AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0565430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0565430 MtrunA17_Chr8g0380251 98.947 95 1 0 3 97 371 465 8.93e-63 197
Msa0565430 MtrunA17_Chr1g0186021 62.162 74 28 0 1 74 395 468 2.05e-25 98.2
Msa0565430 MtrunA17_Chr1g0173891 60.811 74 29 0 3 76 253 326 5.82e-24 93.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0565430 AT5G46390.2 78.723 94 20 0 3 96 395 488 3.48e-50 165
Msa0565430 AT4G17740.2 62.162 74 28 0 1 74 397 470 1.62e-24 95.9
Msa0565430 AT4G17740.1 62.162 74 28 0 1 74 407 480 1.92e-24 95.9
Msa0565430 AT3G57680.1 60.811 74 29 0 3 76 399 472 8.74e-24 94.0
Msa0565430 AT3G57680.3 60.811 74 29 0 3 76 250 323 1.04e-23 92.8
Msa0565430 AT3G57680.2 60.811 74 29 0 3 76 250 323 1.04e-23 92.8

Find 155 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATGACACTGTCACTTTAT+TGG 0.138263 4_1:+66298406 Msa0565430:three_prime_UTR
CAATTATACCTGGAAGTTTC+TGG 0.170732 4_1:-66297649 None:intergenic
CATACAGGAGTTCGTATTTA+AGG 0.188220 4_1:+66298221 Msa0565430:three_prime_UTR
CAAGCGGATGCTGGCCAGTT+TGG 0.236470 4_1:+66294394 Msa0565430:five_prime_UTR
TGGAACATCTGTGACTATTC+AGG 0.258305 4_1:+66295425 Msa0565430:five_prime_UTR
GAAAGCTTAGTGGGAATAAT+TGG 0.279646 4_1:-66293605 None:intergenic
GAAGGTATTGGGATTAATAT+TGG 0.289827 4_1:+66295042 Msa0565430:five_prime_UTR
TTCCATTAGGGCCTTGCAAC+AGG 0.291802 4_1:-66295407 None:intergenic
AAACAACAGCTTGCTGGAAC+TGG 0.294485 4_1:-66296984 None:intergenic
AAGAGAGGAGATTAGGAAAT+CGG 0.296703 4_1:-66297109 None:intergenic
GTTAATAACACAGAGGTAAA+TGG 0.308388 4_1:+66295360 Msa0565430:five_prime_UTR
AATGATGACTTTCTTGATAC+TGG 0.317286 4_1:+66293845 Msa0565430:five_prime_UTR
CCAAAGCACAAGGACATAAA+TGG 0.324637 4_1:+66297605 Msa0565430:CDS
AAGCTTTGCAATTTCAATTC+CGG 0.328383 4_1:-66296343 None:intergenic
CCCGACTTCCAGAAACTTCC+AGG 0.339545 4_1:+66297641 Msa0565430:CDS
TTACCGTGTCTCCTTCGTTT+AGG 0.341822 4_1:-66296368 None:intergenic
GAAAGTGGTGCTGCTCATAT+TGG 0.341972 4_1:+66295643 Msa0565430:five_prime_UTR
GGTGAAAGAAAACGTGTATA+AGG 0.347877 4_1:-66294422 None:intergenic
TGGTAGGAAGAAGTGATCTA+AGG 0.357565 4_1:+66298195 Msa0565430:three_prime_UTR
AAGCGGATGCTGGCCAGTTT+GGG 0.360662 4_1:+66294395 Msa0565430:five_prime_UTR
TCCCTGTTGCAAGGCCCTAA+TGG 0.360801 4_1:+66295405 Msa0565430:five_prime_UTR
AGGGAAGTTACGGATGAAAA+TGG 0.361071 4_1:+66295007 Msa0565430:five_prime_UTR
CTCAACATCACGGCATGTTT+CGG 0.365265 4_1:-66293744 None:intergenic
CCATTTATGTCCTTGTGCTT+TGG 0.367073 4_1:-66297605 None:intergenic
TTTGAATGCACCGTAGAAAC+TGG 0.379966 4_1:-66298053 None:intergenic
CTGGTATTGGAATAAACCTT+AGG 0.384790 4_1:+66294987 Msa0565430:five_prime_UTR
CTTGCAACTACACTCTCCTT+TGG 0.384978 4_1:+66293644 Msa0565430:five_prime_UTR
AGAGAGGAGATTAGGAAATC+GGG 0.386696 4_1:-66297108 None:intergenic
ATAGTCACAGATGTTCCATT+AGG 0.391197 4_1:-66295420 None:intergenic
GACCATGGGCTGAAGGTATT+GGG 0.393402 4_1:+66295031 Msa0565430:five_prime_UTR
TGAACTTCAATTGATTCAAC+AGG 0.393542 4_1:-66295571 None:intergenic
AGACCATGGGCTGAAGGTAT+TGG 0.393937 4_1:+66295030 Msa0565430:five_prime_UTR
TGCCTTTGACCTTGTCTGAA+TGG 0.396329 4_1:-66294360 None:intergenic
TACCAATGAAGGACTTGTTC+AGG 0.398498 4_1:+66293805 Msa0565430:five_prime_UTR
GAGGAAGTAGAGAGAGGGAT+TGG 0.399045 4_1:-66293722 None:intergenic
TATCCGAAACAACAGCTTGC+TGG 0.404299 4_1:-66296990 None:intergenic
TACAGTATGTCGTTGTTTAG+TGG 0.410190 4_1:+66297185 Msa0565430:five_prime_UTR
TTCCTGAACAAGTCCTTCAT+TGG 0.422208 4_1:-66293807 None:intergenic
TAGTAATACTTAACTAATAT+AGG 0.422634 4_1:+66298275 Msa0565430:three_prime_UTR
CTTGAAGCTCAAATACAGAT+TGG 0.425182 4_1:-66297541 None:intergenic
TCATGTATTCATATATCAAT+AGG 0.436212 4_1:-66298389 None:intergenic
GTTCCAGCAAGCTGTTGTTT+CGG 0.436242 4_1:+66296987 Msa0565430:five_prime_UTR
CTGGTGTGGTTATAACTGTT+GGG 0.440327 4_1:+66297570 Msa0565430:CDS
TAGTCACAGATGTTCCATTA+GGG 0.443517 4_1:-66295419 None:intergenic
GACGGTCCTGCTCATTCTGC+TGG 0.446334 4_1:+66295064 Msa0565430:five_prime_UTR
TGGTCGCAACCGTTGGTCTC+AGG 0.446965 4_1:+66293865 Msa0565430:five_prime_UTR
CCAATGCATTGAACTCTTTG+AGG 0.452389 4_1:-66295675 None:intergenic
TCTGGTGTGGTTATAACTGT+TGG 0.453331 4_1:+66297569 Msa0565430:CDS
CATGTCATACCTCGCCATCT+TGG 0.454892 4_1:-66294963 None:intergenic
TGTATAAGGATCGCCCAAAC+TGG 0.456151 4_1:-66294408 None:intergenic
GTAGAGAGAGGGATTGGAAG+AGG 0.456800 4_1:-66293716 None:intergenic
CCTTCATTGGTAACAACCTC+AGG 0.460247 4_1:-66293794 None:intergenic
TGAAGTTCAGCGGCAATTTG+TGG 0.460683 4_1:+66295585 Msa0565430:five_prime_UTR
TGAAGAGCAGATGCAGAAGA+AGG 0.463218 4_1:-66293686 None:intergenic
AACAACAGCTTGCTGGAACT+GGG 0.463806 4_1:-66296983 None:intergenic
AAAGTGGTGCTGCTCATATT+GGG 0.464184 4_1:+66295644 Msa0565430:five_prime_UTR
CACTTTCAGTTTGTTCCATA+CGG 0.469501 4_1:-66295627 None:intergenic
AGGTATGACATGACTGGTAT+TGG 0.470655 4_1:+66294974 Msa0565430:five_prime_UTR
CTCGTTGGAAAACGCACATA+TGG 0.472815 4_1:+66297422 Msa0565430:CDS
ACCTGGAAGTTTCTGGAAGT+CGG 0.473085 4_1:-66297642 None:intergenic
TTGGATCTTAGAGATAATCT+TGG 0.473432 4_1:+66295833 Msa0565430:five_prime_UTR
CCTGGAAGTTTCTGGAAGTC+GGG 0.481707 4_1:-66297641 None:intergenic
ACAACAGCTTGCTGGAACTG+GGG 0.481816 4_1:-66296982 None:intergenic
AATAAACCTTAGGGAAGTTA+CGG 0.481828 4_1:+66294997 Msa0565430:five_prime_UTR
TGGGGTGTTGAAAGTATTGT+TGG 0.482845 4_1:-66293554 None:intergenic
AGCAGATGCAGAAGAAGGGA+AGG 0.488126 4_1:-66293681 None:intergenic
AAGGACTTGTTCAGGAAGCT+TGG 0.491839 4_1:+66293813 Msa0565430:five_prime_UTR
CCTGAGGTTGTTACCAATGA+AGG 0.492506 4_1:+66293794 Msa0565430:five_prime_UTR
TTGATACTGGTCGCAACCGT+TGG 0.494736 4_1:+66293858 Msa0565430:five_prime_UTR
AAGATCCAATACAAAATATG+AGG 0.497184 4_1:-66295819 None:intergenic
TCTGTATTTGAGCTTCAAGA+TGG 0.497337 4_1:+66297545 Msa0565430:CDS
AAGTTGCTTCAGTTATGCTC+AGG 0.498921 4_1:-66298246 None:intergenic
TTGCAAGGAGGGTGTTGTGA+AGG 0.501563 4_1:-66293628 None:intergenic
TCATTCTGCTGGTGTCAGAC+AGG 0.502702 4_1:+66295075 Msa0565430:five_prime_UTR
TGATAGGTCATCTACACTGC+TGG 0.503687 4_1:+66296952 Msa0565430:intron
CTTCTAAAGAATCCGCATGC+TGG 0.503700 4_1:+66298113 Msa0565430:three_prime_UTR
ATGAGATGAATGAGAGGCTA+TGG 0.504700 4_1:+66293316 Msa0565430:five_prime_UTR
TTTGAGCTTCAAGATGGGTC+TGG 0.505669 4_1:+66297551 Msa0565430:CDS
TAATCTTGGTGGGCTAGTGC+AGG 0.505943 4_1:+66295847 Msa0565430:five_prime_UTR
TGCAAGGAGGGTGTTGTGAA+GGG 0.514883 4_1:-66293627 None:intergenic
ATAGACACATAACACAAGAT+TGG 0.515667 4_1:+66298175 Msa0565430:three_prime_UTR
GAGAGAGGGATTGGAAGAGG+AGG 0.520963 4_1:-66293713 None:intergenic
TGGTATTGGAATAAACCTTA+GGG 0.523685 4_1:+66294988 Msa0565430:five_prime_UTR
TGTTGAAAGTATTGTTGGAG+TGG 0.527937 4_1:-66293549 None:intergenic
GAAGAATGGATTACCTCCTC+AGG 0.528232 4_1:-66294443 None:intergenic
TTGTGAAGGGAAAGCTTAGT+GGG 0.528461 4_1:-66293614 None:intergenic
AGTGATCTAAGGAAGCATAC+AGG 0.529961 4_1:+66298206 Msa0565430:three_prime_UTR
GTTGTGAAGGGAAAGCTTAG+TGG 0.530687 4_1:-66293615 None:intergenic
TGTTCCATACGGTAAGAGAC+TGG 0.531186 4_1:-66295616 None:intergenic
GCTCGAAAAGATTTAGTCAT+CGG 0.531541 4_1:+66295697 Msa0565430:five_prime_UTR
ACCGTTGGTCTCAGGATACC+TGG 0.531650 4_1:+66293873 Msa0565430:five_prime_UTR
GGAGAGTGTAGTTGCAAGGA+GGG 0.531892 4_1:-66293639 None:intergenic
ACAAGAGGAGCACGGATCAA+TGG 0.532220 4_1:-66297018 None:intergenic
CGCAGTTCCAACTGCTCCTG+AGG 0.533079 4_1:+66293778 Msa0565430:five_prime_UTR
TGAGCATAACTGAAGCAACT+TGG 0.537032 4_1:+66298248 Msa0565430:three_prime_UTR
GATCTTAGAGATAATCTTGG+TGG 0.537887 4_1:+66295836 Msa0565430:five_prime_UTR
TTTCATCCGTAACTTCCCTA+AGG 0.542168 4_1:-66295003 None:intergenic
CAGATGCAGAAGAAGGGAAG+GGG 0.543799 4_1:-66293679 None:intergenic
CCTCAAAGAGTTCAATGCAT+TGG 0.545821 4_1:+66295675 Msa0565430:five_prime_UTR
GGAGTGGTGGAGAGTGATGA+AGG 0.547929 4_1:-66293533 None:intergenic
ATCTTAGAGATAATCTTGGT+GGG 0.549550 4_1:+66295837 Msa0565430:five_prime_UTR
AATTGTCGAGCTGTTCTCGT+TGG 0.550446 4_1:+66297407 Msa0565430:CDS
CGTATGGAACAAACTGAAAG+TGG 0.551046 4_1:+66295628 Msa0565430:five_prime_UTR
AGATGCAGAAGAAGGGAAGG+GGG 0.555276 4_1:-66293678 None:intergenic
CACACCAGTCTCTTACCGTA+TGG 0.556124 4_1:+66295612 Msa0565430:five_prime_UTR
CAAGGATAAACCAGTTTCTA+CGG 0.556253 4_1:+66298043 Msa0565430:exon
AGCTCAAGCATGGAAACTGT+GGG 0.565529 4_1:+66295548 Msa0565430:intron
CGTTGTTGTCAGCTCAAGCA+TGG 0.565807 4_1:+66295538 Msa0565430:intron
ATCCCAATACCTTCAGCCCA+TGG 0.569254 4_1:-66295033 None:intergenic
CAACATCATCAAGCGGATGC+TGG 0.572477 4_1:+66294385 Msa0565430:five_prime_UTR
CTGTATTTGAGCTTCAAGAT+GGG 0.577139 4_1:+66297546 Msa0565430:CDS
GCAGATGCAGAAGAAGGGAA+GGG 0.577572 4_1:-66293680 None:intergenic
GTAACAACCTCAGGAGCAGT+TGG 0.578338 4_1:-66293785 None:intergenic
CAGCTCAAGCATGGAAACTG+TGG 0.578820 4_1:+66295547 Msa0565430:intron
ACACATAACACAAGATTGGT+AGG 0.581055 4_1:+66298179 Msa0565430:three_prime_UTR
GAACATTGATGATACCTGCC+AGG 0.586445 4_1:-66293891 None:intergenic
GAAGTATCATCCCTGTTGCA+AGG 0.589347 4_1:+66295396 Msa0565430:five_prime_UTR
ATACTTAACTAATATAGGAA+AGG 0.590073 4_1:+66298280 Msa0565430:three_prime_UTR
TGAAAGTATTGTTGGAGTGG+TGG 0.590643 4_1:-66293546 None:intergenic
TTCCATTCAGACAAGGTCAA+AGG 0.593150 4_1:+66294358 Msa0565430:five_prime_UTR
ACGGATGAAAATGGAGACCA+TGG 0.594796 4_1:+66295016 Msa0565430:five_prime_UTR
GAAGAGCAGATGCAGAAGAA+GGG 0.595058 4_1:-66293685 None:intergenic
TTGGTCTCAGGATACCTGGC+AGG 0.596168 4_1:+66293877 Msa0565430:five_prime_UTR
CAAAGGAGAGTGTAGTTGCA+AGG 0.596188 4_1:-66293643 None:intergenic
CAACAGCTTGCTGGAACTGG+GGG 0.597395 4_1:-66296981 None:intergenic
CTGACACCAGCAGAATGAGC+AGG 0.598327 4_1:-66295070 None:intergenic
AAATGGAGACCATGGGCTGA+AGG 0.601753 4_1:+66295024 Msa0565430:five_prime_UTR
GTATTGGGATTAATATTGGA+CGG 0.602411 4_1:+66295046 Msa0565430:five_prime_UTR
ATGGCGAGGTATGACATGAC+TGG 0.602836 4_1:+66294968 Msa0565430:five_prime_UTR
TAACTAGATTAAATTAAACT+CGG 0.604609 4_1:+66293390 Msa0565430:five_prime_UTR
TCCATTAGGGCCTTGCAACA+GGG 0.610956 4_1:-66295406 None:intergenic
TTTCGGAGGAAGTAGAGAGA+GGG 0.615323 4_1:-66293727 None:intergenic
TTGAATCAATTGAAGTTCAG+CGG 0.615959 4_1:+66295575 Msa0565430:five_prime_UTR
AACATCACGGCATGTTTCGG+AGG 0.617397 4_1:-66293741 None:intergenic
ATGCATTGAACTCTTTGAGG+CGG 0.622366 4_1:-66295672 None:intergenic
CACAAGGACATAAATGGCAA+CGG 0.622455 4_1:+66297611 Msa0565430:CDS
AAAAGTTCTCCAAGATGGCG+AGG 0.627849 4_1:+66294954 Msa0565430:intron
GTTTCGGAGGAAGTAGAGAG+AGG 0.629848 4_1:-66293728 None:intergenic
TTTCCTAAACGAAGGAGACA+CGG 0.632678 4_1:+66296365 Msa0565430:five_prime_UTR
ACATGGCAGCTTCCAGCATG+CGG 0.635420 4_1:-66298125 None:intergenic
GCTTCAAGATGGGTCTGGTG+TGG 0.637950 4_1:+66297556 Msa0565430:CDS
TGGAAAACGCACATATGGCA+AGG 0.638471 4_1:+66297427 Msa0565430:CDS
TGAGCAATTCCATTCAGACA+AGG 0.642285 4_1:+66294351 Msa0565430:five_prime_UTR
AATGAAGCGACTTCAAGACA+TGG 0.646610 4_1:+66295793 Msa0565430:five_prime_UTR
GTATGTAACACCAAAGCACA+AGG 0.647978 4_1:+66297595 Msa0565430:CDS
AGGAGAGTGTAGTTGCAAGG+AGG 0.651687 4_1:-66293640 None:intergenic
AAATGCAGTATGCTTCAGCA+AGG 0.653675 4_1:+66298025 Msa0565430:CDS
GCAGTAATGAGATGAATGAG+AGG 0.659301 4_1:+66293310 Msa0565430:five_prime_UTR
GCCAGGTATCCTGAGACCAA+CGG 0.663215 4_1:-66293874 None:intergenic
AGGCACACAACATCATCAAG+CGG 0.671393 4_1:+66294378 Msa0565430:five_prime_UTR
ATGAAGCGACTTCAAGACAT+GGG 0.671799 4_1:+66295794 Msa0565430:five_prime_UTR
CGGATGAAAATGGAGACCAT+GGG 0.672135 4_1:+66295017 Msa0565430:five_prime_UTR
TATCTCGTAGCTCAACATCA+CGG 0.689434 4_1:-66293754 None:intergenic
GCAGAAAGAAGATGAATGTG+TGG 0.715352 4_1:+66293504 Msa0565430:five_prime_UTR
ATTGGCAGTTAATAACACAG+AGG 0.766028 4_1:+66295353 Msa0565430:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATGAATTTTTATTATGT+GGG + chr4_1:66293960-66293979 Msa0565430:intron 10.0%
!! TAACTAGATTAAATTAAACT+CGG + chr4_1:66293390-66293409 Msa0565430:five_prime_UTR 15.0%
!! CATAATAAAAATTCATAAAC+TGG - chr4_1:66293959-66293978 None:intergenic 15.0%
!!! GTTTATGAATTTTTATTATG+TGG + chr4_1:66293959-66293978 Msa0565430:intron 15.0%
!!! TTTCTTATTTAGTTTAATTG+AGG - chr4_1:66294785-66294804 None:intergenic 15.0%
!! CTGAAAACAAAAAATTATTA+GGG - chr4_1:66295159-66295178 None:intergenic 15.0%
!! ACTGAAAACAAAAAATTATT+AGG - chr4_1:66295160-66295179 None:intergenic 15.0%
!! ATACAATTATATTAACATCA+GGG - chr4_1:66295187-66295206 None:intergenic 15.0%
!! AATACAATTATATTAACATC+AGG - chr4_1:66295188-66295207 None:intergenic 15.0%
!!! ACTATATGTTTTAACATTTT+CGG + chr4_1:66295220-66295239 Msa0565430:intron 15.0%
!!! AAATTTTTGAGATATATACA+TGG - chr4_1:66298145-66298164 None:intergenic 15.0%
!! TAGTAATACTTAACTAATAT+AGG + chr4_1:66298275-66298294 Msa0565430:three_prime_UTR 15.0%
!!! TTTTAAAAAATAAAAGAGGA+AGG - chr4_1:66298347-66298366 None:intergenic 15.0%
!!! AAAATGCAAAATTTTGATGT+GGG - chr4_1:66293918-66293937 None:intergenic 20.0%
!!! AAAAATGCAAAATTTTGATG+TGG - chr4_1:66293919-66293938 None:intergenic 20.0%
!!! AATTTTTATTATGTGGGTTT+TGG + chr4_1:66293966-66293985 Msa0565430:intron 20.0%
!! CACTTTATAATTCATATTGA+AGG + chr4_1:66294087-66294106 Msa0565430:intron 20.0%
!!! TTTTATTTGTTTCTTGGTTA+GGG + chr4_1:66295321-66295340 Msa0565430:intron 20.0%
!! AAAAGAAAAGGAAAAAGAAA+AGG - chr4_1:66296066-66296085 None:intergenic 20.0%
!! TTCGTTATATGAAAAAGAAA+AGG - chr4_1:66296090-66296109 None:intergenic 20.0%
!! TACATTGTGTAAAACATTAT+TGG + chr4_1:66296436-66296455 Msa0565430:intron 20.0%
!!! TTTTCCTTAAAATATGATGT+TGG + chr4_1:66296510-66296529 Msa0565430:intron 20.0%
!! ATTGAAGACAATAAAATTCA+AGG - chr4_1:66296557-66296576 None:intergenic 20.0%
!! TGATATAATCGATTAAATGT+TGG + chr4_1:66296801-66296820 Msa0565430:intron 20.0%
!!! GTTGATTTCTTTTTTACTAT+AGG + chr4_1:66296823-66296842 Msa0565430:intron 20.0%
!! TGTAAAAAAAATTCAGATGT+AGG - chr4_1:66297057-66297076 None:intergenic 20.0%
!! AATAAGTATAACATGAACAA+TGG - chr4_1:66297362-66297381 None:intergenic 20.0%
!!! TAATTTTTCTCTTCGTAAAA+TGG + chr4_1:66297454-66297473 Msa0565430:intron 20.0%
!!! TGATTGATTATTTTCTTTCA+GGG + chr4_1:66297512-66297531 Msa0565430:intron 20.0%
!! ATAAAAAACACAATTATACC+TGG - chr4_1:66297662-66297681 None:intergenic 20.0%
!! GTATATATCTCAAAAATTTC+AGG + chr4_1:66298146-66298165 Msa0565430:three_prime_UTR 20.0%
!! ATACTTAACTAATATAGGAA+AGG + chr4_1:66298280-66298299 Msa0565430:three_prime_UTR 20.0%
!! CTACATAAAAATGTAAAACA+AGG - chr4_1:66298309-66298328 None:intergenic 20.0%
!! TCATGTATTCATATATCAAT+AGG - chr4_1:66298392-66298411 None:intergenic 20.0%
! TAGTTATCAACAAAAAATGC+TGG - chr4_1:66293376-66293395 None:intergenic 25.0%
!!! CTTTAAGTTGGTAAAGTAAT+GGG - chr4_1:66294011-66294030 None:intergenic 25.0%
!!! ACTTTAAGTTGGTAAAGTAA+TGG - chr4_1:66294012-66294031 None:intergenic 25.0%
! CACTAATGAAAATTGAAGAA+TGG - chr4_1:66294460-66294479 None:intergenic 25.0%
!! TTTAATTGAGGTAAGAGTAT+AGG - chr4_1:66294773-66294792 None:intergenic 25.0%
!!! TGTTTTAACATTTTCGGTAT+AGG + chr4_1:66295226-66295245 Msa0565430:intron 25.0%
!!! TCTTGCTTTTATTTGTTTCT+TGG + chr4_1:66295315-66295334 Msa0565430:intron 25.0%
!!! CTTTTATTTGTTTCTTGGTT+AGG + chr4_1:66295320-66295339 Msa0565430:intron 25.0%
!! TTTATTTGTTTCTTGGTTAG+GGG + chr4_1:66295322-66295341 Msa0565430:intron 25.0%
! CGTTAAAAAACTAAAAGCAA+AGG - chr4_1:66295498-66295517 None:intergenic 25.0%
!! TTAACGTTCATGTTTAAGAT+TGG + chr4_1:66295512-66295531 Msa0565430:intron 25.0%
!!! TCTTTGTTTTTGCTTTCTTA+CGG + chr4_1:66295741-66295760 Msa0565430:intron 25.0%
! AAGATCCAATACAAAATATG+AGG - chr4_1:66295822-66295841 None:intergenic 25.0%
! AAAATGAAGATAAACGCATA+AGG + chr4_1:66295964-66295983 Msa0565430:intron 25.0%
! GAAAAGGAAAAAGAAAAGAT+GGG - chr4_1:66296062-66296081 None:intergenic 25.0%
! AGAAAAGGAAAAAGAAAAGA+TGG - chr4_1:66296063-66296082 None:intergenic 25.0%
!! AATTGAAGAAATACTGACTA+TGG - chr4_1:66296167-66296186 None:intergenic 25.0%
! CATTTCTCCACTAATAATAT+TGG + chr4_1:66296591-66296610 Msa0565430:intron 25.0%
! CAATTATGTTAGACATTTAC+CGG + chr4_1:66296635-66296654 Msa0565430:intron 25.0%
! TCATATGTTAAGTAAACAAC+CGG - chr4_1:66296657-66296676 None:intergenic 25.0%
! TATTTAGTAGATAACCAGTT+AGG + chr4_1:66296774-66296793 Msa0565430:intron 25.0%
! CATTCAAATAAGAAAAAGAG+AGG - chr4_1:66297127-66297146 None:intergenic 25.0%
! GTTCATGTTATACTTATTTC+AGG + chr4_1:66297364-66297383 Msa0565430:intron 25.0%
! AATAATCAATCAGTACAGAT+TGG - chr4_1:66297504-66297523 None:intergenic 25.0%
!! CTGATTGATTATTTTCTTTC+AGG + chr4_1:66297511-66297530 Msa0565430:intron 25.0%
!!! CCTTTTTTTCAAATTATTGC+TGG - chr4_1:66297796-66297815 None:intergenic 25.0%
! CCAGCAATAATTTGAAAAAA+AGG + chr4_1:66297793-66297812 Msa0565430:intron 25.0%
! TTCACAGTCAAATTGTAATA+TGG + chr4_1:66297940-66297959 Msa0565430:intron 25.0%
!! TCAAATGCAATCTTTTCTTT+TGG + chr4_1:66298071-66298090 Msa0565430:three_prime_UTR 25.0%
! ATGATGATGATGATGATGAT+GGG - chr4_1:66293576-66293595 None:intergenic 30.0%
AATGATGACTTTCTTGATAC+TGG + chr4_1:66293845-66293864 Msa0565430:five_prime_UTR 30.0%
TAAAGCAGCAAACTTTAAGT+TGG - chr4_1:66294023-66294042 None:intergenic 30.0%
ATGTGATTATGTCTATGTGT+CGG + chr4_1:66294185-66294204 Msa0565430:intron 30.0%
!!! TCATTGATGTTGTTTTTGTG+TGG + chr4_1:66294272-66294291 Msa0565430:intron 30.0%
CATTAGATGTTTATGCCTTA+CGG + chr4_1:66294507-66294526 Msa0565430:intron 30.0%
ATTAGATGTTTATGCCTTAC+GGG + chr4_1:66294508-66294527 Msa0565430:intron 30.0%
AACACCATCATATAAAACTG+AGG + chr4_1:66294564-66294583 Msa0565430:intron 30.0%
!! TTTGCCTCAGTTTTATATGA+TGG - chr4_1:66294571-66294590 None:intergenic 30.0%
AATAAATCTCATCTGCATTG+CGG + chr4_1:66294594-66294613 Msa0565430:intron 30.0%
GCAAAACAAGCAATAGTAAA+TGG - chr4_1:66294835-66294854 None:intergenic 30.0%
AAAAAAGTCCATATGCCATT+AGG - chr4_1:66294927-66294946 None:intergenic 30.0%
!! CTTTTAAAAGTTCTCCAAGA+TGG + chr4_1:66294949-66294968 Msa0565430:intron 30.0%
! TGGTATTGGAATAAACCTTA+GGG + chr4_1:66294988-66295007 Msa0565430:five_prime_UTR 30.0%
AATAAACCTTAGGGAAGTTA+CGG + chr4_1:66294997-66295016 Msa0565430:five_prime_UTR 30.0%
!! GAAGGTATTGGGATTAATAT+TGG + chr4_1:66295042-66295061 Msa0565430:five_prime_UTR 30.0%
GTATTGGGATTAATATTGGA+CGG + chr4_1:66295046-66295065 Msa0565430:five_prime_UTR 30.0%
!! GAAGATTTTTGAAAATGAGC+AGG - chr4_1:66295286-66295305 None:intergenic 30.0%
! TTATTTGTTTCTTGGTTAGG+GGG + chr4_1:66295323-66295342 Msa0565430:intron 30.0%
GTTAATAACACAGAGGTAAA+TGG + chr4_1:66295360-66295379 Msa0565430:five_prime_UTR 30.0%
ATTCTGATTCCAAGTTAGTT+TGG + chr4_1:66295460-66295479 Msa0565430:intron 30.0%
! TGAACTTCAATTGATTCAAC+AGG - chr4_1:66295574-66295593 None:intergenic 30.0%
TTGAATCAATTGAAGTTCAG+CGG + chr4_1:66295575-66295594 Msa0565430:five_prime_UTR 30.0%
TTGGATCTTAGAGATAATCT+TGG + chr4_1:66295833-66295852 Msa0565430:five_prime_UTR 30.0%
ATCTTAGAGATAATCTTGGT+GGG + chr4_1:66295837-66295856 Msa0565430:five_prime_UTR 30.0%
TTCAAAGCAGAAAGTAAGAA+TGG - chr4_1:66295902-66295921 None:intergenic 30.0%
TGGGAAAACAAAAACAATCT+TGG - chr4_1:66296043-66296062 None:intergenic 30.0%
ACAAATGCTCAAAATGAATG+TGG + chr4_1:66296122-66296141 Msa0565430:intron 30.0%
!!! TTTGCCCTTTTAATTTTTGC+AGG + chr4_1:66296320-66296339 Msa0565430:intron 30.0%
AAGCTTTGCAATTTCAATTC+CGG - chr4_1:66296346-66296365 None:intergenic 30.0%
! GTTTTACACAATGTATGCTT+TGG - chr4_1:66296431-66296450 None:intergenic 30.0%
TGTGTAAAACATTATTGGAG+AGG + chr4_1:66296441-66296460 Msa0565430:intron 30.0%
TATTGGAGAGGTTAAAAAAG+AGG + chr4_1:66296453-66296472 Msa0565430:intron 30.0%
TCCTTAAAATATGATGTTGG+AGG + chr4_1:66296513-66296532 Msa0565430:intron 30.0%
! ACCTCCAACATCATATTTTA+AGG - chr4_1:66296517-66296536 None:intergenic 30.0%
CATGAGACCAATATTATTAG+TGG - chr4_1:66296601-66296620 None:intergenic 30.0%
GATTATATCATCATCCTAAC+TGG - chr4_1:66296791-66296810 None:intergenic 30.0%
GTTAAAATTGACTGCTATCT+TGG + chr4_1:66296856-66296875 Msa0565430:intron 30.0%
!!! TCTTCAACTGTTGTTTTCAA+TGG + chr4_1:66296886-66296905 Msa0565430:intron 30.0%
GTTTCTAATGTCATCATGAT+AGG + chr4_1:66296936-66296955 Msa0565430:intron 30.0%
! GGAAAAACTTTTACAACAAG+AGG - chr4_1:66297036-66297055 None:intergenic 30.0%
TAAGAAAAAGAGAGGAGATT+AGG - chr4_1:66297119-66297138 None:intergenic 30.0%
GAAAATGAGAAAGAGAGAAA+AGG - chr4_1:66297901-66297920 None:intergenic 30.0%
!! TACTGCATTTTGAAAGATGT+TGG - chr4_1:66298015-66298034 None:intergenic 30.0%
ATAGACACATAACACAAGAT+TGG + chr4_1:66298175-66298194 Msa0565430:three_prime_UTR 30.0%
! AACAAAAAATGCTGGTTACG+TGG - chr4_1:66293368-66293387 None:intergenic 35.0%
!! TGTTGAAAGTATTGTTGGAG+TGG - chr4_1:66293552-66293571 None:intergenic 35.0%
! TGATGATGATGATGATGATG+GGG - chr4_1:66293575-66293594 None:intergenic 35.0%
! GATGATGATGATGATGATGA+TGG - chr4_1:66293577-66293596 None:intergenic 35.0%
GAAAGCTTAGTGGGAATAAT+TGG - chr4_1:66293608-66293627 None:intergenic 35.0%
TATTGCTAGCTAAGTAGCTT+AGG + chr4_1:66294048-66294067 Msa0565430:intron 35.0%
!!! TTGATGTTGTTTTTGTGTGG+TGG + chr4_1:66294275-66294294 Msa0565430:intron 35.0%
GGTGAAAGAAAACGTGTATA+AGG - chr4_1:66294425-66294444 None:intergenic 35.0%
!! TTTTCATTAGTGTTGCTCTG+TGG + chr4_1:66294468-66294487 Msa0565430:intron 35.0%
TGGTGTTCTTTGCAATATCA+GGG - chr4_1:66294551-66294570 None:intergenic 35.0%
ATGGTGTTCTTTGCAATATC+AGG - chr4_1:66294552-66294571 None:intergenic 35.0%
! GTGTTGTCTGAGTTTGAAAT+TGG + chr4_1:66294743-66294762 Msa0565430:intron 35.0%
TTCTCGTGTTTCTTACCTAA+TGG + chr4_1:66294909-66294928 Msa0565430:intron 35.0%
GTTTCTTACCTAATGGCATA+TGG + chr4_1:66294916-66294935 Msa0565430:intron 35.0%
! CTGGTATTGGAATAAACCTT+AGG + chr4_1:66294987-66295006 Msa0565430:five_prime_UTR 35.0%
ATTGGCAGTTAATAACACAG+AGG + chr4_1:66295353-66295372 Msa0565430:five_prime_UTR 35.0%
TAGTCACAGATGTTCCATTA+GGG - chr4_1:66295422-66295441 None:intergenic 35.0%
ATAGTCACAGATGTTCCATT+AGG - chr4_1:66295423-66295442 None:intergenic 35.0%
!! ATCTGTGACTATTCAGGTTT+TGG + chr4_1:66295431-66295450 Msa0565430:intron 35.0%
! CACTTTCAGTTTGTTCCATA+CGG - chr4_1:66295630-66295649 None:intergenic 35.0%
GCTCGAAAAGATTTAGTCAT+CGG + chr4_1:66295697-66295716 Msa0565430:five_prime_UTR 35.0%
GATCTTAGAGATAATCTTGG+TGG + chr4_1:66295836-66295855 Msa0565430:five_prime_UTR 35.0%
AAGAATGGTATAGGTAGACA+GGG - chr4_1:66295887-66295906 None:intergenic 35.0%
TAAGAATGGTATAGGTAGAC+AGG - chr4_1:66295888-66295907 None:intergenic 35.0%
GCAGAAAGTAAGAATGGTAT+AGG - chr4_1:66295896-66295915 None:intergenic 35.0%
AGGGCAAACAAAACTGAATT+AGG - chr4_1:66296308-66296327 None:intergenic 35.0%
TCTTCACTCTGTACAGAAAA+GGG - chr4_1:66296687-66296706 None:intergenic 35.0%
ATCTTCACTCTGTACAGAAA+AGG - chr4_1:66296688-66296707 None:intergenic 35.0%
GTGTGAGCTAATCGATAAAA+TGG + chr4_1:66296737-66296756 Msa0565430:intron 35.0%
!!! CTGTTGTTTTCAATGGATTG+TGG + chr4_1:66296893-66296912 Msa0565430:intron 35.0%
AAGAGAGGAGATTAGGAAAT+CGG - chr4_1:66297112-66297131 None:intergenic 35.0%
TACAGTATGTCGTTGTTTAG+TGG + chr4_1:66297185-66297204 Msa0565430:five_prime_UTR 35.0%
! CTTTTTGATCTGTATCATGC+AGG + chr4_1:66297239-66297258 Msa0565430:exon 35.0%
CTTGAAGCTCAAATACAGAT+TGG - chr4_1:66297544-66297563 None:intergenic 35.0%
TCTGTATTTGAGCTTCAAGA+TGG + chr4_1:66297545-66297564 Msa0565430:CDS 35.0%
CTGTATTTGAGCTTCAAGAT+GGG + chr4_1:66297546-66297565 Msa0565430:CDS 35.0%
CAATTATACCTGGAAGTTTC+TGG - chr4_1:66297652-66297671 None:intergenic 35.0%
ATGTAATCGAGTGTCAATGT+CGG + chr4_1:66297826-66297845 Msa0565430:intron 35.0%
CAAGGATAAACCAGTTTCTA+CGG + chr4_1:66298043-66298062 Msa0565430:exon 35.0%
ACACATAACACAAGATTGGT+AGG + chr4_1:66298179-66298198 Msa0565430:three_prime_UTR 35.0%
CATACAGGAGTTCGTATTTA+AGG + chr4_1:66298221-66298240 Msa0565430:three_prime_UTR 35.0%
!! ACATGACACTGTCACTTTAT+TGG + chr4_1:66298406-66298425 Msa0565430:three_prime_UTR 35.0%
GCAGTAATGAGATGAATGAG+AGG + chr4_1:66293310-66293329 Msa0565430:five_prime_UTR 40.0%
ATGAGATGAATGAGAGGCTA+TGG + chr4_1:66293316-66293335 Msa0565430:five_prime_UTR 40.0%
GCAGAAAGAAGATGAATGTG+TGG + chr4_1:66293504-66293523 Msa0565430:five_prime_UTR 40.0%
!! TGAAAGTATTGTTGGAGTGG+TGG - chr4_1:66293549-66293568 None:intergenic 40.0%
!! TGGGGTGTTGAAAGTATTGT+TGG - chr4_1:66293557-66293576 None:intergenic 40.0%
TTGTGAAGGGAAAGCTTAGT+GGG - chr4_1:66293617-66293636 None:intergenic 40.0%
TATCTCGTAGCTCAACATCA+CGG - chr4_1:66293757-66293776 None:intergenic 40.0%
! TACCAATGAAGGACTTGTTC+AGG + chr4_1:66293805-66293824 Msa0565430:five_prime_UTR 40.0%
TTCCTGAACAAGTCCTTCAT+TGG - chr4_1:66293810-66293829 None:intergenic 40.0%
!! TTTGGTTTGTAGCTTGGAGT+TGG + chr4_1:66293984-66294003 Msa0565430:intron 40.0%
CGAGTAAATGTCAGAGACTT+AGG - chr4_1:66294117-66294136 None:intergenic 40.0%
! TTATGTCTATGTGTCGGTGT+TGG + chr4_1:66294191-66294210 Msa0565430:intron 40.0%
! GTTTTTGTGTGGTGGTTAGT+TGG + chr4_1:66294283-66294302 Msa0565430:intron 40.0%
TGAGCAATTCCATTCAGACA+AGG + chr4_1:66294351-66294370 Msa0565430:five_prime_UTR 40.0%
TTCCATTCAGACAAGGTCAA+AGG + chr4_1:66294358-66294377 Msa0565430:five_prime_UTR 40.0%
! TACACGTTTTCTTTCACCTG+AGG + chr4_1:66294427-66294446 Msa0565430:five_prime_UTR 40.0%
TGTTCTTTGCAATATCAGGG+GGG - chr4_1:66294548-66294567 None:intergenic 40.0%
GTGTTCTTTGCAATATCAGG+GGG - chr4_1:66294549-66294568 None:intergenic 40.0%
GGTGTTCTTTGCAATATCAG+GGG - chr4_1:66294550-66294569 None:intergenic 40.0%
TGTTCAGCAGTTTCCATTGT+AGG - chr4_1:66294651-66294670 None:intergenic 40.0%
CACTACAACATGGCGTAAAT+GGG + chr4_1:66294700-66294719 Msa0565430:intron 40.0%
! AAGAAACACGAGAAGCACAA+TGG - chr4_1:66294903-66294922 None:intergenic 40.0%
AGGTATGACATGACTGGTAT+TGG + chr4_1:66294974-66294993 Msa0565430:five_prime_UTR 40.0%
TTTCATCCGTAACTTCCCTA+AGG - chr4_1:66295006-66295025 None:intergenic 40.0%
AGGGAAGTTACGGATGAAAA+TGG + chr4_1:66295007-66295026 Msa0565430:five_prime_UTR 40.0%
GACAACTCTACCAATTCACT+CGG + chr4_1:66295106-66295125 Msa0565430:intron 40.0%
AAGACATTAGCCGAGTGAAT+TGG - chr4_1:66295119-66295138 None:intergenic 40.0%
TGGTTAGGGGGATGAAATAT+TGG + chr4_1:66295335-66295354 Msa0565430:intron 40.0%
TGGAACATCTGTGACTATTC+AGG + chr4_1:66295425-66295444 Msa0565430:five_prime_UTR 40.0%
CGTATGGAACAAACTGAAAG+TGG + chr4_1:66295628-66295647 Msa0565430:five_prime_UTR 40.0%
!! AAAGTGGTGCTGCTCATATT+GGG + chr4_1:66295644-66295663 Msa0565430:five_prime_UTR 40.0%
! ATGCATTGAACTCTTTGAGG+CGG - chr4_1:66295675-66295694 None:intergenic 40.0%
CCAATGCATTGAACTCTTTG+AGG - chr4_1:66295678-66295697 None:intergenic 40.0%
CCTCAAAGAGTTCAATGCAT+TGG + chr4_1:66295675-66295694 Msa0565430:five_prime_UTR 40.0%
AATGAAGCGACTTCAAGACA+TGG + chr4_1:66295793-66295812 Msa0565430:five_prime_UTR 40.0%
ATGAAGCGACTTCAAGACAT+GGG + chr4_1:66295794-66295813 Msa0565430:five_prime_UTR 40.0%
! GGGTGCCTCATATTTTGTAT+TGG + chr4_1:66295814-66295833 Msa0565430:five_prime_UTR 40.0%
AGTTGTGCTCAAACATGCTT+TGG + chr4_1:66296217-66296236 Msa0565430:intron 40.0%
CCGGCCTGCAAAAATTAAAA+GGG - chr4_1:66296327-66296346 None:intergenic 40.0%
!!! CCCTTTTAATTTTTGCAGGC+CGG + chr4_1:66296324-66296343 Msa0565430:intron 40.0%
TCCGGCCTGCAAAAATTAAA+AGG - chr4_1:66296328-66296347 None:intergenic 40.0%
! GCAAAGCTTTTCCTAAACGA+AGG + chr4_1:66296357-66296376 Msa0565430:five_prime_UTR 40.0%
TTTCCTAAACGAAGGAGACA+CGG + chr4_1:66296365-66296384 Msa0565430:five_prime_UTR 40.0%
TTCACTCTGTACAGAAAAGG+GGG - chr4_1:66296685-66296704 None:intergenic 40.0%
CTTCACTCTGTACAGAAAAG+GGG - chr4_1:66296686-66296705 None:intergenic 40.0%
! CTTTTACAACAAGAGGAGCA+CGG - chr4_1:66297029-66297048 None:intergenic 40.0%
AGAGAGGAGATTAGGAAATC+GGG - chr4_1:66297111-66297130 None:intergenic 40.0%
CTAGTGCTAGTGAAATAGTG+AGG + chr4_1:66297283-66297302 Msa0565430:intron 40.0%
TCTGGTGTGGTTATAACTGT+TGG + chr4_1:66297569-66297588 Msa0565430:CDS 40.0%
CTGGTGTGGTTATAACTGTT+GGG + chr4_1:66297570-66297589 Msa0565430:CDS 40.0%
GTATGTAACACCAAAGCACA+AGG + chr4_1:66297595-66297614 Msa0565430:CDS 40.0%
CCATTTATGTCCTTGTGCTT+TGG - chr4_1:66297608-66297627 None:intergenic 40.0%
CCAAAGCACAAGGACATAAA+TGG + chr4_1:66297605-66297624 Msa0565430:CDS 40.0%
CACAAGGACATAAATGGCAA+CGG + chr4_1:66297611-66297630 Msa0565430:CDS 40.0%
CTTTCTTTCTCTCCTTGTCT+CGG + chr4_1:66297687-66297706 Msa0565430:intron 40.0%
TTTCTTTCTCTCCTTGTCTC+GGG + chr4_1:66297688-66297707 Msa0565430:intron 40.0%
AAATGCAGTATGCTTCAGCA+AGG + chr4_1:66298025-66298044 Msa0565430:CDS 40.0%
TTTGAATGCACCGTAGAAAC+TGG - chr4_1:66298056-66298075 None:intergenic 40.0%
TGGTAGGAAGAAGTGATCTA+AGG + chr4_1:66298195-66298214 Msa0565430:three_prime_UTR 40.0%
! AGTGATCTAAGGAAGCATAC+AGG + chr4_1:66298206-66298225 Msa0565430:three_prime_UTR 40.0%
AAGTTGCTTCAGTTATGCTC+AGG - chr4_1:66298249-66298268 None:intergenic 40.0%
TGAGCATAACTGAAGCAACT+TGG + chr4_1:66298248-66298267 Msa0565430:three_prime_UTR 40.0%
GTTGTGAAGGGAAAGCTTAG+TGG - chr4_1:66293618-66293637 None:intergenic 45.0%
! CAAAGGAGAGTGTAGTTGCA+AGG - chr4_1:66293646-66293665 None:intergenic 45.0%
CTTGCAACTACACTCTCCTT+TGG + chr4_1:66293644-66293663 Msa0565430:five_prime_UTR 45.0%
GAAGAGCAGATGCAGAAGAA+GGG - chr4_1:66293688-66293707 None:intergenic 45.0%
TGAAGAGCAGATGCAGAAGA+AGG - chr4_1:66293689-66293708 None:intergenic 45.0%
TTTCGGAGGAAGTAGAGAGA+GGG - chr4_1:66293730-66293749 None:intergenic 45.0%
CTCAACATCACGGCATGTTT+CGG - chr4_1:66293747-66293766 None:intergenic 45.0%
! CCTTCATTGGTAACAACCTC+AGG - chr4_1:66293797-66293816 None:intergenic 45.0%
CCTGAGGTTGTTACCAATGA+AGG + chr4_1:66293794-66293813 Msa0565430:five_prime_UTR 45.0%
! AAGGACTTGTTCAGGAAGCT+TGG + chr4_1:66293813-66293832 Msa0565430:five_prime_UTR 45.0%
! GAACATTGATGATACCTGCC+AGG - chr4_1:66293894-66293913 None:intergenic 45.0%
!!! GTGGGTTTTGGTTTGTAGCT+TGG + chr4_1:66293978-66293997 Msa0565430:intron 45.0%
TCTGGTGTTTGTGTCTGTGT+CGG + chr4_1:66294221-66294240 Msa0565430:intron 45.0%
!! TGGTGGTTAGTTGGTGCTAA+TGG + chr4_1:66294292-66294311 Msa0565430:intron 45.0%
TGCCTTTGACCTTGTCTGAA+TGG - chr4_1:66294363-66294382 None:intergenic 45.0%
AGGCACACAACATCATCAAG+CGG + chr4_1:66294378-66294397 Msa0565430:five_prime_UTR 45.0%
TGTATAAGGATCGCCCAAAC+TGG - chr4_1:66294411-66294430 None:intergenic 45.0%
! ACGTTTTCTTTCACCTGAGG+AGG + chr4_1:66294430-66294449 Msa0565430:five_prime_UTR 45.0%
!! GAAGAATGGATTACCTCCTC+AGG - chr4_1:66294446-66294465 None:intergenic 45.0%
! TCATTAGTGTTGCTCTGTGG+AGG + chr4_1:66294471-66294490 Msa0565430:intron 45.0%
CCATTTACGCCATGTTGTAG+TGG - chr4_1:66294702-66294721 None:intergenic 45.0%
CCACTACAACATGGCGTAAA+TGG + chr4_1:66294699-66294718 Msa0565430:intron 45.0%
AAAAGTTCTCCAAGATGGCG+AGG + chr4_1:66294954-66294973 Msa0565430:intron 45.0%
ACGGATGAAAATGGAGACCA+TGG + chr4_1:66295016-66295035 Msa0565430:five_prime_UTR 45.0%
CGGATGAAAATGGAGACCAT+GGG + chr4_1:66295017-66295036 Msa0565430:five_prime_UTR 45.0%
! GAAGTATCATCCCTGTTGCA+AGG + chr4_1:66295396-66295415 Msa0565430:five_prime_UTR 45.0%
CTAAAAGCAAAGGCTAGAGC+AGG - chr4_1:66295488-66295507 None:intergenic 45.0%
AGCTCAAGCATGGAAACTGT+GGG + chr4_1:66295548-66295567 Msa0565430:intron 45.0%
TGAAGTTCAGCGGCAATTTG+TGG + chr4_1:66295585-66295604 Msa0565430:five_prime_UTR 45.0%
TGTTCCATACGGTAAGAGAC+TGG - chr4_1:66295619-66295638 None:intergenic 45.0%
!! GAAAGTGGTGCTGCTCATAT+TGG + chr4_1:66295643-66295662 Msa0565430:five_prime_UTR 45.0%
ACGTGTGTTCGTGCAGATTA+TGG + chr4_1:66296004-66296023 Msa0565430:intron 45.0%
TTACCGTGTCTCCTTCGTTT+AGG - chr4_1:66296371-66296390 None:intergenic 45.0%
TGATAGGTCATCTACACTGC+TGG + chr4_1:66296952-66296971 Msa0565430:intron 45.0%
!! AACAACAGCTTGCTGGAACT+GGG - chr4_1:66296986-66297005 None:intergenic 45.0%
!! AAACAACAGCTTGCTGGAAC+TGG - chr4_1:66296987-66297006 None:intergenic 45.0%
! GTTCCAGCAAGCTGTTGTTT+CGG + chr4_1:66296987-66297006 Msa0565430:five_prime_UTR 45.0%
TATCCGAAACAACAGCTTGC+TGG - chr4_1:66296993-66297012 None:intergenic 45.0%
AATTGTCGAGCTGTTCTCGT+TGG + chr4_1:66297407-66297426 Msa0565430:CDS 45.0%
CTCGTTGGAAAACGCACATA+TGG + chr4_1:66297422-66297441 Msa0565430:CDS 45.0%
TGGAAAACGCACATATGGCA+AGG + chr4_1:66297427-66297446 Msa0565430:CDS 45.0%
TTTGAGCTTCAAGATGGGTC+TGG + chr4_1:66297551-66297570 Msa0565430:CDS 45.0%
! ACCTGGAAGTTTCTGGAAGT+CGG - chr4_1:66297645-66297664 None:intergenic 45.0%
TTCTTTCTCTCCTTGTCTCG+GGG + chr4_1:66297689-66297708 Msa0565430:intron 45.0%
!! AAGCATTGGAGTTGCTACCA+TGG + chr4_1:66297713-66297732 Msa0565430:intron 45.0%
! AGCATTGGAGTTGCTACCAT+GGG + chr4_1:66297714-66297733 Msa0565430:intron 45.0%
ACAATCTAGTGCTAGTCCCA+TGG - chr4_1:66297733-66297752 None:intergenic 45.0%
CATCCCAAGCTGCAAATACA+GGG - chr4_1:66297985-66298004 None:intergenic 45.0%
TCATCCCAAGCTGCAAATAC+AGG - chr4_1:66297986-66298005 None:intergenic 45.0%
! CTTCTAAAGAATCCGCATGC+TGG + chr4_1:66298113-66298132 Msa0565430:three_prime_UTR 45.0%
!!! TTAATTTTAAAAAATAAAAG+AGG - chr4_1:66298351-66298370 None:intergenic 5.0%
!! TGCAAGGAGGGTGTTGTGAA+GGG - chr4_1:66293630-66293649 None:intergenic 50.0%
!! TTGCAAGGAGGGTGTTGTGA+AGG - chr4_1:66293631-66293650 None:intergenic 50.0%
! GGAGAGTGTAGTTGCAAGGA+GGG - chr4_1:66293642-66293661 None:intergenic 50.0%
! AGGAGAGTGTAGTTGCAAGG+AGG - chr4_1:66293643-66293662 None:intergenic 50.0%
GGGGGAGAAGAATAAGCCAA+AGG - chr4_1:66293663-66293682 None:intergenic 50.0%
AGATGCAGAAGAAGGGAAGG+GGG - chr4_1:66293681-66293700 None:intergenic 50.0%
CAGATGCAGAAGAAGGGAAG+GGG - chr4_1:66293682-66293701 None:intergenic 50.0%
GCAGATGCAGAAGAAGGGAA+GGG - chr4_1:66293683-66293702 None:intergenic 50.0%
AGCAGATGCAGAAGAAGGGA+AGG - chr4_1:66293684-66293703 None:intergenic 50.0%
GTAGAGAGAGGGATTGGAAG+AGG - chr4_1:66293719-66293738 None:intergenic 50.0%
GAGGAAGTAGAGAGAGGGAT+TGG - chr4_1:66293725-66293744 None:intergenic 50.0%
GTTTCGGAGGAAGTAGAGAG+AGG - chr4_1:66293731-66293750 None:intergenic 50.0%
AACATCACGGCATGTTTCGG+AGG - chr4_1:66293744-66293763 None:intergenic 50.0%
GTAACAACCTCAGGAGCAGT+TGG - chr4_1:66293788-66293807 None:intergenic 50.0%
TTGATACTGGTCGCAACCGT+TGG + chr4_1:66293858-66293877 Msa0565430:five_prime_UTR 50.0%
! CTGTGTCGGTGCTTCTTCAT+AGG + chr4_1:66294235-66294254 Msa0565430:intron 50.0%
CAACATCATCAAGCGGATGC+TGG + chr4_1:66294385-66294404 Msa0565430:five_prime_UTR 50.0%
TCTTTGCAATATCAGGGGGG+TGG - chr4_1:66294545-66294564 None:intergenic 50.0%
CCATTGTAGGTGCGACATCA+AGG - chr4_1:66294638-66294657 None:intergenic 50.0%
CCTTGATGTCGCACCTACAA+TGG + chr4_1:66294635-66294654 Msa0565430:intron 50.0%
! CTGTCTGTGCCACTACAACA+TGG + chr4_1:66294690-66294709 Msa0565430:intron 50.0%
CATGTCATACCTCGCCATCT+TGG - chr4_1:66294966-66294985 None:intergenic 50.0%
ATGGCGAGGTATGACATGAC+TGG + chr4_1:66294968-66294987 Msa0565430:five_prime_UTR 50.0%
! AAATGGAGACCATGGGCTGA+AGG + chr4_1:66295024-66295043 Msa0565430:five_prime_UTR 50.0%
! AGACCATGGGCTGAAGGTAT+TGG + chr4_1:66295030-66295049 Msa0565430:five_prime_UTR 50.0%
!! GACCATGGGCTGAAGGTATT+GGG + chr4_1:66295031-66295050 Msa0565430:five_prime_UTR 50.0%
ATCCCAATACCTTCAGCCCA+TGG - chr4_1:66295036-66295055 None:intergenic 50.0%
! TCATTCTGCTGGTGTCAGAC+AGG + chr4_1:66295075-66295094 Msa0565430:five_prime_UTR 50.0%
TCCATTAGGGCCTTGCAACA+GGG - chr4_1:66295409-66295428 None:intergenic 50.0%
TTCCATTAGGGCCTTGCAAC+AGG - chr4_1:66295410-66295429 None:intergenic 50.0%
GAGCAGGTGCCAAACTAACT+TGG - chr4_1:66295472-66295491 None:intergenic 50.0%
CGTTGTTGTCAGCTCAAGCA+TGG + chr4_1:66295538-66295557 Msa0565430:intron 50.0%
CAGCTCAAGCATGGAAACTG+TGG + chr4_1:66295547-66295566 Msa0565430:intron 50.0%
CACACCAGTCTCTTACCGTA+TGG + chr4_1:66295612-66295631 Msa0565430:five_prime_UTR 50.0%
!! TAATCTTGGTGGGCTAGTGC+AGG + chr4_1:66295847-66295866 Msa0565430:five_prime_UTR 50.0%
TCGTGCAGATTATGGCTGAG+AGG + chr4_1:66296012-66296031 Msa0565430:intron 50.0%
ACTCTGTACAGAAAAGGGGG+AGG - chr4_1:66296682-66296701 None:intergenic 50.0%
!! ACAACAGCTTGCTGGAACTG+GGG - chr4_1:66296985-66297004 None:intergenic 50.0%
! ACAAGAGGAGCACGGATCAA+TGG - chr4_1:66297021-66297040 None:intergenic 50.0%
! CCTGGAAGTTTCTGGAAGTC+GGG - chr4_1:66297644-66297663 None:intergenic 50.0%
CCAAGCTGCAAATACAGGGA+GGG - chr4_1:66297981-66298000 None:intergenic 50.0%
CCTCCCTGTATTTGCAGCTT+GGG + chr4_1:66297979-66297998 Msa0565430:intron 50.0%
! GGAGTGGTGGAGAGTGATGA+AGG - chr4_1:66293536-66293555 None:intergenic 55.0%
GAGAGAGGGATTGGAAGAGG+AGG - chr4_1:66293716-66293735 None:intergenic 55.0%
! ACCGTTGGTCTCAGGATACC+TGG + chr4_1:66293873-66293892 Msa0565430:five_prime_UTR 55.0%
GCCAGGTATCCTGAGACCAA+CGG - chr4_1:66293877-66293896 None:intergenic 55.0%
TTGGTCTCAGGATACCTGGC+AGG + chr4_1:66293877-66293896 Msa0565430:five_prime_UTR 55.0%
AAGCGGATGCTGGCCAGTTT+GGG + chr4_1:66294395-66294414 Msa0565430:five_prime_UTR 55.0%
CTGACACCAGCAGAATGAGC+AGG - chr4_1:66295073-66295092 None:intergenic 55.0%
TCCCTGTTGCAAGGCCCTAA+TGG + chr4_1:66295405-66295424 Msa0565430:five_prime_UTR 55.0%
!! CAACAGCTTGCTGGAACTGG+GGG - chr4_1:66296984-66297003 None:intergenic 55.0%
GCTTCAAGATGGGTCTGGTG+TGG + chr4_1:66297556-66297575 Msa0565430:CDS 55.0%
CCCGACTTCCAGAAACTTCC+AGG + chr4_1:66297641-66297660 Msa0565430:CDS 55.0%
CCCTCCCTGTATTTGCAGCT+TGG + chr4_1:66297978-66297997 Msa0565430:intron 55.0%
CCCAAGCTGCAAATACAGGG+AGG - chr4_1:66297982-66298001 None:intergenic 55.0%
ACATGGCAGCTTCCAGCATG+CGG - chr4_1:66298128-66298147 None:intergenic 55.0%
CGCAGTTCCAACTGCTCCTG+AGG + chr4_1:66293778-66293797 Msa0565430:five_prime_UTR 60.0%
! TGGTCGCAACCGTTGGTCTC+AGG + chr4_1:66293865-66293884 Msa0565430:five_prime_UTR 60.0%
!! GTCGGTGTTGGTGTCGAGTC+TGG + chr4_1:66294203-66294222 Msa0565430:intron 60.0%
CAAGCGGATGCTGGCCAGTT+TGG + chr4_1:66294394-66294413 Msa0565430:five_prime_UTR 60.0%
TGGCATGGCAAGTGCCCGTA+AGG - chr4_1:66294525-66294544 None:intergenic 60.0%
GCAATATCAGGGGGGTGGCA+TGG - chr4_1:66294540-66294559 None:intergenic 60.0%
GACGGTCCTGCTCATTCTGC+TGG + chr4_1:66295064-66295083 Msa0565430:five_prime_UTR 60.0%
CCAATGCTTGCCCCGAGACA+AGG - chr4_1:66297702-66297721 None:intergenic 60.0%
CCTTGTCTCGGGGCAAGCAT+TGG + chr4_1:66297699-66297718 Msa0565430:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 66293268 66298436 66293268 ID=Msa0565430;Name=Msa0565430
chr4_1 mRNA 66293268 66298436 66293268 ID=Msa0565430-mRNA-1;Parent=Msa0565430;Name=Msa0565430-mRNA-1;_AED=0.15;_eAED=0.15;_QI=1582|1|1|1|1|0.90|11|385|97
chr4_1 exon 66293268 66293898 66293268 ID=Msa0565430-mRNA-1:exon:21475;Parent=Msa0565430-mRNA-1
chr4_1 exon 66294332 66294451 66294332 ID=Msa0565430-mRNA-1:exon:21476;Parent=Msa0565430-mRNA-1
chr4_1 exon 66294959 66295096 66294959 ID=Msa0565430-mRNA-1:exon:21477;Parent=Msa0565430-mRNA-1
chr4_1 exon 66295342 66295446 66295342 ID=Msa0565430-mRNA-1:exon:21478;Parent=Msa0565430-mRNA-1
chr4_1 exon 66295550 66295718 66295550 ID=Msa0565430-mRNA-1:exon:21479;Parent=Msa0565430-mRNA-1
chr4_1 exon 66295792 66295868 66295792 ID=Msa0565430-mRNA-1:exon:21480;Parent=Msa0565430-mRNA-1
chr4_1 exon 66296342 66296386 66296342 ID=Msa0565430-mRNA-1:exon:21481;Parent=Msa0565430-mRNA-1
chr4_1 exon 66296958 66297299 66296958 ID=Msa0565430-mRNA-1:exon:21482;Parent=Msa0565430-mRNA-1
chr4_1 exon 66297386 66297448 66297386 ID=Msa0565430-mRNA-1:exon:21483;Parent=Msa0565430-mRNA-1
chr4_1 exon 66297533 66297662 66297533 ID=Msa0565430-mRNA-1:exon:21484;Parent=Msa0565430-mRNA-1
chr4_1 exon 66297996 66298436 66297996 ID=Msa0565430-mRNA-1:exon:21485;Parent=Msa0565430-mRNA-1
chr4_1 five_prime_UTR 66293268 66293898 66293268 ID=Msa0565430-mRNA-1:five_prime_utr;Parent=Msa0565430-mRNA-1
chr4_1 five_prime_UTR 66294332 66294451 66294332 ID=Msa0565430-mRNA-1:five_prime_utr;Parent=Msa0565430-mRNA-1
chr4_1 five_prime_UTR 66294959 66295096 66294959 ID=Msa0565430-mRNA-1:five_prime_utr;Parent=Msa0565430-mRNA-1
chr4_1 five_prime_UTR 66295342 66295446 66295342 ID=Msa0565430-mRNA-1:five_prime_utr;Parent=Msa0565430-mRNA-1
chr4_1 five_prime_UTR 66295550 66295718 66295550 ID=Msa0565430-mRNA-1:five_prime_utr;Parent=Msa0565430-mRNA-1
chr4_1 five_prime_UTR 66295792 66295868 66295792 ID=Msa0565430-mRNA-1:five_prime_utr;Parent=Msa0565430-mRNA-1
chr4_1 five_prime_UTR 66296342 66296386 66296342 ID=Msa0565430-mRNA-1:five_prime_utr;Parent=Msa0565430-mRNA-1
chr4_1 five_prime_UTR 66296958 66297254 66296958 ID=Msa0565430-mRNA-1:five_prime_utr;Parent=Msa0565430-mRNA-1
chr4_1 CDS 66297255 66297299 66297255 ID=Msa0565430-mRNA-1:cds;Parent=Msa0565430-mRNA-1
chr4_1 CDS 66297386 66297448 66297386 ID=Msa0565430-mRNA-1:cds;Parent=Msa0565430-mRNA-1
chr4_1 CDS 66297533 66297662 66297533 ID=Msa0565430-mRNA-1:cds;Parent=Msa0565430-mRNA-1
chr4_1 CDS 66297996 66298051 66297996 ID=Msa0565430-mRNA-1:cds;Parent=Msa0565430-mRNA-1
chr4_1 three_prime_UTR 66298052 66298436 66298052 ID=Msa0565430-mRNA-1:three_prime_utr;Parent=Msa0565430-mRNA-1
Gene Sequence

>Msa0565430

ATGCAGGTTTTAGTGAATGACAAGACTGCTAGTGCTAGTGAAATAGTTGCTTCTGCACTTCACGATAATTGTCGAGCTGTTCTCGTTGGAAAACGCACATATGGCAAGGGCTTAATCCAATCTGTATTTGAGCTTCAAGATGGGTCTGGTGTGGTTATAACTGTTGGGAAGTATGTAACACCAAAGCACAAGGACATAAATGGCAACGGAATAGTGCCCGACTTCCAGAAACTTCCAGCTTGGGATGATGTCAGCCAACATCTTTCAAAATGCAGTATGCTTCAGCAAGGATAA

Protein sequence

>Msa0565430

MQVLVNDKTASASEIVASALHDNCRAVLVGKRTYGKGLIQSVFELQDGSGVVITVGKYVTPKHKDINGNGIVPDFQKLPAWDDVSQHLSKCSMLQQG*