AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0537960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0537960 MtrunA17_Chr4g0000231 91.975 324 24 2 97 419 70 392 0.0 597
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0537960 AT1G78915.1 58.867 406 137 7 22 419 1 384 2.20e-158 452
Msa0537960 AT1G78915.2 56.501 423 137 7 22 419 1 401 2.60e-155 445
Msa0537960 AT1G78915.3 56.103 426 137 7 22 419 1 404 6.98e-155 444

Find 97 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTACAGACATTGACTTTC+AGG 0.158053 4_1:+17059437 Msa0537960:CDS
TGGCCATAGCTTCTACTTAA+TGG 0.208110 4_1:-17063697 None:intergenic
TCTACTTAATGGGGAAATAT+TGG 0.211630 4_1:-17063686 None:intergenic
TAGCTATTCTATATGTAATT+AGG 0.225164 4_1:+17063934 Msa0537960:three_prime_UTR
ACTCAGGTTGAATTACTTCT+AGG 0.252470 4_1:+17062838 Msa0537960:intron
GATGAGGAATTTACTTGAAT+TGG 0.261760 4_1:-17061607 None:intergenic
AACGCCTCAACGCTATTAAA+AGG 0.279505 4_1:+17059460 Msa0537960:CDS
GGTGTAGCTGTTGCAGTCTT+TGG 0.285392 4_1:+17059679 Msa0537960:CDS
GGCCATAGCTTCTACTTAAT+GGG 0.288978 4_1:-17063696 None:intergenic
ACAAACCTCATCTGGCTTCT+TGG 0.302807 4_1:-17061294 None:intergenic
GCAGAAGAGAATAAACAATT+TGG 0.307313 4_1:+17059574 Msa0537960:CDS
ACGAGTGCTTTAGCTTTATC+TGG 0.312842 4_1:-17063524 None:intergenic
ACAGGCTGTTCAATTACTTT+TGG 0.317877 4_1:+17061507 Msa0537960:intron
CGAAAAGCATCAGCATCATT+TGG 0.321295 4_1:-17060790 None:intergenic
CCCAACAGACTCACAGAAAC+TGG 0.323792 4_1:+17061582 Msa0537960:CDS
GATTCAAATTCTCGTGGCTT+CGG 0.341328 4_1:+17059072 Msa0537960:CDS
GAAGGATAAAGCTGCTCTTC+AGG 0.342872 4_1:+17059932 Msa0537960:CDS
CGAGAGCAGTTGGATCTCTT+GGG 0.359823 4_1:-17060271 None:intergenic
TTTATTATTATTCTTCGAAC+CGG 0.373543 4_1:-17059039 None:intergenic
CCAGTTTCTGTGAGTCTGTT+GGG 0.375083 4_1:-17061582 None:intergenic
CTTGGCAGCAAGTAATGAAT+TGG 0.375532 4_1:-17061276 None:intergenic
TTTGCTACCAAGGTTGGAAT+AGG 0.376986 4_1:+17059658 Msa0537960:CDS
TCGAGAGCAGTTGGATCTCT+TGG 0.385657 4_1:-17060272 None:intergenic
AAATATCCACGAAAATCATC+AGG 0.401839 4_1:-17062931 None:intergenic
GACTCTGAAGAAATAGAAAT+AGG 0.409395 4_1:-17059616 None:intergenic
ATATTACGAGACTGGTAGTA+TGG 0.425302 4_1:+17058839 None:intergenic
TATCTTGACATTGATTATGA+TGG 0.426099 4_1:+17063571 Msa0537960:three_prime_UTR
TCCAGTTTCTGTGAGTCTGT+TGG 0.426571 4_1:-17061583 None:intergenic
ACCACAGCACTGTCTTGGTT+GGG 0.439621 4_1:-17059891 None:intergenic
TCAAGATGACAAACCTCATC+TGG 0.444561 4_1:-17061302 None:intergenic
ATCAAATTTGAAGTTCTTCG+TGG 0.449209 4_1:+17061248 Msa0537960:CDS
GAGTCAGACAACAAAACAAT+TGG 0.459047 4_1:+17059634 Msa0537960:CDS
ATACTTACTAGGAGACTGTT+TGG 0.459147 4_1:-17059298 None:intergenic
ATTGGCTTTGCTACCAAGGT+TGG 0.459444 4_1:+17059652 Msa0537960:CDS
GACCACAGCACTGTCTTGGT+TGG 0.464901 4_1:-17059892 None:intergenic
CTGCAACGGTGGTTTGCTCC+CGG 0.472188 4_1:+17059020 Msa0537960:CDS
AATTCTCGTGGCTTCGGAGG+AGG 0.473229 4_1:+17059078 Msa0537960:CDS
TCAGGGAGCTGCAGTAACTT+TGG 0.477449 4_1:+17060361 Msa0537960:intron
TCAAGTAGAGAAGCAGCTCT+TGG 0.479567 4_1:-17060401 None:intergenic
AATCTGGCAGAGTAGGCTTA+AGG 0.480849 4_1:+17060223 Msa0537960:intron
CATTGACCACAGCACTGTCT+TGG 0.489183 4_1:-17059896 None:intergenic
TAGGGAAAGCCTATTCAGAC+TGG 0.489372 4_1:+17062857 Msa0537960:CDS
CTCAGGTTGAATTACTTCTA+GGG 0.491519 4_1:+17062839 Msa0537960:intron
TATGAACTCAAAGATTATGA+AGG 0.497167 4_1:+17060832 Msa0537960:CDS
TCATTGATTCATTCGTGATG+TGG 0.505265 4_1:+17058971 Msa0537960:CDS
ATAGGTGCATCATAGTCAAT+TGG 0.505813 4_1:-17059598 None:intergenic
AACAATTGGCTTTGCTACCA+AGG 0.510682 4_1:+17059648 Msa0537960:CDS
CTACTTACTTCGAGAGCAGT+TGG 0.510701 4_1:-17060281 None:intergenic
TCACGAATGAATCAATGATA+AGG 0.510751 4_1:-17058966 None:intergenic
CTTTCTGTGAATCTGCAGTA+AGG 0.512475 4_1:-17063656 None:intergenic
TCCCCATTAAGTAGAAGCTA+TGG 0.525348 4_1:+17063694 Msa0537960:three_prime_UTR
GACGTGGCCCCAGTCTGAAT+AGG 0.528789 4_1:-17062866 None:intergenic
TGAACTCAGACGCTCACGGC+AGG 0.532174 4_1:-17061530 None:intergenic
GTCAGCACTTGAGCAAAAGA+AGG 0.534318 4_1:+17059552 Msa0537960:CDS
TAAGCTATTATCTTGAATAA+CGG 0.535544 4_1:-17063550 None:intergenic
TGTGAAGTTAAAAGCGGTGC+CGG 0.539704 4_1:-17059408 None:intergenic
ATGTATACCTACCTTCCTGA+TGG 0.543835 4_1:-17059730 None:intergenic
AGCTACACCTATTCCAACCT+TGG 0.544276 4_1:-17059665 None:intergenic
GCAGTAACTTTGGCAGAACT+AGG 0.548651 4_1:+17060371 Msa0537960:CDS
TGCTCGGATTCAAATTCTCG+TGG 0.550601 4_1:+17059066 Msa0537960:CDS
GAATCTGCAGTAAGGAAAAG+AGG 0.553510 4_1:-17063648 None:intergenic
TACGAGACTGGTAGTATGGA+TGG 0.570752 4_1:+17058843 None:intergenic
GAGCTGATCGTAAATAGCTA+TGG 0.571334 4_1:-17062896 None:intergenic
GAGAGCAGTTGGATCTCTTG+GGG 0.577307 4_1:-17060270 None:intergenic
CAGCAAGTAATGAATTGGTA+AGG 0.579172 4_1:-17061271 None:intergenic
TTATTATTATTCTTCGAACC+GGG 0.579174 4_1:-17059038 None:intergenic
TCTACTTGATGATTTGACAA+AGG 0.581273 4_1:+17060415 Msa0537960:CDS
ATGAACTCAAAGATTATGAA+GGG 0.581446 4_1:+17060833 Msa0537960:CDS
AGGTGTCCATATTACGAGAC+TGG 0.582195 4_1:+17058831 None:intergenic
AGGGAAAGCCTATTCAGACT+GGG 0.584128 4_1:+17062858 Msa0537960:CDS
GTTGCAGTTGATGCTTCCGA+TGG 0.585203 4_1:-17059004 None:intergenic
CTTACTAGGAGACTGTTTGG+TGG 0.586512 4_1:-17059295 None:intergenic
TGCATATAAAAGTTCAGCAA+AGG 0.587863 4_1:+17060864 Msa0537960:CDS
GCCATAGCTTCTACTTAATG+GGG 0.589953 4_1:-17063695 None:intergenic
TCACTACTACATTAAACAGA+AGG 0.592643 4_1:+17058932 Msa0537960:CDS
CAATGATAAATTGTCAGAGA+AGG 0.596868 4_1:+17059914 Msa0537960:CDS
TCAAATTCTCGTGGCTTCGG+AGG 0.598502 4_1:+17059075 Msa0537960:CDS
GGAAGCATCAACTGCAACGG+TGG 0.603191 4_1:+17059009 Msa0537960:CDS
GTAGTATGGATGGTATAAGC+GGG 0.605505 4_1:+17058853 Msa0537960:five_prime_UTR
TACTACATTAAACAGAAGGA+AGG 0.616468 4_1:+17058936 Msa0537960:CDS
TGCTGCCAAGAAGCCAGATG+AGG 0.617724 4_1:+17061289 Msa0537960:CDS
ATCGGAAGCATCAACTGCAA+CGG 0.620645 4_1:+17059006 Msa0537960:CDS
ACATTAAACAGAAGGAAGGA+AGG 0.620796 4_1:+17058940 Msa0537960:CDS
AGATAAAGCTAAAGCACTCG+TGG 0.621295 4_1:+17063526 Msa0537960:CDS
TGTATACCTACCTTCCTGAT+GGG 0.622172 4_1:-17059729 None:intergenic
TGTTTAATGTAGTAGTGACA+TGG 0.642191 4_1:-17058927 None:intergenic
GGTAGTATGGATGGTATAAG+CGG 0.644885 4_1:+17058852 Msa0537960:five_prime_UTR
ATGTGGACTGCAATGTCCAT+CGG 0.648596 4_1:+17058988 Msa0537960:CDS
TCAACCTGTGAAGTTAAAAG+CGG 0.653474 4_1:-17059414 None:intergenic
AATATCCACGAAAATCATCA+GGG 0.664165 4_1:-17062930 None:intergenic
GTATGGATGGTATAAGCGGG+AGG 0.674497 4_1:+17058856 Msa0537960:five_prime_UTR
CTTCTGAACTCAGACGCTCA+CGG 0.675199 4_1:-17061534 None:intergenic
GGGAAAGCCTATTCAGACTG+GGG 0.676546 4_1:+17062859 Msa0537960:CDS
TATTCAGACTGGGGCCACGT+CGG 0.685550 4_1:+17062868 Msa0537960:CDS
AAAACATTGGAGATGCTGAG+AGG 0.689706 4_1:+17063325 Msa0537960:CDS
TCCCAACCAAGACAGTGCTG+TGG 0.696430 4_1:+17059890 Msa0537960:CDS
TAGCTATGGCATCACCGACG+TGG 0.718295 4_1:-17062882 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAATAAAAAATTGCT+CGG + chr4_1:17059050-17059069 Msa0537960:CDS 10.0%
!!! TCATTTCTTTTATTTATTTT+TGG + chr4_1:17061851-17061870 Msa0537960:intron 10.0%
!! ATTAATTATTCTTTCTAACT+AGG + chr4_1:17059530-17059549 Msa0537960:intron 15.0%
!!! GATACTTTTCAATAAATAAT+AGG - chr4_1:17060472-17060491 None:intergenic 15.0%
!! TAATGTTATCCATAAATATT+TGG + chr4_1:17061200-17061219 Msa0537960:intron 15.0%
!!! TTTGTGAAAAAAATATTTTC+AGG - chr4_1:17061740-17061759 None:intergenic 15.0%
!!! TTCTTTTATTTATTTTTGGT+TGG + chr4_1:17061855-17061874 Msa0537960:intron 15.0%
!!! TCTTTTATTTATTTTTGGTT+GGG + chr4_1:17061856-17061875 Msa0537960:intron 15.0%
!!! TACATAAACTTAATTTTCTT+AGG + chr4_1:17062735-17062754 Msa0537960:intron 15.0%
!! ATCTCTAAACTAAAAAACTT+TGG - chr4_1:17058894-17058913 None:intergenic 20.0%
!! TTTATTATTATTCTTCGAAC+CGG - chr4_1:17059042-17059061 None:intergenic 20.0%
!! TATTTATTTATTTGTAGAGC+CGG + chr4_1:17059389-17059408 Msa0537960:intron 20.0%
!!! AGTGTAATGCTTAAATTTTA+AGG - chr4_1:17060162-17060181 None:intergenic 20.0%
!! GTAATTTACTGCTAATAATT+TGG + chr4_1:17060526-17060545 Msa0537960:intron 20.0%
!!! TTTTGAAAGAAGATTTTAGT+CGG - chr4_1:17060700-17060719 None:intergenic 20.0%
!! ATATTTCATCTAAATACAGT+GGG + chr4_1:17061438-17061457 Msa0537960:intron 20.0%
!!! AGATATTATTCTCTTTTGTA+AGG + chr4_1:17061646-17061665 Msa0537960:intron 20.0%
!! TACGTTTATTGATAAAATAC+TGG - chr4_1:17061883-17061902 None:intergenic 20.0%
!!! TGAGATTTTACAGAAAAAAT+AGG - chr4_1:17062218-17062237 None:intergenic 20.0%
!!! TTAGAGATATTTTAAAGTGA+TGG - chr4_1:17062263-17062282 None:intergenic 20.0%
!!! GATTTAGTGTGTATTTTATA+AGG - chr4_1:17062287-17062306 None:intergenic 20.0%
!! TTAGTATAAATATGATTGCT+AGG - chr4_1:17062580-17062599 None:intergenic 20.0%
!!! TTATTTTTTGCGATTTTTAC+TGG - chr4_1:17062607-17062626 None:intergenic 20.0%
!! TTCACTAATGTATAAAGATA+AGG - chr4_1:17062639-17062658 None:intergenic 20.0%
!! TTTATATTATTGTGATACTC+AGG + chr4_1:17062822-17062841 Msa0537960:intron 20.0%
!!! GTTGATATTCTAAAACATTA+TGG + chr4_1:17063237-17063256 Msa0537960:intron 20.0%
!!! TATTAATATTTTGCTTTTGC+AGG + chr4_1:17063281-17063300 Msa0537960:intron 20.0%
!!! ATTAATATTTTGCTTTTGCA+GGG + chr4_1:17063282-17063301 Msa0537960:intron 20.0%
!!! CAATGTTTTTGTTTTCTTTT+AGG - chr4_1:17063314-17063333 None:intergenic 20.0%
!! CTAAAAGAAAACAAAAACAT+TGG + chr4_1:17063312-17063331 Msa0537960:CDS 20.0%
!! TAAGCTATTATCTTGAATAA+CGG - chr4_1:17063553-17063572 None:intergenic 20.0%
!! TAGCTATTCTATATGTAATT+AGG + chr4_1:17063934-17063953 Msa0537960:three_prime_UTR 20.0%
! TTATTATTATTCTTCGAACC+GGG - chr4_1:17059041-17059060 None:intergenic 25.0%
! AATTGAATTGCTTCTTTATC+AGG + chr4_1:17059265-17059284 Msa0537960:intron 25.0%
! TAGATAGATAGATACTTACT+AGG - chr4_1:17059312-17059331 None:intergenic 25.0%
!!! TGCTCTTTAATTTTTGTGTA+TGG + chr4_1:17059838-17059857 Msa0537960:intron 25.0%
! AACATTTATTTCACAAGGAA+AGG - chr4_1:17060027-17060046 None:intergenic 25.0%
!! TATCAATGATTCTGTAGTTT+TGG - chr4_1:17060188-17060207 None:intergenic 25.0%
! AGTATATATTTCCTGAAATC+TGG + chr4_1:17060207-17060226 Msa0537960:intron 25.0%
! TGTCTCTAGATATATTTGAA+AGG + chr4_1:17060334-17060353 Msa0537960:intron 25.0%
! GTCTCTAGATATATTTGAAA+GGG + chr4_1:17060335-17060354 Msa0537960:intron 25.0%
!! ATATATTTGAAAGGGTTTTC+AGG + chr4_1:17060343-17060362 Msa0537960:intron 25.0%
!! TATATTTGAAAGGGTTTTCA+GGG + chr4_1:17060344-17060363 Msa0537960:intron 25.0%
! TGACAAAGGTTAGTATTATA+TGG + chr4_1:17060429-17060448 Msa0537960:intron 25.0%
!!! ATTGAAAAGTATCTTCATTC+AGG + chr4_1:17060479-17060498 Msa0537960:intron 25.0%
!!! TTGAAAAGTATCTTCATTCA+GGG + chr4_1:17060480-17060499 Msa0537960:intron 25.0%
! GTTATACATTTAATCTTCTC+AGG + chr4_1:17060658-17060677 Msa0537960:intron 25.0%
! TATGAACTCAAAGATTATGA+AGG + chr4_1:17060832-17060851 Msa0537960:CDS 25.0%
! ATGAACTCAAAGATTATGAA+GGG + chr4_1:17060833-17060852 Msa0537960:CDS 25.0%
! AAACAACTGTCAAAACTAAA+TGG + chr4_1:17060933-17060952 Msa0537960:intron 25.0%
! TTCATTCTGCAATTAAGATT+GGG + chr4_1:17060993-17061012 Msa0537960:intron 25.0%
! TCTTAGTGATTAATTGCTTT+AGG + chr4_1:17061162-17061181 Msa0537960:intron 25.0%
! TAGGATCAACCAAATATTTA+TGG - chr4_1:17061212-17061231 None:intergenic 25.0%
! CATATTTCATCTAAATACAG+TGG + chr4_1:17061437-17061456 Msa0537960:intron 25.0%
! TATTCAATTCTTTCTTCAAC+AGG + chr4_1:17061489-17061508 Msa0537960:intron 25.0%
! TATCAATAAACGTATCAGTT+AGG + chr4_1:17061889-17061908 Msa0537960:intron 25.0%
! AAATTCGATAAAATAACAGC+AGG - chr4_1:17061934-17061953 None:intergenic 25.0%
! GTAAACCTATAAATCTAACA+TGG - chr4_1:17062028-17062047 None:intergenic 25.0%
!!! ACTATCAAGGTTTTAATTTG+CGG + chr4_1:17062059-17062078 Msa0537960:intron 25.0%
!!! TGAATCTTTTGTTTTGCTTT+CGG + chr4_1:17062679-17062698 Msa0537960:intron 25.0%
!! GACAAAATGTTTTCTATGAA+AGG - chr4_1:17062765-17062784 None:intergenic 25.0%
!!! TTAGTGTTATTTACAGTCTA+TGG - chr4_1:17063172-17063191 None:intergenic 25.0%
! ACAGTCATCAATCTAAATTT+AGG - chr4_1:17063429-17063448 None:intergenic 25.0%
!! TAAATTTAGATTGATGACTG+TGG + chr4_1:17063428-17063447 Msa0537960:intron 25.0%
!! TATCTTGACATTGATTATGA+TGG + chr4_1:17063571-17063590 Msa0537960:three_prime_UTR 25.0%
! ATTAGATAGGGAAAATACTT+GGG + chr4_1:17063719-17063738 Msa0537960:intron 25.0%
! TCTTGTAATACTCTATCTAT+CGG - chr4_1:17063907-17063926 None:intergenic 25.0%
!!! TATTTTAATTGGAAGTTCGT+TGG - chr4_1:17063960-17063979 None:intergenic 25.0%
TGTTTAATGTAGTAGTGACA+TGG - chr4_1:17058930-17058949 None:intergenic 30.0%
TCACTACTACATTAAACAGA+AGG + chr4_1:17058932-17058951 Msa0537960:CDS 30.0%
TACTACATTAAACAGAAGGA+AGG + chr4_1:17058936-17058955 Msa0537960:CDS 30.0%
TCACGAATGAATCAATGATA+AGG - chr4_1:17058969-17058988 None:intergenic 30.0%
GCAGAAGAGAATAAACAATT+TGG + chr4_1:17059574-17059593 Msa0537960:CDS 30.0%
! GACTCTGAAGAAATAGAAAT+AGG - chr4_1:17059619-17059638 None:intergenic 30.0%
CATGTAAATGAACATGATGA+GGG - chr4_1:17059820-17059839 None:intergenic 30.0%
! TTTTTGTGTATGGTTGAAAC+TGG + chr4_1:17059848-17059867 Msa0537960:intron 30.0%
CAATGATAAATTGTCAGAGA+AGG + chr4_1:17059914-17059933 Msa0537960:CDS 30.0%
AAAGAAGATTATTGCCAGAA+GGG - chr4_1:17059981-17060000 None:intergenic 30.0%
AAAAGAAGATTATTGCCAGA+AGG - chr4_1:17059982-17060001 None:intergenic 30.0%
ACAAGGAAAGGAAACAAAAT+AGG - chr4_1:17060015-17060034 None:intergenic 30.0%
CAGTGAACATTTATTTCACA+AGG - chr4_1:17060032-17060051 None:intergenic 30.0%
! TCTACTTGATGATTTGACAA+AGG + chr4_1:17060415-17060434 Msa0537960:CDS 30.0%
!! TGAAAAGTATCTTCATTCAG+GGG + chr4_1:17060481-17060500 Msa0537960:intron 30.0%
! AGGGGATTTATTTCTTATGT+AGG + chr4_1:17060499-17060518 Msa0537960:intron 30.0%
CAATCTCTAATTACAATGCA+GGG - chr4_1:17060626-17060645 None:intergenic 30.0%
ACAATCTCTAATTACAATGC+AGG - chr4_1:17060627-17060646 None:intergenic 30.0%
TGCATATAAAAGTTCAGCAA+AGG + chr4_1:17060864-17060883 Msa0537960:CDS 30.0%
!!! ACGACTTCAAACACTTTTTT+TGG + chr4_1:17060899-17060918 Msa0537960:intron 30.0%
!!! CGACTTCAAACACTTTTTTT+GGG + chr4_1:17060900-17060919 Msa0537960:intron 30.0%
GTTCATTCTGCAATTAAGAT+TGG + chr4_1:17060992-17061011 Msa0537960:intron 30.0%
AATATTTGGTTGATCCTAAC+AGG + chr4_1:17061214-17061233 Msa0537960:intron 30.0%
! ATCAAATTTGAAGTTCTTCG+TGG + chr4_1:17061248-17061267 Msa0537960:CDS 30.0%
CTTCATATGAATGTGCTATA+CGG + chr4_1:17061334-17061353 Msa0537960:intron 30.0%
ACTAAGATAAGAAACCAGAA+TGG - chr4_1:17061360-17061379 None:intergenic 30.0%
AATCATCAGATTTCGCTATA+CGG + chr4_1:17061394-17061413 Msa0537960:intron 30.0%
GATGAGGAATTTACTTGAAT+TGG - chr4_1:17061610-17061629 None:intergenic 30.0%
TGTTCACTTTCTAAATGATG+AGG - chr4_1:17061626-17061645 None:intergenic 30.0%
CAGGATACTTTCAATATGTT+GGG + chr4_1:17061812-17061831 Msa0537960:intron 30.0%
CAATAATGAAAACACAAAGG+GGG - chr4_1:17061991-17062010 None:intergenic 30.0%
GCAATAATGAAAACACAAAG+GGG - chr4_1:17061992-17062011 None:intergenic 30.0%
GGCAATAATGAAAACACAAA+GGG - chr4_1:17061993-17062012 None:intergenic 30.0%
! TTTCATTATTGCCGTTTCAT+TGG + chr4_1:17062000-17062019 Msa0537960:intron 30.0%
TGGTACCATGTTAGATTTAT+AGG + chr4_1:17062020-17062039 Msa0537960:intron 30.0%
ATTTATAGGTTTACCGAAGA+AGG + chr4_1:17062034-17062053 Msa0537960:intron 30.0%
ATGGATACTTATTGTTTCCA+GGG - chr4_1:17062512-17062531 None:intergenic 30.0%
TATGGATACTTATTGTTTCC+AGG - chr4_1:17062513-17062532 None:intergenic 30.0%
CATAAAGGAGTAGTAGTTTA+TGG - chr4_1:17062531-17062550 None:intergenic 30.0%
AACTACTACTCCTTTATGAT+CGG + chr4_1:17062533-17062552 Msa0537960:intron 30.0%
!!! GAATCTTTTGTTTTGCTTTC+GGG + chr4_1:17062680-17062699 Msa0537960:intron 30.0%
!!! AATCTTTTGTTTTGCTTTCG+GGG + chr4_1:17062681-17062700 Msa0537960:intron 30.0%
AATATCCACGAAAATCATCA+GGG - chr4_1:17062933-17062952 None:intergenic 30.0%
AAATATCCACGAAAATCATC+AGG - chr4_1:17062934-17062953 None:intergenic 30.0%
ATGAGAGAAAATATAGACCT+TGG - chr4_1:17062959-17062978 None:intergenic 30.0%
TCTCATTTAATCACTAACCA+TGG + chr4_1:17062973-17062992 Msa0537960:intron 30.0%
GAAAAGAAATGATAACTCCA+TGG - chr4_1:17062993-17063012 None:intergenic 30.0%
TGCGAATCAAATTGAAGAAA+AGG + chr4_1:17063015-17063034 Msa0537960:intron 30.0%
ACACTAATTTCACAAAATCG+AGG + chr4_1:17063185-17063204 Msa0537960:intron 30.0%
TCTACTTAATGGGGAAATAT+TGG - chr4_1:17063689-17063708 None:intergenic 30.0%
! CAAGTATTTTCCCTATCTAA+TGG - chr4_1:17063720-17063739 None:intergenic 30.0%
CATTAGATAGGGAAAATACT+TGG + chr4_1:17063718-17063737 Msa0537960:intron 30.0%
CTTGTAATACTCTATCTATC+GGG - chr4_1:17063906-17063925 None:intergenic 30.0%
ACATTAAACAGAAGGAAGGA+AGG + chr4_1:17058940-17058959 Msa0537960:CDS 35.0%
!! TCATTGATTCATTCGTGATG+TGG + chr4_1:17058971-17058990 Msa0537960:CDS 35.0%
ATACTTACTAGGAGACTGTT+TGG - chr4_1:17059301-17059320 None:intergenic 35.0%
TCAACCTGTGAAGTTAAAAG+CGG - chr4_1:17059417-17059436 None:intergenic 35.0%
! CAAACCTTTTAATAGCGTTG+AGG - chr4_1:17059467-17059486 None:intergenic 35.0%
ATAGGTGCATCATAGTCAAT+TGG - chr4_1:17059601-17059620 None:intergenic 35.0%
GAGTCAGACAACAAAACAAT+TGG + chr4_1:17059634-17059653 Msa0537960:CDS 35.0%
GCATGTAAATGAACATGATG+AGG - chr4_1:17059821-17059840 None:intergenic 35.0%
AAGAAGATTATTGCCAGAAG+GGG - chr4_1:17059980-17059999 None:intergenic 35.0%
!! ATTTTAGTCGGAATTGCATG+AGG - chr4_1:17060688-17060707 None:intergenic 35.0%
!!! CTGATTTTTTTCGTGTTCCA+AGG + chr4_1:17060762-17060781 Msa0537960:intron 35.0%
!!! AGCATCATTTGGTTTTTCCT+TGG - chr4_1:17060782-17060801 None:intergenic 35.0%
!!! CTTCAAACACTTTTTTTGGG+TGG + chr4_1:17060903-17060922 Msa0537960:intron 35.0%
ATTCTGCAATTAAGATTGGG+TGG + chr4_1:17060996-17061015 Msa0537960:intron 35.0%
GTACTCATTTACAGAATAGC+TGG - chr4_1:17061084-17061103 None:intergenic 35.0%
! GAACCTGAGTTTAAAACTGT+AGG + chr4_1:17061112-17061131 Msa0537960:intron 35.0%
GATATCTTCAGATACCTGTT+AGG - chr4_1:17061231-17061250 None:intergenic 35.0%
CAGCAAGTAATGAATTGGTA+AGG - chr4_1:17061274-17061293 None:intergenic 35.0%
! ACAGGCTGTTCAATTACTTT+TGG + chr4_1:17061507-17061526 Msa0537960:intron 35.0%
!! CTTTTGTAAGGTCTTGCTAT+AGG + chr4_1:17061658-17061677 Msa0537960:intron 35.0%
CCATGTTAAAGTTATGGTCA+TGG - chr4_1:17061792-17061811 None:intergenic 35.0%
CCATGACCATAACTTTAACA+TGG + chr4_1:17061789-17061808 Msa0537960:intron 35.0%
ATCCTGCCATGTTAAAGTTA+TGG - chr4_1:17061798-17061817 None:intergenic 35.0%
GCAGGATACTTTCAATATGT+TGG + chr4_1:17061811-17061830 Msa0537960:intron 35.0%
CGGCAATAATGAAAACACAA+AGG - chr4_1:17061994-17062013 None:intergenic 35.0%
CTAACATGGTACCAATGAAA+CGG - chr4_1:17062014-17062033 None:intergenic 35.0%
! ACCTTGATAGTTTCCTTCTT+CGG - chr4_1:17062050-17062069 None:intergenic 35.0%
GTTACATCAACCGATCATAA+AGG - chr4_1:17062546-17062565 None:intergenic 35.0%
!! ACTCAGGTTGAATTACTTCT+AGG + chr4_1:17062838-17062857 Msa0537960:intron 35.0%
!! CTCAGGTTGAATTACTTCTA+GGG + chr4_1:17062839-17062858 Msa0537960:intron 35.0%
! TTTTCGTGGATATTTAGCCA+AGG + chr4_1:17062939-17062958 Msa0537960:CDS 35.0%
! TGTCGTTCCTTTTCATTTTG+TGG + chr4_1:17063111-17063130 Msa0537960:intron 35.0%
! GTTCCTTTTCATTTTGTGGT+TGG + chr4_1:17063115-17063134 Msa0537960:intron 35.0%
ACACCAACCACAAAATGAAA+AGG - chr4_1:17063121-17063140 None:intergenic 35.0%
TGTCACAGTGACATTAAATC+TGG + chr4_1:17063750-17063769 Msa0537960:intron 35.0%
ATTAAATCTGGACCACACAA+AGG + chr4_1:17063762-17063781 Msa0537960:intron 35.0%
ACAACACATACAACACATCT+GGG - chr4_1:17063803-17063822 None:intergenic 35.0%
GGTAGTATGGATGGTATAAG+CGG + chr4_1:17058852-17058871 Msa0537960:five_prime_UTR 40.0%
GTAGTATGGATGGTATAAGC+GGG + chr4_1:17058853-17058872 Msa0537960:five_prime_UTR 40.0%
GATTCAAATTCTCGTGGCTT+CGG + chr4_1:17059072-17059091 Msa0537960:CDS 40.0%
!! TGCTACAGACATTGACTTTC+AGG + chr4_1:17059437-17059456 Msa0537960:CDS 40.0%
AACGCCTCAACGCTATTAAA+AGG + chr4_1:17059460-17059479 Msa0537960:CDS 40.0%
!! AACAATTGGCTTTGCTACCA+AGG + chr4_1:17059648-17059667 Msa0537960:CDS 40.0%
TTTGCTACCAAGGTTGGAAT+AGG + chr4_1:17059658-17059677 Msa0537960:CDS 40.0%
!! TTTGGTCTCGTTTTTGCTCT+TGG + chr4_1:17059697-17059716 Msa0537960:CDS 40.0%
TGTATACCTACCTTCCTGAT+GGG - chr4_1:17059732-17059751 None:intergenic 40.0%
ATGTATACCTACCTTCCTGA+TGG - chr4_1:17059733-17059752 None:intergenic 40.0%
TGTCTTGGTTGGGACTAAAA+AGG - chr4_1:17059884-17059903 None:intergenic 40.0%
AGAAGATTATTGCCAGAAGG+GGG - chr4_1:17059979-17059998 None:intergenic 40.0%
ACTAGTGAATCCTGAGTTCA+GGG + chr4_1:17060075-17060094 Msa0537960:intron 40.0%
! AGCACTCGTGCTTTTAATCA+TGG + chr4_1:17060726-17060745 Msa0537960:intron 40.0%
!! CGAAAAGCATCAGCATCATT+TGG - chr4_1:17060793-17060812 None:intergenic 40.0%
TGCAGAATGAACTGAGTTCT+TGG - chr4_1:17060984-17061003 None:intergenic 40.0%
! AGAATAGCTGGTCTAAAAGC+AGG - chr4_1:17061072-17061091 None:intergenic 40.0%
!!! TGGCCTACAGTTTTAAACTC+AGG - chr4_1:17061118-17061137 None:intergenic 40.0%
CTTGGCAGCAAGTAATGAAT+TGG - chr4_1:17061279-17061298 None:intergenic 40.0%
TCAAGATGACAAACCTCATC+TGG - chr4_1:17061305-17061324 None:intergenic 40.0%
TCTAAATACAGTGGGTCTAG+TGG + chr4_1:17061446-17061465 Msa0537960:intron 40.0%
!! TGGTCATGGTGCTGATATAA+AGG - chr4_1:17061778-17061797 None:intergenic 40.0%
GACCATAACTTTAACATGGC+AGG + chr4_1:17061793-17061812 Msa0537960:intron 40.0%
ACCGAAGAAGGAAACTATCA+AGG + chr4_1:17062046-17062065 Msa0537960:intron 40.0%
! ATCTGTTGTGATGCGCATTT+TGG + chr4_1:17062122-17062141 Msa0537960:intron 40.0%
!!! GATGCGCATTTTGGTTATTG+CGG + chr4_1:17062131-17062150 Msa0537960:intron 40.0%
ACCATAATTGCAGCATGATG+CGG + chr4_1:17062422-17062441 Msa0537960:intron 40.0%
TTGTTGCAACCGCAATATTG+TGG + chr4_1:17062454-17062473 Msa0537960:intron 40.0%
GTTTCCAGGGTTTCAAATTG+CGG - chr4_1:17062499-17062518 None:intergenic 40.0%
GAGCTGATCGTAAATAGCTA+TGG - chr4_1:17062899-17062918 None:intergenic 40.0%
! CAGTTGTAACCTTTTTCTGC+AGG + chr4_1:17063487-17063506 Msa0537960:intron 40.0%
!! ACGAGTGCTTTAGCTTTATC+TGG - chr4_1:17063527-17063546 None:intergenic 40.0%
! AGATAAAGCTAAAGCACTCG+TGG + chr4_1:17063526-17063545 Msa0537960:CDS 40.0%
GAATCTGCAGTAAGGAAAAG+AGG - chr4_1:17063651-17063670 None:intergenic 40.0%
CTTTCTGTGAATCTGCAGTA+AGG - chr4_1:17063659-17063678 None:intergenic 40.0%
TCCCCATTAAGTAGAAGCTA+TGG + chr4_1:17063694-17063713 Msa0537960:three_prime_UTR 40.0%
GCCATAGCTTCTACTTAATG+GGG - chr4_1:17063698-17063717 None:intergenic 40.0%
GGCCATAGCTTCTACTTAAT+GGG - chr4_1:17063699-17063718 None:intergenic 40.0%
TGGCCATAGCTTCTACTTAA+TGG - chr4_1:17063700-17063719 None:intergenic 40.0%
AGAAGCTATGGCCATTAGAT+AGG + chr4_1:17063706-17063725 Msa0537960:intron 40.0%
GAAGCTATGGCCATTAGATA+GGG + chr4_1:17063707-17063726 Msa0537960:intron 40.0%
CACAACACATACAACACATC+TGG - chr4_1:17063804-17063823 None:intergenic 40.0%
GTCACCGTGACATTAAATCT+GGG - chr4_1:17063863-17063882 None:intergenic 40.0%
TGTCACCGTGACATTAAATC+TGG - chr4_1:17063864-17063883 None:intergenic 40.0%
! ATGTGGACTGCAATGTCCAT+CGG + chr4_1:17058988-17059007 Msa0537960:CDS 45.0%
!! ATCGGAAGCATCAACTGCAA+CGG + chr4_1:17059006-17059025 Msa0537960:CDS 45.0%
TGCTCGGATTCAAATTCTCG+TGG + chr4_1:17059066-17059085 Msa0537960:CDS 45.0%
CTTACTAGGAGACTGTTTGG+TGG - chr4_1:17059298-17059317 None:intergenic 45.0%
TGTGAAGTTAAAAGCGGTGC+CGG - chr4_1:17059411-17059430 None:intergenic 45.0%
GTCAGCACTTGAGCAAAAGA+AGG + chr4_1:17059552-17059571 Msa0537960:CDS 45.0%
!! ATTGGCTTTGCTACCAAGGT+TGG + chr4_1:17059652-17059671 Msa0537960:CDS 45.0%
AGCTACACCTATTCCAACCT+TGG - chr4_1:17059668-17059687 None:intergenic 45.0%
! CTTGGAGATTTTCTCCCATC+AGG + chr4_1:17059715-17059734 Msa0537960:CDS 45.0%
! GAGATTTTCTCCCATCAGGA+AGG + chr4_1:17059719-17059738 Msa0537960:CDS 45.0%
! TTTTCTCCCATCAGGAAGGT+AGG + chr4_1:17059723-17059742 Msa0537960:intron 45.0%
GAAGGATAAAGCTGCTCTTC+AGG + chr4_1:17059932-17059951 Msa0537960:CDS 45.0%
CAGAAGGGGGAAAAATAAGG+TGG - chr4_1:17059966-17059985 None:intergenic 45.0%
!!! CACCTTATTTTTCCCCCTTC+TGG + chr4_1:17059964-17059983 Msa0537960:intron 45.0%
TGCCAGAAGGGGGAAAAATA+AGG - chr4_1:17059969-17059988 None:intergenic 45.0%
GACTAGTGAATCCTGAGTTC+AGG + chr4_1:17060074-17060093 Msa0537960:intron 45.0%
ATCCTGAGTTCAGGGTTTAC+TGG + chr4_1:17060083-17060102 Msa0537960:intron 45.0%
TTCCTGAAATCTGGCAGAGT+AGG + chr4_1:17060216-17060235 Msa0537960:intron 45.0%
AATCTGGCAGAGTAGGCTTA+AGG + chr4_1:17060223-17060242 Msa0537960:intron 45.0%
CTACTTACTTCGAGAGCAGT+TGG - chr4_1:17060284-17060303 None:intergenic 45.0%
ACTGCTCTCGAAGTAAGTAG+TGG + chr4_1:17060284-17060303 Msa0537960:intron 45.0%
GCAGTAACTTTGGCAGAACT+AGG + chr4_1:17060371-17060390 Msa0537960:CDS 45.0%
TCAAGTAGAGAAGCAGCTCT+TGG - chr4_1:17060404-17060423 None:intergenic 45.0%
! GCTGATGCTTTTCGTTTGCT+TGG + chr4_1:17060799-17060818 Msa0537960:CDS 45.0%
! ACAAACCTCATCTGGCTTCT+TGG - chr4_1:17061297-17061316 None:intergenic 45.0%
AATGTGCTATACGGCCATTC+TGG + chr4_1:17061343-17061362 Msa0537960:intron 45.0%
ATTTCGCTATACGGCCATTC+TGG + chr4_1:17061403-17061422 Msa0537960:intron 45.0%
!! ATGAGCGTTGAGAACCAGAA+TGG - chr4_1:17061420-17061439 None:intergenic 45.0%
CCAGTTTCTGTGAGTCTGTT+GGG - chr4_1:17061585-17061604 None:intergenic 45.0%
TCCAGTTTCTGTGAGTCTGT+TGG - chr4_1:17061586-17061605 None:intergenic 45.0%
CATCACAACAGATGCAATCC+CGG - chr4_1:17062115-17062134 None:intergenic 45.0%
AGTGAAAACCGCAACGTAGT+GGG - chr4_1:17062387-17062406 None:intergenic 45.0%
ACCGCATCATGCTGCAATTA+TGG - chr4_1:17062426-17062445 None:intergenic 45.0%
GTGATGTGGCCACAATATTG+CGG - chr4_1:17062466-17062485 None:intergenic 45.0%
TAGGGAAAGCCTATTCAGAC+TGG + chr4_1:17062857-17062876 Msa0537960:CDS 45.0%
AGGGAAAGCCTATTCAGACT+GGG + chr4_1:17062858-17062877 Msa0537960:CDS 45.0%
! ACTCACCCTGATGATTTTCG+TGG + chr4_1:17062925-17062944 Msa0537960:CDS 45.0%
CAGTCTATGGTCAAAGCGAA+AGG - chr4_1:17063159-17063178 None:intergenic 45.0%
CTTGCGCGACTGAGAATATA+TGG + chr4_1:17063378-17063397 Msa0537960:intron 45.0%
! GTAACCTTTTTCTGCAGGCT+AGG + chr4_1:17063492-17063511 Msa0537960:intron 45.0%
AGAACCTAGCCTGCAGAAAA+AGG - chr4_1:17063499-17063518 None:intergenic 45.0%
CACAACACAACACCTTTGTG+TGG - chr4_1:17063777-17063796 None:intergenic 45.0%
!! CACAAAGGTGTTGTGTTGTG+TGG + chr4_1:17063777-17063796 Msa0537960:intron 45.0%
CACATTGCCACACAACATCT+GGG - chr4_1:17063830-17063849 None:intergenic 45.0%
ACACATTGCCACACAACATC+TGG - chr4_1:17063831-17063850 None:intergenic 45.0%
GTGGCCCAGATTTAATGTCA+CGG + chr4_1:17063856-17063875 Msa0537960:intron 45.0%
!! CTATCTATCGGGAAGCACTT+GGG - chr4_1:17063895-17063914 None:intergenic 45.0%
!! TCTATCTATCGGGAAGCACT+TGG - chr4_1:17063896-17063915 None:intergenic 45.0%
GTATGGATGGTATAAGCGGG+AGG + chr4_1:17058856-17058875 Msa0537960:five_prime_UTR 50.0%
! GTTGCAGTTGATGCTTCCGA+TGG - chr4_1:17059007-17059026 None:intergenic 50.0%
TCAAATTCTCGTGGCTTCGG+AGG + chr4_1:17059075-17059094 Msa0537960:CDS 50.0%
!!! GGCACCGCTTTTAACTTCAC+AGG + chr4_1:17059410-17059429 Msa0537960:CDS 50.0%
GGTGTAGCTGTTGCAGTCTT+TGG + chr4_1:17059679-17059698 Msa0537960:CDS 50.0%
ACCACAGCACTGTCTTGGTT+GGG - chr4_1:17059894-17059913 None:intergenic 50.0%
CATTGACCACAGCACTGTCT+TGG - chr4_1:17059899-17059918 None:intergenic 50.0%
GACCAGTAAACCCTGAACTC+AGG - chr4_1:17060088-17060107 None:intergenic 50.0%
AGCCTACTCTGCCAGATTTC+AGG - chr4_1:17060221-17060240 None:intergenic 50.0%
GAGAGCAGTTGGATCTCTTG+GGG - chr4_1:17060273-17060292 None:intergenic 50.0%
CGAGAGCAGTTGGATCTCTT+GGG - chr4_1:17060274-17060293 None:intergenic 50.0%
TCGAGAGCAGTTGGATCTCT+TGG - chr4_1:17060275-17060294 None:intergenic 50.0%
TCAGGGAGCTGCAGTAACTT+TGG + chr4_1:17060361-17060380 Msa0537960:intron 50.0%
AAACTGTAGGCCACAGCAAG+AGG + chr4_1:17061125-17061144 Msa0537960:intron 50.0%
GTAACCATAGCCTCTTGCTG+TGG - chr4_1:17061138-17061157 None:intergenic 50.0%
CTTCTGAACTCAGACGCTCA+CGG - chr4_1:17061537-17061556 None:intergenic 50.0%
CCCAACAGACTCACAGAAAC+TGG + chr4_1:17061582-17061601 Msa0537960:CDS 50.0%
!! TTAATTTGCGGTCGCCGATG+CGG + chr4_1:17062071-17062090 Msa0537960:intron 50.0%
GTTGTGACCACTACGATTGC+CGG + chr4_1:17062093-17062112 Msa0537960:intron 50.0%
TTGTGACCACTACGATTGCC+GGG + chr4_1:17062094-17062113 Msa0537960:intron 50.0%
CAGTGAAAACCGCAACGTAG+TGG - chr4_1:17062388-17062407 None:intergenic 50.0%
ATTGCAGCATGATGCGGTTG+TGG + chr4_1:17062428-17062447 Msa0537960:intron 50.0%
! TGGTCCGCAATTTGAAACCC+TGG + chr4_1:17062492-17062511 Msa0537960:intron 50.0%
GGGAAAGCCTATTCAGACTG+GGG + chr4_1:17062859-17062878 Msa0537960:CDS 50.0%
TGTGTGACCCAGATGTTGTG+TGG + chr4_1:17063820-17063839 Msa0537960:intron 50.0%
GTGTGGCAATGTGTGTTGTG+TGG + chr4_1:17063837-17063856 Msa0537960:intron 50.0%
!! GGAAGCATCAACTGCAACGG+TGG + chr4_1:17059009-17059028 Msa0537960:CDS 55.0%
AATTCTCGTGGCTTCGGAGG+AGG + chr4_1:17059078-17059097 Msa0537960:CDS 55.0%
TCCCAACCAAGACAGTGCTG+TGG + chr4_1:17059890-17059909 Msa0537960:CDS 55.0%
GACCACAGCACTGTCTTGGT+TGG - chr4_1:17059895-17059914 None:intergenic 55.0%
TAGGCCACAGCAAGAGGCTA+TGG + chr4_1:17061131-17061150 Msa0537960:intron 55.0%
TGCTGCCAAGAAGCCAGATG+AGG + chr4_1:17061289-17061308 Msa0537960:CDS 55.0%
CGTAGTGGTCACAACCGCAT+CGG - chr4_1:17062088-17062107 None:intergenic 55.0%
TGCAATCCCGGCAATCGTAG+TGG - chr4_1:17062103-17062122 None:intergenic 55.0%
!! AACGTAGTGGGTGTAACGGC+TGG - chr4_1:17062375-17062394 None:intergenic 55.0%
!! CCGCAACGTAGTGGGTGTAA+CGG - chr4_1:17062379-17062398 None:intergenic 55.0%
CCGTTACACCCACTACGTTG+CGG + chr4_1:17062376-17062395 Msa0537960:intron 55.0%
TGTGGCCACATCACGTGATG+TGG + chr4_1:17062472-17062491 Msa0537960:intron 55.0%
TATTCAGACTGGGGCCACGT+CGG + chr4_1:17062868-17062887 Msa0537960:CDS 55.0%
TAGCTATGGCATCACCGACG+TGG - chr4_1:17062885-17062904 None:intergenic 55.0%
!! CTGCAACGGTGGTTTGCTCC+CGG + chr4_1:17059020-17059039 Msa0537960:CDS 60.0%
AAGCAGCAGCAGCAGCAGCA+AGG + chr4_1:17059156-17059175 Msa0537960:CDS 60.0%
AGCAGCAGCAGCAGCAGCAA+GGG + chr4_1:17059157-17059176 Msa0537960:CDS 60.0%
TGAACTCAGACGCTCACGGC+AGG - chr4_1:17061533-17061552 None:intergenic 60.0%
GCGGACCACATCACGTGATG+TGG - chr4_1:17062480-17062499 None:intergenic 60.0%
GACGTGGCCCCAGTCTGAAT+AGG - chr4_1:17062869-17062888 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 17058845 17063983 17058845 ID=Msa0537960;Name=Msa0537960
chr4_1 mRNA 17058845 17063983 17058845 ID=Msa0537960-mRNA-1;Parent=Msa0537960;Name=Msa0537960-mRNA-1;_AED=0.11;_eAED=0.11;_QI=77|1|1|1|0.92|0.85|14|231|419
chr4_1 exon 17058845 17059178 17058845 ID=Msa0537960-mRNA-1:exon:5006;Parent=Msa0537960-mRNA-1
chr4_1 exon 17059287 17059312 17059287 ID=Msa0537960-mRNA-1:exon:5007;Parent=Msa0537960-mRNA-1
chr4_1 exon 17059406 17059481 17059406 ID=Msa0537960-mRNA-1:exon:5008;Parent=Msa0537960-mRNA-1
chr4_1 exon 17059552 17059740 17059552 ID=Msa0537960-mRNA-1:exon:5009;Parent=Msa0537960-mRNA-1
chr4_1 exon 17059890 17059953 17059890 ID=Msa0537960-mRNA-1:exon:5010;Parent=Msa0537960-mRNA-1
chr4_1 exon 17060233 17060295 17060233 ID=Msa0537960-mRNA-1:exon:5011;Parent=Msa0537960-mRNA-1
chr4_1 exon 17060365 17060436 17060365 ID=Msa0537960-mRNA-1:exon:5012;Parent=Msa0537960-mRNA-1
chr4_1 exon 17060784 17060885 17060784 ID=Msa0537960-mRNA-1:exon:5013;Parent=Msa0537960-mRNA-1
chr4_1 exon 17061236 17061310 17061236 ID=Msa0537960-mRNA-1:exon:5014;Parent=Msa0537960-mRNA-1
chr4_1 exon 17061511 17061615 17061511 ID=Msa0537960-mRNA-1:exon:5015;Parent=Msa0537960-mRNA-1
chr4_1 exon 17062844 17062960 17062844 ID=Msa0537960-mRNA-1:exon:5016;Parent=Msa0537960-mRNA-1
chr4_1 exon 17063303 17063359 17063303 ID=Msa0537960-mRNA-1:exon:5017;Parent=Msa0537960-mRNA-1
chr4_1 exon 17063509 17063723 17063509 ID=Msa0537960-mRNA-1:exon:5018;Parent=Msa0537960-mRNA-1
chr4_1 exon 17063911 17063983 17063911 ID=Msa0537960-mRNA-1:exon:5019;Parent=Msa0537960-mRNA-1
chr4_1 five_prime_UTR 17058845 17058921 17058845 ID=Msa0537960-mRNA-1:five_prime_utr;Parent=Msa0537960-mRNA-1
chr4_1 CDS 17058922 17059178 17058922 ID=Msa0537960-mRNA-1:cds;Parent=Msa0537960-mRNA-1
chr4_1 CDS 17059287 17059312 17059287 ID=Msa0537960-mRNA-1:cds;Parent=Msa0537960-mRNA-1
chr4_1 CDS 17059406 17059481 17059406 ID=Msa0537960-mRNA-1:cds;Parent=Msa0537960-mRNA-1
chr4_1 CDS 17059552 17059740 17059552 ID=Msa0537960-mRNA-1:cds;Parent=Msa0537960-mRNA-1
chr4_1 CDS 17059890 17059953 17059890 ID=Msa0537960-mRNA-1:cds;Parent=Msa0537960-mRNA-1
chr4_1 CDS 17060233 17060295 17060233 ID=Msa0537960-mRNA-1:cds;Parent=Msa0537960-mRNA-1
chr4_1 CDS 17060365 17060436 17060365 ID=Msa0537960-mRNA-1:cds;Parent=Msa0537960-mRNA-1
chr4_1 CDS 17060784 17060885 17060784 ID=Msa0537960-mRNA-1:cds;Parent=Msa0537960-mRNA-1
chr4_1 CDS 17061236 17061310 17061236 ID=Msa0537960-mRNA-1:cds;Parent=Msa0537960-mRNA-1
chr4_1 CDS 17061511 17061615 17061511 ID=Msa0537960-mRNA-1:cds;Parent=Msa0537960-mRNA-1
chr4_1 CDS 17062844 17062960 17062844 ID=Msa0537960-mRNA-1:cds;Parent=Msa0537960-mRNA-1
chr4_1 CDS 17063303 17063359 17063303 ID=Msa0537960-mRNA-1:cds;Parent=Msa0537960-mRNA-1
chr4_1 CDS 17063509 17063565 17063509 ID=Msa0537960-mRNA-1:cds;Parent=Msa0537960-mRNA-1
chr4_1 three_prime_UTR 17063566 17063723 17063566 ID=Msa0537960-mRNA-1:three_prime_utr;Parent=Msa0537960-mRNA-1
chr4_1 three_prime_UTR 17063911 17063983 17063911 ID=Msa0537960-mRNA-1:three_prime_utr;Parent=Msa0537960-mRNA-1
Gene Sequence

>Msa0537960

ATGTGCCATGTCACTACTACATTAAACAGAAGGAAGGAAGGAAACCTTATCATTGATTCATTCGTGATGTGGACTGCAATGTCCATCGGAAGCATCAACTGCAACGGTGGTTTGCTCCCGGTTCGAAGAATAATAATAAAAAATTGCTCGGATTCAAATTCTCGTGGCTTCGGAGGAGGTGCAGATAACAATAACAATAAAGTTGCTGCTGCTGCTGATAAGAAGAAGAAGAAGAAGCAGCAGCAGCAGCAGCAAGGGAAATCATCCACCAAACAGTCTCCTAAGCCGGCACCGCTTTTAACTTCACAGGTTGATGCTACAGACATTGACTTTCAGGAACGCCTCAACGCTATTAAAAGGTCAGCACTTGAGCAAAAGAAGGCAGAAGAGAATAAACAATTTGGACCAATTGACTATGATGCACCTATTTCTATTTCTTCAGAGTCAGACAACAAAACAATTGGCTTTGCTACCAAGGTTGGAATAGGTGTAGCTGTTGCAGTCTTTGGTCTCGTTTTTGCTCTTGGAGATTTTCTCCCATCAGGAAGTCCCAACCAAGACAGTGCTGTGGTCAATGATAAATTGTCAGAGAAGGATAAAGCTGCTCTTCAGAGTAGGCTTAAGGAATTTGAAGCAACATTAAGTAACTCCCCAAGAGATCCAACTGCTCTCGAAGGAGCTGCAGTAACTTTGGCAGAACTAGGAGAGTATCCAAGAGCTGCTTCTCTACTTGATGATTTGACAAAGGAAAAACCAAATGATGCTGATGCTTTTCGTTTGCTTGGAGAAGTAAAATATGAACTCAAAGATTATGAAGGGAGTGTTGCTGCATATAAAAGTTCAGCAAAGGTATCTGAAGATATCAAATTTGAAGTTCTTCGTGGCCTTACCAATTCATTACTTGCTGCCAAGAAGCCAGATGAGGCTGTTCAATTACTTTTGGCCTGCCGTGAGCGTCTGAGTTCAGAAGACTTCAGCAGAAAATCTGATAGCAGCCCAACAGACTCACAGAAACTGGATCCAATTCAAGTTGAATTACTTCTAGGGAAAGCCTATTCAGACTGGGGCCACGTCGGTGATGCCATAGCTATTTACGATCAGCTCATATCAACTCACCCTGATGATTTTCGTGGATATTTAGCCAAGGGAATTATCCTAAAAGAAAACAAAAACATTGGAGATGCTGAGAGGATGTTCATTCAAGCTAGGTTCTTTGCACCAGATAAAGCTAAAGCACTCGTGGACCGTTATTCAAGATAA

Protein sequence

>Msa0537960

MCHVTTTLNRRKEGNLIIDSFVMWTAMSIGSINCNGGLLPVRRIIIKNCSDSNSRGFGGGADNNNNKVAAAADKKKKKKQQQQQQGKSSTKQSPKPAPLLTSQVDATDIDFQERLNAIKRSALEQKKAEENKQFGPIDYDAPISISSESDNKTIGFATKVGIGVAVAVFGLVFALGDFLPSGSPNQDSAVVNDKLSEKDKAALQSRLKEFEATLSNSPRDPTALEGAAVTLAELGEYPRAASLLDDLTKEKPNDADAFRLLGEVKYELKDYEGSVAAYKSSAKVSEDIKFEVLRGLTNSLLAAKKPDEAVQLLLACRERLSSEDFSRKSDSSPTDSQKLDPIQVELLLGKAYSDWGHVGDAIAIYDQLISTHPDDFRGYLAKGIILKENKNIGDAERMFIQARFFAPDKAKALVDRYSR*