AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0648810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648810 MtrunA17_Chr4g0040451 95.890 219 9 0 1 219 1 219 1.78e-157 434
Msa0648810 MtrunA17_Chr6g0465041 30.137 146 101 1 75 219 78 223 2.10e-16 75.1
Msa0648810 MtrunA17_Chr1g0207521 24.823 141 105 1 75 214 107 247 6.93e-13 65.9
Msa0648810 MtrunA17_Chr7g0255351 28.415 183 112 3 37 219 92 255 9.56e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648810 AT2G42770.1 72.283 184 48 1 39 219 49 232 1.78e-95 278
Msa0648810 AT5G43140.1 29.452 146 102 1 75 219 104 249 4.83e-18 80.5
Msa0648810 AT4G33905.1 29.078 141 99 1 75 214 108 248 4.28e-15 72.4
Msa0648810 AT2G14860.1 26.712 146 105 2 76 219 99 244 2.92e-13 67.4

Find 87 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCTTCCCACTTTACTTTA+TGG 0.111803 4_3:+55332685 Msa0648810:CDS
TCTTTGCATGGAACAATTTA+TGG 0.112525 4_3:+55332620 Msa0648810:CDS
TGTCAATGGGCTCAATATTT+TGG 0.126119 4_3:+55333836 Msa0648810:CDS
CTGTCAGTGTATTAAATTTC+TGG 0.134675 4_3:+55332811 Msa0648810:CDS
TTCCAATTAAGACTTATATT+TGG 0.167204 4_3:+55334162 Msa0648810:three_prime_UTR
CACATGGACCCAACACAATT+TGG 0.192502 4_3:-55332585 None:intergenic
TCCCAAATATAAGTCTTAAT+TGG 0.200883 4_3:-55334164 None:intergenic
AACATTGCATGTGCTTAAAA+AGG 0.248373 4_3:+55334327 Msa0648810:three_prime_UTR
ATAATTTGAGTACATTATTA+TGG 0.248665 4_3:+55334186 Msa0648810:three_prime_UTR
TTGATGGAAATTCTTACTTT+TGG 0.263005 4_3:-55334408 None:intergenic
ACTGCCTCCCAGCATGTTTC+CGG 0.270902 4_3:-55334236 None:intergenic
TGTCCAGAACCTAATGTTAA+AGG 0.277336 4_3:+55332446 Msa0648810:CDS
CGGAGGTGGTTATCAGTTTC+CGG 0.280297 4_3:+55331918 Msa0648810:CDS
GGAATGGACGCGATTGGATT+TGG 0.285779 4_3:+55331802 Msa0648810:exon
CGTCGGATTCGTTCAAATTC+GGG 0.288617 4_3:+55331877 Msa0648810:CDS
TCCAATTAAGACTTATATTT+GGG 0.294414 4_3:+55334163 Msa0648810:three_prime_UTR
GTTAATTGTTGATCTGATTT+CGG 0.300060 4_3:+55334208 Msa0648810:three_prime_UTR
GCCGTTGAGAATCTCGTTTC+GGG 0.302860 4_3:-55331855 None:intergenic
GCGTCGGATTCGTTCAAATT+CGG 0.314702 4_3:+55331876 Msa0648810:CDS
AACATTAGGTTCTGGACATT+TGG 0.316911 4_3:-55332441 None:intergenic
CGCCGTTGAGAATCTCGTTT+CGG 0.324604 4_3:-55331856 None:intergenic
GCCGCGTCGCTTACTCTTAC+TGG 0.342995 4_3:+55331958 Msa0648810:CDS
TAATTAATACCTTTAACATT+AGG 0.343770 4_3:-55332455 None:intergenic
GGTTCTGGACATTTGGCTTT+GGG 0.347006 4_3:-55332434 None:intergenic
GTCACCCTTGGAATGATCTT+TGG 0.351053 4_3:+55334267 Msa0648810:three_prime_UTR
ACAAAAGCTTTCAGAGCTTC+CGG 0.364498 4_3:+55332645 Msa0648810:CDS
GAATGGACGCGATTGGATTT+GGG 0.365048 4_3:+55331803 Msa0648810:exon
ACTTGTTCATAGTTGATGAT+AGG 0.367450 4_3:-55333867 None:intergenic
AAGGGTTCTTTAGGATGTAT+TGG 0.367842 4_3:+55332299 Msa0648810:intron
AGGTTCTGGACATTTGGCTT+TGG 0.375932 4_3:-55332435 None:intergenic
GGACCAGATGAGCTATTGTT+TGG 0.399854 4_3:+55334348 Msa0648810:three_prime_UTR
CAGAGTGGCTTTCATGTCAA+TGG 0.403097 4_3:+55333822 Msa0648810:CDS
TAATAGAGAGATTATTATAT+AGG 0.404073 4_3:+55334131 Msa0648810:three_prime_UTR
ATACCTTTAACATTAGGTTC+TGG 0.414480 4_3:-55332449 None:intergenic
TAACCAAACAATAGCTCATC+TGG 0.417797 4_3:-55334351 None:intergenic
TGGTATGTTACAATACTTGT+TGG 0.424655 4_3:+55334287 Msa0648810:three_prime_UTR
CCTGGTTCCGCCGTCGGAGG+TGG 0.446747 4_3:+55331904 Msa0648810:CDS
TTACTAAACCAAATTGTGTT+GGG 0.447561 4_3:+55332577 Msa0648810:CDS
CGTTCAAATTCGGGTTCACC+TGG 0.447762 4_3:+55331886 Msa0648810:CDS
CAGAAATTTAATACACTGAC+AGG 0.448515 4_3:-55332810 None:intergenic
GGAGACAATGGTCAAGCAAC+TGG 0.451380 4_3:-55332413 None:intergenic
CGGAAAGACCGGAAACATGC+TGG 0.458895 4_3:+55334228 Msa0648810:three_prime_UTR
TCTCTTTAGCTTTGTTCCAC+CGG 0.468029 4_3:-55332005 None:intergenic
GACATGAAAGCCACTCTGGC+TGG 0.468430 4_3:-55333817 None:intergenic
CATTGACATGAAAGCCACTC+TGG 0.472403 4_3:-55333821 None:intergenic
GCAGTTAACGCCTGCTTCAC+CGG 0.477885 4_3:-55331937 None:intergenic
GAGTGGTGAAAATGCCTCTC+AGG 0.482368 4_3:+55332026 Msa0648810:CDS
GGTTCACCTGGTTCCGCCGT+CGG 0.491942 4_3:+55331898 Msa0648810:CDS
TTTACTAAACCAAATTGTGT+TGG 0.492300 4_3:+55332576 Msa0648810:CDS
GACGCGATTGGATTTGGGAA+TGG 0.496404 4_3:+55331808 Msa0648810:CDS
GCTCTGCGAATGACTTCCTA+TGG 0.499911 4_3:+55332354 Msa0648810:CDS
TGATCTGATTTCGGAAAGAC+CGG 0.506115 4_3:+55334217 Msa0648810:three_prime_UTR
TTATCAGTTTCCGGTGAAGC+AGG 0.513247 4_3:+55331927 Msa0648810:CDS
TGAAGAAAATTTGTTGCTTG+TGG 0.514759 4_3:+55331604 Msa0648810:five_prime_UTR
AGAGTGGCTTTCATGTCAAT+GGG 0.522920 4_3:+55333823 Msa0648810:CDS
AAGAACCAGGACCATAGAAA+AGG 0.527321 4_3:-55332380 None:intergenic
CCACCTCCGACGGCGGAACC+AGG 0.528246 4_3:-55331904 None:intergenic
TTTGTACCATAAAGTAAAGT+GGG 0.532650 4_3:-55332691 None:intergenic
AAAGCCACTCTGGCTGGAAG+AGG 0.533546 4_3:-55333811 None:intergenic
GTTTGTACCATAAAGTAAAG+TGG 0.534203 4_3:-55332692 None:intergenic
CATTTGGCTTTGGGAGACAA+TGG 0.544393 4_3:-55332425 None:intergenic
GGTGCCTCTTCCAGCCAGAG+TGG 0.561435 4_3:+55333807 Msa0648810:CDS
CTGATAACCACCTCCGACGG+CGG 0.561979 4_3:-55331911 None:intergenic
TCATTGCGGTTATCTTTGCA+TGG 0.564794 4_3:+55332608 Msa0648810:CDS
TGTTTGAAATTCTTACAATG+AGG 0.567069 4_3:+55333923 Msa0648810:three_prime_UTR
ATGGTCAAGCAACTGGTACC+AGG 0.567339 4_3:-55332406 None:intergenic
TCACCTGGTTCCGCCGTCGG+AGG 0.567431 4_3:+55331901 Msa0648810:CDS
TGGTACCAGGCAAAAGAACC+AGG 0.572490 4_3:-55332393 None:intergenic
TGCGAGGGAATGGACGCGAT+TGG 0.572598 4_3:+55331796 Msa0648810:exon
GGATTCTGATGACCCAATTG+TGG 0.577335 4_3:+55331578 Msa0648810:five_prime_UTR
AACGAGATTCTCAACGGCGT+CGG 0.580604 4_3:+55331860 Msa0648810:CDS
CGATTGCTCAGCTCAGTAGC+CGG 0.582836 4_3:+55331986 Msa0648810:CDS
GGAAAGACCGGAAACATGCT+GGG 0.587992 4_3:+55334229 Msa0648810:three_prime_UTR
ACATACCAAAGATCATTCCA+AGG 0.607226 4_3:-55334272 None:intergenic
AAGATAACCGCAATGACACA+TGG 0.607959 4_3:-55332601 None:intergenic
ACCATAGAAAAGGAATCCAT+AGG 0.619871 4_3:-55332370 None:intergenic
AAACTGATAACCACCTCCGA+CGG 0.632014 4_3:-55331914 None:intergenic
ATTTGACACTCTGAAAGCTG+TGG 0.644992 4_3:+55334055 Msa0648810:three_prime_UTR
TTGCTCAGCTCAGTAGCCGG+TGG 0.657176 4_3:+55331989 Msa0648810:CDS
TGGAACAAAGCTAAAGAGAG+TGG 0.660771 4_3:+55332009 Msa0648810:CDS
ACCCGAAACGAGATTCTCAA+CGG 0.671667 4_3:+55331854 Msa0648810:CDS
GTTGGGTCCATGTGTCATTG+CGG 0.690123 4_3:+55332594 Msa0648810:CDS
AATATTTACACTAACCTGAG+AGG 0.693145 4_3:-55332040 None:intergenic
CATACCAAAGATCATTCCAA+GGG 0.694101 4_3:-55334271 None:intergenic
AGAAATTTAATACACTGACA+GGG 0.717165 4_3:-55332809 None:intergenic
AAGACCGGAAACATGCTGGG+AGG 0.755788 4_3:+55334232 Msa0648810:three_prime_UTR
ACCAGTAAGAGTAAGCGACG+CGG 0.763238 4_3:-55331959 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATAAAAATCGAATTTTTA+TGG - chr4_3:55331650-55331669 None:intergenic 10.0%
!!! ATCGATTTTTTAAAAAAAAT+TGG + chr4_3:55331686-55331705 Msa0648810:five_prime_UTR 10.0%
!!! TTTTTAAAAAAAATTGGAAA+AGG + chr4_3:55331692-55331711 Msa0648810:five_prime_UTR 10.0%
!!! TAAAATATAGTATATTGATT+AGG - chr4_3:55333318-55333337 None:intergenic 10.0%
!!! AAAAAAAGTAATTTTTGACA+CGG + chr4_3:55331557-55331576 Msa0648810:five_prime_UTR 15.0%
!!! ACAAAATAAGCTTATTTTTT+AGG + chr4_3:55332177-55332196 Msa0648810:intron 15.0%
!! TAATTAATACCTTTAACATT+AGG - chr4_3:55332458-55332477 None:intergenic 15.0%
!! ATATGTGTGTTTATATAAAA+CGG - chr4_3:55332936-55332955 None:intergenic 15.0%
!! TTTAAGAAAATAGAAGTAAT+TGG + chr4_3:55333539-55333558 Msa0648810:intron 15.0%
!! TAATAGAGAGATTATTATAT+AGG + chr4_3:55334131-55334150 Msa0648810:three_prime_UTR 15.0%
!! ATAATTTGAGTACATTATTA+TGG + chr4_3:55334186-55334205 Msa0648810:three_prime_UTR 15.0%
!!! TTTTAGTTAATTACATTTGA+TGG - chr4_3:55334427-55334446 None:intergenic 15.0%
!! ATAGTTTAAGTATCTCTATT+AGG + chr4_3:55332097-55332116 Msa0648810:intron 20.0%
!! TAGTTTAAGTATCTCTATTA+GGG + chr4_3:55332098-55332117 Msa0648810:intron 20.0%
!! TAAGAAAAAGTTGCATATAT+AGG - chr4_3:55333009-55333028 None:intergenic 20.0%
!!! TAAGTAATATAAGTGTCATT+TGG + chr4_3:55333262-55333281 Msa0648810:intron 20.0%
!!! TTCCACTTTTATAATTTGTT+TGG + chr4_3:55333970-55333989 Msa0648810:intron 20.0%
!! GTTAATTAATCTACAAATAC+AGG - chr4_3:55334015-55334034 None:intergenic 20.0%
!! TTCCAATTAAGACTTATATT+TGG + chr4_3:55334162-55334181 Msa0648810:three_prime_UTR 20.0%
!! TCCAATTAAGACTTATATTT+GGG + chr4_3:55334163-55334182 Msa0648810:three_prime_UTR 20.0%
!! TTTTCTTCAATTCCACAATT+GGG - chr4_3:55331593-55331612 None:intergenic 25.0%
!! ATTTTCTTCAATTCCACAAT+TGG - chr4_3:55331594-55331613 None:intergenic 25.0%
! AGTTTGGTATTAACCAAAAA+AGG + chr4_3:55332280-55332299 Msa0648810:intron 25.0%
! GTTTGGTATTAACCAAAAAA+GGG + chr4_3:55332281-55332300 Msa0648810:intron 25.0%
! TTTCATCTATAAATGATGTC+TGG + chr4_3:55332480-55332499 Msa0648810:intron 25.0%
! TTTACTAAACCAAATTGTGT+TGG + chr4_3:55332576-55332595 Msa0648810:CDS 25.0%
! TTACTAAACCAAATTGTGTT+GGG + chr4_3:55332577-55332596 Msa0648810:CDS 25.0%
! TTTGTACCATAAAGTAAAGT+GGG - chr4_3:55332694-55332713 None:intergenic 25.0%
! AGAAATTTAATACACTGACA+GGG - chr4_3:55332812-55332831 None:intergenic 25.0%
!! TAGATTATACCTTTTCACTA+GGG - chr4_3:55332985-55333004 None:intergenic 25.0%
! AACTGCAACTATAAGATAAA+GGG - chr4_3:55333164-55333183 None:intergenic 25.0%
! AAACTGCAACTATAAGATAA+AGG - chr4_3:55333165-55333184 None:intergenic 25.0%
! AAATCTTGAAGTTAAGCAAT+TGG - chr4_3:55333229-55333248 None:intergenic 25.0%
! TCCATATTAAGAAAATTAGG+CGG - chr4_3:55333415-55333434 None:intergenic 25.0%
! TCGTCCATATTAAGAAAATT+AGG - chr4_3:55333418-55333437 None:intergenic 25.0%
! TGTAGGTATAAATAGCTATT+AGG + chr4_3:55333644-55333663 Msa0648810:intron 25.0%
! GTAGGTATAAATAGCTATTA+GGG + chr4_3:55333645-55333664 Msa0648810:intron 25.0%
! CATACTTACTCTACTAATTA+AGG + chr4_3:55333686-55333705 Msa0648810:intron 25.0%
! TGATCATTCTACTAATTATC+TGG + chr4_3:55333712-55333731 Msa0648810:intron 25.0%
! ACTAATTATCTGGTTATTTG+TGG + chr4_3:55333722-55333741 Msa0648810:intron 25.0%
!!! TATTTTTATGGCTCTGTATA+GGG + chr4_3:55333783-55333802 Msa0648810:intron 25.0%
!! TGTTTGAAATTCTTACAATG+AGG + chr4_3:55333923-55333942 Msa0648810:three_prime_UTR 25.0%
! AGCCAAACAAATTATAAAAG+TGG - chr4_3:55333975-55333994 None:intergenic 25.0%
! AATCTACAAATACAGGATAA+TGG - chr4_3:55334008-55334027 None:intergenic 25.0%
! TCCCAAATATAAGTCTTAAT+TGG - chr4_3:55334167-55334186 None:intergenic 25.0%
! GTTAATTGTTGATCTGATTT+CGG + chr4_3:55334208-55334227 Msa0648810:three_prime_UTR 25.0%
!!! TACTTTTGGAATTAACCAAT+TGG - chr4_3:55334397-55334416 None:intergenic 25.0%
!! TTGATGGAAATTCTTACTTT+TGG - chr4_3:55334411-55334430 None:intergenic 25.0%
!! TGAAGAAAATTTGTTGCTTG+TGG + chr4_3:55331604-55331623 Msa0648810:five_prime_UTR 30.0%
!!! ATTTTTCGGGTTTTGGAAAT+GGG + chr4_3:55331831-55331850 Msa0648810:CDS 30.0%
AATATTTACACTAACCTGAG+AGG - chr4_3:55332043-55332062 None:intergenic 30.0%
CCATTATCACTGAAAATTGA+AGG - chr4_3:55332069-55332088 None:intergenic 30.0%
! CCTTCAATTTTCAGTGATAA+TGG + chr4_3:55332066-55332085 Msa0648810:intron 30.0%
TAACCAAAAAAGGGTTCTTT+AGG + chr4_3:55332290-55332309 Msa0648810:intron 30.0%
ATACCTTTAACATTAGGTTC+TGG - chr4_3:55332452-55332471 None:intergenic 30.0%
! GTTTAATTAACAGAAGCATG+AGG + chr4_3:55332502-55332521 Msa0648810:intron 30.0%
!!! TTTTTTATCGTTTCGTTGAC+AGG + chr4_3:55332552-55332571 Msa0648810:intron 30.0%
TCTTTGCATGGAACAATTTA+TGG + chr4_3:55332620-55332639 Msa0648810:CDS 30.0%
! GCATCTCTTTTGTATTTTTC+CGG - chr4_3:55332667-55332686 None:intergenic 30.0%
GTTTGTACCATAAAGTAAAG+TGG - chr4_3:55332695-55332714 None:intergenic 30.0%
ACAATAACACTTAGGTAATG+AGG - chr4_3:55332717-55332736 None:intergenic 30.0%
AGTAAGTCACAATAACACTT+AGG - chr4_3:55332725-55332744 None:intergenic 30.0%
AACAGACAAATTACACAGAA+AGG - chr4_3:55332770-55332789 None:intergenic 30.0%
CAGAAATTTAATACACTGAC+AGG - chr4_3:55332813-55332832 None:intergenic 30.0%
CTGTCAGTGTATTAAATTTC+TGG + chr4_3:55332811-55332830 Msa0648810:CDS 30.0%
CAAGCAGAATATCAGATTTA+AGG - chr4_3:55332852-55332871 None:intergenic 30.0%
! CTAGATTATACCTTTTCACT+AGG - chr4_3:55332986-55333005 None:intergenic 30.0%
AAAAATGAACTAGCATGTCA+TGG - chr4_3:55333071-55333090 None:intergenic 30.0%
!!! GACATGCTAGTTCATTTTTT+AGG + chr4_3:55333072-55333091 Msa0648810:intron 30.0%
ACTGCAACTATAAGATAAAG+GGG - chr4_3:55333163-55333182 None:intergenic 30.0%
TTATAGTTGCAGTTTGCAAA+TGG + chr4_3:55333170-55333189 Msa0648810:intron 30.0%
! ACCGCCTAATTTTCTTAATA+TGG + chr4_3:55333411-55333430 Msa0648810:intron 30.0%
GTCTATAAGTATGGTTGTTA+GGG + chr4_3:55333454-55333473 Msa0648810:intron 30.0%
!!! TTGTTAGGGATTTTGTTGTT+TGG + chr4_3:55333468-55333487 Msa0648810:intron 30.0%
!!! TGTTAGGGATTTTGTTGTTT+GGG + chr4_3:55333469-55333488 Msa0648810:intron 30.0%
CTATACAGAGCCATAAAAAT+AGG - chr4_3:55333784-55333803 None:intergenic 30.0%
!!! CTATTTTTATGGCTCTGTAT+AGG + chr4_3:55333782-55333801 Msa0648810:intron 30.0%
!! ACTTGTTCATAGTTGATGAT+AGG - chr4_3:55333870-55333889 None:intergenic 30.0%
TGGTATGTTACAATACTTGT+TGG + chr4_3:55334287-55334306 Msa0648810:three_prime_UTR 30.0%
AACATTGCATGTGCTTAAAA+AGG + chr4_3:55334327-55334346 Msa0648810:three_prime_UTR 30.0%
!! GGATTTGGGAATGGATTTTT+CGG + chr4_3:55331817-55331836 Msa0648810:CDS 35.0%
!! GATTTGGGAATGGATTTTTC+GGG + chr4_3:55331818-55331837 Msa0648810:CDS 35.0%
!!! GATTTTTCGGGTTTTGGAAA+TGG + chr4_3:55331830-55331849 Msa0648810:CDS 35.0%
TGTTGTGTTATCTAGTCTAG+TGG + chr4_3:55332245-55332264 Msa0648810:intron 35.0%
TAGTCTAGTGGTGAATACTT+TGG + chr4_3:55332257-55332276 Msa0648810:intron 35.0%
!!! CATCCTAAAGAACCCTTTTT+TGG - chr4_3:55332296-55332315 None:intergenic 35.0%
!! AAGGGTTCTTTAGGATGTAT+TGG + chr4_3:55332299-55332318 Msa0648810:intron 35.0%
! TCCTATGGATTCCTTTTCTA+TGG + chr4_3:55332369-55332388 Msa0648810:CDS 35.0%
ACCATAGAAAAGGAATCCAT+AGG - chr4_3:55332373-55332392 None:intergenic 35.0%
!! AACATTAGGTTCTGGACATT+TGG - chr4_3:55332444-55332463 None:intergenic 35.0%
TGTCCAGAACCTAATGTTAA+AGG + chr4_3:55332446-55332465 Msa0648810:CDS 35.0%
! TCTGTGTAATTTGTCTGTTC+AGG + chr4_3:55332771-55332790 Msa0648810:intron 35.0%
!!! TCTGTTCAGGTTTTAGATTC+TGG + chr4_3:55332784-55332803 Msa0648810:intron 35.0%
AATTCACTTCCCTAGTGAAA+AGG + chr4_3:55332973-55332992 Msa0648810:intron 35.0%
!!! TGTCTTGCATTTTAGAGTGA+GGG + chr4_3:55333193-55333212 Msa0648810:intron 35.0%
ACAGCAAAGGTCTATAAGTA+TGG + chr4_3:55333445-55333464 Msa0648810:intron 35.0%
GGTCTATAAGTATGGTTGTT+AGG + chr4_3:55333453-55333472 Msa0648810:intron 35.0%
!!! ACCTTCCTTGCCTATTTTTA+TGG + chr4_3:55333771-55333790 Msa0648810:intron 35.0%
!! TGTCAATGGGCTCAATATTT+TGG + chr4_3:55333836-55333855 Msa0648810:CDS 35.0%
!! AGAGTGTCAAATCTTTTGCA+GGG - chr4_3:55334047-55334066 None:intergenic 35.0%
CATACCAAAGATCATTCCAA+GGG - chr4_3:55334274-55334293 None:intergenic 35.0%
ACATACCAAAGATCATTCCA+AGG - chr4_3:55334275-55334294 None:intergenic 35.0%
TAACCAAACAATAGCTCATC+TGG - chr4_3:55334354-55334373 None:intergenic 35.0%
! TTCAGCTTTTTGCAACCAAT+TGG + chr4_3:55334379-55334398 Msa0648810:three_prime_UTR 35.0%
! AGCATAAAACGCTGCGTTTT+TGG + chr4_3:55331723-55331742 Msa0648810:five_prime_UTR 40.0%
!!! TGCGTATTTTTTTGTGTGCG+AGG + chr4_3:55331780-55331799 Msa0648810:five_prime_UTR 40.0%
!!! GCGTATTTTTTTGTGTGCGA+GGG + chr4_3:55331781-55331800 Msa0648810:five_prime_UTR 40.0%
!!! TTTTTTTGTGTGCGAGGGAA+TGG + chr4_3:55331786-55331805 Msa0648810:exon 40.0%
!!! GGAATGGATTTTTCGGGTTT+TGG + chr4_3:55331824-55331843 Msa0648810:CDS 40.0%
!! TCTCTTTAGCTTTGTTCCAC+CGG - chr4_3:55332008-55332027 None:intergenic 40.0%
TGGAACAAAGCTAAAGAGAG+TGG + chr4_3:55332009-55332028 Msa0648810:CDS 40.0%
!! GTGGTGAATACTTTGGAGTT+TGG + chr4_3:55332264-55332283 Msa0648810:intron 40.0%
AAGAACCAGGACCATAGAAA+AGG - chr4_3:55332383-55332402 None:intergenic 40.0%
AAGATAACCGCAATGACACA+TGG - chr4_3:55332604-55332623 None:intergenic 40.0%
TCATTGCGGTTATCTTTGCA+TGG + chr4_3:55332608-55332627 Msa0648810:CDS 40.0%
ACAAAAGCTTTCAGAGCTTC+CGG + chr4_3:55332645-55332664 Msa0648810:CDS 40.0%
GCTCTTCCCACTTTACTTTA+TGG + chr4_3:55332685-55332704 Msa0648810:CDS 40.0%
GTGAGTATCTTGTATCGAGT+TGG + chr4_3:55333121-55333140 Msa0648810:intron 40.0%
!!! GTGTCTTGCATTTTAGAGTG+AGG + chr4_3:55333192-55333211 Msa0648810:intron 40.0%
!!! GTCTTGCATTTTAGAGTGAG+GGG + chr4_3:55333194-55333213 Msa0648810:intron 40.0%
!!! TCTTGCATTTTAGAGTGAGG+GGG + chr4_3:55333195-55333214 Msa0648810:intron 40.0%
GTGCCTTCAATAAGAAGTCT+CGG + chr4_3:55333601-55333620 Msa0648810:intron 40.0%
TACATCGCTTGTGATCATGT+AGG + chr4_3:55333627-55333646 Msa0648810:intron 40.0%
GCCATAAAAATAGGCAAGGA+AGG - chr4_3:55333775-55333794 None:intergenic 40.0%
CAGAGCCATAAAAATAGGCA+AGG - chr4_3:55333779-55333798 None:intergenic 40.0%
!! TTTTATGGCTCTGTATAGGG+TGG + chr4_3:55333786-55333805 Msa0648810:intron 40.0%
AGAGTGGCTTTCATGTCAAT+GGG + chr4_3:55333823-55333842 Msa0648810:CDS 40.0%
!! CAGAGTGTCAAATCTTTTGC+AGG - chr4_3:55334048-55334067 None:intergenic 40.0%
! ATTTGACACTCTGAAAGCTG+TGG + chr4_3:55334055-55334074 Msa0648810:three_prime_UTR 40.0%
TGATCTGATTTCGGAAAGAC+CGG + chr4_3:55334217-55334236 Msa0648810:three_prime_UTR 40.0%
GGATTCTGATGACCCAATTG+TGG + chr4_3:55331578-55331597 Msa0648810:five_prime_UTR 45.0%
GAATGGACGCGATTGGATTT+GGG + chr4_3:55331803-55331822 Msa0648810:exon 45.0%
ACCCGAAACGAGATTCTCAA+CGG + chr4_3:55331854-55331873 Msa0648810:CDS 45.0%
GCGTCGGATTCGTTCAAATT+CGG + chr4_3:55331876-55331895 Msa0648810:CDS 45.0%
CGTCGGATTCGTTCAAATTC+GGG + chr4_3:55331877-55331896 Msa0648810:CDS 45.0%
AAACTGATAACCACCTCCGA+CGG - chr4_3:55331917-55331936 None:intergenic 45.0%
TTATCAGTTTCCGGTGAAGC+AGG + chr4_3:55331927-55331946 Msa0648810:CDS 45.0%
TTAGGGCTCTCTGAATCTTG+AGG + chr4_3:55332115-55332134 Msa0648810:intron 45.0%
! GGATTCCTTTTCTATGGTCC+TGG + chr4_3:55332375-55332394 Msa0648810:CDS 45.0%
!! CATTTGGCTTTGGGAGACAA+TGG - chr4_3:55332428-55332447 None:intergenic 45.0%
!! GGTTCTGGACATTTGGCTTT+GGG - chr4_3:55332437-55332456 None:intergenic 45.0%
!! AGGTTCTGGACATTTGGCTT+TGG - chr4_3:55332438-55332457 None:intergenic 45.0%
CACATGGACCCAACACAATT+TGG - chr4_3:55332588-55332607 None:intergenic 45.0%
!!! CTTGCATTTTAGAGTGAGGG+GGG + chr4_3:55333196-55333215 Msa0648810:intron 45.0%
GGACGAAGTAGTAACAGCAA+AGG + chr4_3:55333432-55333451 Msa0648810:intron 45.0%
! GTAACTACGTACGCCAGTTT+TGG + chr4_3:55333564-55333583 Msa0648810:intron 45.0%
TGCTGGTGTTCAACCAAAAC+TGG - chr4_3:55333580-55333599 None:intergenic 45.0%
! TTCTTATTGAAGGCACGTGC+TGG - chr4_3:55333597-55333616 None:intergenic 45.0%
GCACCGAGACTTCTTATTGA+AGG - chr4_3:55333607-55333626 None:intergenic 45.0%
CATTGACATGAAAGCCACTC+TGG - chr4_3:55333824-55333843 None:intergenic 45.0%
CAGAGTGGCTTTCATGTCAA+TGG + chr4_3:55333822-55333841 Msa0648810:CDS 45.0%
!!! CAGTTTTTAGGTGTCACCCT+TGG + chr4_3:55334255-55334274 Msa0648810:three_prime_UTR 45.0%
GTCACCCTTGGAATGATCTT+TGG + chr4_3:55334267-55334286 Msa0648810:three_prime_UTR 45.0%
GGACCAGATGAGCTATTGTT+TGG + chr4_3:55334348-55334367 Msa0648810:three_prime_UTR 45.0%
GGAATGGACGCGATTGGATT+TGG + chr4_3:55331802-55331821 Msa0648810:exon 50.0%
GACGCGATTGGATTTGGGAA+TGG + chr4_3:55331808-55331827 Msa0648810:CDS 50.0%
GCCGTTGAGAATCTCGTTTC+GGG - chr4_3:55331858-55331877 None:intergenic 50.0%
CGCCGTTGAGAATCTCGTTT+CGG - chr4_3:55331859-55331878 None:intergenic 50.0%
AACGAGATTCTCAACGGCGT+CGG + chr4_3:55331860-55331879 Msa0648810:CDS 50.0%
! CGTTCAAATTCGGGTTCACC+TGG + chr4_3:55331886-55331905 Msa0648810:CDS 50.0%
CGGAGGTGGTTATCAGTTTC+CGG + chr4_3:55331918-55331937 Msa0648810:CDS 50.0%
ACCAGTAAGAGTAAGCGACG+CGG - chr4_3:55331962-55331981 None:intergenic 50.0%
GAGTGGTGAAAATGCCTCTC+AGG + chr4_3:55332026-55332045 Msa0648810:CDS 50.0%
GCTCTGCGAATGACTTCCTA+TGG + chr4_3:55332354-55332373 Msa0648810:CDS 50.0%
!! ATGGTCCTGGTTCTTTTGCC+TGG + chr4_3:55332388-55332407 Msa0648810:CDS 50.0%
TGGTACCAGGCAAAAGAACC+AGG - chr4_3:55332396-55332415 None:intergenic 50.0%
ATGGTCAAGCAACTGGTACC+AGG - chr4_3:55332409-55332428 None:intergenic 50.0%
GGAGACAATGGTCAAGCAAC+TGG - chr4_3:55332416-55332435 None:intergenic 50.0%
! GTTGGGTCCATGTGTCATTG+CGG + chr4_3:55332594-55332613 Msa0648810:CDS 50.0%
GGAAAGACCGGAAACATGCT+GGG + chr4_3:55334229-55334248 Msa0648810:three_prime_UTR 50.0%
! CATGCTGGGAGGCAGTTTTT+AGG + chr4_3:55334243-55334262 Msa0648810:three_prime_UTR 50.0%
GCAGTTAACGCCTGCTTCAC+CGG - chr4_3:55331940-55331959 None:intergenic 55.0%
CGATTGCTCAGCTCAGTAGC+CGG + chr4_3:55331986-55332005 Msa0648810:CDS 55.0%
AAAGCCACTCTGGCTGGAAG+AGG - chr4_3:55333814-55333833 None:intergenic 55.0%
GACATGAAAGCCACTCTGGC+TGG - chr4_3:55333820-55333839 None:intergenic 55.0%
CGGAAAGACCGGAAACATGC+TGG + chr4_3:55334228-55334247 Msa0648810:three_prime_UTR 55.0%
AAGACCGGAAACATGCTGGG+AGG + chr4_3:55334232-55334251 Msa0648810:three_prime_UTR 55.0%
ACTGCCTCCCAGCATGTTTC+CGG - chr4_3:55334239-55334258 None:intergenic 55.0%
TGCGAGGGAATGGACGCGAT+TGG + chr4_3:55331796-55331815 Msa0648810:exon 60.0%
CTGATAACCACCTCCGACGG+CGG - chr4_3:55331914-55331933 None:intergenic 60.0%
GCCGCGTCGCTTACTCTTAC+TGG + chr4_3:55331958-55331977 Msa0648810:CDS 60.0%
TTGCTCAGCTCAGTAGCCGG+TGG + chr4_3:55331989-55332008 Msa0648810:CDS 60.0%
GGTTCACCTGGTTCCGCCGT+CGG + chr4_3:55331898-55331917 Msa0648810:CDS 65.0%
GGTGCCTCTTCCAGCCAGAG+TGG + chr4_3:55333807-55333826 Msa0648810:CDS 65.0%
TCACCTGGTTCCGCCGTCGG+AGG + chr4_3:55331901-55331920 Msa0648810:CDS 70.0%
CCACCTCCGACGGCGGAACC+AGG - chr4_3:55331907-55331926 None:intergenic 75.0%
CCTGGTTCCGCCGTCGGAGG+TGG + chr4_3:55331904-55331923 Msa0648810:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 55331544 55334499 55331544 ID=Msa0648810;Name=Msa0648810
chr4_3 mRNA 55331544 55334499 55331544 ID=Msa0648810-mRNA-1;Parent=Msa0648810;Name=Msa0648810-mRNA-1;_AED=0.07;_eAED=0.07;_QI=261|1|1|1|0.6|0.5|6|528|219
chr4_3 exon 55331544 55332047 55331544 ID=Msa0648810-mRNA-1:exon:14123;Parent=Msa0648810-mRNA-1
chr4_3 exon 55332312 55332467 55332312 ID=Msa0648810-mRNA-1:exon:14124;Parent=Msa0648810-mRNA-1
chr4_3 exon 55332574 55332706 55332574 ID=Msa0648810-mRNA-1:exon:14125;Parent=Msa0648810-mRNA-1
chr4_3 exon 55332793 55332832 55332793 ID=Msa0648810-mRNA-1:exon:14126;Parent=Msa0648810-mRNA-1
chr4_3 exon 55333804 55333944 55333804 ID=Msa0648810-mRNA-1:exon:14127;Parent=Msa0648810-mRNA-1
chr4_3 exon 55334025 55334499 55334025 ID=Msa0648810-mRNA-1:exon:14128;Parent=Msa0648810-mRNA-1
chr4_3 five_prime_UTR 55331544 55331804 55331544 ID=Msa0648810-mRNA-1:five_prime_utr;Parent=Msa0648810-mRNA-1
chr4_3 CDS 55331805 55332047 55331805 ID=Msa0648810-mRNA-1:cds;Parent=Msa0648810-mRNA-1
chr4_3 CDS 55332312 55332467 55332312 ID=Msa0648810-mRNA-1:cds;Parent=Msa0648810-mRNA-1
chr4_3 CDS 55332574 55332706 55332574 ID=Msa0648810-mRNA-1:cds;Parent=Msa0648810-mRNA-1
chr4_3 CDS 55332793 55332832 55332793 ID=Msa0648810-mRNA-1:cds;Parent=Msa0648810-mRNA-1
chr4_3 CDS 55333804 55333891 55333804 ID=Msa0648810-mRNA-1:cds;Parent=Msa0648810-mRNA-1
chr4_3 three_prime_UTR 55333892 55333944 55333892 ID=Msa0648810-mRNA-1:three_prime_utr;Parent=Msa0648810-mRNA-1
chr4_3 three_prime_UTR 55334025 55334499 55334025 ID=Msa0648810-mRNA-1:three_prime_utr;Parent=Msa0648810-mRNA-1
Gene Sequence

>Msa0648810

ATGGACGCGATTGGATTTGGGAATGGATTTTTCGGGTTTTGGAAATGGGACCCGAAACGAGATTCTCAACGGCGTCGGATTCGTTCAAATTCGGGTTCACCTGGTTCCGCCGTCGGAGGTGGTTATCAGTTTCCGGTGAAGCAGGCGTTAACTGCCGCGTCGCTTACTCTTACTGGTGACACGATTGCTCAGCTCAGTAGCCGGTGGAACAAAGCTAAAGAGAGTGGTGAAAATGCCTCTCAGGATGTATTGGCGAAGCTTCTTTCAGAACACGATTTGCTACGTGCTCTGCGAATGACTTCCTATGGATTCCTTTTCTATGGTCCTGGTTCTTTTGCCTGGTACCAGTTGCTTGACCATTGTCTCCCAAAGCCAAATGTCCAGAACCTAATGTTAAAGGTTTTACTAAACCAAATTGTGTTGGGTCCATGTGTCATTGCGGTTATCTTTGCATGGAACAATTTATGGCAACAAAAGCTTTCAGAGCTTCCGGAAAAATACAAAAGAGATGCTCTTCCCACTTTACTTTATGGTTTTAGATTCTGGATCCCTGTCAGTGTATTAAATTTCTGGGTGGTGCCTCTTCCAGCCAGAGTGGCTTTCATGTCAATGGGCTCAATATTTTGGAATTTTTACCTATCATCAACTATGAACAAGTAA

Protein sequence

>Msa0648810

MDAIGFGNGFFGFWKWDPKRDSQRRRIRSNSGSPGSAVGGGYQFPVKQALTAASLTLTGDTIAQLSSRWNKAKESGENASQDVLAKLLSEHDLLRALRMTSYGFLFYGPGSFAWYQLLDHCLPKPNVQNLMLKVLLNQIVLGPCVIAVIFAWNNLWQQKLSELPEKYKRDALPTLLYGFRFWIPVSVLNFWVVPLPARVAFMSMGSIFWNFYLSSTMNK*