_2:63732545-63732564 None:intergenic 40.0%
CACAAGATAAAAGGTAGGGT+TGG + chr4_2:63732551-63732570 None:intergenic 40.0%
TACTATGCACCGAACAAAAG+CGG + chr4_2:63732588-63732607 None:intergenic 40.0%
GTTAAGCAATCTCCTTAGAC+AGG + chr4_2:63732625-63732644 None:intergenic 40.0%
GAGATATGGGAATAAGGCTT+TGG + chr4_2:63732656-63732675 None:intergenic 40.0%
AGAACAGACATAAGGTCCAA+TGG - chr4_2:63732690-63732709 Msa0614640:intron 40.0%
TCTCCCCTCAAATCTTTAAG+AGG + chr4_2:63732815-63732834 None:intergenic 40.0%
TCTTAAAGATTTGAGGGGAG+AGG - chr4_2:63732814-63732833 Msa0614640:intron 40.0%
TGTGATGCCTTACATTGTTC+CGG - chr4_2:63733196-63733215 Msa0614640:intron 40.0%
GACTCTTCTTCTCTCAATAC+AGG + chr4_2:63733344-63733363 None:intergenic 40.0%
GTCTCCACATAATCATTTCC+CGG - chr4_2:63733361-63733380 Msa0614640:CDS 40.0%
AGCTTAAAACATGGATGCTC+CGG + chr4_2:63733383-63733402 None:intergenic 40.0%
! TTGCAGGGTATTACTGACAA+TGG - chr4_2:63733439-63733458 Msa0614640:CDS 40.0%
TAAGATAGGTCCTTACACAG+AGG - chr4_2:63733463-63733482 Msa0614640:intron 40.0%
AGGAAATAAGTTTGGCAGCT+AGG - chr4_2:63733483-63733502 Msa0614640:intron 40.0%
! CATCTTCTAGCCACTTTACA+TGG + chr4_2:63733535-63733554 None:intergenic 40.0%
CATGTAAAGTGGCTAGAAGA+TGG - chr4_2:63733533-63733552 Msa0614640:intron 40.0%
GATGCTCAGTTAAAGGAGAA+TGG - chr4_2:63733587-63733606 Msa0614640:intron 40.0%
! GGTGTATGTTTCTATGTCCA+AGG - chr4_2:63733681-63733700 Msa0614640:intron 40.0%
AGCTTAGGTTATCTCAAACC+TGG - chr4_2:63733847-63733866 Msa0614640:CDS 40.0%
TTAGGTTATCTCAAACCTGG+TGG - chr4_2:63733850-63733869 Msa0614640:CDS 40.0%
TTAAGCTAGCAATGGTAGCT+CGG - chr4_2:63733893-63733912 Msa0614640:CDS 40.0%
! AAGTTAGGCACTGTTGTTGA+AGG - chr4_2:63733998-63734017 Msa0614640:five_prime_UTR 40.0%
! AGTTAGGCACTGTTGTTGAA+GGG - chr4_2:63733999-63734018 Msa0614640:five_prime_UTR 40.0%
!! AATCTGGGTGATGATGGAGA+GGG + chr4_2:63729790-63729809 None:intergenic 45.0%
AAGGAGAATCTGGGTGATGA+TGG + chr4_2:63729796-63729815 None:intergenic 45.0%
CCCAGATTCTCCTTTCCATT+TGG - chr4_2:63729802-63729821 Msa0614640:three_prime_UTR 45.0%
GGGAGATTGACCAAATGGAA+AGG + chr4_2:63729815-63729834 None:intergenic 45.0%
CTGAAGGGAGATTGACCAAA+TGG + chr4_2:63729820-63729839 None:intergenic 45.0%
ATGTGGGGTGGCAATTATGT+AGG - chr4_2:63730111-63730130 Msa0614640:CDS 45.0%
ATGTATGAGCTATGGGGTGA+AGG - chr4_2:63730150-63730169 Msa0614640:CDS 45.0%
TGTATGAGCTATGGGGTGAA+GGG - chr4_2:63730151-63730170 Msa0614640:CDS 45.0%
! TGGGAAGGTTATTAGTCTCC+AGG - chr4_2:63730278-63730297 Msa0614640:CDS 45.0%
GAATGAGTTCCTTATGCTCC+TGG + chr4_2:63730299-63730318 None:intergenic 45.0%
GAAAACCAGAGCACAACTTC+TGG - chr4_2:63731402-63731421 Msa0614640:CDS 45.0%
! CGGCTTTTCAACTCGTATGT+CGG + chr4_2:63731533-63731552 None:intergenic 45.0%
CTGTTGGCCCAAGATAAGTA+CGG + chr4_2:63731553-63731572 None:intergenic 45.0%
AAAAGCTATCTCCGCATCCA+TGG + chr4_2:63731576-63731595 None:intergenic 45.0%
! GGGTCATAAACTAGTTTCCC+CGG + chr4_2:63731626-63731645 None:intergenic 45.0%
! CTTGTTGCAGCAGCTCATTT+TGG - chr4_2:63731668-63731687 Msa0614640:CDS 45.0%
!! AGGGTGCTGACATTGACATT+AGG - chr4_2:63731873-63731892 Msa0614640:intron 45.0%
!! GGGTGCTGACATTGACATTA+GGG - chr4_2:63731874-63731893 Msa0614640:intron 45.0%
GACATTAGGGTAGTACGTGA+TGG - chr4_2:63731887-63731906 Msa0614640:intron 45.0%
TCAGCCCTTAAAAGACCAAC+TGG + chr4_2:63732139-63732158 None:intergenic 45.0%
GCACATAGATGCTCTCCTTT+CGG + chr4_2:63732259-63732278 None:intergenic 45.0%
AGCATCTATGTGCTGTGTCT+TGG - chr4_2:63732266-63732285 Msa0614640:intron 45.0%
CAACACAATTACCGAAAGGG+AGG + chr4_2:63732391-63732410 None:intergenic 45.0%
!! GGTAATTGTGTTGCTGACTC+TGG - chr4_2:63732398-63732417 Msa0614640:intron 45.0%
!! TGAGTGCTGAATCCTGTCTA+AGG - chr4_2:63732610-63732629 Msa0614640:intron 45.0%
GGACATTAGTATGAGCTCTG+AGG - chr4_2:63732835-63732854 Msa0614640:intron 45.0%
TGGTGGTAGGAAGCTACTAA+AGG - chr4_2:63733169-63733188 Msa0614640:intron 45.0%
GGTGGTAGGAAGCTACTAAA+GGG - chr4_2:63733170-63733189 Msa0614640:intron 45.0%
GTGGTAGGAAGCTACTAAAG+GGG - chr4_2:63733171-63733190 Msa0614640:intron 45.0%
TGGTAGGAAGCTACTAAAGG+GGG - chr4_2:63733172-63733191 Msa0614640:intron 45.0%
TTGTCGTCCGGAACAATGTA+AGG + chr4_2:63733206-63733225 None:intergenic 45.0%
! TGGTCTGTTCTTTTGTCGTC+CGG + chr4_2:63733218-63733237 None:intergenic 45.0%
AAACTGTAAGGTGCAGTCGA+TGG + chr4_2:63733245-63733264 None:intergenic 45.0%
TGCTGCCAAGATGCTTGTAT+TGG - chr4_2:63733295-63733314 Msa0614640:CDS 45.0%
GCTGCCAAGATGCTTGTATT+GGG - chr4_2:63733296-63733315 Msa0614640:CDS 45.0%
TGCTCCGGGAAATGATTATG+TGG + chr4_2:63733368-63733387 None:intergenic 45.0%
GCTTAAAACATGGATGCTCC+GGG + chr4_2:63733382-63733401 None:intergenic 45.0%
! TTCTGCAGTTTTCAGTCCAG+TGG - chr4_2:63733565-63733584 Msa0614640:intron 45.0%
TCCAGTGGATGCTCAGTTAA+AGG - chr4_2:63733580-63733599 Msa0614640:intron 45.0%
TCCTTTAACTGAGCATCCAC+TGG + chr4_2:63733584-63733603 None:intergenic 45.0%
! GTGAAAAGTTTTCGTCCCCT+TGG + chr4_2:63733701-63733720 None:intergenic 45.0%
TTGAGATGGTAATCACCACC+AGG + chr4_2:63733868-63733887 None:intergenic 45.0%
!!! AAATTTTATTTTTTTTTATG+TGG - chr4_2:63730094-63730113 Msa0614640:CDS 5.0%
!!! AATTTTATTTTTTTTTATGT+GGG - chr4_2:63730095-63730114 Msa0614640:CDS 5.0%
ACGTTCATCCCCAGTTGCAA+TGG - chr4_2:63729759-63729778 Msa0614640:three_prime_UTR 50.0%
AGGGAGCTTCCATTGCAACT+GGG + chr4_2:63729771-63729790 None:intergenic 50.0%
!! GAATCTGGGTGATGATGGAG+AGG + chr4_2:63729791-63729810 None:intergenic 50.0%
GTATGAGCTATGGGGTGAAG+GGG - chr4_2:63730152-63730171 Msa0614640:CDS 50.0%
TATGAGCTATGGGGTGAAGG+GGG - chr4_2:63730153-63730172 Msa0614640:CDS 50.0%
GGGTAGCTATGAGGAGTTGA+AGG - chr4_2:63730173-63730192 Msa0614640:CDS 50.0%
! TTGCATTGGTGCTCTCTGCA+TGG - chr4_2:63730374-63730393 Msa0614640:CDS 50.0%
CTGAAGTGACGATAACCTCG+TGG + chr4_2:63730410-63730429 None:intergenic 50.0%
GGGGAATAAGAGATGCACAC+AGG + chr4_2:63731207-63731226 None:intergenic 50.0%
ATCAGCCAGAAGTTGTGCTC+TGG + chr4_2:63731410-63731429 None:intergenic 50.0%
!! GTGAAGTTGGTGCTGCTGAT+AGG - chr4_2:63731498-63731517 Msa0614640:intron 50.0%
TTATCTTGGGCCAACAGCCA+TGG - chr4_2:63731556-63731575 Msa0614640:intron 50.0%
TCTAATGGCCAACCAAGCAC+TGG - chr4_2:63731595-63731614 Msa0614640:intron 50.0%
GAAGAAGGAGAAGCAGACCA+TGG + chr4_2:63731702-63731721 None:intergenic 50.0%
!! GTATGAGCTCTGAGGTGAGT+AGG - chr4_2:63732843-63732862 Msa0614640:intron 50.0%
AAGGTGCAGTCGATGGTATG+TGG + chr4_2:63733238-63733257 None:intergenic 50.0%
GCCAAGATGCTTGTATTGGG+CGG - chr4_2:63733299-63733318 Msa0614640:CDS 50.0%
TCCGCCCAATACAAGCATCT+TGG + chr4_2:63733303-63733322 None:intergenic 50.0%
!! AGACTTCACGGGTTAGATGC+CGG - chr4_2:63733660-63733679 Msa0614640:intron 50.0%
! AAAGGGGCATATGGGTACAC+TGG + chr4_2:63733732-63733751 None:intergenic 50.0%
GGGCAGCACTTGTGTACAAT+TGG - chr4_2:63734019-63734038 Msa0614640:five_prime_UTR 50.0%
TTCAAAACCCTCGCCGGAAC+TGG + chr4_2:63729540-63729559 None:intergenic 55.0%
!!! TCCGGCGAGGGTTTTGAAAC+AGG - chr4_2:63729542-63729561 Msa0614640:three_prime_UTR 55.0%
CCCTGTTTCAAAACCCTCGC+CGG + chr4_2:63729546-63729565 None:intergenic 55.0%
!!! CCGGCGAGGGTTTTGAAACA+GGG - chr4_2:63729543-63729562 Msa0614640:three_prime_UTR 55.0%
! GGGGATGAACGTCGTCGTTT+TGG + chr4_2:63729751-63729770 None:intergenic 55.0%
GGGAGCTTCCATTGCAACTG+GGG + chr4_2:63729770-63729789 None:intergenic 55.0%
GAGGGAGCTTCCATTGCAAC+TGG + chr4_2:63729772-63729791 None:intergenic 55.0%
ATCTCCGCATCCATGGCTGT+TGG + chr4_2:63731569-63731588 None:intergenic 55.0%
!! CAACCAAGCACTGGCTACTC+CGG - chr4_2:63731604-63731623 Msa0614640:intron 55.0%
!! AACCAAGCACTGGCTACTCC+GGG - chr4_2:63731605-63731624 Msa0614640:intron 55.0%
!! AGGGTAGTACGTGATGGACG+CGG - chr4_2:63731893-63731912 Msa0614640:CDS 55.0%
GCGGTCCTGACCGTAATGTT+TGG - chr4_2:63731912-63731931 Msa0614640:CDS 55.0%
CTGACAACAACCTTCCTCCC+TGG - chr4_2:63732155-63732174 Msa0614640:CDS 55.0%
ACCACCAGATTTGCGTCCTC+CGG + chr4_2:63733156-63733175 None:intergenic 55.0%
GAGGACGCAAATCTGGTGGT+AGG - chr4_2:63733156-63733175 Msa0614640:intron 55.0%
ACTGAAGTCCAGTTCCGGCG+AGG - chr4_2:63729529-63729548 Msa0614640:three_prime_UTR 60.0%
CTGAAGTCCAGTTCCGGCGA+GGG - chr4_2:63729530-63729549 Msa0614640:three_prime_UTR 60.0%
GGGTGAAGGGGGTAGCTATG+AGG - chr4_2:63730164-63730183 Msa0614640:CDS 60.0%
TGGGCCAACAGCCATGGATG+CGG - chr4_2:63731562-63731581 Msa0614640:intron 60.0%
CGGAGTAGCCAGTGCTTGGT+TGG + chr4_2:63731606-63731625 None:intergenic 60.0%
!! ACCAAGCACTGGCTACTCCG+GGG - chr4_2:63731606-63731625 Msa0614640:intron 60.0%
CGGCTCGCACTCCATAAGGA+GGG + chr4_2:63733136-63733155 None:intergenic 60.0%
CCTCCTTATGGAGTGCGAGC+CGG - chr4_2:63733134-63733153 Msa0614640:intron 60.0%
TCCCCGGAGTAGCCAGTGCT+TGG + chr4_2:63731610-63731629 None:intergenic 65.0%
CAACCTTCCTCCCTGGCGTC+CGG - chr4_2:63732162-63732181 Msa0614640:CDS 65.0%
AACCTTCCTCCCTGGCGTCC+GGG - chr4_2:63732163-63732182 Msa0614640:CDS 65.0%
TCTTTCAGCCCCGGACGCCA+GGG + chr4_2:63732175-63732194 None:intergenic 65.0%
! CCGGCTCGCACTCCATAAGG+AGG + chr4_2:63733137-63733156 None:intergenic 65.0%
! CCTCCGGCTCGCACTCCATA+AGG + chr4_2:63733140-63733159 None:intergenic 65.0%
CCTTATGGAGTGCGAGCCGG+AGG - chr4_2:63733137-63733156 Msa0614640:intron 65.0%
CGAGCCGGAGGACGCAAATC+TGG - chr4_2:63733149-63733168 Msa0614640:intron 65.0%
GCCGGAGGACGCAAATCTGG+TGG - chr4_2:63733152-63733171 Msa0614640:intron 65.0%
ACCTTCCTCCCTGGCGTCCG+GGG - chr4_2:63732164-63732183 Msa0614640:CDS 70.0%
CTCTTTCAGCCCCGGACGCC+AGG + chr4_2:63732176-63732195 None:intergenic 70.0%
CTGGCGTCCGGGGCTGAAAG+AGG - chr4_2:63732174-63732193 Msa0614640:CDS 70.0%
TTCAGCCCCGGACGCCAGGG+AGG + chr4_2:63732172-63732191 None:intergenic 75.0%
! GCCCCGGACGCCAGGGAGGA+AGG + chr4_2:63732168-63732187 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 63729523 63734073 63729523 ID=Msa0614640;Name=Msa0614640
chr4_2 mRNA 63729523 63734073 63729523 ID=Msa0614640-mRNA-1;Parent=Msa0614640;Name=Msa0614640-mRNA-1;_AED=0.04;_eAED=0.04;_QI=130|0.83|0.71|1|0.66|0.71|7|412|475
chr4_2 exon 63729523 63730486 63729523 ID=Msa0614640-mRNA-1:exon:17830;Parent=Msa0614640-mRNA-1
chr4_2 exon 63731401 63731475 63731401 ID=Msa0614640-mRNA-1:exon:17829;Parent=Msa0614640-mRNA-1
chr4_2 exon 63731647 63731721 63731647 ID=Msa0614640-mRNA-1:exon:17828;Parent=Msa0614640-mRNA-1
chr4_2 exon 63731893 63732125 63731893 ID=Msa0614640-mRNA-1:exon:17827;Parent=Msa0614640-mRNA-1
chr4_2 exon 63732147 63732210 63732147 ID=Msa0614640-mRNA-1:exon:17826;Parent=Msa0614640-mRNA-1
chr4_2 exon 63733252 63733463 63733252 ID=Msa0614640-mRNA-1:exon:17825;Parent=Msa0614640-mRNA-1
chr4_2 exon 63733727 63734073 63733727 ID=Msa0614640-mRNA-1:exon:17824;Parent=Msa0614640-mRNA-1
chr4_2 five_prime_UTR 63733944 63734073 63733944 ID=Msa0614640-mRNA-1:five_prime_utr;Parent=Msa0614640-mRNA-1
chr4_2 CDS 63733727 63733943 63733727 ID=Msa0614640-mRNA-1:cds;Parent=Msa0614640-mRNA-1
chr4_2 CDS 63733252 63733463 63733252 ID=Msa0614640-mRNA-1:cds;Parent=Msa0614640-mRNA-1
chr4_2 CDS 63732147 63732210 63732147 ID=Msa0614640-mRNA-1:cds;Parent=Msa0614640-mRNA-1
chr4_2 CDS 63731893 63732125 63731893 ID=Msa0614640-mRNA-1:cds;Parent=Msa0614640-mRNA-1
chr4_2 CDS 63731647 63731721 63731647 ID=Msa0614640-mRNA-1:cds;Parent=Msa0614640-mRNA-1
chr4_2 CDS 63731401 63731475 63731401 ID=Msa0614640-mRNA-1:cds;Parent=Msa0614640-mRNA-1
chr4_2 CDS 63729935 63730486 63729935 ID=Msa0614640-mRNA-1:cds;Parent=Msa0614640-mRNA-1
chr4_2 three_prime_UTR 63729523 63729934 63729523 ID=Msa0614640-mRNA-1:three_prime_utr;Parent=Msa0614640-mRNA-1
Gene Sequence

>Msa0614640

ATGTGGTATCTATGTGTTTTCTTTCACAGGTTATTGGATTACAGAAAACCCGAAGTCGAATCTTTAGCCAAATTGTTTGGAGCTTTTGATGACAACCAAAACGACGACGTTCATCCCCAGTTGCAATGGAAGCTCCCTCTCCATCATCACCCAGATTCTCCTTTCCATTTGGTCAATCTCCCTTCAGAAGAAATTGCTCGTAACATTGCTAATCGAAGTATACTTGTGAAGGGAATGTATGAGCTATGGGGTGAAGGGGGTAGCTATGAGGAGTTGAAGGATTCTATATTGAGTTATCCAGATGAGAGAAAGTTGCCATACTTGGAATCTAACAGCACTTTCAGGATTACTGTTGATACCTTTGGGAAGGTTATTAGTCTCCAGGAGCATAAGGAACTCATTCAAGGGTTTACTTATATCCCTTTCAAGGGAAAAGTAAATTTGAGAAAACCAGAGCACAACTTCTGGCTGATAGAAATTGATAATTGTGAAGTTGAACAAAAGAGAATTTTCTTTGGTCGTGAAGTTGGTGCTGCTGATAGGAAGCTTTTACCGACATACGAGTTGAAAAGCCGTACTTATCTTGGGCCAACAGCCATGGATGCGGAGATAGCTTTTCTAATGGCCAACCAAGCACTGGCTACTCCGGGGAAACTAGTTTATGACCCTTTTGTTGGAACCGGAAGTATTCTTGTTGCAGCAGCTCATTTTGGAGCAATGACCATGGGTGCTGACATTGACATTAGGGTAGTACGTGATGGACGCGGTCCTGACCGTAATGTTTGGAGTAATTTTAAGCAGTATGGATTGGAAATGCCAGTTGGTCTTTTAAGGGCTGACAACAACCTTCCTCCCTGGCGTCCGGGGCTGAAAGAGGTATTTGATGCGATAATATGTGACCCTCCTTATGGAGTGCGAGCCGGAGGACGCAAATCTGGTGGTAGGAAGCTACTAAAGGGGGCTGTGATGCCTTACATTGTTCCGGACGACAAAAGAACAGACCACATACCATCGACTGCACCTTACAGTTTAGTTGAGTGTGTACATGATTTGCTTGATCTTGCTGCCAAGATGCTTGTATTGGGCGGAAGACTTGTGTTTTTCTATCCTGTATTGAGAGAAGAAGAGTCTCCACATAATCATTTCCCGGAGCATCCATGTTTTAAGCTGATTTCTTCTTCTGAGCAGATTCTTAGTTCACGATATTGCAGGGTATTACTGACAATGGTTAAGATAGGTCCTTACACAGAGGAAATAAGTTTGGCAGCTAGGATGCAACACCTTGAATTTAAGGAGAACCATGTAAAGTGGCTAGAAGATGGTAATCTTCATTCTGCAGTTTTCAGTCCAGTGGATGCTCAGTTAAAGGAGAATGGCGATTATAAGATTAAGGATTCAAACAAGAAATATAGAGGAAAATACGTTTAG

Protein sequence

>Msa0614640

MWYLCVFFHRLLDYRKPEVESLAKLFGAFDDNQNDDVHPQLQWKLPLHHHPDSPFHLVNLPSEEIARNIANRSILVKGMYELWGEGGSYEELKDSILSYPDERKLPYLESNSTFRITVDTFGKVISLQEHKELIQGFTYIPFKGKVNLRKPEHNFWLIEIDNCEVEQKRIFFGREVGAADRKLLPTYELKSRTYLGPTAMDAEIAFLMANQALATPGKLVYDPFVGTGSILVAAAHFGAMTMGADIDIRVVRDGRGPDRNVWSNFKQYGLEMPVGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGAVMPYIVPDDKRTDHIPSTAPYSLVECVHDLLDLAAKMLVLGGRLVFFYPVLREEESPHNHFPEHPCFKLISSSEQILSSRYCRVLLTMVKIGPYTEEISLAARMQHLEFKENHVKWLEDGNLHSAVFSPVDAQLKENGDYKIKDSNKKYRGKYV*