Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640210 | XP_013455546.1 | 80.982 | 163 | 13 | 2 | 1 | 150 | 1 | 158 | 1.19e-82 | 250 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640210 | A0A072UIS2 | 80.982 | 163 | 13 | 2 | 1 | 150 | 1 | 158 | 5.70e-83 | 250 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0089700 | Msa0640210 | 0.800863 | 1.180381e-48 | -8.615850e-47 |
| Msa0112550 | Msa0640210 | 0.814363 | 1.600391e-51 | -8.615850e-47 |
| Msa0640210 | Msa0648810 | 0.810904 | 9.139476e-51 | -8.615850e-47 |
| Msa0640210 | Msa0673620 | 0.834620 | 2.698149e-56 | -8.615850e-47 |
| Msa0537960 | Msa0640210 | 0.807397 | 5.157982e-50 | -8.615850e-47 |
| Msa0565370 | Msa0640210 | 0.816908 | 4.339693e-52 | -8.615850e-47 |
| Msa0565430 | Msa0640210 | 0.825056 | 5.771252e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640210 | MtrunA17_Chr4g0023841 | 80.982 | 163 | 13 | 2 | 1 | 150 | 1 | 158 | 1.10e-86 | 250 |
| Msa0640210 | MtrunA17_Chr1g0211411 | 55.556 | 54 | 24 | 0 | 81 | 134 | 140 | 193 | 2.21e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640210 | AT1G68730.1 | 48.125 | 160 | 64 | 5 | 4 | 150 | 17 | 170 | 1.29e-37 | 126 |
| Msa0640210 | AT5G27280.1 | 56.140 | 57 | 25 | 0 | 81 | 137 | 117 | 173 | 3.34e-17 | 75.1 |
Find 33 sgRNAs with CRISPR-Local
Find 430 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAATTATGGAAATAATT+AGG | 0.198007 | 4_3:+38115335 | None:intergenic |
| CATAACGGAGTATGACTTTC+GGG | 0.332036 | 4_3:-38115437 | Msa0640210:CDS |
| CACAAATTAGTTGACAATCT+TGG | 0.332172 | 4_3:-38115463 | Msa0640210:CDS |
| ACTCTAAGCAGTTATTTGTT+TGG | 0.337970 | 4_3:+38115195 | None:intergenic |
| CGCCGAGTACTTAGAGTTCA+TGG | 0.349858 | 4_3:-38121189 | Msa0640210:CDS |
| CACCCCTTTCATAAGCTAAT+CGG | 0.364776 | 4_3:+38119210 | None:intergenic |
| CTTCTATTAAACCCTCTTCC+AGG | 0.390078 | 4_3:-38121260 | Msa0640210:CDS |
| ACAAAGGGAGAGATTAGGTT+GGG | 0.395285 | 4_3:+38121293 | None:intergenic |
| CTCTAAGTACTCGGCGCCGA+TGG | 0.405657 | 4_3:+38121196 | None:intergenic |
| CTGGAAGAGGGTTTAATAGA+AGG | 0.408004 | 4_3:+38121261 | None:intergenic |
| TTGAAACAAAGGGAGAGATT+AGG | 0.436036 | 4_3:+38121288 | None:intergenic |
| TCATAACGGAGTATGACTTT+CGG | 0.437534 | 4_3:-38115438 | Msa0640210:CDS |
| CTTAGAGTTCATGGTTTGCT+TGG | 0.438729 | 4_3:-38121180 | Msa0640210:CDS |
| AGAAGGAGAGTTGAAACAAA+GGG | 0.438968 | 4_3:+38121278 | None:intergenic |
| AGCTTCTCTTACTAGTGTGC+AGG | 0.459435 | 4_3:-38115499 | Msa0640210:intron |
| TAGAAGGAGAGTTGAAACAA+AGG | 0.483634 | 4_3:+38121277 | None:intergenic |
| TGTACAAGCAAACTTCGTCT+TGG | 0.492307 | 4_3:+38119278 | None:intergenic |
| AAACCGATTAGCTTATGAAA+GGG | 0.495176 | 4_3:-38119213 | Msa0640210:CDS |
| TCTAAGTACTCGGCGCCGAT+GGG | 0.500386 | 4_3:+38121197 | None:intergenic |
| GAGGAATAAGTAAAGAGCGT+TGG | 0.512524 | 4_3:+38121336 | None:intergenic |
| TAAACCGATTAGCTTATGAA+AGG | 0.524849 | 4_3:-38119214 | Msa0640210:CDS |
| CAAAGGGAGAGATTAGGTTG+GGG | 0.551203 | 4_3:+38121294 | None:intergenic |
| AAAAGTCTTGACCTGGAAGA+GGG | 0.570341 | 4_3:+38121249 | None:intergenic |
| TGACAATCTTGGACTCATAA+CGG | 0.571059 | 4_3:-38115452 | Msa0640210:CDS |
| TGCCACAAAAGCTTCCCCAT+CGG | 0.579404 | 4_3:-38121212 | Msa0640210:CDS |
| AACCATGAACTCTAAGTACT+CGG | 0.579508 | 4_3:+38121187 | None:intergenic |
| AACAAAGGGAGAGATTAGGT+TGG | 0.585840 | 4_3:+38121292 | None:intergenic |
| ATTATTCAGATCTGTACACC+TGG | 0.594366 | 4_3:-38115246 | Msa0640210:three_prime_UTR |
| AACCGATTAGCTTATGAAAG+GGG | 0.639818 | 4_3:-38119212 | Msa0640210:CDS |
| CTAAGTACTCGGCGCCGATG+GGG | 0.651454 | 4_3:+38121198 | None:intergenic |
| CAATTTACATGTGATTTGTG+CGG | 0.666528 | 4_3:-38119257 | Msa0640210:CDS |
| CTTTCGGGAGAAAACGAACG+CGG | 0.747623 | 4_3:-38115422 | Msa0640210:CDS |
| TGTGCGGTGAAAGAACAGAG+AGG | 0.767727 | 4_3:-38119241 | Msa0640210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | - | chr4_3:38116725-38116744 | Msa0640210:intron | 0.0% |
| !! | TATATATATATATATATATA+GGG | - | chr4_3:38116724-38116743 | Msa0640210:intron | 0.0% |
| !!! | ATGTATATTTTTATAAAAGT+TGG | - | chr4_3:38115768-38115787 | Msa0640210:intron | 10.0% |
| !!! | TGTATATTTTTATAAAAGTT+GGG | - | chr4_3:38115769-38115788 | Msa0640210:intron | 10.0% |
| !! | AATATATCTATAAATTTGTA+TGG | - | chr4_3:38116385-38116404 | Msa0640210:intron | 10.0% |
| !!! | GTTTATTGATTAAATTTTTA+TGG | - | chr4_3:38116666-38116685 | Msa0640210:intron | 10.0% |
| !!! | TAATTATGAATATGAATTTT+GGG | - | chr4_3:38119479-38119498 | Msa0640210:intron | 10.0% |
| !! | TTGTTAGTATTTAATTAAAT+AGG | - | chr4_3:38120018-38120037 | Msa0640210:intron | 10.0% |
| !!! | GTATATTTTTATAAAAGTTG+GGG | - | chr4_3:38115770-38115789 | Msa0640210:intron | 15.0% |
| !!! | TATATTTTTATAAAAGTTGG+GGG | - | chr4_3:38115771-38115790 | Msa0640210:intron | 15.0% |
| !! | ACAAATCTTCTATAAAAATT+TGG | + | chr4_3:38115803-38115822 | None:intergenic | 15.0% |
| !! | TTATATATGTGCTAATTATT+TGG | - | chr4_3:38116093-38116112 | Msa0640210:intron | 15.0% |
| !! | TGAATAAACTATTTATCAAA+CGG | - | chr4_3:38116233-38116252 | Msa0640210:intron | 15.0% |
| !!! | AATTTTGTATAATCGTATAA+TGG | - | chr4_3:38116268-38116287 | Msa0640210:intron | 15.0% |
| !! | ATAACTAAATTAACTTATGT+GGG | - | chr4_3:38116474-38116493 | Msa0640210:intron | 15.0% |
| !! | TATATATAAAGATCAAAAGT+AGG | + | chr4_3:38116712-38116731 | None:intergenic | 15.0% |
| !! | TATTAAAGTGTGAAAAATAA+GGG | + | chr4_3:38118100-38118119 | None:intergenic | 15.0% |
| !! | ACTTTAATAGTGATTATAAA+TGG | - | chr4_3:38118111-38118130 | Msa0640210:intron | 15.0% |
| !!! | GTAATTATGAATATGAATTT+TGG | - | chr4_3:38119478-38119497 | Msa0640210:intron | 15.0% |
| !!! | AATTTATCTTTCTTTTCATT+CGG | + | chr4_3:38120757-38120776 | None:intergenic | 15.0% |
| !! | TTAATTACAGTAAAGAATAA+TGG | + | chr4_3:38120941-38120960 | None:intergenic | 15.0% |
| !! | TTTGAATTATGGAAATAATT+AGG | + | chr4_3:38121133-38121152 | None:intergenic | 15.0% |
| !!! | CTTTCTAAAAAAAATTATCA+TGG | + | chr4_3:38121179-38121198 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAATCATTCC+AGG | + | chr4_3:38121240-38121259 | None:intergenic | 15.0% |
| !! | ATAACATAATTCAGTGTAAT+CGG | + | chr4_3:38115438-38115457 | None:intergenic | 20.0% |
| !! | TTTCAAATTATTAGTTGTGT+CGG | - | chr4_3:38115460-38115479 | Msa0640210:CDS | 20.0% |
| !!! | ATGTGATTTTCACAAATTAT+TGG | - | chr4_3:38115685-38115704 | Msa0640210:intron | 20.0% |
| !! | AAAAATTGTATGTGCTAATT+AGG | - | chr4_3:38116065-38116084 | Msa0640210:intron | 20.0% |
| !! | CATAACTAAATTAACTTATG+TGG | - | chr4_3:38116473-38116492 | Msa0640210:intron | 20.0% |
| !!! | CTTGATAATGGATTAATATT+CGG | + | chr4_3:38116824-38116843 | None:intergenic | 20.0% |
| !! | ATAAAAACTTCACTTGATAA+TGG | + | chr4_3:38116836-38116855 | None:intergenic | 20.0% |
| !! | TACATACATAAGACATAAAA+AGG | + | chr4_3:38116991-38117010 | None:intergenic | 20.0% |
| !!! | ATGTTTTTACACATTTATGA+TGG | - | chr4_3:38117010-38117029 | Msa0640210:intron | 20.0% |
| !! | CAAGAAGATATGATTAATAT+TGG | + | chr4_3:38117049-38117068 | None:intergenic | 20.0% |
| !! | CAATATTAATCATATCTTCT+TGG | - | chr4_3:38117047-38117066 | Msa0640210:intron | 20.0% |
| !! | TATTTATTATACATTGAGTC+CGG | + | chr4_3:38117592-38117611 | None:intergenic | 20.0% |
| !! | ACATAACATGTAGTTAATTA+TGG | - | chr4_3:38117792-38117811 | Msa0640210:intron | 20.0% |
| !! | ATATAAATATCAGATTGTTG+AGG | - | chr4_3:38117820-38117839 | Msa0640210:intron | 20.0% |
| !! | TATAAATATCAGATTGTTGA+GGG | - | chr4_3:38117821-38117840 | Msa0640210:intron | 20.0% |
| !! | CTATTAAGAGATTAATTAGT+CGG | + | chr4_3:38117958-38117977 | None:intergenic | 20.0% |
| !! | ATTAAAGTGTGAAAAATAAG+GGG | + | chr4_3:38118099-38118118 | None:intergenic | 20.0% |
| !! | CTATTAAAGTGTGAAAAATA+AGG | + | chr4_3:38118101-38118120 | None:intergenic | 20.0% |
| !! | TGATAACCATCTAAAAATTT+AGG | + | chr4_3:38118189-38118208 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTTTTGTCATTCA+TGG | + | chr4_3:38118766-38118785 | None:intergenic | 20.0% |
| !! | AATTTATTCTACTCTATTTC+GGG | + | chr4_3:38118820-38118839 | None:intergenic | 20.0% |
| !! | CAATTTATTCTACTCTATTT+CGG | + | chr4_3:38118821-38118840 | None:intergenic | 20.0% |
| !! | CTAGCTACATTAAATAAAAA+GGG | + | chr4_3:38119921-38119940 | None:intergenic | 20.0% |
| !! | ACTAGCTACATTAAATAAAA+AGG | + | chr4_3:38119922-38119941 | None:intergenic | 20.0% |
| !!! | AGTTAATTTTGTTCTTAAAC+AGG | + | chr4_3:38120407-38120426 | None:intergenic | 20.0% |
| !!! | TTTTCAGAGAAAACAAAAAT+GGG | + | chr4_3:38120455-38120474 | None:intergenic | 20.0% |
| !!! | ATTTTCAGAGAAAACAAAAA+TGG | + | chr4_3:38120456-38120475 | None:intergenic | 20.0% |
| !!! | ATTCTCACATGATTTTATTT+TGG | - | chr4_3:38120774-38120793 | Msa0640210:intron | 20.0% |
| !! | GTTCAATAAAATTCATTGAA+TGG | - | chr4_3:38120833-38120852 | Msa0640210:intron | 20.0% |
| !! | GATATAAAAACTGAATTTAC+TGG | + | chr4_3:38121331-38121350 | None:intergenic | 20.0% |
| ! | TTGAAAAAAAGGAATAAGCA+AGG | - | chr4_3:38115955-38115974 | Msa0640210:intron | 25.0% |
| !! | TATCGTTTAGGATTTAAAAC+TGG | - | chr4_3:38116208-38116227 | Msa0640210:intron | 25.0% |
| ! | GACATAAAAAGGAAAATGAT+TGG | + | chr4_3:38116980-38116999 | None:intergenic | 25.0% |
| ! | GAATACAACATTAAAAGACA+AGG | + | chr4_3:38117388-38117407 | None:intergenic | 25.0% |
| ! | CACTACCAAAAAAAAAAAAC+AGG | + | chr4_3:38117537-38117556 | None:intergenic | 25.0% |
| ! | ATGTTTAGATTCATGTATTC+AGG | - | chr4_3:38117738-38117757 | Msa0640210:intron | 25.0% |
| ! | TGTTTAGATTCATGTATTCA+GGG | - | chr4_3:38117739-38117758 | Msa0640210:intron | 25.0% |
| ! | AACTACATGTTATGTTTACA+AGG | + | chr4_3:38117787-38117806 | None:intergenic | 25.0% |
| ! | TGGTTTATGATAGAACATTA+TGG | + | chr4_3:38117926-38117945 | None:intergenic | 25.0% |
| ! | TTAAAGTGTGAAAAATAAGG+GGG | + | chr4_3:38118098-38118117 | None:intergenic | 25.0% |
| ! | TCAATCCACAAAAAATTGTA+AGG | + | chr4_3:38118150-38118169 | None:intergenic | 25.0% |
| !!! | AATTTTTTGTGGATTGAGTT+AGG | - | chr4_3:38118153-38118172 | Msa0640210:intron | 25.0% |
| !!! | GTCTAACCTAAATTTTTAGA+TGG | - | chr4_3:38118180-38118199 | Msa0640210:intron | 25.0% |
| ! | AAAGTCTATCATAGATATGT+TGG | - | chr4_3:38118208-38118227 | Msa0640210:intron | 25.0% |
| ! | ACACAAAAACTCTTAGAATT+GGG | + | chr4_3:38118401-38118420 | None:intergenic | 25.0% |
| !! | TGTTAAAGAGTGTACTTAAT+AGG | + | chr4_3:38118492-38118511 | None:intergenic | 25.0% |
| ! | TCGTAAAAATTGTATCCAAT+AGG | + | chr4_3:38118558-38118577 | None:intergenic | 25.0% |
| ! | TATTTGCACTTAACATTTCT+TGG | - | chr4_3:38118578-38118597 | Msa0640210:intron | 25.0% |
| !! | AAAATATTGCCTATTTTCCT+TGG | + | chr4_3:38119052-38119071 | None:intergenic | 25.0% |
| !! | GTCCAACTTAACAATTTTAT+GGG | + | chr4_3:38119076-38119095 | None:intergenic | 25.0% |
| !! | AGTCCAACTTAACAATTTTA+TGG | + | chr4_3:38119077-38119096 | None:intergenic | 25.0% |
| ! | TTAATTACTTAAAGCTGTAG+AGG | - | chr4_3:38119395-38119414 | Msa0640210:intron | 25.0% |
| !! | TTTGTTTCCTTGAATTTTGT+TGG | - | chr4_3:38119427-38119446 | Msa0640210:intron | 25.0% |
| ! | CGAGAAAATGAAACAAATTT+AGG | + | chr4_3:38119562-38119581 | None:intergenic | 25.0% |
| ! | ATATTTAATGTAGCTAGTTG+AGG | - | chr4_3:38119725-38119744 | Msa0640210:intron | 25.0% |
| ! | TATTTAATGTAGCTAGTTGA+GGG | - | chr4_3:38119726-38119745 | Msa0640210:intron | 25.0% |
| ! | AGTAAAAAAAGAACTTTAGC+AGG | + | chr4_3:38119965-38119984 | None:intergenic | 25.0% |
| !! | ATTTGTTGAATGAGAGAAAA+AGG | + | chr4_3:38120128-38120147 | None:intergenic | 25.0% |
| ! | AGGGAATATAAATAAAGAGA+AGG | + | chr4_3:38120282-38120301 | None:intergenic | 25.0% |
| ! | AAATTAACTAGTCAAATTCC+AGG | - | chr4_3:38120418-38120437 | Msa0640210:intron | 25.0% |
| ! | ACAAGTTAACAATTAGTGAA+AGG | + | chr4_3:38120526-38120545 | None:intergenic | 25.0% |
| ! | ATGCTACATACACAAAAATA+GGG | + | chr4_3:38120559-38120578 | None:intergenic | 25.0% |
| ! | TATGCTACATACACAAAAAT+AGG | + | chr4_3:38120560-38120579 | None:intergenic | 25.0% |
| ! | TATATTCCCAAGTACAAAAT+CGG | - | chr4_3:38120643-38120662 | Msa0640210:intron | 25.0% |
| !! | TCATTGAATGGTTGAATTTT+AGG | - | chr4_3:38120845-38120864 | Msa0640210:intron | 25.0% |
| !! | AGATGTGATCTTTTGAATTA+TGG | + | chr4_3:38121144-38121163 | None:intergenic | 25.0% |
| !! | CTCTTTTGTTGGTCATTTTA+TGG | - | chr4_3:38115544-38115563 | Msa0640210:intron | 30.0% |
| !! | GGTCATTTTATGGTATTTTC+TGG | - | chr4_3:38115554-38115573 | Msa0640210:intron | 30.0% |
| ! | CATTTTATGGTATTTTCTGG+TGG | - | chr4_3:38115557-38115576 | Msa0640210:intron | 30.0% |
| !!! | TTTCTGGTGGAATGATTTTT+TGG | - | chr4_3:38115570-38115589 | Msa0640210:intron | 30.0% |
| AAAACTCTATATTTGCGAGT+CGG | - | chr4_3:38115911-38115930 | Msa0640210:intron | 30.0% | |
| AATACAAAACTCTCAGCATT+TGG | - | chr4_3:38116034-38116053 | Msa0640210:intron | 30.0% | |
| ATACAAAACTCTCAGCATTT+GGG | - | chr4_3:38116035-38116054 | Msa0640210:intron | 30.0% | |
| CAACTTATGCAGAAAGTAAT+AGG | + | chr4_3:38116309-38116328 | None:intergenic | 30.0% | |
| TTATGACCATAAGTTCTGTT+TGG | + | chr4_3:38116458-38116477 | None:intergenic | 30.0% | |
| TTGAAGGAAAAGTTAGATGA+AGG | + | chr4_3:38116518-38116537 | None:intergenic | 30.0% | |
| ! | CTTTTCCTTCAATGAACTTT+AGG | - | chr4_3:38116526-38116545 | Msa0640210:intron | 30.0% |
| AAGAAAGAAGTAATCCAACA+TGG | - | chr4_3:38116592-38116611 | Msa0640210:intron | 30.0% | |
| AGAAAGAAGTAATCCAACAT+GGG | - | chr4_3:38116593-38116612 | Msa0640210:intron | 30.0% | |
| AGATGTTGACATTGTTTGAT+TGG | - | chr4_3:38116620-38116639 | Msa0640210:intron | 30.0% | |
| TAAAGATCAAAAGTAGGACA+GGG | + | chr4_3:38116706-38116725 | None:intergenic | 30.0% | |
| ATAAAGATCAAAAGTAGGAC+AGG | + | chr4_3:38116707-38116726 | None:intergenic | 30.0% | |
| !! | GATAATGGATTAATATTCGG+AGG | + | chr4_3:38116821-38116840 | None:intergenic | 30.0% |
| ATGCTGAGATCATAAATCTT+TGG | + | chr4_3:38117120-38117139 | None:intergenic | 30.0% | |
| TATTATACTTTGCACATGCA+GGG | - | chr4_3:38117142-38117161 | Msa0640210:intron | 30.0% | |
| ! | CAATTTACATGTGATTTGTG+CGG | - | chr4_3:38117208-38117227 | Msa0640210:intron | 30.0% |
| !! | TAAACCGATTAGCTTATGAA+AGG | - | chr4_3:38117251-38117270 | Msa0640210:intron | 30.0% |
| !! | AAACCGATTAGCTTATGAAA+GGG | - | chr4_3:38117252-38117271 | Msa0640210:intron | 30.0% |
| GATAGATACCTGTACAAAAA+CGG | + | chr4_3:38117281-38117300 | None:intergenic | 30.0% | |
| TAGACATAGATATTCACTAC+AGG | + | chr4_3:38117315-38117334 | None:intergenic | 30.0% | |
| TAGTTATTACAAGTGTCAAG+TGG | - | chr4_3:38117491-38117510 | Msa0640210:intron | 30.0% | |
| !!! | ACGAGCCTGTTTTTTTTTTT+TGG | - | chr4_3:38117529-38117548 | Msa0640210:intron | 30.0% |
| TAATTAGTCGGATCGAAATA+TGG | + | chr4_3:38117946-38117965 | None:intergenic | 30.0% | |
| TAAAGAACTCTGTTGTAGTA+AGG | + | chr4_3:38118051-38118070 | None:intergenic | 30.0% | |
| !!! | TCTGACCTTACAATTTTTTG+TGG | - | chr4_3:38118142-38118161 | Msa0640210:intron | 30.0% |
| AAAACCAGTTTATCAGGTAA+GGG | + | chr4_3:38118365-38118384 | None:intergenic | 30.0% | |
| AAAAACCAGTTTATCAGGTA+AGG | + | chr4_3:38118366-38118385 | None:intergenic | 30.0% | |
| !!! | TACCTGATAAACTGGTTTTT+TGG | - | chr4_3:38118366-38118385 | Msa0640210:intron | 30.0% |
| !!! | ACCTGATAAACTGGTTTTTT+GGG | - | chr4_3:38118367-38118386 | Msa0640210:intron | 30.0% |
| CACACAAAAACTCTTAGAAT+TGG | + | chr4_3:38118402-38118421 | None:intergenic | 30.0% | |
| !! | CAATTCTAAGAGTTTTTGTG+TGG | - | chr4_3:38118400-38118419 | Msa0640210:intron | 30.0% |
| ! | AGCTCTTTAACTTAGTAAAG+TGG | - | chr4_3:38118433-38118452 | Msa0640210:intron | 30.0% |
| ! | GCTCTTTAACTTAGTAAAGT+GGG | - | chr4_3:38118434-38118453 | Msa0640210:intron | 30.0% |
| TTAACTTAGTAAAGTGGGAT+AGG | - | chr4_3:38118439-38118458 | Msa0640210:intron | 30.0% | |
| TAACTTAGTAAAGTGGGATA+GGG | - | chr4_3:38118440-38118459 | Msa0640210:intron | 30.0% | |
| TTAAATCGATAAACGCCTAT+TGG | - | chr4_3:38118540-38118559 | Msa0640210:intron | 30.0% | |
| !!! | TTTTGACCAGAAGCATTTAT+TGG | - | chr4_3:38118644-38118663 | Msa0640210:intron | 30.0% |
| AATCTTCCAATAAATGCTTC+TGG | + | chr4_3:38118653-38118672 | None:intergenic | 30.0% | |
| TGCCCATAAAATTGTTAAGT+TGG | - | chr4_3:38119071-38119090 | Msa0640210:intron | 30.0% | |
| AGTGATACCAACAAAATTCA+AGG | + | chr4_3:38119437-38119456 | None:intergenic | 30.0% | |
| !! | TGCTACATGTGCTTTTAAAA+GGG | + | chr4_3:38119666-38119685 | None:intergenic | 30.0% |
| ATTTAATGTAGCTAGTTGAG+GGG | - | chr4_3:38119727-38119746 | Msa0640210:intron | 30.0% | |
| ATTAAATAAAAAGGGCAACC+CGG | + | chr4_3:38119913-38119932 | None:intergenic | 30.0% | |
| TTTCTCTTAATTGCATGTGA+GGG | + | chr4_3:38120301-38120320 | None:intergenic | 30.0% | |
| ATTTCTCTTAATTGCATGTG+AGG | + | chr4_3:38120302-38120321 | None:intergenic | 30.0% | |
| !!! | AAATGGGTTGTTTTAAAACC+TGG | + | chr4_3:38120439-38120458 | None:intergenic | 30.0% |
| !! | GTTTTCTCTGAAAATAGTCA+TGG | - | chr4_3:38120461-38120480 | Msa0640210:intron | 30.0% |
| TTAGTGAAAGGTTAATGTAC+TGG | + | chr4_3:38120514-38120533 | None:intergenic | 30.0% | |
| ACATACACAAAAATAGGGAA+TGG | + | chr4_3:38120554-38120573 | None:intergenic | 30.0% | |
| ! | TGAGAGAACAAATTTTTGTC+TGG | - | chr4_3:38120605-38120624 | Msa0640210:intron | 30.0% |
| !! | TAGTAACCGATTTTGTACTT+GGG | + | chr4_3:38120652-38120671 | None:intergenic | 30.0% |
| ! | TTGTCCTTTATCTTTCCTTT+TGG | - | chr4_3:38120884-38120903 | Msa0640210:intron | 30.0% |
| TTAGCCAAAAGGAAAGATAA+AGG | + | chr4_3:38120891-38120910 | None:intergenic | 30.0% | |
| AAAAACCATACTTAGCCAAA+AGG | + | chr4_3:38120902-38120921 | None:intergenic | 30.0% | |
| ! | TTTGGCTAAGTATGGTTTTT+AGG | - | chr4_3:38120902-38120921 | Msa0640210:intron | 30.0% |
| ! | AAAGAATAATGGAATGCGTA+AGG | + | chr4_3:38120930-38120949 | None:intergenic | 30.0% |
| CACAAATTAGTTGACAATCT+TGG | - | chr4_3:38121002-38121021 | Msa0640210:intron | 30.0% | |
| ACTCTAAGCAGTTATTTGTT+TGG | + | chr4_3:38121273-38121292 | None:intergenic | 30.0% | |
| !!! | TTTTTTGTATGCAGAGGAAG+AGG | + | chr4_3:38115151-38115170 | None:intergenic | 35.0% |
| TTGAAACAAAGGGAGAGATT+AGG | + | chr4_3:38115180-38115199 | None:intergenic | 35.0% | |
| AGAAGGAGAGTTGAAACAAA+GGG | + | chr4_3:38115190-38115209 | None:intergenic | 35.0% | |
| TAGAAGGAGAGTTGAAACAA+AGG | + | chr4_3:38115191-38115210 | None:intergenic | 35.0% | |
| AACCATGAACTCTAAGTACT+CGG | + | chr4_3:38115281-38115300 | None:intergenic | 35.0% | |
| ! | AAGTGGTTGATTCTGGTAAA+GGG | + | chr4_3:38115329-38115348 | None:intergenic | 35.0% |
| ! | ATAGTTAGCGTCTCTTTTGT+TGG | - | chr4_3:38115533-38115552 | Msa0640210:intron | 35.0% |
| AAGCAAGGTGAAAGAATTAG+AGG | - | chr4_3:38115970-38115989 | Msa0640210:intron | 35.0% | |
| TACAAAACTCTCAGCATTTG+GGG | - | chr4_3:38116036-38116055 | Msa0640210:intron | 35.0% | |
| ACTATTTATCAAACGGTTGC+AGG | - | chr4_3:38116240-38116259 | Msa0640210:intron | 35.0% | |
| TTAAGAACCCTAAACCCATA+AGG | - | chr4_3:38116421-38116440 | Msa0640210:intron | 35.0% | |
| ACCATAAGTTCTGTTTGGAT+TGG | + | chr4_3:38116453-38116472 | None:intergenic | 35.0% | |
| ACTTGCCTAAAGTTCATTGA+AGG | + | chr4_3:38116534-38116553 | None:intergenic | 35.0% | |
| !! | GACATTGTTTGATTGGTCTT+CGG | - | chr4_3:38116627-38116646 | Msa0640210:intron | 35.0% |
| CTTCGGTCACTCAAAATAAT+TGG | - | chr4_3:38116644-38116663 | Msa0640210:intron | 35.0% | |
| TAACCATTACTTACTCCTCT+AGG | + | chr4_3:38116909-38116928 | None:intergenic | 35.0% | |
| AGAGGAGTAAGTAATGGTTA+TGG | - | chr4_3:38116909-38116928 | Msa0640210:intron | 35.0% | |
| CTTGAACATAAGATGATGAC+TGG | + | chr4_3:38117085-38117104 | None:intergenic | 35.0% | |
| CTATTATACTTTGCACATGC+AGG | - | chr4_3:38117141-38117160 | Msa0640210:intron | 35.0% | |
| !! | AACCGATTAGCTTATGAAAG+GGG | - | chr4_3:38117253-38117272 | Msa0640210:intron | 35.0% |
| ! | TTTGTGGATTGAGTTAGGTT+AGG | - | chr4_3:38118158-38118177 | Msa0640210:intron | 35.0% |
| ATATCTAGTCCTTTGCGTAA+GGG | - | chr4_3:38118278-38118297 | Msa0640210:intron | 35.0% | |
| TCATATCACTATCTACTGTG+AGG | + | chr4_3:38118316-38118335 | None:intergenic | 35.0% | |
| AGATAGTGATATGACCTGAA+TGG | - | chr4_3:38118322-38118341 | Msa0640210:intron | 35.0% | |
| ACCCAAAAAACCAGTTTATC+AGG | + | chr4_3:38118371-38118390 | None:intergenic | 35.0% | |
| ! | AGTTTTTGTGTGGTCAAGAT+AGG | - | chr4_3:38118410-38118429 | Msa0640210:intron | 35.0% |
| AAATGCTTCTGGTCAAAAAC+AGG | + | chr4_3:38118642-38118661 | None:intergenic | 35.0% | |
| GAGATTCAAATGCAACTGTT+GGG | + | chr4_3:38118691-38118710 | None:intergenic | 35.0% | |
| AGAGATTCAAATGCAACTGT+TGG | + | chr4_3:38118692-38118711 | None:intergenic | 35.0% | |
| TTGCATTTGAATCTCTTAGC+AGG | - | chr4_3:38118696-38118715 | Msa0640210:intron | 35.0% | |
| ! | TTTTTGTCATTCATGGCTTG+TGG | + | chr4_3:38118759-38118778 | None:intergenic | 35.0% |
| ATAGAACTTGGGTGCATTAT+GGG | - | chr4_3:38118959-38118978 | Msa0640210:intron | 35.0% | |
| !!! | GGCTTTAGCTCTTTTTGTTT+GGG | - | chr4_3:38118980-38118999 | Msa0640210:intron | 35.0% |
| !!! | GCTTTAGCTCTTTTTGTTTG+GGG | - | chr4_3:38118981-38119000 | Msa0640210:intron | 35.0% |
| TTGGGGATGTTTAATTAGTC+AGG | - | chr4_3:38118998-38119017 | Msa0640210:intron | 35.0% | |
| TTTCCTTGGACATAGGATAT+GGG | + | chr4_3:38119038-38119057 | None:intergenic | 35.0% | |
| ! | TTTTCCTTGGACATAGGATA+TGG | + | chr4_3:38119039-38119058 | None:intergenic | 35.0% |
| ATCCTATGTCCAAGGAAAAT+AGG | - | chr4_3:38119040-38119059 | Msa0640210:intron | 35.0% | |
| CGGAAATAGAGTTCTTAATC+TGG | + | chr4_3:38119138-38119157 | None:intergenic | 35.0% | |
| GAAACTAGAGGAAAATTGTG+TGG | + | chr4_3:38119184-38119203 | None:intergenic | 35.0% | |
| ACAGTGAAACAGAAACTGAA+GGG | + | chr4_3:38119327-38119346 | None:intergenic | 35.0% | |
| AATGTCTATGTTGTCAGTCT+TGG | + | chr4_3:38119623-38119642 | None:intergenic | 35.0% | |
| AAGACTGACAACATAGACAT+TGG | - | chr4_3:38119622-38119641 | Msa0640210:intron | 35.0% | |
| TGACAACATAGACATTGGAT+AGG | - | chr4_3:38119627-38119646 | Msa0640210:intron | 35.0% | |
| TAGACATTGGATAGGAGAAT+AGG | - | chr4_3:38119635-38119654 | Msa0640210:intron | 35.0% | |
| AGACATTGGATAGGAGAATA+GGG | - | chr4_3:38119636-38119655 | Msa0640210:intron | 35.0% | |
| ! | GTGCTACATGTGCTTTTAAA+AGG | + | chr4_3:38119667-38119686 | None:intergenic | 35.0% |
| ! | TTTAAAAGCACATGTAGCAC+AGG | - | chr4_3:38119667-38119686 | Msa0640210:intron | 35.0% |
| ! | TTAATGTAGCTAGTTCTTGC+TGG | - | chr4_3:38119928-38119947 | Msa0640210:intron | 35.0% |
| ACTTATTCAGCTATGTAGCT+AGG | - | chr4_3:38119982-38120001 | Msa0640210:intron | 35.0% | |
| CTTATTCAGCTATGTAGCTA+GGG | - | chr4_3:38119983-38120002 | Msa0640210:intron | 35.0% | |
| ! | GTTGTTGATGAGTACTTGAA+TGG | - | chr4_3:38120365-38120384 | Msa0640210:intron | 35.0% |
| ! | TCTCTGAAAATAGTCATGGA+TGG | - | chr4_3:38120465-38120484 | Msa0640210:intron | 35.0% |
| !! | CTAGTAACCGATTTTGTACT+TGG | + | chr4_3:38120653-38120672 | None:intergenic | 35.0% |
| !! | TCTTTCCTTTTGGCTAAGTA+TGG | - | chr4_3:38120894-38120913 | Msa0640210:intron | 35.0% |
| TGACAATCTTGGACTCATAA+CGG | - | chr4_3:38121013-38121032 | Msa0640210:intron | 35.0% | |
| ! | TCATAACGGAGTATGACTTT+CGG | - | chr4_3:38121027-38121046 | Msa0640210:intron | 35.0% |
| ATTATTCAGATCTGTACACC+TGG | - | chr4_3:38121219-38121238 | Msa0640210:CDS | 35.0% | |
| ! | GAGGAATAAGTAAAGAGCGT+TGG | + | chr4_3:38115132-38115151 | None:intergenic | 40.0% |
| !!! | TTGGGGTTTTTTGTATGCAG+AGG | + | chr4_3:38115157-38115176 | None:intergenic | 40.0% |
| ACAAAGGGAGAGATTAGGTT+GGG | + | chr4_3:38115175-38115194 | None:intergenic | 40.0% | |
| AACAAAGGGAGAGATTAGGT+TGG | + | chr4_3:38115176-38115195 | None:intergenic | 40.0% | |
| CTGGAAGAGGGTTTAATAGA+AGG | + | chr4_3:38115207-38115226 | None:intergenic | 40.0% | |
| CTTCTATTAAACCCTCTTCC+AGG | - | chr4_3:38115205-38115224 | Msa0640210:three_prime_UTR | 40.0% | |
| AAAAGTCTTGACCTGGAAGA+GGG | + | chr4_3:38115219-38115238 | None:intergenic | 40.0% | |
| AAAAAGTCTTGACCTGGAAG+AGG | + | chr4_3:38115220-38115239 | None:intergenic | 40.0% | |
| ! | AAGCTTTTGTGGCAAAATCG+CGG | + | chr4_3:38115247-38115266 | None:intergenic | 40.0% |
| !! | CTTAGAGTTCATGGTTTGCT+TGG | - | chr4_3:38115285-38115304 | Msa0640210:three_prime_UTR | 40.0% |
| ! | AGTGGTTGATTCTGGTAAAG+GGG | + | chr4_3:38115328-38115347 | None:intergenic | 40.0% |
| ! | GAAGTGGTTGATTCTGGTAA+AGG | + | chr4_3:38115330-38115349 | None:intergenic | 40.0% |
| AGAATCAACCACTTCTCAAC+CGG | - | chr4_3:38115335-38115354 | Msa0640210:three_prime_UTR | 40.0% | |
| !! | TCTCAACCGGTTAGTCATTT+TGG | - | chr4_3:38115348-38115367 | Msa0640210:three_prime_UTR | 40.0% |
| CTAACTATGAAGCACGGATA+CGG | + | chr4_3:38115521-38115540 | None:intergenic | 40.0% | |
| ACAAAACTCTCAGCATTTGG+GGG | - | chr4_3:38116037-38116056 | Msa0640210:intron | 40.0% | |
| TACAAACACCAGTCTACAGA+CGG | + | chr4_3:38116168-38116187 | None:intergenic | 40.0% | |
| GACGCAAACTGATATCGTTT+AGG | - | chr4_3:38116196-38116215 | Msa0640210:intron | 40.0% | |
| ! | GCTTTTGCCTTATGGGTTTA+GGG | + | chr4_3:38116431-38116450 | None:intergenic | 40.0% |
| !!! | TGGATTGGCTTTTGCCTTAT+GGG | + | chr4_3:38116438-38116457 | None:intergenic | 40.0% |
| !!! | TTGGATTGGCTTTTGCCTTA+TGG | + | chr4_3:38116439-38116458 | None:intergenic | 40.0% |
| GCCAATCCAAACAGAACTTA+TGG | - | chr4_3:38116449-38116468 | Msa0640210:intron | 40.0% | |
| TTACAGAAGCTTCTCAACTG+AGG | + | chr4_3:38116574-38116593 | None:intergenic | 40.0% | |
| ! | TCAACATCTAAGACCCATGT+TGG | + | chr4_3:38116609-38116628 | None:intergenic | 40.0% |
| TGTACAAGCAAACTTCGTCT+TGG | + | chr4_3:38117190-38117209 | None:intergenic | 40.0% | |
| CACCCCTTTCATAAGCTAAT+CGG | + | chr4_3:38117258-38117277 | None:intergenic | 40.0% | |
| AGCCATGTCACTATCTAGTA+GGG | + | chr4_3:38117467-38117486 | None:intergenic | 40.0% | |
| AAGCCATGTCACTATCTAGT+AGG | + | chr4_3:38117468-38117487 | None:intergenic | 40.0% | |
| AAAAAAACAGGCTCGTGAGA+TGG | + | chr4_3:38117525-38117544 | None:intergenic | 40.0% | |
| ! | TGACTCAACGGATCTAGAAT+AGG | + | chr4_3:38117621-38117640 | None:intergenic | 40.0% |
| TGAAACATTACCCCTGATAC+TGG | + | chr4_3:38117645-38117664 | None:intergenic | 40.0% | |
| TGTTTCATATGTCCAATCCG+AGG | - | chr4_3:38117658-38117677 | Msa0640210:intron | 40.0% | |
| TGTGTAGAGTCATGCATTGA+TGG | - | chr4_3:38117694-38117713 | Msa0640210:intron | 40.0% | |
| CAAACCTTATCCCACTAAGT+GGG | - | chr4_3:38117876-38117895 | Msa0640210:intron | 40.0% | |
| AAACCTTATCCCACTAAGTG+GGG | - | chr4_3:38117877-38117896 | Msa0640210:intron | 40.0% | |
| AGTCAGATCACTAGAGATAG+AGG | + | chr4_3:38118007-38118026 | None:intergenic | 40.0% | |
| !! | ATGTTGGTTCATCCATTGTC+AGG | - | chr4_3:38118224-38118243 | Msa0640210:intron | 40.0% |
| CGCAAAGGACTAGATATCTA+GGG | + | chr4_3:38118275-38118294 | None:intergenic | 40.0% | |
| ACGCAAAGGACTAGATATCT+AGG | + | chr4_3:38118276-38118295 | None:intergenic | 40.0% | |
| GATATCTAGTCCTTTGCGTA+AGG | - | chr4_3:38118277-38118296 | Msa0640210:intron | 40.0% | |
| TATCTAGTCCTTTGCGTAAG+GGG | - | chr4_3:38118279-38118298 | Msa0640210:intron | 40.0% | |
| ACCTGAATGGTGATACAAGT+GGG | - | chr4_3:38118335-38118354 | Msa0640210:intron | 40.0% | |
| CAACATGGTATTTGTGTGGA+TGG | + | chr4_3:38118608-38118627 | None:intergenic | 40.0% | |
| ATGGCAACATGGTATTTGTG+TGG | + | chr4_3:38118612-38118631 | None:intergenic | 40.0% | |
| TCTGGTCAAAAACAGGATGT+GGG | + | chr4_3:38118635-38118654 | None:intergenic | 40.0% | |
| TTCTGGTCAAAAACAGGATG+TGG | + | chr4_3:38118636-38118655 | None:intergenic | 40.0% | |
| !! | AGGCATTGGTACAAGTAGTA+AGG | + | chr4_3:38118724-38118743 | None:intergenic | 40.0% |
| ! | TACTCTATTTCGGGTCTGTT+TGG | + | chr4_3:38118811-38118830 | None:intergenic | 40.0% |
| TATCTGTCTCACTCAGTCTA+GGG | + | chr4_3:38118942-38118961 | None:intergenic | 40.0% | |
| TGAGTGAGACAGATAGAACT+TGG | - | chr4_3:38118947-38118966 | Msa0640210:intron | 40.0% | |
| GAGTGAGACAGATAGAACTT+GGG | - | chr4_3:38118948-38118967 | Msa0640210:intron | 40.0% | |
| GATAGAACTTGGGTGCATTA+TGG | - | chr4_3:38118958-38118977 | Msa0640210:intron | 40.0% | |
| !!! | GGGCTTTAGCTCTTTTTGTT+TGG | - | chr4_3:38118979-38118998 | Msa0640210:intron | 40.0% |
| ! | TGCCTATTTTCCTTGGACAT+AGG | + | chr4_3:38119045-38119064 | None:intergenic | 40.0% |
| TTTGCACTGAAGAGAAGACT+CGG | + | chr4_3:38119158-38119177 | None:intergenic | 40.0% | |
| CGGTAAAGTCAAGAAACTAG+AGG | + | chr4_3:38119196-38119215 | None:intergenic | 40.0% | |
| CAAATAGAAACAGAGGGGTT+GGG | + | chr4_3:38119301-38119320 | None:intergenic | 40.0% | |
| ACAAATAGAAACAGAGGGGT+TGG | + | chr4_3:38119302-38119321 | None:intergenic | 40.0% | |
| GGAGACAAATAGAAACAGAG+GGG | + | chr4_3:38119306-38119325 | None:intergenic | 40.0% | |
| GGGAGACAAATAGAAACAGA+GGG | + | chr4_3:38119307-38119326 | None:intergenic | 40.0% | |
| AGGGAGACAAATAGAAACAG+AGG | + | chr4_3:38119308-38119327 | None:intergenic | 40.0% | |
| CACAGTGAAACAGAAACTGA+AGG | + | chr4_3:38119328-38119347 | None:intergenic | 40.0% | |
| CTTCAGTTTCTGTTTCACTG+TGG | - | chr4_3:38119326-38119345 | Msa0640210:intron | 40.0% | |
| ATGTTGTCAGTCTTGGATAG+AGG | + | chr4_3:38119616-38119635 | None:intergenic | 40.0% | |
| GTTGTTGTCATGTGACTGAA+AGG | - | chr4_3:38119772-38119791 | Msa0640210:intron | 40.0% | |
| AACAGCCTCTTGTGTAAAAC+AGG | - | chr4_3:38119815-38119834 | Msa0640210:intron | 40.0% | |
| ACAGCCTCTTGTGTAAAACA+GGG | - | chr4_3:38119816-38119835 | Msa0640210:intron | 40.0% | |
| ! | CTTACCCTGTTTTACACAAG+AGG | + | chr4_3:38119823-38119842 | None:intergenic | 40.0% |
| CTCTTGTGTAAAACAGGGTA+AGG | - | chr4_3:38119821-38119840 | Msa0640210:intron | 40.0% | |
| CGTACAATACACCAATTGGT+GGG | - | chr4_3:38119847-38119866 | Msa0640210:intron | 40.0% | |
| TACTAGATTGCTTTGCATGC+TGG | - | chr4_3:38120667-38120686 | Msa0640210:intron | 40.0% | |
| ! | CATAACGGAGTATGACTTTC+GGG | - | chr4_3:38121028-38121047 | Msa0640210:intron | 40.0% |
| ! | CAAAGGGAGAGATTAGGTTG+GGG | + | chr4_3:38115174-38115193 | None:intergenic | 45.0% |
| GGCAACAAAAAGTCTTGACC+TGG | + | chr4_3:38115226-38115245 | None:intergenic | 45.0% | |
| ! | GGTTGAGAAGTGGTTGATTC+TGG | + | chr4_3:38115336-38115355 | None:intergenic | 45.0% |
| ATGACTAACCGGTTGAGAAG+TGG | + | chr4_3:38115346-38115365 | None:intergenic | 45.0% | |
| CAGGGACCAAAATGACTAAC+CGG | + | chr4_3:38115357-38115376 | None:intergenic | 45.0% | |
| TCCCTGAATGAACACAAGCA+CGG | - | chr4_3:38115371-38115390 | Msa0640210:three_prime_UTR | 45.0% | |
| TCCGTGCTTGTGTTCATTCA+GGG | + | chr4_3:38115375-38115394 | None:intergenic | 45.0% | |
| CAGTGTAATCGGACATGTGT+CGG | + | chr4_3:38115427-38115446 | None:intergenic | 45.0% | |
| GAGACGCTAACTATGAAGCA+CGG | + | chr4_3:38115527-38115546 | None:intergenic | 45.0% | |
| ACAAAGACACGCCTAATCTG+AGG | + | chr4_3:38115620-38115639 | None:intergenic | 45.0% | |
| GAAAGAACTGTGAGAGCAGT+CGG | - | chr4_3:38115867-38115886 | Msa0640210:intron | 45.0% | |
| AGAGCAGTCGGTAGAGAATA+CGG | - | chr4_3:38115879-38115898 | Msa0640210:intron | 45.0% | |
| ACTCTATATTTGCGAGTCGG+AGG | - | chr4_3:38115914-38115933 | Msa0640210:intron | 45.0% | |
| CTCTATATTTGCGAGTCGGA+GGG | - | chr4_3:38115915-38115934 | Msa0640210:intron | 45.0% | |
| TCTATATTTGCGAGTCGGAG+GGG | - | chr4_3:38115916-38115935 | Msa0640210:intron | 45.0% | |
| AGGGGAGGGACTTGAAAAAA+AGG | - | chr4_3:38115944-38115963 | Msa0640210:intron | 45.0% | |
| TTAGAGGACAATGAGAGCAG+AGG | - | chr4_3:38115986-38116005 | Msa0640210:intron | 45.0% | |
| TAGAGGACAATGAGAGCAGA+GGG | - | chr4_3:38115987-38116006 | Msa0640210:intron | 45.0% | |
| ! | ACAATGAGAGCAGAGGGTTT+TGG | - | chr4_3:38115993-38116012 | Msa0640210:intron | 45.0% |
| ! | CAATGAGAGCAGAGGGTTTT+GGG | - | chr4_3:38115994-38116013 | Msa0640210:intron | 45.0% |
| ! | AATGAGAGCAGAGGGTTTTG+GGG | - | chr4_3:38115995-38116014 | Msa0640210:intron | 45.0% |
| ! | GGCTTTTGCCTTATGGGTTT+AGG | + | chr4_3:38116432-38116451 | None:intergenic | 45.0% |
| TCTCAACTGAGGTGAGTGTT+TGG | + | chr4_3:38116563-38116582 | None:intergenic | 45.0% | |
| TATCTCATTTCGCCTCCTAG+AGG | - | chr4_3:38116891-38116910 | Msa0640210:intron | 45.0% | |
| CCATTACTTACTCCTCTAGG+AGG | + | chr4_3:38116906-38116925 | None:intergenic | 45.0% | |
| CCTCCTAGAGGAGTAAGTAA+TGG | - | chr4_3:38116903-38116922 | Msa0640210:intron | 45.0% | |
| GTCCCTACTAGATAGTGACA+TGG | - | chr4_3:38117462-38117481 | Msa0640210:intron | 45.0% | |
| !! | TTTGGTAGTGACTCACATGC+CGG | - | chr4_3:38117547-38117566 | Msa0640210:intron | 45.0% |
| CCTGATACTGGATGACTCAA+CGG | + | chr4_3:38117633-38117652 | None:intergenic | 45.0% | |
| CGTTGAGTCATCCAGTATCA+GGG | - | chr4_3:38117631-38117650 | Msa0640210:intron | 45.0% | |
| GTTGAGTCATCCAGTATCAG+GGG | - | chr4_3:38117632-38117651 | Msa0640210:intron | 45.0% | |
| GATTCATGTATTCAGGGAGC+TGG | - | chr4_3:38117745-38117764 | Msa0640210:intron | 45.0% | |
| CCACTTAGTGGGATAAGGTT+TGG | + | chr4_3:38117878-38117897 | None:intergenic | 45.0% | |
| CCAAACCTTATCCCACTAAG+TGG | - | chr4_3:38117875-38117894 | Msa0640210:intron | 45.0% | |
| AAGGAGAGTGGATCAAACGA+AGG | + | chr4_3:38118032-38118051 | None:intergenic | 45.0% | |
| CTCTGTTGTAGTAAGGAGAG+TGG | + | chr4_3:38118044-38118063 | None:intergenic | 45.0% | |
| TTCATCCATTGTCAGGCCAT+TGG | - | chr4_3:38118231-38118250 | Msa0640210:intron | 45.0% | |
| GACCTGAATGGTGATACAAG+TGG | - | chr4_3:38118334-38118353 | Msa0640210:intron | 45.0% | |
| TCCCACTTGTATCACCATTC+AGG | + | chr4_3:38118339-38118358 | None:intergenic | 45.0% | |
| ACAGCCCTTACCTGATAAAC+TGG | - | chr4_3:38118358-38118377 | Msa0640210:intron | 45.0% | |
| GTCAAAAACAGGATGTGGGA+TGG | + | chr4_3:38118631-38118650 | None:intergenic | 45.0% | |
| ! | ATGGCTTGTGGTAGTAGACT+AGG | + | chr4_3:38118747-38118766 | None:intergenic | 45.0% |
| ! | TATTTCGGGTCTGTTTGGTG+TGG | + | chr4_3:38118806-38118825 | None:intergenic | 45.0% |
| ACAGAATGTCGTGAGAGACA+TGG | - | chr4_3:38118876-38118895 | Msa0640210:intron | 45.0% | |
| CTATCTGTCTCACTCAGTCT+AGG | + | chr4_3:38118943-38118962 | None:intergenic | 45.0% | |
| CTTGGACATAGGATATGGGT+CGG | + | chr4_3:38119034-38119053 | None:intergenic | 45.0% | |
| GAGTCTTCTCTTCAGTGCAA+AGG | - | chr4_3:38119157-38119176 | Msa0640210:intron | 45.0% | |
| CGAAGTGAAACCAGACATTG+TGG | - | chr4_3:38119222-38119241 | Msa0640210:CDS | 45.0% | |
| ACCCCAAAACTAGGATAGCA+GGG | + | chr4_3:38119585-38119604 | None:intergenic | 45.0% | |
| GTCATGTGACTGAAAGGTCA+CGG | - | chr4_3:38119778-38119797 | Msa0640210:intron | 45.0% | |
| TCATGTGACTGAAAGGTCAC+GGG | - | chr4_3:38119779-38119798 | Msa0640210:intron | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr4_3:38119812-38119831 | None:intergenic | 45.0% |
| GCTGCGTACAATACACCAAT+TGG | - | chr4_3:38119843-38119862 | Msa0640210:intron | 45.0% | |
| GCGTACAATACACCAATTGG+TGG | - | chr4_3:38119846-38119865 | Msa0640210:intron | 45.0% | |
| AGCTTCTCTTACTAGTGTGC+AGG | - | chr4_3:38120966-38120985 | Msa0640210:intron | 45.0% | |
| TGCCACAAAAGCTTCCCCAT+CGG | - | chr4_3:38115253-38115272 | Msa0640210:three_prime_UTR | 50.0% | |
| CGCCGAGTACTTAGAGTTCA+TGG | - | chr4_3:38115276-38115295 | Msa0640210:three_prime_UTR | 50.0% | |
| GTCCGTGCTTGTGTTCATTC+AGG | + | chr4_3:38115376-38115395 | None:intergenic | 50.0% | |
| ATGAAGCACGGATACGGACA+CGG | + | chr4_3:38115515-38115534 | None:intergenic | 50.0% | |
| GTGTGCACACTCCTCAGATT+AGG | - | chr4_3:38115606-38115625 | Msa0640210:intron | 50.0% | |
| !! | ATGAGAGCAGAGGGTTTTGG+GGG | - | chr4_3:38115996-38116015 | Msa0640210:intron | 50.0% |
| GATCAAAAGTAGGACAGGGC+TGG | + | chr4_3:38116702-38116721 | None:intergenic | 50.0% | |
| TGTGCGGTGAAAGAACAGAG+AGG | - | chr4_3:38117224-38117243 | Msa0640210:intron | 50.0% | |
| !!! | AAGGGGTGCCGTTTTTGTAC+AGG | - | chr4_3:38117270-38117289 | Msa0640210:intron | 50.0% |
| ! | TAGTGACTCACATGCCGGTT+TGG | - | chr4_3:38117552-38117571 | Msa0640210:intron | 50.0% |
| CCTGATTCAACCCACCAAAC+CGG | + | chr4_3:38117569-38117588 | None:intergenic | 50.0% | |
| !! | TTTGGTGGGTTGAATCAGGC+CGG | - | chr4_3:38117570-38117589 | Msa0640210:intron | 50.0% |
| CCGTTGAGTCATCCAGTATC+AGG | - | chr4_3:38117630-38117649 | Msa0640210:intron | 50.0% | |
| TATGTCCAATCCGAGGCATG+AGG | - | chr4_3:38117665-38117684 | Msa0640210:intron | 50.0% | |
| ATGTCCAATCCGAGGCATGA+GGG | - | chr4_3:38117666-38117685 | Msa0640210:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr4_3:38117881-38117900 | Msa0640210:intron | 50.0% | |
| !! | TTAGCTGAGTGGACTGCCAA+TGG | + | chr4_3:38118250-38118269 | None:intergenic | 50.0% |
| ! | TATCTAGGGCGTTAGCTGAG+TGG | + | chr4_3:38118261-38118280 | None:intergenic | 50.0% |
| AACACACACCCCTTACGCAA+AGG | + | chr4_3:38118290-38118309 | None:intergenic | 50.0% | |
| ! | GGTAGTAGACTAGGAGGCAT+TGG | + | chr4_3:38118738-38118757 | None:intergenic | 50.0% |
| GCTTGTGGTAGTAGACTAGG+AGG | + | chr4_3:38118744-38118763 | None:intergenic | 50.0% | |
| CAGTCACGAGAGACAGAGAT+AGG | - | chr4_3:38118843-38118862 | Msa0640210:intron | 50.0% | |
| CGACCCATATCCTATGTCCA+AGG | - | chr4_3:38119032-38119051 | Msa0640210:intron | 50.0% | |
| AACAGAGGGGTTGGGAACTA+GGG | + | chr4_3:38119293-38119312 | None:intergenic | 50.0% | |
| AAACAGAGGGGTTGGGAACT+AGG | + | chr4_3:38119294-38119313 | None:intergenic | 50.0% | |
| ! | TCGCCCTGCTATCCTAGTTT+TGG | - | chr4_3:38119579-38119598 | Msa0640210:intron | 50.0% |
| !! | CGCCCTGCTATCCTAGTTTT+GGG | - | chr4_3:38119580-38119599 | Msa0640210:intron | 50.0% |
| !!! | GCCCTGCTATCCTAGTTTTG+GGG | - | chr4_3:38119581-38119600 | Msa0640210:intron | 50.0% |
| GACCCCAAAACTAGGATAGC+AGG | + | chr4_3:38119586-38119605 | None:intergenic | 50.0% | |
| AGTCTTGGATAGAGGAGCAG+TGG | + | chr4_3:38119608-38119627 | None:intergenic | 50.0% | |
| AGCTAGTTGAGGGGTAACCT+TGG | - | chr4_3:38119736-38119755 | Msa0640210:intron | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | + | chr4_3:38119756-38119775 | None:intergenic | 50.0% | |
| CTTTCGGGAGAAAACGAACG+CGG | - | chr4_3:38121043-38121062 | Msa0640210:intron | 50.0% | |
| !! | TCTAAGTACTCGGCGCCGAT+GGG | + | chr4_3:38115271-38115290 | None:intergenic | 55.0% |
| GCACGGACACTCCTCTGATT+AGG | - | chr4_3:38115388-38115407 | Msa0640210:exon | 55.0% | |
| ACTGGGACACGCCTAATCAG+AGG | + | chr4_3:38115402-38115421 | None:intergenic | 55.0% | |
| TCGGACATGTGTCGGACACT+GGG | + | chr4_3:38115419-38115438 | None:intergenic | 55.0% | |
| ATCGGACATGTGTCGGACAC+TGG | + | chr4_3:38115420-38115439 | None:intergenic | 55.0% | |
| GTCAGTGTCCGTGTCATGTC+CGG | - | chr4_3:38115486-38115505 | Msa0640210:CDS | 55.0% | |
| TATTTGCGAGTCGGAGGGGA+AGG | - | chr4_3:38115920-38115939 | Msa0640210:intron | 55.0% | |
| ATTTGCGAGTCGGAGGGGAA+GGG | - | chr4_3:38115921-38115940 | Msa0640210:intron | 55.0% | |
| CTACAGACGGAGCAACGGAT+TGG | + | chr4_3:38116155-38116174 | None:intergenic | 55.0% | |
| CCAGTCTACAGACGGAGCAA+CGG | + | chr4_3:38116160-38116179 | None:intergenic | 55.0% | |
| !! | TGACTCACATGCCGGTTTGG+TGG | - | chr4_3:38117555-38117574 | Msa0640210:intron | 55.0% |
| !! | GACTCACATGCCGGTTTGGT+GGG | - | chr4_3:38117556-38117575 | Msa0640210:intron | 55.0% |
| !! | CCGGTTTGGTGGGTTGAATC+AGG | - | chr4_3:38117566-38117585 | Msa0640210:intron | 55.0% |
| CGACCCCACTTAGTGGGATA+AGG | + | chr4_3:38117883-38117902 | None:intergenic | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr4_3:38117889-38117908 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr4_3:38117890-38117909 | None:intergenic | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr4_3:38117889-38117908 | Msa0640210:intron | 55.0% | |
| GACTGCCAATGGCCTGACAA+TGG | + | chr4_3:38118239-38118258 | None:intergenic | 55.0% | |
| CAGGATGTGGGATGGCAACA+TGG | + | chr4_3:38118623-38118642 | None:intergenic | 55.0% | |
| CTGGTTTCACTTCGCAGCAG+CGG | + | chr4_3:38119216-38119235 | None:intergenic | 55.0% | |
| AATACAGCGGTGGCTGGCAA+AGG | + | chr4_3:38119260-38119279 | None:intergenic | 55.0% | |
| AGAGCCTTCGAATACAGCGG+TGG | + | chr4_3:38119270-38119289 | None:intergenic | 55.0% | |
| GGGAGAGCCTTCGAATACAG+CGG | + | chr4_3:38119273-38119292 | None:intergenic | 55.0% | |
| GAGCAGTGGACCCCAAAACT+AGG | + | chr4_3:38119594-38119613 | None:intergenic | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr4_3:38119791-38119810 | Msa0640210:intron | 55.0% | |
| CATATGCAGGGTTCGGGAAG+GGG | + | chr4_3:38119874-38119893 | None:intergenic | 55.0% | |
| GCATATGCAGGGTTCGGGAA+GGG | + | chr4_3:38119875-38119894 | None:intergenic | 55.0% | |
| CTTCCCGAACCCTGCATATG+CGG | - | chr4_3:38119874-38119893 | Msa0640210:intron | 55.0% | |
| TTCCCGAACCCTGCATATGC+GGG | - | chr4_3:38119875-38119894 | Msa0640210:intron | 55.0% | |
| CTAGAGCTCCCGCATATGCA+GGG | + | chr4_3:38119886-38119905 | None:intergenic | 55.0% | |
| ACTAGAGCTCCCGCATATGC+AGG | + | chr4_3:38119887-38119906 | None:intergenic | 55.0% | |
| ! | CGCCGATGGGGAAGCTTTTG+TGG | + | chr4_3:38115258-38115277 | None:intergenic | 60.0% |
| !! | CTAAGTACTCGGCGCCGATG+GGG | + | chr4_3:38115270-38115289 | None:intergenic | 60.0% |
| ! | CTCTAAGTACTCGGCGCCGA+TGG | + | chr4_3:38115272-38115291 | None:intergenic | 60.0% |
| CACGGACACCGGACATGACA+CGG | + | chr4_3:38115497-38115516 | None:intergenic | 60.0% | |
| ACGGATACGGACACGGACAC+CGG | + | chr4_3:38115508-38115527 | None:intergenic | 60.0% | |
| CCGTTGCTCCGTCTGTAGAC+TGG | - | chr4_3:38116157-38116176 | Msa0640210:intron | 60.0% | |
| TCCAATCCGAGGCATGAGGG+TGG | - | chr4_3:38117669-38117688 | Msa0640210:intron | 60.0% | |
| ACCACCCTCATGCCTCGGAT+TGG | + | chr4_3:38117673-38117692 | None:intergenic | 60.0% | |
| CACACACCACCCTCATGCCT+CGG | + | chr4_3:38117678-38117697 | None:intergenic | 60.0% | |
| GGGGTTGGGTCCACAATGTC+TGG | + | chr4_3:38119235-38119254 | None:intergenic | 60.0% | |
| CCTTCGAATACAGCGGTGGC+TGG | + | chr4_3:38119266-38119285 | None:intergenic | 60.0% | |
| CCAGCCACCGCTGTATTCGA+AGG | - | chr4_3:38119263-38119282 | Msa0640210:CDS | 60.0% | |
| AGGGGTAACCTTGGCGCAAC+TGG | - | chr4_3:38119745-38119764 | Msa0640210:intron | 60.0% | |
| CGCATATGCAGGGTTCGGGA+AGG | + | chr4_3:38119876-38119895 | None:intergenic | 60.0% | |
| CTCCCGCATATGCAGGGTTC+GGG | + | chr4_3:38119880-38119899 | None:intergenic | 60.0% | |
| GCTCCCGCATATGCAGGGTT+CGG | + | chr4_3:38119881-38119900 | None:intergenic | 60.0% | |
| ! | ATGCGGGAGCTCTAGTGCAC+CGG | - | chr4_3:38119891-38119910 | Msa0640210:intron | 60.0% |
| GGCTGGCAAAGGCAGGGGTT+GGG | + | chr4_3:38119249-38119268 | None:intergenic | 65.0% | |
| TGGCTGGCAAAGGCAGGGGT+TGG | + | chr4_3:38119250-38119269 | None:intergenic | 65.0% | |
| AGCGGTGGCTGGCAAAGGCA+GGG | + | chr4_3:38119255-38119274 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCAAT+TGG | + | chr4_3:38119861-38119880 | None:intergenic | 65.0% | |
| ! | TGCGGGAGCTCTAGTGCACC+GGG | - | chr4_3:38119892-38119911 | Msa0640210:intron | 65.0% |
| TGCGAGTCGGAGGGGAAGGG+AGG | - | chr4_3:38115924-38115943 | Msa0640210:intron | 70.0% | |
| GCGAGTCGGAGGGGAAGGGA+GGG | - | chr4_3:38115925-38115944 | Msa0640210:intron | 70.0% | |
| CGAGTCGGAGGGGAAGGGAG+GGG | - | chr4_3:38115926-38115945 | Msa0640210:intron | 70.0% | |
| TCGGAGGGGAAGGGAGGGGA+GGG | - | chr4_3:38115930-38115949 | Msa0640210:intron | 70.0% | |
| GCGGTGGCTGGCAAAGGCAG+GGG | + | chr4_3:38119254-38119273 | None:intergenic | 70.0% | |
| CAGCGGTGGCTGGCAAAGGC+AGG | + | chr4_3:38119256-38119275 | None:intergenic | 70.0% | |
| GTCGGAGGGGAAGGGAGGGG+AGG | - | chr4_3:38115929-38115948 | Msa0640210:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 38115102 | 38121385 | 38115102 | ID=Msa0640210;Name=Msa0640210 |
| chr4_3 | mRNA | 38115102 | 38121385 | 38115102 | ID=Msa0640210-mRNA-1;Parent=Msa0640210;Name=Msa0640210-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.5|0.66|1|0|0.33|3|297|150 |
| chr4_3 | exon | 38115102 | 38115506 | 38115102 | ID=Msa0640210-mRNA-1:exon:8656;Parent=Msa0640210-mRNA-1 |
| chr4_3 | exon | 38119196 | 38119324 | 38119196 | ID=Msa0640210-mRNA-1:exon:8655;Parent=Msa0640210-mRNA-1 |
| chr4_3 | exon | 38121170 | 38121385 | 38121170 | ID=Msa0640210-mRNA-1:exon:8654;Parent=Msa0640210-mRNA-1 |
| chr4_3 | CDS | 38121170 | 38121385 | 38121170 | ID=Msa0640210-mRNA-1:cds;Parent=Msa0640210-mRNA-1 |
| chr4_3 | CDS | 38119196 | 38119324 | 38119196 | ID=Msa0640210-mRNA-1:cds;Parent=Msa0640210-mRNA-1 |
| chr4_3 | CDS | 38115399 | 38115506 | 38115399 | ID=Msa0640210-mRNA-1:cds;Parent=Msa0640210-mRNA-1 |
| chr4_3 | three_prime_UTR | 38115102 | 38115398 | 38115102 | ID=Msa0640210-mRNA-1:three_prime_utr;Parent=Msa0640210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
