AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0565370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0565370 MtrunA17_Chr8g0380251 98.947 95 1 0 3 97 371 465 8.93e-63 197
Msa0565370 MtrunA17_Chr1g0186021 62.162 74 28 0 1 74 395 468 2.05e-25 98.2
Msa0565370 MtrunA17_Chr1g0173891 60.811 74 29 0 3 76 253 326 5.82e-24 93.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0565370 AT5G46390.2 78.723 94 20 0 3 96 395 488 3.48e-50 165
Msa0565370 AT4G17740.2 62.162 74 28 0 1 74 397 470 1.62e-24 95.9
Msa0565370 AT4G17740.1 62.162 74 28 0 1 74 407 480 1.92e-24 95.9
Msa0565370 AT3G57680.1 60.811 74 29 0 3 76 399 472 8.74e-24 94.0
Msa0565370 AT3G57680.3 60.811 74 29 0 3 76 250 323 1.04e-23 92.8
Msa0565370 AT3G57680.2 60.811 74 29 0 3 76 250 323 1.04e-23 92.8

Find 155 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATGACACTGTCACTTTAT+TGG 0.138263 4_1:-66254897 Msa0565370:three_prime_UTR
CAATTATACCTGGAAGTTTC+TGG 0.170732 4_1:+66255653 None:intergenic
CATACAGGAGTTCGTATTTA+AGG 0.188220 4_1:-66255082 Msa0565370:three_prime_UTR
CAAGCGGATGCTGGCCAGTT+TGG 0.236470 4_1:-66258906 Msa0565370:five_prime_UTR
TGGAACATCTGTGACTATTC+AGG 0.258305 4_1:-66257877 Msa0565370:intron
GAAAGCTTAGTGGGAATAAT+TGG 0.279646 4_1:+66259695 None:intergenic
GAAGGTATTGGGATTAATAT+TGG 0.289827 4_1:-66258259 Msa0565370:five_prime_UTR
TTCCATTAGGGCCTTGCAAC+AGG 0.291802 4_1:+66257895 None:intergenic
AAACAACAGCTTGCTGGAAC+TGG 0.294485 4_1:+66256318 None:intergenic
AAGAGAGGAGATTAGGAAAT+CGG 0.296703 4_1:+66256193 None:intergenic
GTTAATAACACAGAGGTAAA+TGG 0.308388 4_1:-66257942 Msa0565370:five_prime_UTR
AATGATGACTTTCTTGATAC+TGG 0.317286 4_1:-66259455 Msa0565370:five_prime_UTR
CCAAAGCACAAGGACATAAA+TGG 0.324637 4_1:-66255697 Msa0565370:CDS
AAGCTTTGCAATTTCAATTC+CGG 0.328383 4_1:+66256959 None:intergenic
CCCGACTTCCAGAAACTTCC+AGG 0.339545 4_1:-66255661 Msa0565370:intron
TTACCGTGTCTCCTTCGTTT+AGG 0.341822 4_1:+66256934 None:intergenic
GAAAGTGGTGCTGCTCATAT+TGG 0.341972 4_1:-66257659 Msa0565370:five_prime_UTR
GGTGAAAGAAAACGTGTATA+AGG 0.347877 4_1:+66258878 None:intergenic
TGGTAGGAAGAAGTGATCTA+AGG 0.357565 4_1:-66255108 Msa0565370:three_prime_UTR
AAGCGGATGCTGGCCAGTTT+GGG 0.360662 4_1:-66258905 Msa0565370:five_prime_UTR
TCCCTGTTGCAAGGCCCTAA+TGG 0.360801 4_1:-66257897 Msa0565370:five_prime_UTR
AGGGAAGTTACGGATGAAAA+TGG 0.361071 4_1:-66258294 Msa0565370:five_prime_UTR
CTCAACATCACGGCATGTTT+CGG 0.365265 4_1:+66259556 None:intergenic
CCATTTATGTCCTTGTGCTT+TGG 0.367073 4_1:+66255697 None:intergenic
TTTGAATGCACCGTAGAAAC+TGG 0.379966 4_1:+66255250 None:intergenic
CTGGTATTGGAATAAACCTT+AGG 0.384790 4_1:-66258314 Msa0565370:five_prime_UTR
CTTGCAACTACACTCTCCTT+TGG 0.384978 4_1:-66259656 Msa0565370:five_prime_UTR
AGAGAGGAGATTAGGAAATC+GGG 0.386696 4_1:+66256194 None:intergenic
ATAGTCACAGATGTTCCATT+AGG 0.391197 4_1:+66257882 None:intergenic
GACCATGGGCTGAAGGTATT+GGG 0.393402 4_1:-66258270 Msa0565370:five_prime_UTR
TGAACTTCAATTGATTCAAC+AGG 0.393542 4_1:+66257731 None:intergenic
AGACCATGGGCTGAAGGTAT+TGG 0.393937 4_1:-66258271 Msa0565370:five_prime_UTR
TGCCTTTGACCTTGTCTGAA+TGG 0.396329 4_1:+66258940 None:intergenic
TACCAATGAAGGACTTGTTC+AGG 0.398498 4_1:-66259495 Msa0565370:five_prime_UTR
GAGGAAGTAGAGAGAGGGAT+TGG 0.399045 4_1:+66259578 None:intergenic
TATCCGAAACAACAGCTTGC+TGG 0.404299 4_1:+66256312 None:intergenic
TACAGTATGTCGTTGTTTAG+TGG 0.410190 4_1:-66256117 Msa0565370:five_prime_UTR
TTCCTGAACAAGTCCTTCAT+TGG 0.422208 4_1:+66259493 None:intergenic
TAGTAATACTTAACTAATAT+AGG 0.422634 4_1:-66255028 Msa0565370:three_prime_UTR
CTTGAAGCTCAAATACAGAT+TGG 0.425182 4_1:+66255761 None:intergenic
TCATGTATTCATATATCAAT+AGG 0.436212 4_1:+66254914 None:intergenic
GTTCCAGCAAGCTGTTGTTT+CGG 0.436242 4_1:-66256315 Msa0565370:five_prime_UTR
CTGGTGTGGTTATAACTGTT+GGG 0.440327 4_1:-66255732 Msa0565370:CDS
TAGTCACAGATGTTCCATTA+GGG 0.443517 4_1:+66257883 None:intergenic
GACGGTCCTGCTCATTCTGC+TGG 0.446334 4_1:-66258237 Msa0565370:five_prime_UTR
TGGTCGCAACCGTTGGTCTC+AGG 0.446965 4_1:-66259435 Msa0565370:five_prime_UTR
CCAATGCATTGAACTCTTTG+AGG 0.452389 4_1:+66257627 None:intergenic
TCTGGTGTGGTTATAACTGT+TGG 0.453331 4_1:-66255733 Msa0565370:CDS
CATGTCATACCTCGCCATCT+TGG 0.454892 4_1:+66258338 None:intergenic
TGTATAAGGATCGCCCAAAC+TGG 0.456151 4_1:+66258892 None:intergenic
GTAGAGAGAGGGATTGGAAG+AGG 0.456800 4_1:+66259584 None:intergenic
CCTTCATTGGTAACAACCTC+AGG 0.460247 4_1:+66259506 None:intergenic
TGAAGTTCAGCGGCAATTTG+TGG 0.460683 4_1:-66257717 Msa0565370:five_prime_UTR
TGAAGAGCAGATGCAGAAGA+AGG 0.463218 4_1:+66259614 None:intergenic
AACAACAGCTTGCTGGAACT+GGG 0.463806 4_1:+66256319 None:intergenic
AAAGTGGTGCTGCTCATATT+GGG 0.464184 4_1:-66257658 Msa0565370:five_prime_UTR
CACTTTCAGTTTGTTCCATA+CGG 0.469501 4_1:+66257675 None:intergenic
AGGTATGACATGACTGGTAT+TGG 0.470655 4_1:-66258327 Msa0565370:five_prime_UTR
CTCGTTGGAAAACGCACATA+TGG 0.472815 4_1:-66255880 Msa0565370:CDS
ACCTGGAAGTTTCTGGAAGT+CGG 0.473085 4_1:+66255660 None:intergenic
TTGGATCTTAGAGATAATCT+TGG 0.473432 4_1:-66257469 Msa0565370:five_prime_UTR
CCTGGAAGTTTCTGGAAGTC+GGG 0.481707 4_1:+66255661 None:intergenic
ACAACAGCTTGCTGGAACTG+GGG 0.481816 4_1:+66256320 None:intergenic
AATAAACCTTAGGGAAGTTA+CGG 0.481828 4_1:-66258304 Msa0565370:five_prime_UTR
TGGGGTGTTGAAAGTATTGT+TGG 0.482845 4_1:+66259746 None:intergenic
AGCAGATGCAGAAGAAGGGA+AGG 0.488126 4_1:+66259619 None:intergenic
AAGGACTTGTTCAGGAAGCT+TGG 0.491839 4_1:-66259487 Msa0565370:five_prime_UTR
CCTGAGGTTGTTACCAATGA+AGG 0.492506 4_1:-66259506 Msa0565370:five_prime_UTR
TTGATACTGGTCGCAACCGT+TGG 0.494736 4_1:-66259442 Msa0565370:five_prime_UTR
AAGATCCAATACAAAATATG+AGG 0.497184 4_1:+66257483 None:intergenic
TCTGTATTTGAGCTTCAAGA+TGG 0.497337 4_1:-66255757 Msa0565370:CDS
AAGTTGCTTCAGTTATGCTC+AGG 0.498921 4_1:+66255057 None:intergenic
TTGCAAGGAGGGTGTTGTGA+AGG 0.501563 4_1:+66259672 None:intergenic
TCATTCTGCTGGTGTCAGAC+AGG 0.502702 4_1:-66258226 Msa0565370:intron
TGATAGGTCATCTACACTGC+TGG 0.503687 4_1:-66256350 Msa0565370:intron
CTTCTAAAGAATCCGCATGC+TGG 0.503700 4_1:-66255190 Msa0565370:three_prime_UTR
ATGAGATGAATGAGAGGCTA+TGG 0.504700 4_1:-66259985 Msa0565370:five_prime_UTR
TTTGAGCTTCAAGATGGGTC+TGG 0.505669 4_1:-66255751 Msa0565370:CDS
TAATCTTGGTGGGCTAGTGC+AGG 0.505943 4_1:-66257455 Msa0565370:intron
TGCAAGGAGGGTGTTGTGAA+GGG 0.514883 4_1:+66259673 None:intergenic
ATAGACACATAACACAAGAT+TGG 0.515667 4_1:-66255128 Msa0565370:three_prime_UTR
GAGAGAGGGATTGGAAGAGG+AGG 0.520963 4_1:+66259587 None:intergenic
TGGTATTGGAATAAACCTTA+GGG 0.523685 4_1:-66258313 Msa0565370:five_prime_UTR
TGTTGAAAGTATTGTTGGAG+TGG 0.527937 4_1:+66259751 None:intergenic
GAAGAATGGATTACCTCCTC+AGG 0.528232 4_1:+66258857 None:intergenic
TTGTGAAGGGAAAGCTTAGT+GGG 0.528461 4_1:+66259686 None:intergenic
AGTGATCTAAGGAAGCATAC+AGG 0.529961 4_1:-66255097 Msa0565370:three_prime_UTR
GTTGTGAAGGGAAAGCTTAG+TGG 0.530687 4_1:+66259685 None:intergenic
TGTTCCATACGGTAAGAGAC+TGG 0.531186 4_1:+66257686 None:intergenic
GCTCGAAAAGATTTAGTCAT+CGG 0.531541 4_1:-66257605 Msa0565370:intron
ACCGTTGGTCTCAGGATACC+TGG 0.531650 4_1:-66259427 Msa0565370:five_prime_UTR
GGAGAGTGTAGTTGCAAGGA+GGG 0.531892 4_1:+66259661 None:intergenic
ACAAGAGGAGCACGGATCAA+TGG 0.532220 4_1:+66256284 None:intergenic
CGCAGTTCCAACTGCTCCTG+AGG 0.533079 4_1:-66259522 Msa0565370:five_prime_UTR
TGAGCATAACTGAAGCAACT+TGG 0.537032 4_1:-66255055 Msa0565370:three_prime_UTR
GATCTTAGAGATAATCTTGG+TGG 0.537887 4_1:-66257466 Msa0565370:five_prime_UTR
TTTCATCCGTAACTTCCCTA+AGG 0.542168 4_1:+66258298 None:intergenic
CAGATGCAGAAGAAGGGAAG+GGG 0.543799 4_1:+66259621 None:intergenic
CCTCAAAGAGTTCAATGCAT+TGG 0.545821 4_1:-66257627 Msa0565370:five_prime_UTR
GGAGTGGTGGAGAGTGATGA+AGG 0.547929 4_1:+66259767 None:intergenic
ATCTTAGAGATAATCTTGGT+GGG 0.549550 4_1:-66257465 Msa0565370:five_prime_UTR
AATTGTCGAGCTGTTCTCGT+TGG 0.550446 4_1:-66255895 Msa0565370:CDS
CGTATGGAACAAACTGAAAG+TGG 0.551046 4_1:-66257674 Msa0565370:five_prime_UTR
AGATGCAGAAGAAGGGAAGG+GGG 0.555276 4_1:+66259622 None:intergenic
CACACCAGTCTCTTACCGTA+TGG 0.556124 4_1:-66257690 Msa0565370:five_prime_UTR
CAAGGATAAACCAGTTTCTA+CGG 0.556253 4_1:-66255260 Msa0565370:exon
AGCTCAAGCATGGAAACTGT+GGG 0.565529 4_1:-66257754 Msa0565370:five_prime_UTR
CGTTGTTGTCAGCTCAAGCA+TGG 0.565807 4_1:-66257764 Msa0565370:intron
ATCCCAATACCTTCAGCCCA+TGG 0.569254 4_1:+66258268 None:intergenic
CAACATCATCAAGCGGATGC+TGG 0.572477 4_1:-66258915 Msa0565370:five_prime_UTR
CTGTATTTGAGCTTCAAGAT+GGG 0.577139 4_1:-66255756 Msa0565370:CDS
GCAGATGCAGAAGAAGGGAA+GGG 0.577572 4_1:+66259620 None:intergenic
GTAACAACCTCAGGAGCAGT+TGG 0.578338 4_1:+66259515 None:intergenic
CAGCTCAAGCATGGAAACTG+TGG 0.578820 4_1:-66257755 Msa0565370:five_prime_UTR
ACACATAACACAAGATTGGT+AGG 0.581055 4_1:-66255124 Msa0565370:three_prime_UTR
GAACATTGATGATACCTGCC+AGG 0.586445 4_1:+66259409 None:intergenic
GAAGTATCATCCCTGTTGCA+AGG 0.589347 4_1:-66257906 Msa0565370:five_prime_UTR
ATACTTAACTAATATAGGAA+AGG 0.590073 4_1:-66255023 Msa0565370:three_prime_UTR
TGAAAGTATTGTTGGAGTGG+TGG 0.590643 4_1:+66259754 None:intergenic
TTCCATTCAGACAAGGTCAA+AGG 0.593150 4_1:-66258942 Msa0565370:five_prime_UTR
ACGGATGAAAATGGAGACCA+TGG 0.594796 4_1:-66258285 Msa0565370:five_prime_UTR
GAAGAGCAGATGCAGAAGAA+GGG 0.595058 4_1:+66259615 None:intergenic
TTGGTCTCAGGATACCTGGC+AGG 0.596168 4_1:-66259423 Msa0565370:intron
CAAAGGAGAGTGTAGTTGCA+AGG 0.596188 4_1:+66259657 None:intergenic
CAACAGCTTGCTGGAACTGG+GGG 0.597395 4_1:+66256321 None:intergenic
CTGACACCAGCAGAATGAGC+AGG 0.598327 4_1:+66258231 None:intergenic
AAATGGAGACCATGGGCTGA+AGG 0.601753 4_1:-66258277 Msa0565370:five_prime_UTR
GTATTGGGATTAATATTGGA+CGG 0.602411 4_1:-66258255 Msa0565370:five_prime_UTR
ATGGCGAGGTATGACATGAC+TGG 0.602836 4_1:-66258333 Msa0565370:five_prime_UTR
TAACTAGATTAAATTAAACT+CGG 0.604609 4_1:-66259911 Msa0565370:five_prime_UTR
TCCATTAGGGCCTTGCAACA+GGG 0.610956 4_1:+66257896 None:intergenic
TTTCGGAGGAAGTAGAGAGA+GGG 0.615323 4_1:+66259573 None:intergenic
TTGAATCAATTGAAGTTCAG+CGG 0.615959 4_1:-66257727 Msa0565370:five_prime_UTR
AACATCACGGCATGTTTCGG+AGG 0.617397 4_1:+66259559 None:intergenic
ATGCATTGAACTCTTTGAGG+CGG 0.622366 4_1:+66257630 None:intergenic
CACAAGGACATAAATGGCAA+CGG 0.622455 4_1:-66255691 Msa0565370:CDS
AAAAGTTCTCCAAGATGGCG+AGG 0.627849 4_1:-66258347 Msa0565370:intron
GTTTCGGAGGAAGTAGAGAG+AGG 0.629848 4_1:+66259572 None:intergenic
TTTCCTAAACGAAGGAGACA+CGG 0.632678 4_1:-66256937 Msa0565370:intron
ACATGGCAGCTTCCAGCATG+CGG 0.635420 4_1:+66255178 None:intergenic
GCTTCAAGATGGGTCTGGTG+TGG 0.637950 4_1:-66255746 Msa0565370:CDS
TGGAAAACGCACATATGGCA+AGG 0.638471 4_1:-66255875 Msa0565370:intron
TGAGCAATTCCATTCAGACA+AGG 0.642285 4_1:-66258949 Msa0565370:five_prime_UTR
AATGAAGCGACTTCAAGACA+TGG 0.646610 4_1:-66257509 Msa0565370:five_prime_UTR
GTATGTAACACCAAAGCACA+AGG 0.647978 4_1:-66255707 Msa0565370:CDS
AGGAGAGTGTAGTTGCAAGG+AGG 0.651687 4_1:+66259660 None:intergenic
AAATGCAGTATGCTTCAGCA+AGG 0.653675 4_1:-66255278 Msa0565370:CDS
GCAGTAATGAGATGAATGAG+AGG 0.659301 4_1:-66259991 Msa0565370:five_prime_UTR
GCCAGGTATCCTGAGACCAA+CGG 0.663215 4_1:+66259426 None:intergenic
AGGCACACAACATCATCAAG+CGG 0.671393 4_1:-66258922 Msa0565370:five_prime_UTR
ATGAAGCGACTTCAAGACAT+GGG 0.671799 4_1:-66257508 Msa0565370:five_prime_UTR
CGGATGAAAATGGAGACCAT+GGG 0.672135 4_1:-66258284 Msa0565370:five_prime_UTR
TATCTCGTAGCTCAACATCA+CGG 0.689434 4_1:+66259546 None:intergenic
GCAGAAAGAAGATGAATGTG+TGG 0.715352 4_1:-66259796 Msa0565370:five_prime_UTR
TATGGCAGTTAATAACACAG+AGG 0.766028 4_1:-66257949 Msa0565370:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATGAATTTTTATTATGT+GGG - chr4_1:66255582-66255601 Msa0565370:intron 10.0%
!! TAACTAGATTAAATTAAACT+CGG - chr4_1:66255011-66255030 Msa0565370:three_prime_UTR 15.0%
!! CATAATAAAAATTCATAAAC+TGG + chr4_1:66255581-66255600 None:intergenic 15.0%
!!! GTTTATGAATTTTTATTATG+TGG - chr4_1:66255581-66255600 Msa0565370:intron 15.0%
!!! TTTCTTATTTAGTTTAATTG+AGG + chr4_1:66256406-66256425 None:intergenic 15.0%
!! CTGAAAACAAAAAATTATTA+GGG + chr4_1:66256780-66256799 None:intergenic 15.0%
!! ACTGAAAACAAAAAATTATT+AGG + chr4_1:66256781-66256800 None:intergenic 15.0%
!! ATACAATTATATTAACATCA+GGG + chr4_1:66256808-66256827 None:intergenic 15.0%
!! AATACAATTATATTAACATC+AGG + chr4_1:66256809-66256828 None:intergenic 15.0%
!!! ACTATATGTTTTAACATTTT+CGG - chr4_1:66256841-66256860 Msa0565370:intron 15.0%
!!! AAATTTTTGAGATATATACA+TGG + chr4_1:66259764-66259783 None:intergenic 15.0%
!! TAGTAATACTTAACTAATAT+AGG - chr4_1:66259894-66259913 Msa0565370:five_prime_UTR 15.0%
!!! TTTTAAAAAATAAAAGAGGA+AGG + chr4_1:66259966-66259985 None:intergenic 15.0%
!!! AAAATGCAAAATTTTGATGT+GGG + chr4_1:66255540-66255559 None:intergenic 20.0%
!!! AAAAATGCAAAATTTTGATG+TGG + chr4_1:66255541-66255560 None:intergenic 20.0%
!!! AATTTTTATTATGTGGGTTT+TGG - chr4_1:66255588-66255607 Msa0565370:intron 20.0%
!! CACTTTATAATTCATATTGA+AGG - chr4_1:66255709-66255728 Msa0565370:CDS 20.0%
!!! TTTTATTTGTTTCTTGGTTA+GGG - chr4_1:66256942-66256961 Msa0565370:five_prime_UTR 20.0%
!! AAAAGAAAAGGAAAAAGAAA+AGG + chr4_1:66257686-66257705 None:intergenic 20.0%
!! TTCGTTATATGAAAAAGAAA+AGG + chr4_1:66257710-66257729 None:intergenic 20.0%
!! TACATTGTGTAAAACATTAT+TGG - chr4_1:66258056-66258075 Msa0565370:intron 20.0%
!!! TTTTCCTTAAAATATGATGT+TGG - chr4_1:66258130-66258149 Msa0565370:intron 20.0%
!! ATTGAAGACAATAAAATTCA+AGG + chr4_1:66258177-66258196 None:intergenic 20.0%
!! TGATATAATCGATTAAATGT+TGG - chr4_1:66258421-66258440 Msa0565370:intron 20.0%
!!! GTTGATTTCTTTTTTACTAT+AGG - chr4_1:66258443-66258462 Msa0565370:intron 20.0%
!! TGTAAAAAAAATTCAGATGT+AGG + chr4_1:66258677-66258696 None:intergenic 20.0%
!! AATAAGTATAACATGAACAA+TGG + chr4_1:66258982-66259001 None:intergenic 20.0%
!!! TAATTTTTCTCTTCGTAAAA+TGG - chr4_1:66259074-66259093 Msa0565370:intron 20.0%
!!! TGATTGATTATTTTCTTTCA+GGG - chr4_1:66259132-66259151 Msa0565370:intron 20.0%
!! ATAAAAAACACAATTATACC+TGG + chr4_1:66259282-66259301 None:intergenic 20.0%
!! GTATATATCTCAAAAATTTC+AGG - chr4_1:66259765-66259784 Msa0565370:five_prime_UTR 20.0%
!! ATACTTAACTAATATAGGAA+AGG - chr4_1:66259899-66259918 Msa0565370:five_prime_UTR 20.0%
!! CTACATAAAAATGTAAAACA+AGG + chr4_1:66259928-66259947 None:intergenic 20.0%
!! TCATGTATTCATATATCAAT+AGG + chr4_1:66260011-66260030 Msa0565380:five_prime_UTR 20.0%
! TAGTTATCAACAAAAAATGC+TGG + chr4_1:66254997-66255016 None:intergenic 25.0%
!!! CTTTAAGTTGGTAAAGTAAT+GGG + chr4_1:66255633-66255652 None:intergenic 25.0%
!!! ACTTTAAGTTGGTAAAGTAA+TGG + chr4_1:66255634-66255653 None:intergenic 25.0%
! CACTAATGAAAATTGAAGAA+TGG + chr4_1:66256082-66256101 None:intergenic 25.0%
!! TTTAATTGAGGTAAGAGTAT+AGG + chr4_1:66256394-66256413 None:intergenic 25.0%
!!! TGTTTTAACATTTTCGGTAT+AGG - chr4_1:66256847-66256866 Msa0565370:intron 25.0%
!!! TCTTGCTTTTATTTGTTTCT+TGG - chr4_1:66256936-66256955 Msa0565370:intron 25.0%
!!! CTTTTATTTGTTTCTTGGTT+AGG - chr4_1:66256941-66256960 Msa0565370:five_prime_UTR 25.0%
!! TTTATTTGTTTCTTGGTTAG+GGG - chr4_1:66256943-66256962 Msa0565370:five_prime_UTR 25.0%
! CGTTAAAAAACTAAAAGCAA+AGG + chr4_1:66257118-66257137 None:intergenic 25.0%
!! TTAACGTTCATGTTTAAGAT+TGG - chr4_1:66257132-66257151 Msa0565370:intron 25.0%
!!! TCTTTGTTTTTGCTTTCTTA+CGG - chr4_1:66257361-66257380 Msa0565370:intron 25.0%
! AAGATCCAATACAAAATATG+AGG + chr4_1:66257442-66257461 None:intergenic 25.0%
! AAAATGAAGATAAACGCATA+AGG - chr4_1:66257584-66257603 Msa0565370:intron 25.0%
! GAAAAGGAAAAAGAAAAGAT+GGG + chr4_1:66257682-66257701 None:intergenic 25.0%
! AGAAAAGGAAAAAGAAAAGA+TGG + chr4_1:66257683-66257702 None:intergenic 25.0%
!! AATTGAAGAAATACTGACTA+TGG + chr4_1:66257787-66257806 None:intergenic 25.0%
! CATTTCTCCACTAATAATAT+TGG - chr4_1:66258211-66258230 Msa0565370:intron 25.0%
! CAATTATGTTAGACATTTAC+CGG - chr4_1:66258255-66258274 Msa0565370:five_prime_UTR 25.0%
! TCATATGTTAAGTAAACAAC+CGG + chr4_1:66258277-66258296 None:intergenic 25.0%
! TATTTAGTAGATAACCAGTT+AGG - chr4_1:66258394-66258413 Msa0565370:intron 25.0%
! CATTCAAATAAGAAAAAGAG+AGG + chr4_1:66258747-66258766 None:intergenic 25.0%
! GTTCATGTTATACTTATTTC+AGG - chr4_1:66258984-66259003 Msa0565370:intron 25.0%
! AATAATCAATCAGTACAGAT+TGG + chr4_1:66259124-66259143 None:intergenic 25.0%
!! CTGATTGATTATTTTCTTTC+AGG - chr4_1:66259131-66259150 Msa0565370:intron 25.0%
! ACCAGCAATAATTTGAAAAA+AGG - chr4_1:66259412-66259431 Msa0565370:intron 25.0%
!!! TCCTTTTTTCAAATTATTGC+TGG + chr4_1:66259416-66259435 None:intergenic 25.0%
! TTCACAGTCAAATTGTAATA+TGG - chr4_1:66259559-66259578 Msa0565370:five_prime_UTR 25.0%
!! TCAAATGCAATCTTTTCTTT+TGG - chr4_1:66259690-66259709 Msa0565370:five_prime_UTR 25.0%
! ATGATGATGATGATGATGAT+GGG + chr4_1:66255198-66255217 None:intergenic 30.0%
AATGATGACTTTCTTGATAC+TGG - chr4_1:66255467-66255486 Msa0565370:intron 30.0%
TAAAGCAGCAAACTTTAAGT+TGG + chr4_1:66255645-66255664 None:intergenic 30.0%
ATGTGATTATGTCTATGTGT+CGG - chr4_1:66255807-66255826 Msa0565370:intron 30.0%
!!! TCATTGATGTTGTTTTTGTG+TGG - chr4_1:66255894-66255913 Msa0565370:CDS 30.0%
CATTAGATGTTTATGCCTTA+CGG - chr4_1:66256129-66256148 Msa0565370:five_prime_UTR 30.0%
ATTAGATGTTTATGCCTTAC+GGG - chr4_1:66256130-66256149 Msa0565370:five_prime_UTR 30.0%
! TTTTGCCTCAGTTTATATGA+TGG + chr4_1:66256193-66256212 None:intergenic 30.0%
AATAAATCTCATCTGCATTG+CGG - chr4_1:66256215-66256234 Msa0565370:five_prime_UTR 30.0%
GCAAAACAAGCAATAGTAAA+TGG + chr4_1:66256456-66256475 None:intergenic 30.0%
AAAAAAGTCCATATGCCATT+AGG + chr4_1:66256548-66256567 None:intergenic 30.0%
!! CTTTTAAAAGTTCTCCAAGA+TGG - chr4_1:66256570-66256589 Msa0565370:intron 30.0%
! TGGTATTGGAATAAACCTTA+GGG - chr4_1:66256609-66256628 Msa0565370:intron 30.0%
AATAAACCTTAGGGAAGTTA+CGG - chr4_1:66256618-66256637 Msa0565370:intron 30.0%
!! GAAGGTATTGGGATTAATAT+TGG - chr4_1:66256663-66256682 Msa0565370:intron 30.0%
GTATTGGGATTAATATTGGA+CGG - chr4_1:66256667-66256686 Msa0565370:intron 30.0%
!! GAAGATTTTTGAAAATGAGC+AGG + chr4_1:66256907-66256926 None:intergenic 30.0%
! TTATTTGTTTCTTGGTTAGG+GGG - chr4_1:66256944-66256963 Msa0565370:five_prime_UTR 30.0%
GTTAATAACACAGAGGTAAA+TGG - chr4_1:66256980-66256999 Msa0565370:intron 30.0%
ATTCTGATTCCAAGTTAGTT+TGG - chr4_1:66257080-66257099 Msa0565370:intron 30.0%
! TGAACTTCAATTGATTCAAC+AGG + chr4_1:66257194-66257213 None:intergenic 30.0%
TTGAATCAATTGAAGTTCAG+CGG - chr4_1:66257195-66257214 Msa0565370:intron 30.0%
TTGGATCTTAGAGATAATCT+TGG - chr4_1:66257453-66257472 Msa0565370:intron 30.0%
ATCTTAGAGATAATCTTGGT+GGG - chr4_1:66257457-66257476 Msa0565370:five_prime_UTR 30.0%
TTCAAAGCAGAAAGTAAGAA+TGG + chr4_1:66257522-66257541 None:intergenic 30.0%
TGGGAAAACAAAAACAATCT+TGG + chr4_1:66257663-66257682 None:intergenic 30.0%
ACAAATGCTCAAAATGAATG+TGG - chr4_1:66257742-66257761 Msa0565370:five_prime_UTR 30.0%
!!! TTTGCCCTTTTAATTTTTGC+AGG - chr4_1:66257940-66257959 Msa0565370:five_prime_UTR 30.0%
AAGCTTTGCAATTTCAATTC+CGG + chr4_1:66257966-66257985 None:intergenic 30.0%
! GTTTTACACAATGTATGCTT+TGG + chr4_1:66258051-66258070 None:intergenic 30.0%
TGTGTAAAACATTATTGGAG+AGG - chr4_1:66258061-66258080 Msa0565370:intron 30.0%
TATTGGAGAGGTTAAAAAAG+AGG - chr4_1:66258073-66258092 Msa0565370:intron 30.0%
TCCTTAAAATATGATGTTGG+AGG - chr4_1:66258133-66258152 Msa0565370:intron 30.0%
! ACCTCCAACATCATATTTTA+AGG + chr4_1:66258137-66258156 None:intergenic 30.0%
CATGAGACCAATATTATTAG+TGG + chr4_1:66258221-66258240 None:intergenic 30.0%
GATTATATCATCATCCTAAC+TGG + chr4_1:66258411-66258430 None:intergenic 30.0%
GTTAAAATTGACTGCTATCT+TGG - chr4_1:66258476-66258495 Msa0565370:intron 30.0%
!!! TCTTCAACTGTTGTTTTCAA+TGG - chr4_1:66258506-66258525 Msa0565370:intron 30.0%
GTTTCTAATGTCATCATGAT+AGG - chr4_1:66258556-66258575 Msa0565370:intron 30.0%
! GGAAAAACTTTTACAACAAG+AGG + chr4_1:66258656-66258675 None:intergenic 30.0%
TAAGAAAAAGAGAGGAGATT+AGG + chr4_1:66258739-66258758 None:intergenic 30.0%
GAAAATGAGAAAGAGAGAAA+AGG + chr4_1:66259520-66259539 None:intergenic 30.0%
!! TACTGCATTTTGAAAGATGT+TGG + chr4_1:66259634-66259653 None:intergenic 30.0%
ATAGACACATAACACAAGAT+TGG - chr4_1:66259794-66259813 Msa0565370:five_prime_UTR 30.0%
! AACAAAAAATGCTGGTTACG+TGG + chr4_1:66254989-66255008 None:intergenic 35.0%
!! TGTTGAAAGTATTGTTGGAG+TGG + chr4_1:66255174-66255193 None:intergenic 35.0%
! TGATGATGATGATGATGATG+GGG + chr4_1:66255197-66255216 None:intergenic 35.0%
! GATGATGATGATGATGATGA+TGG + chr4_1:66255199-66255218 None:intergenic 35.0%
GAAAGCTTAGTGGGAATAAT+TGG + chr4_1:66255230-66255249 None:intergenic 35.0%
TATTGCTAGCTAAGTAGCTT+AGG - chr4_1:66255670-66255689 Msa0565370:CDS 35.0%
!!! TTGATGTTGTTTTTGTGTGG+TGG - chr4_1:66255897-66255916 Msa0565370:CDS 35.0%
GGTGAAAGAAAACGTGTATA+AGG + chr4_1:66256047-66256066 None:intergenic 35.0%
!! TTTTCATTAGTGTTGCTCTG+TGG - chr4_1:66256090-66256109 Msa0565370:five_prime_UTR 35.0%
TGGTGTTCTTTGCAATATCA+GGG + chr4_1:66256173-66256192 None:intergenic 35.0%
ATGGTGTTCTTTGCAATATC+AGG + chr4_1:66256174-66256193 None:intergenic 35.0%
GAACACCATCATATAAACTG+AGG - chr4_1:66256185-66256204 Msa0565370:five_prime_UTR 35.0%
! GTGTTGTCTGAGTTTGAAAT+TGG - chr4_1:66256364-66256383 Msa0565370:intron 35.0%
TTCTCGTGTTTCTTACCTAA+TGG - chr4_1:66256530-66256549 Msa0565370:intron 35.0%
GTTTCTTACCTAATGGCATA+TGG - chr4_1:66256537-66256556 Msa0565370:intron 35.0%
! CTGGTATTGGAATAAACCTT+AGG - chr4_1:66256608-66256627 Msa0565370:intron 35.0%
TATGGCAGTTAATAACACAG+AGG - chr4_1:66256973-66256992 Msa0565370:intron 35.0%
TAGTCACAGATGTTCCATTA+GGG + chr4_1:66257042-66257061 None:intergenic 35.0%
ATAGTCACAGATGTTCCATT+AGG + chr4_1:66257043-66257062 None:intergenic 35.0%
!! ATCTGTGACTATTCAGGTTT+TGG - chr4_1:66257051-66257070 Msa0565370:intron 35.0%
! CACTTTCAGTTTGTTCCATA+CGG + chr4_1:66257250-66257269 None:intergenic 35.0%
GCTCGAAAAGATTTAGTCAT+CGG - chr4_1:66257317-66257336 Msa0565370:intron 35.0%
GATCTTAGAGATAATCTTGG+TGG - chr4_1:66257456-66257475 Msa0565370:five_prime_UTR 35.0%
AAGAATGGTATAGGTAGACA+GGG + chr4_1:66257507-66257526 None:intergenic 35.0%
TAAGAATGGTATAGGTAGAC+AGG + chr4_1:66257508-66257527 None:intergenic 35.0%
GCAGAAAGTAAGAATGGTAT+AGG + chr4_1:66257516-66257535 None:intergenic 35.0%
AGGGCAAACAAAACTGAATT+AGG + chr4_1:66257928-66257947 None:intergenic 35.0%
TCTTCACTCTGTACAGAAAA+GGG + chr4_1:66258307-66258326 None:intergenic 35.0%
ATCTTCACTCTGTACAGAAA+AGG + chr4_1:66258308-66258327 None:intergenic 35.0%
GTGTGAGCTAATCGATAAAA+TGG - chr4_1:66258357-66258376 Msa0565370:intron 35.0%
!!! CTGTTGTTTTCAATGGATTG+TGG - chr4_1:66258513-66258532 Msa0565370:intron 35.0%
AAGAGAGGAGATTAGGAAAT+CGG + chr4_1:66258732-66258751 None:intergenic 35.0%
TACAGTATGTCGTTGTTTAG+TGG - chr4_1:66258805-66258824 Msa0565370:intron 35.0%
! CTTTTTGATCTGTATCATGC+AGG - chr4_1:66258859-66258878 Msa0565370:intron 35.0%
CTTGAAGCTCAAATACAGAT+TGG + chr4_1:66259164-66259183 None:intergenic 35.0%
TCTGTATTTGAGCTTCAAGA+TGG - chr4_1:66259165-66259184 Msa0565370:intron 35.0%
CTGTATTTGAGCTTCAAGAT+GGG - chr4_1:66259166-66259185 Msa0565370:intron 35.0%
CAATTATACCTGGAAGTTTC+TGG + chr4_1:66259272-66259291 None:intergenic 35.0%
ATGTAATCGAGTGTCAATGT+CGG - chr4_1:66259445-66259464 Msa0565370:five_prime_UTR 35.0%
CAAGGATAAACCAGTTTCTA+CGG - chr4_1:66259662-66259681 Msa0565370:five_prime_UTR 35.0%
ACACATAACACAAGATTGGT+AGG - chr4_1:66259798-66259817 Msa0565370:five_prime_UTR 35.0%
CATACAGGAGTTCGTATTTA+AGG - chr4_1:66259840-66259859 Msa0565370:five_prime_UTR 35.0%
!! ACATGACACTGTCACTTTAT+TGG - chr4_1:66260025-66260044 Msa0565370:five_prime_UTR 35.0%
GCAGTAATGAGATGAATGAG+AGG - chr4_1:66254931-66254950 Msa0565370:three_prime_UTR 40.0%
ATGAGATGAATGAGAGGCTA+TGG - chr4_1:66254937-66254956 Msa0565370:three_prime_UTR 40.0%
GCAGAAAGAAGATGAATGTG+TGG - chr4_1:66255126-66255145 Msa0565370:three_prime_UTR 40.0%
!! TGAAAGTATTGTTGGAGTGG+TGG + chr4_1:66255171-66255190 None:intergenic 40.0%
!! TGGGGTGTTGAAAGTATTGT+TGG + chr4_1:66255179-66255198 None:intergenic 40.0%
TTGTGAAGGGAAAGCTTAGT+GGG + chr4_1:66255239-66255258 None:intergenic 40.0%
TATCTCGTAGCTCAACATCA+CGG + chr4_1:66255379-66255398 None:intergenic 40.0%
! TACCAATGAAGGACTTGTTC+AGG - chr4_1:66255427-66255446 Msa0565370:intron 40.0%
TTCCTGAACAAGTCCTTCAT+TGG + chr4_1:66255432-66255451 None:intergenic 40.0%
!! TTTGGTTTGTAGCTTGGAGT+TGG - chr4_1:66255606-66255625 Msa0565370:intron 40.0%
CGAGTAAATGTCAGAGACTT+AGG + chr4_1:66255739-66255758 None:intergenic 40.0%
! TTATGTCTATGTGTCGGTGT+TGG - chr4_1:66255813-66255832 Msa0565370:intron 40.0%
! GTTTTTGTGTGGTGGTTAGT+TGG - chr4_1:66255905-66255924 Msa0565370:CDS 40.0%
TGAGCAATTCCATTCAGACA+AGG - chr4_1:66255973-66255992 Msa0565370:intron 40.0%
TTCCATTCAGACAAGGTCAA+AGG - chr4_1:66255980-66255999 Msa0565370:intron 40.0%
! TACACGTTTTCTTTCACCTG+AGG - chr4_1:66256049-66256068 Msa0565370:CDS 40.0%
TGTTCTTTGCAATATCAGGG+GGG + chr4_1:66256170-66256189 None:intergenic 40.0%
GTGTTCTTTGCAATATCAGG+GGG + chr4_1:66256171-66256190 None:intergenic 40.0%
GGTGTTCTTTGCAATATCAG+GGG + chr4_1:66256172-66256191 None:intergenic 40.0%
TGTTCAGCAGTTTCCATTGT+AGG + chr4_1:66256272-66256291 None:intergenic 40.0%
CACTACAACATGGCGTAAAT+GGG - chr4_1:66256321-66256340 Msa0565370:five_prime_UTR 40.0%
! AAGAAACACGAGAAGCACAA+TGG + chr4_1:66256524-66256543 None:intergenic 40.0%
AGGTATGACATGACTGGTAT+TGG - chr4_1:66256595-66256614 Msa0565370:intron 40.0%
TTTCATCCGTAACTTCCCTA+AGG + chr4_1:66256627-66256646 None:intergenic 40.0%
AGGGAAGTTACGGATGAAAA+TGG - chr4_1:66256628-66256647 Msa0565370:intron 40.0%
GACAACTCTACCAATTCACT+CGG - chr4_1:66256727-66256746 Msa0565370:intron 40.0%
AAGACATTAGCCGAGTGAAT+TGG + chr4_1:66256740-66256759 None:intergenic 40.0%
TTGGTTAGGGGGATGAAATA+TGG - chr4_1:66256955-66256974 Msa0565370:five_prime_UTR 40.0%
TGGAACATCTGTGACTATTC+AGG - chr4_1:66257045-66257064 Msa0565370:intron 40.0%
CGTATGGAACAAACTGAAAG+TGG - chr4_1:66257248-66257267 Msa0565370:intron 40.0%
!! AAAGTGGTGCTGCTCATATT+GGG - chr4_1:66257264-66257283 Msa0565370:intron 40.0%
! ATGCATTGAACTCTTTGAGG+CGG + chr4_1:66257295-66257314 None:intergenic 40.0%
CCAATGCATTGAACTCTTTG+AGG + chr4_1:66257298-66257317 None:intergenic 40.0%
CCTCAAAGAGTTCAATGCAT+TGG - chr4_1:66257295-66257314 Msa0565370:intron 40.0%
AATGAAGCGACTTCAAGACA+TGG - chr4_1:66257413-66257432 Msa0565370:intron 40.0%
ATGAAGCGACTTCAAGACAT+GGG - chr4_1:66257414-66257433 Msa0565370:intron 40.0%
! GGGTGCCTCATATTTTGTAT+TGG - chr4_1:66257434-66257453 Msa0565370:intron 40.0%
AGTTGTGCTCAAACATGCTT+TGG - chr4_1:66257837-66257856 Msa0565370:intron 40.0%
CCGGCCTGCAAAAATTAAAA+GGG + chr4_1:66257947-66257966 None:intergenic 40.0%
!!! CCCTTTTAATTTTTGCAGGC+CGG - chr4_1:66257944-66257963 Msa0565370:five_prime_UTR 40.0%
TCCGGCCTGCAAAAATTAAA+AGG + chr4_1:66257948-66257967 None:intergenic 40.0%
! GCAAAGCTTTTCCTAAACGA+AGG - chr4_1:66257977-66257996 Msa0565370:intron 40.0%
TTTCCTAAACGAAGGAGACA+CGG - chr4_1:66257985-66258004 Msa0565370:intron 40.0%
TTCACTCTGTACAGAAAAGG+GGG + chr4_1:66258305-66258324 None:intergenic 40.0%
CTTCACTCTGTACAGAAAAG+GGG + chr4_1:66258306-66258325 None:intergenic 40.0%
! CTTTTACAACAAGAGGAGCA+CGG + chr4_1:66258649-66258668 None:intergenic 40.0%
AGAGAGGAGATTAGGAAATC+GGG + chr4_1:66258731-66258750 None:intergenic 40.0%
CTAGTGCTAGTGAAATAGTG+AGG - chr4_1:66258903-66258922 Msa0565370:five_prime_UTR 40.0%
TCTGGTGTGGTTATAACTGT+TGG - chr4_1:66259189-66259208 Msa0565370:intron 40.0%
CTGGTGTGGTTATAACTGTT+GGG - chr4_1:66259190-66259209 Msa0565370:intron 40.0%
GTATGTAACACCAAAGCACA+AGG - chr4_1:66259215-66259234 Msa0565370:intron 40.0%
CCATTTATGTCCTTGTGCTT+TGG + chr4_1:66259228-66259247 None:intergenic 40.0%
CCAAAGCACAAGGACATAAA+TGG - chr4_1:66259225-66259244 Msa0565370:intron 40.0%
CACAAGGACATAAATGGCAA+CGG - chr4_1:66259231-66259250 Msa0565370:intron 40.0%
CTTTCTTTCTCTCCTTGTCT+CGG - chr4_1:66259307-66259326 Msa0565370:intron 40.0%
TTTCTTTCTCTCCTTGTCTC+GGG - chr4_1:66259308-66259327 Msa0565370:intron 40.0%
AAATGCAGTATGCTTCAGCA+AGG - chr4_1:66259644-66259663 Msa0565370:five_prime_UTR 40.0%
TTTGAATGCACCGTAGAAAC+TGG + chr4_1:66259675-66259694 None:intergenic 40.0%
TGGTAGGAAGAAGTGATCTA+AGG - chr4_1:66259814-66259833 Msa0565370:five_prime_UTR 40.0%
! AGTGATCTAAGGAAGCATAC+AGG - chr4_1:66259825-66259844 Msa0565370:five_prime_UTR 40.0%
AAGTTGCTTCAGTTATGCTC+AGG + chr4_1:66259868-66259887 None:intergenic 40.0%
TGAGCATAACTGAAGCAACT+TGG - chr4_1:66259867-66259886 Msa0565370:five_prime_UTR 40.0%
GTTGTGAAGGGAAAGCTTAG+TGG + chr4_1:66255240-66255259 None:intergenic 45.0%
! CAAAGGAGAGTGTAGTTGCA+AGG + chr4_1:66255268-66255287 None:intergenic 45.0%
CTTGCAACTACACTCTCCTT+TGG - chr4_1:66255266-66255285 Msa0565370:exon 45.0%
GAAGAGCAGATGCAGAAGAA+GGG + chr4_1:66255310-66255329 None:intergenic 45.0%
TGAAGAGCAGATGCAGAAGA+AGG + chr4_1:66255311-66255330 None:intergenic 45.0%
TTTCGGAGGAAGTAGAGAGA+GGG + chr4_1:66255352-66255371 None:intergenic 45.0%
CTCAACATCACGGCATGTTT+CGG + chr4_1:66255369-66255388 None:intergenic 45.0%
! CCTTCATTGGTAACAACCTC+AGG + chr4_1:66255419-66255438 None:intergenic 45.0%
CCTGAGGTTGTTACCAATGA+AGG - chr4_1:66255416-66255435 Msa0565370:intron 45.0%
! AAGGACTTGTTCAGGAAGCT+TGG - chr4_1:66255435-66255454 Msa0565370:intron 45.0%
! GAACATTGATGATACCTGCC+AGG + chr4_1:66255516-66255535 None:intergenic 45.0%
!!! GTGGGTTTTGGTTTGTAGCT+TGG - chr4_1:66255600-66255619 Msa0565370:intron 45.0%
TCTGGTGTTTGTGTCTGTGT+CGG - chr4_1:66255843-66255862 Msa0565370:intron 45.0%
!! TGGTGGTTAGTTGGTGCTAA+TGG - chr4_1:66255914-66255933 Msa0565370:CDS 45.0%
TGCCTTTGACCTTGTCTGAA+TGG + chr4_1:66255985-66256004 None:intergenic 45.0%
AGGCACACAACATCATCAAG+CGG - chr4_1:66256000-66256019 Msa0565370:intron 45.0%
TGTATAAGGATCGCCCAAAC+TGG + chr4_1:66256033-66256052 None:intergenic 45.0%
! ACGTTTTCTTTCACCTGAGG+AGG - chr4_1:66256052-66256071 Msa0565370:exon 45.0%
!! GAAGAATGGATTACCTCCTC+AGG + chr4_1:66256068-66256087 None:intergenic 45.0%
! TCATTAGTGTTGCTCTGTGG+AGG - chr4_1:66256093-66256112 Msa0565370:five_prime_UTR 45.0%
CCATTTACGCCATGTTGTAG+TGG + chr4_1:66256323-66256342 None:intergenic 45.0%
CCACTACAACATGGCGTAAA+TGG - chr4_1:66256320-66256339 Msa0565370:five_prime_UTR 45.0%
AAAAGTTCTCCAAGATGGCG+AGG - chr4_1:66256575-66256594 Msa0565370:intron 45.0%
ACGGATGAAAATGGAGACCA+TGG - chr4_1:66256637-66256656 Msa0565370:intron 45.0%
CGGATGAAAATGGAGACCAT+GGG - chr4_1:66256638-66256657 Msa0565370:intron 45.0%
! GAAGTATCATCCCTGTTGCA+AGG - chr4_1:66257016-66257035 Msa0565370:intron 45.0%
CTAAAAGCAAAGGCTAGAGC+AGG + chr4_1:66257108-66257127 None:intergenic 45.0%
AGCTCAAGCATGGAAACTGT+GGG - chr4_1:66257168-66257187 Msa0565370:intron 45.0%
TGAAGTTCAGCGGCAATTTG+TGG - chr4_1:66257205-66257224 Msa0565370:intron 45.0%
TGTTCCATACGGTAAGAGAC+TGG + chr4_1:66257239-66257258 None:intergenic 45.0%
!! GAAAGTGGTGCTGCTCATAT+TGG - chr4_1:66257263-66257282 Msa0565370:intron 45.0%
ACGTGTGTTCGTGCAGATTA+TGG - chr4_1:66257624-66257643 Msa0565370:five_prime_UTR 45.0%
TTACCGTGTCTCCTTCGTTT+AGG + chr4_1:66257991-66258010 None:intergenic 45.0%
TGATAGGTCATCTACACTGC+TGG - chr4_1:66258572-66258591 Msa0565370:intron 45.0%
!! AACAACAGCTTGCTGGAACT+GGG + chr4_1:66258606-66258625 None:intergenic 45.0%
!! AAACAACAGCTTGCTGGAAC+TGG + chr4_1:66258607-66258626 None:intergenic 45.0%
! GTTCCAGCAAGCTGTTGTTT+CGG - chr4_1:66258607-66258626 Msa0565370:intron 45.0%
TATCCGAAACAACAGCTTGC+TGG + chr4_1:66258613-66258632 None:intergenic 45.0%
AATTGTCGAGCTGTTCTCGT+TGG - chr4_1:66259027-66259046 Msa0565370:intron 45.0%
CTCGTTGGAAAACGCACATA+TGG - chr4_1:66259042-66259061 Msa0565370:intron 45.0%
TGGAAAACGCACATATGGCA+AGG - chr4_1:66259047-66259066 Msa0565370:intron 45.0%
TTTGAGCTTCAAGATGGGTC+TGG - chr4_1:66259171-66259190 Msa0565370:intron 45.0%
! ACCTGGAAGTTTCTGGAAGT+CGG + chr4_1:66259265-66259284 None:intergenic 45.0%
TTCTTTCTCTCCTTGTCTCG+GGG - chr4_1:66259309-66259328 Msa0565370:intron 45.0%
!! AAGCATTGGAGTTGCTACCA+TGG - chr4_1:66259333-66259352 Msa0565370:intron 45.0%
! AGCATTGGAGTTGCTACCAT+GGG - chr4_1:66259334-66259353 Msa0565370:intron 45.0%
ACAATCTAGTGCTAGTCCCA+TGG + chr4_1:66259353-66259372 None:intergenic 45.0%
CATCCCAAGCTGCAAATACA+GGG + chr4_1:66259604-66259623 None:intergenic 45.0%
TCATCCCAAGCTGCAAATAC+AGG + chr4_1:66259605-66259624 None:intergenic 45.0%
! CTTCTAAAGAATCCGCATGC+TGG - chr4_1:66259732-66259751 Msa0565370:five_prime_UTR 45.0%
!!! TTAATTTTAAAAAATAAAAG+AGG + chr4_1:66259970-66259989 None:intergenic 5.0%
!! TGCAAGGAGGGTGTTGTGAA+GGG + chr4_1:66255252-66255271 None:intergenic 50.0%
!! TTGCAAGGAGGGTGTTGTGA+AGG + chr4_1:66255253-66255272 None:intergenic 50.0%
! GGAGAGTGTAGTTGCAAGGA+GGG + chr4_1:66255264-66255283 None:intergenic 50.0%
! AGGAGAGTGTAGTTGCAAGG+AGG + chr4_1:66255265-66255284 None:intergenic 50.0%
GGGGGAGAAGAATAAGCCAA+AGG + chr4_1:66255285-66255304 None:intergenic 50.0%
AGATGCAGAAGAAGGGAAGG+GGG + chr4_1:66255303-66255322 None:intergenic 50.0%
CAGATGCAGAAGAAGGGAAG+GGG + chr4_1:66255304-66255323 None:intergenic 50.0%
GCAGATGCAGAAGAAGGGAA+GGG + chr4_1:66255305-66255324 None:intergenic 50.0%
AGCAGATGCAGAAGAAGGGA+AGG + chr4_1:66255306-66255325 None:intergenic 50.0%
GTAGAGAGAGGGATTGGAAG+AGG + chr4_1:66255341-66255360 None:intergenic 50.0%
GAGGAAGTAGAGAGAGGGAT+TGG + chr4_1:66255347-66255366 None:intergenic 50.0%
GTTTCGGAGGAAGTAGAGAG+AGG + chr4_1:66255353-66255372 None:intergenic 50.0%
AACATCACGGCATGTTTCGG+AGG + chr4_1:66255366-66255385 None:intergenic 50.0%
GTAACAACCTCAGGAGCAGT+TGG + chr4_1:66255410-66255429 None:intergenic 50.0%
TTGATACTGGTCGCAACCGT+TGG - chr4_1:66255480-66255499 Msa0565370:intron 50.0%
! CTGTGTCGGTGCTTCTTCAT+AGG - chr4_1:66255857-66255876 Msa0565370:intron 50.0%
CAACATCATCAAGCGGATGC+TGG - chr4_1:66256007-66256026 Msa0565370:intron 50.0%
TCTTTGCAATATCAGGGGGG+TGG + chr4_1:66256167-66256186 None:intergenic 50.0%
CCATTGTAGGTGCGACATCA+AGG + chr4_1:66256259-66256278 None:intergenic 50.0%
CCTTGATGTCGCACCTACAA+TGG - chr4_1:66256256-66256275 Msa0565370:five_prime_UTR 50.0%
! CTGTCTGTGCCACTACAACA+TGG - chr4_1:66256311-66256330 Msa0565370:five_prime_UTR 50.0%
CATGTCATACCTCGCCATCT+TGG + chr4_1:66256587-66256606 None:intergenic 50.0%
ATGGCGAGGTATGACATGAC+TGG - chr4_1:66256589-66256608 Msa0565370:intron 50.0%
! AAATGGAGACCATGGGCTGA+AGG - chr4_1:66256645-66256664 Msa0565370:intron 50.0%
! AGACCATGGGCTGAAGGTAT+TGG - chr4_1:66256651-66256670 Msa0565370:intron 50.0%
!! GACCATGGGCTGAAGGTATT+GGG - chr4_1:66256652-66256671 Msa0565370:intron 50.0%
ATCCCAATACCTTCAGCCCA+TGG + chr4_1:66256657-66256676 None:intergenic 50.0%
! TCATTCTGCTGGTGTCAGAC+AGG - chr4_1:66256696-66256715 Msa0565370:intron 50.0%
TCCATTAGGGCCTTGCAACA+GGG + chr4_1:66257029-66257048 None:intergenic 50.0%
TTCCATTAGGGCCTTGCAAC+AGG + chr4_1:66257030-66257049 None:intergenic 50.0%
GAGCAGGTGCCAAACTAACT+TGG + chr4_1:66257092-66257111 None:intergenic 50.0%
CGTTGTTGTCAGCTCAAGCA+TGG - chr4_1:66257158-66257177 Msa0565370:intron 50.0%
CAGCTCAAGCATGGAAACTG+TGG - chr4_1:66257167-66257186 Msa0565370:intron 50.0%
CACACCAGTCTCTTACCGTA+TGG - chr4_1:66257232-66257251 Msa0565370:intron 50.0%
!! TAATCTTGGTGGGCTAGTGC+AGG - chr4_1:66257467-66257486 Msa0565370:five_prime_UTR 50.0%
TCGTGCAGATTATGGCTGAG+AGG - chr4_1:66257632-66257651 Msa0565370:five_prime_UTR 50.0%
ACTCTGTACAGAAAAGGGGG+AGG + chr4_1:66258302-66258321 None:intergenic 50.0%
!! ACAACAGCTTGCTGGAACTG+GGG + chr4_1:66258605-66258624 None:intergenic 50.0%
! ACAAGAGGAGCACGGATCAA+TGG + chr4_1:66258641-66258660 None:intergenic 50.0%
! CCTGGAAGTTTCTGGAAGTC+GGG + chr4_1:66259264-66259283 None:intergenic 50.0%
CCAAGCTGCAAATACAGGGA+GGG + chr4_1:66259600-66259619 None:intergenic 50.0%
CCTCCCTGTATTTGCAGCTT+GGG - chr4_1:66259598-66259617 Msa0565370:five_prime_UTR 50.0%
! GGAGTGGTGGAGAGTGATGA+AGG + chr4_1:66255158-66255177 None:intergenic 55.0%
GAGAGAGGGATTGGAAGAGG+AGG + chr4_1:66255338-66255357 None:intergenic 55.0%
! ACCGTTGGTCTCAGGATACC+TGG - chr4_1:66255495-66255514 Msa0565370:intron 55.0%
GCCAGGTATCCTGAGACCAA+CGG + chr4_1:66255499-66255518 None:intergenic 55.0%
TTGGTCTCAGGATACCTGGC+AGG - chr4_1:66255499-66255518 Msa0565370:intron 55.0%
AAGCGGATGCTGGCCAGTTT+GGG - chr4_1:66256017-66256036 Msa0565370:intron 55.0%
CTGACACCAGCAGAATGAGC+AGG + chr4_1:66256694-66256713 None:intergenic 55.0%
TCCCTGTTGCAAGGCCCTAA+TGG - chr4_1:66257025-66257044 Msa0565370:intron 55.0%
!! CAACAGCTTGCTGGAACTGG+GGG + chr4_1:66258604-66258623 None:intergenic 55.0%
GCTTCAAGATGGGTCTGGTG+TGG - chr4_1:66259176-66259195 Msa0565370:intron 55.0%
CCCGACTTCCAGAAACTTCC+AGG - chr4_1:66259261-66259280 Msa0565370:intron 55.0%
CCCTCCCTGTATTTGCAGCT+TGG - chr4_1:66259597-66259616 Msa0565370:five_prime_UTR 55.0%
CCCAAGCTGCAAATACAGGG+AGG + chr4_1:66259601-66259620 None:intergenic 55.0%
ACATGGCAGCTTCCAGCATG+CGG + chr4_1:66259747-66259766 None:intergenic 55.0%
CGCAGTTCCAACTGCTCCTG+AGG - chr4_1:66255400-66255419 Msa0565370:intron 60.0%
! TGGTCGCAACCGTTGGTCTC+AGG - chr4_1:66255487-66255506 Msa0565370:intron 60.0%
!! GTCGGTGTTGGTGTCGAGTC+TGG - chr4_1:66255825-66255844 Msa0565370:intron 60.0%
CAAGCGGATGCTGGCCAGTT+TGG - chr4_1:66256016-66256035 Msa0565370:intron 60.0%
TGGCATGGCAAGTGCCCGTA+AGG + chr4_1:66256147-66256166 None:intergenic 60.0%
GCAATATCAGGGGGGTGGCA+TGG + chr4_1:66256162-66256181 None:intergenic 60.0%
GACGGTCCTGCTCATTCTGC+TGG - chr4_1:66256685-66256704 Msa0565370:intron 60.0%
CCAATGCTTGCCCCGAGACA+AGG + chr4_1:66259322-66259341 None:intergenic 60.0%
CCTTGTCTCGGGGCAAGCAT+TGG - chr4_1:66259319-66259338 Msa0565370:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 66254889 66260055 66254889 ID=Msa0565370;Name=Msa0565370
chr4_1 mRNA 66254889 66260055 66254889 ID=Msa0565370-mRNA-1;Parent=Msa0565370;Name=Msa0565370-mRNA-1;_AED=0.14;_eAED=0.14;_QI=1582|1|1|1|0.9|0.72|11|385|97
chr4_1 exon 66254889 66255329 66254889 ID=Msa0565370-mRNA-1:exon:21442;Parent=Msa0565370-mRNA-1
chr4_1 exon 66255662 66255791 66255662 ID=Msa0565370-mRNA-1:exon:21441;Parent=Msa0565370-mRNA-1
chr4_1 exon 66255876 66255938 66255876 ID=Msa0565370-mRNA-1:exon:21440;Parent=Msa0565370-mRNA-1
chr4_1 exon 66256025 66256366 66256025 ID=Msa0565370-mRNA-1:exon:21439;Parent=Msa0565370-mRNA-1
chr4_1 exon 66256938 66256982 66256938 ID=Msa0565370-mRNA-1:exon:21438;Parent=Msa0565370-mRNA-1
chr4_1 exon 66257456 66257532 66257456 ID=Msa0565370-mRNA-1:exon:21437;Parent=Msa0565370-mRNA-1
chr4_1 exon 66257606 66257774 66257606 ID=Msa0565370-mRNA-1:exon:21436;Parent=Msa0565370-mRNA-1
chr4_1 exon 66257878 66257981 66257878 ID=Msa0565370-mRNA-1:exon:21435;Parent=Msa0565370-mRNA-1
chr4_1 exon 66258227 66258364 66258227 ID=Msa0565370-mRNA-1:exon:21434;Parent=Msa0565370-mRNA-1
chr4_1 exon 66258871 66258990 66258871 ID=Msa0565370-mRNA-1:exon:21433;Parent=Msa0565370-mRNA-1
chr4_1 exon 66259424 66260055 66259424 ID=Msa0565370-mRNA-1:exon:21432;Parent=Msa0565370-mRNA-1
chr4_1 five_prime_UTR 66259424 66260055 66259424 ID=Msa0565370-mRNA-1:five_prime_utr;Parent=Msa0565370-mRNA-1
chr4_1 five_prime_UTR 66258871 66258990 66258871 ID=Msa0565370-mRNA-1:five_prime_utr;Parent=Msa0565370-mRNA-1
chr4_1 five_prime_UTR 66258227 66258364 66258227 ID=Msa0565370-mRNA-1:five_prime_utr;Parent=Msa0565370-mRNA-1
chr4_1 five_prime_UTR 66257878 66257981 66257878 ID=Msa0565370-mRNA-1:five_prime_utr;Parent=Msa0565370-mRNA-1
chr4_1 five_prime_UTR 66257606 66257774 66257606 ID=Msa0565370-mRNA-1:five_prime_utr;Parent=Msa0565370-mRNA-1
chr4_1 five_prime_UTR 66257456 66257532 66257456 ID=Msa0565370-mRNA-1:five_prime_utr;Parent=Msa0565370-mRNA-1
chr4_1 five_prime_UTR 66256938 66256982 66256938 ID=Msa0565370-mRNA-1:five_prime_utr;Parent=Msa0565370-mRNA-1
chr4_1 five_prime_UTR 66256070 66256366 66256070 ID=Msa0565370-mRNA-1:five_prime_utr;Parent=Msa0565370-mRNA-1
chr4_1 CDS 66256025 66256069 66256025 ID=Msa0565370-mRNA-1:cds;Parent=Msa0565370-mRNA-1
chr4_1 CDS 66255876 66255938 66255876 ID=Msa0565370-mRNA-1:cds;Parent=Msa0565370-mRNA-1
chr4_1 CDS 66255662 66255791 66255662 ID=Msa0565370-mRNA-1:cds;Parent=Msa0565370-mRNA-1
chr4_1 CDS 66255274 66255329 66255274 ID=Msa0565370-mRNA-1:cds;Parent=Msa0565370-mRNA-1
chr4_1 three_prime_UTR 66254889 66255273 66254889 ID=Msa0565370-mRNA-1:three_prime_utr;Parent=Msa0565370-mRNA-1
Gene Sequence

>Msa0565370

ATGCAGGTTTTAGTGAATGACAAGACTGCTAGTGCTAGTGAAATAGTTGCTTCTGCACTTCACGATAATTGTCGAGCTGTTCTCGTTGGAAAACGCACATATGGCAAGGGCTTAATCCAATCTGTATTTGAGCTTCAAGATGGGTCTGGTGTGGTTATAACTGTTGGGAAGTATGTAACACCAAAGCACAAGGACATAAATGGCAACGGAATAGTGCCCGACTTCCAGAAACTTCCAGCTTGGGATGATGTCAGCCAACATCTTTCAAAATGCAGTATGCTTCAGCAAGGATAA

Protein sequence

>Msa0565370

MQVLVNDKTASASEIVASALHDNCRAVLVGKRTYGKGLIQSVFELQDGSGVVITVGKYVTPKHKDINGNGIVPDFQKLPAWDDVSQHLSKCSMLQQG*