Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640820 | XP_013455693.1 | 96.250 | 320 | 10 | 1 | 1 | 320 | 1 | 318 | 0.0 | 633 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640820 | sp|Q9FG13|CXE15_ARATH | 48.589 | 319 | 155 | 5 | 5 | 317 | 10 | 325 | 3.05e-101 | 303 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640820 | A0A072UIY5 | 96.250 | 320 | 10 | 1 | 1 | 320 | 1 | 318 | 0.0 | 633 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0640820 | Msa0653450 | 0.811872 | 5.632144e-51 | -8.615850e-47 |
| Msa0640820 | Msa1092310 | 0.802156 | 6.411894e-49 | -8.615850e-47 |
| Msa0640820 | Msa1121040 | 0.804354 | 2.248806e-49 | -8.615850e-47 |
| Msa0640820 | Msa1129330 | 0.835093 | 2.051165e-56 | -8.615850e-47 |
| Msa0640820 | Msa1150280 | 0.801751 | 7.767333e-49 | -8.615850e-47 |
| Msa0640820 | Msa1341840 | 0.814426 | 1.549783e-51 | -8.615850e-47 |
| Msa0640820 | Msa1461370 | 0.824883 | 6.339147e-54 | -8.615850e-47 |
| Msa0187540 | Msa0640820 | 0.822293 | 2.560294e-53 | -8.615850e-47 |
| Msa0481630 | Msa0640820 | 0.827160 | 1.823513e-54 | -8.615850e-47 |
| Msa0544490 | Msa0640820 | 0.886073 | 4.696246e-72 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640820 | MtrunA17_Chr4g0025291 | 96.250 | 320 | 10 | 1 | 1 | 320 | 1 | 318 | 0.0 | 633 |
| Msa0640820 | MtrunA17_Chr7g0268091 | 57.188 | 313 | 131 | 3 | 5 | 317 | 7 | 316 | 2.01e-125 | 362 |
| Msa0640820 | MtrunA17_Chr3g0081521 | 36.047 | 344 | 191 | 8 | 2 | 320 | 4 | 343 | 8.96e-64 | 205 |
| Msa0640820 | MtrunA17_Chr1g0210121 | 37.615 | 327 | 182 | 10 | 4 | 317 | 25 | 342 | 1.22e-63 | 205 |
| Msa0640820 | MtrunA17_Chr7g0214851 | 34.862 | 327 | 193 | 9 | 11 | 319 | 27 | 351 | 2.57e-59 | 194 |
| Msa0640820 | MtrunA17_Chr7g0235741 | 34.356 | 326 | 191 | 8 | 2 | 317 | 37 | 349 | 1.21e-53 | 179 |
| Msa0640820 | MtrunA17_Chr4g0045181 | 33.129 | 326 | 195 | 8 | 2 | 317 | 5 | 317 | 8.35e-52 | 173 |
| Msa0640820 | MtrunA17_Chr3g0133701 | 33.974 | 312 | 191 | 7 | 13 | 319 | 15 | 316 | 2.50e-51 | 172 |
| Msa0640820 | MtrunA17_Chr1g0205871 | 33.642 | 324 | 201 | 7 | 2 | 317 | 5 | 322 | 8.91e-50 | 168 |
| Msa0640820 | MtrunA17_Chr4g0045131 | 33.333 | 333 | 188 | 9 | 2 | 318 | 41 | 355 | 3.41e-49 | 167 |
| Msa0640820 | MtrunA17_Chr1g0149271 | 35.802 | 324 | 184 | 12 | 4 | 319 | 2 | 309 | 5.14e-49 | 166 |
| Msa0640820 | MtrunA17_Chr1g0204211 | 37.500 | 264 | 154 | 4 | 40 | 300 | 68 | 323 | 1.29e-48 | 166 |
| Msa0640820 | MtrunA17_Chr1g0191301 | 34.277 | 318 | 176 | 6 | 18 | 317 | 38 | 340 | 1.76e-47 | 162 |
| Msa0640820 | MtrunA17_Chr6g0477231 | 31.776 | 321 | 189 | 6 | 17 | 319 | 29 | 337 | 5.48e-46 | 159 |
| Msa0640820 | MtrunA17_Chr8g0351201 | 34.641 | 306 | 191 | 6 | 18 | 319 | 26 | 326 | 1.13e-45 | 157 |
| Msa0640820 | MtrunA17_Chr4g0045121 | 35.256 | 312 | 188 | 7 | 12 | 319 | 18 | 319 | 2.29e-45 | 156 |
| Msa0640820 | MtrunA17_Chr6g0477251 | 33.651 | 315 | 185 | 5 | 18 | 319 | 586 | 889 | 2.64e-44 | 161 |
| Msa0640820 | MtrunA17_Chr6g0477251 | 32.595 | 316 | 189 | 5 | 18 | 320 | 32 | 336 | 4.72e-44 | 160 |
| Msa0640820 | MtrunA17_Chr5g0394241 | 33.333 | 327 | 203 | 9 | 3 | 319 | 7 | 328 | 2.00e-43 | 152 |
| Msa0640820 | MtrunA17_Chr1g0196311 | 35.714 | 266 | 153 | 5 | 54 | 318 | 109 | 357 | 2.63e-43 | 152 |
| Msa0640820 | MtrunA17_Chr3g0095711 | 31.818 | 330 | 206 | 9 | 1 | 319 | 49 | 370 | 4.58e-43 | 152 |
| Msa0640820 | MtrunA17_Chr8g0351211 | 33.333 | 309 | 193 | 6 | 17 | 317 | 13 | 316 | 8.77e-43 | 150 |
| Msa0640820 | MtrunA17_Chr1g0204201 | 33.333 | 288 | 175 | 6 | 38 | 317 | 47 | 325 | 9.63e-43 | 150 |
| Msa0640820 | MtrunA17_Chr6g0474411 | 33.333 | 285 | 176 | 6 | 38 | 317 | 51 | 326 | 1.10e-42 | 150 |
| Msa0640820 | MtrunA17_Chr6g0474631 | 33.660 | 306 | 172 | 10 | 15 | 304 | 23 | 313 | 1.10e-42 | 150 |
| Msa0640820 | MtrunA17_Chr7g0259161 | 33.746 | 323 | 177 | 9 | 18 | 317 | 38 | 346 | 1.85e-42 | 150 |
| Msa0640820 | MtrunA17_Chr6g0477161 | 33.333 | 285 | 170 | 4 | 42 | 317 | 61 | 334 | 7.53e-42 | 154 |
| Msa0640820 | MtrunA17_Chr6g0477161 | 32.180 | 289 | 173 | 5 | 42 | 319 | 409 | 685 | 2.13e-39 | 147 |
| Msa0640820 | MtrunA17_Chr5g0394211 | 31.804 | 327 | 204 | 11 | 2 | 317 | 40 | 358 | 1.47e-41 | 147 |
| Msa0640820 | MtrunA17_Chr6g0474491 | 32.492 | 317 | 192 | 9 | 12 | 317 | 19 | 324 | 4.85e-41 | 145 |
| Msa0640820 | MtrunA17_Chr6g0477271 | 32.616 | 279 | 175 | 4 | 43 | 319 | 86 | 353 | 5.71e-41 | 146 |
| Msa0640820 | MtrunA17_Chr8g0353951 | 29.907 | 321 | 213 | 7 | 5 | 319 | 16 | 330 | 1.34e-40 | 144 |
| Msa0640820 | MtrunA17_Chr5g0394251 | 32.424 | 330 | 204 | 10 | 2 | 319 | 10 | 332 | 1.66e-40 | 144 |
| Msa0640820 | MtrunA17_Chr6g0474471 | 31.741 | 293 | 178 | 8 | 39 | 320 | 47 | 328 | 2.75e-40 | 143 |
| Msa0640820 | MtrunA17_Chr4g0045191 | 30.435 | 322 | 186 | 7 | 2 | 317 | 15 | 304 | 3.16e-39 | 140 |
| Msa0640820 | MtrunA17_Chr6g0474541 | 36.111 | 216 | 128 | 4 | 39 | 251 | 75 | 283 | 2.50e-37 | 136 |
| Msa0640820 | MtrunA17_Chr8g0351171 | 29.371 | 286 | 188 | 6 | 38 | 317 | 40 | 317 | 1.02e-36 | 134 |
| Msa0640820 | MtrunA17_Chr7g0228721 | 32.270 | 282 | 153 | 4 | 55 | 300 | 152 | 431 | 3.73e-34 | 130 |
| Msa0640820 | MtrunA17_Chr7g0233871 | 29.321 | 324 | 218 | 6 | 2 | 319 | 9 | 327 | 5.38e-33 | 124 |
| Msa0640820 | MtrunA17_Chr6g0458881 | 31.203 | 266 | 147 | 4 | 66 | 300 | 158 | 418 | 7.97e-33 | 126 |
| Msa0640820 | MtrunA17_Chr1g0205791 | 31.804 | 327 | 199 | 9 | 3 | 320 | 8 | 319 | 1.74e-32 | 123 |
| Msa0640820 | MtrunA17_Chr1g0205781 | 28.834 | 326 | 214 | 6 | 2 | 319 | 9 | 324 | 1.97e-30 | 117 |
| Msa0640820 | MtrunA17_Chr6g0477241 | 26.829 | 287 | 143 | 5 | 42 | 319 | 71 | 299 | 1.28e-27 | 109 |
| Msa0640820 | MtrunA17_Chr6g0474611 | 29.114 | 158 | 102 | 5 | 155 | 304 | 4 | 159 | 2.68e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640820 | AT5G06570.1 | 48.589 | 319 | 155 | 5 | 5 | 317 | 10 | 325 | 3.11e-102 | 303 |
| Msa0640820 | AT5G06570.2 | 48.589 | 319 | 155 | 5 | 5 | 317 | 10 | 325 | 3.11e-102 | 303 |
| Msa0640820 | AT5G06570.3 | 48.589 | 319 | 155 | 5 | 5 | 317 | 25 | 340 | 3.31e-102 | 303 |
| Msa0640820 | AT5G06570.4 | 48.589 | 319 | 155 | 5 | 5 | 317 | 25 | 340 | 3.31e-102 | 303 |
| Msa0640820 | AT5G16080.1 | 34.365 | 323 | 195 | 8 | 5 | 318 | 28 | 342 | 4.62e-57 | 188 |
| Msa0640820 | AT1G68620.1 | 35.494 | 324 | 187 | 10 | 5 | 320 | 23 | 332 | 8.13e-52 | 174 |
| Msa0640820 | AT5G27320.1 | 36.593 | 317 | 169 | 8 | 18 | 317 | 38 | 339 | 1.39e-51 | 174 |
| Msa0640820 | AT5G62180.1 | 36.624 | 314 | 174 | 9 | 18 | 317 | 21 | 323 | 2.48e-50 | 170 |
| Msa0640820 | AT3G63010.1 | 34.472 | 322 | 173 | 7 | 18 | 318 | 38 | 342 | 2.33e-47 | 163 |
| Msa0640820 | AT3G05120.1 | 32.915 | 319 | 180 | 6 | 18 | 317 | 38 | 341 | 9.54e-47 | 161 |
| Msa0640820 | AT1G47480.1 | 30.000 | 310 | 200 | 7 | 13 | 319 | 16 | 311 | 3.74e-45 | 156 |
| Msa0640820 | AT2G45600.1 | 34.783 | 276 | 163 | 7 | 17 | 285 | 20 | 285 | 5.40e-45 | 156 |
| Msa0640820 | AT5G23530.1 | 33.225 | 307 | 187 | 6 | 18 | 319 | 35 | 328 | 1.13e-42 | 150 |
| Msa0640820 | AT2G45610.1 | 32.028 | 281 | 182 | 4 | 42 | 318 | 49 | 324 | 6.64e-42 | 148 |
| Msa0640820 | AT3G48700.1 | 31.751 | 337 | 200 | 12 | 1 | 318 | 1 | 326 | 1.35e-39 | 142 |
| Msa0640820 | AT3G48690.1 | 32.012 | 328 | 206 | 9 | 1 | 318 | 1 | 321 | 1.73e-39 | 142 |
| Msa0640820 | AT1G19190.1 | 27.937 | 315 | 207 | 8 | 13 | 319 | 13 | 315 | 1.69e-36 | 134 |
| Msa0640820 | AT3G27320.2 | 33.692 | 279 | 150 | 6 | 55 | 300 | 120 | 396 | 5.06e-36 | 135 |
| Msa0640820 | AT3G27320.1 | 33.692 | 279 | 150 | 6 | 55 | 300 | 152 | 428 | 8.34e-36 | 134 |
| Msa0640820 | AT2G03550.1 | 28.485 | 330 | 207 | 10 | 1 | 319 | 1 | 312 | 5.56e-34 | 127 |
| Msa0640820 | AT5G14310.1 | 29.866 | 298 | 172 | 4 | 57 | 317 | 140 | 437 | 9.56e-34 | 129 |
| Msa0640820 | AT1G49650.1 | 30.351 | 313 | 200 | 10 | 13 | 318 | 69 | 370 | 3.18e-31 | 120 |
| Msa0640820 | AT1G49640.1 | 30.662 | 287 | 177 | 9 | 39 | 317 | 41 | 313 | 4.88e-30 | 116 |
| Msa0640820 | AT1G49660.1 | 29.693 | 293 | 174 | 10 | 1 | 278 | 1 | 276 | 5.11e-29 | 114 |
Find 71 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCAAGGCTCTTACTTCT+TGG | 0.253436 | 4_3:+40204406 | None:intergenic |
| AGTTGGCACCGGTTCGGGTT+AGG | 0.267807 | 4_3:-40205013 | Msa0640820:CDS |
| TCTCCAACCACCACAAGAAT+TGG | 0.284897 | 4_3:+40204370 | None:intergenic |
| CATAATTTGGCGGTTTGGCT+TGG | 0.305580 | 4_3:-40205050 | Msa0640820:CDS |
| CAATTCATAGAGAAATATTA+AGG | 0.314893 | 4_3:-40204190 | None:intergenic |
| GTTGGCACCGGTTCGGGTTA+GGG | 0.314906 | 4_3:-40205012 | Msa0640820:CDS |
| CTCTTACTTCTTGGTCCAAA+TGG | 0.330488 | 4_3:+40204415 | None:intergenic |
| AAAATGATTTGCTTAAAGAT+AGG | 0.343018 | 4_3:-40204348 | Msa0640820:CDS |
| GGTTGAGTTGGCACCGGTTC+GGG | 0.345598 | 4_3:-40205018 | Msa0640820:CDS |
| TGGTAATATAGCTCATAATT+TGG | 0.349968 | 4_3:-40205063 | Msa0640820:CDS |
| TTGGCGGTTTGGCTTGGGTT+TGG | 0.352211 | 4_3:-40205044 | Msa0640820:CDS |
| TAGCTCATAATTTGGCGGTT+TGG | 0.353593 | 4_3:-40205055 | Msa0640820:CDS |
| ATAATTTGGCGGTTTGGCTT+GGG | 0.368476 | 4_3:-40205049 | Msa0640820:CDS |
| CATCCACTTGTGAATCCATT+TGG | 0.383792 | 4_3:-40204430 | Msa0640820:CDS |
| TGAACTGTGATGTTGAAGGC+TGG | 0.384844 | 4_3:+40205473 | None:intergenic |
| CGGTTGAGTTGGCACCGGTT+CGG | 0.388326 | 4_3:-40205019 | Msa0640820:CDS |
| ATCGACTTGCACCGGAGAAT+CGG | 0.395410 | 4_3:-40205226 | Msa0640820:CDS |
| CTCCAACCACCACAAGAATT+GGG | 0.412421 | 4_3:+40204371 | None:intergenic |
| TTTATTTCGGGTGACTCGGC+TGG | 0.436373 | 4_3:-40205086 | Msa0640820:CDS |
| CTTCCATGTGCTATTGAAGA+TGG | 0.442034 | 4_3:-40205203 | Msa0640820:CDS |
| TTGGCACCGGTTCGGGTTAG+GGG | 0.442158 | 4_3:-40205011 | Msa0640820:CDS |
| ATAGAGTATGTAGAATTTGA+AGG | 0.444698 | 4_3:-40204283 | Msa0640820:CDS |
| GGGCAGAGGATTATGCAAAA+AGG | 0.446914 | 4_3:-40204327 | Msa0640820:CDS |
| CGGTCCTTCAGCTTCTGACT+TGG | 0.447400 | 4_3:+40204947 | None:intergenic |
| AGCTTCTGACTTGGTCCTCA+CGG | 0.456270 | 4_3:+40204956 | None:intergenic |
| ACATAACCCCTAACCCGAAC+CGG | 0.456317 | 4_3:+40205005 | None:intergenic |
| TGGGTTTAACGTGCGAACTA+TGG | 0.478396 | 4_3:+40205493 | None:intergenic |
| TCCGGTGCAAGTCGATAGTC+AGG | 0.479375 | 4_3:+40205233 | None:intergenic |
| GAACTGTGATGTTGAAGGCT+GGG | 0.480754 | 4_3:+40205474 | None:intergenic |
| AATTCATAGAGAAATATTAA+GGG | 0.484386 | 4_3:-40204189 | None:intergenic |
| AAATGATTTGCTTAAAGATA+GGG | 0.489878 | 4_3:-40204347 | Msa0640820:CDS |
| CACGGTGGCGGCTTCTGCAT+CGG | 0.491547 | 4_3:-40205329 | Msa0640820:CDS |
| ATGAGTTAGCTGGCTTATAG+AGG | 0.492426 | 4_3:+40205387 | None:intergenic |
| TGGAGACTTTCTATACCCAT+TGG | 0.492630 | 4_3:-40204466 | Msa0640820:CDS |
| TGGGTTTGGATCGGTTGAGT+TGG | 0.494227 | 4_3:-40205030 | Msa0640820:CDS |
| TCAACTTGGAACTTATTGAC+AGG | 0.502436 | 4_3:-40204911 | Msa0640820:intron |
| GGTTTGGCTTGGGTTTGGAT+CGG | 0.507097 | 4_3:-40205039 | Msa0640820:CDS |
| GTCTTGAACTGTGATGTTGA+AGG | 0.511456 | 4_3:+40205469 | None:intergenic |
| ATGGTTTCATGACTGTTAAG+TGG | 0.512636 | 4_3:-40205184 | Msa0640820:CDS |
| CCGTGAATGTAGTAAAAGAT+TGG | 0.516981 | 4_3:+40205347 | None:intergenic |
| TCTGCATCGGCTCACGAACA+TGG | 0.517704 | 4_3:-40205316 | Msa0640820:CDS |
| GACCCAATTCTTGTGGTGGT+TGG | 0.518707 | 4_3:-40204373 | Msa0640820:CDS |
| GCACATGGAAGCCGATTCTC+CGG | 0.522531 | 4_3:+40205215 | None:intergenic |
| ATGATCAGTATTCTCTCCAA+TGG | 0.526794 | 4_3:+40204450 | None:intergenic |
| TGATCAGTATTCTCTCCAAT+GGG | 0.544757 | 4_3:+40204451 | None:intergenic |
| CAAGTCAGAAGCTGAAGGAC+CGG | 0.553703 | 4_3:-40204946 | Msa0640820:CDS |
| GAATTTGAAGGACAGCAACA+TGG | 0.561513 | 4_3:-40204271 | Msa0640820:CDS |
| GTGAGAATGAGATGGATCCT+TGG | 0.562064 | 4_3:-40205139 | Msa0640820:CDS |
| AAGTTGAGAAAAGCATCATC+CGG | 0.562536 | 4_3:+40204927 | None:intergenic |
| TGGATCGGTTGAGTTGGCAC+CGG | 0.564253 | 4_3:-40205024 | Msa0640820:CDS |
| GTTCTTCATGTCTATAACGA+CGG | 0.568020 | 4_3:-40205518 | Msa0640820:CDS |
| ATTTCGGGTGACTCGGCTGG+TGG | 0.569148 | 4_3:-40205083 | Msa0640820:CDS |
| TAATATAGCTCATAATTTGG+CGG | 0.569400 | 4_3:-40205060 | Msa0640820:CDS |
| TCTTGACCCAATTCTTGTGG+TGG | 0.585357 | 4_3:-40204377 | Msa0640820:CDS |
| ACCTGACTATCGACTTGCAC+CGG | 0.588313 | 4_3:-40205234 | Msa0640820:CDS |
| TAGCTGGCTTATAGAGGCGA+AGG | 0.596667 | 4_3:+40205393 | None:intergenic |
| TTTGCTTAAAGATAGGGCAG+AGG | 0.596874 | 4_3:-40204341 | Msa0640820:CDS |
| ACCATCAAAAGAGTTGATGT+TGG | 0.606485 | 4_3:-40204221 | Msa0640820:CDS |
| GGTCAAGATCAATTTCCTCA+AGG | 0.607533 | 4_3:+40204392 | None:intergenic |
| CCCGGTTAAAATCAGCCACA+TGG | 0.609681 | 4_3:+40205111 | None:intergenic |
| TGATCTTGACCCAATTCTTG+TGG | 0.614564 | 4_3:-40204380 | Msa0640820:CDS |
| AATTTGAAGGACAGCAACAT+GGG | 0.616359 | 4_3:-40204270 | Msa0640820:CDS |
| TTTGAAGAGTGAGAATGAGA+TGG | 0.629316 | 4_3:-40205147 | Msa0640820:CDS |
| AAACCATCTTCAATAGCACA+TGG | 0.641464 | 4_3:+40205200 | None:intergenic |
| AGGACCAAGTCAGAAGCTGA+AGG | 0.644457 | 4_3:-40204951 | Msa0640820:CDS |
| ACTATAGTTGACGAATGTCG+TGG | 0.650039 | 4_3:-40205542 | Msa0640820:CDS |
| GGTCCAAATGGATTCACAAG+TGG | 0.650243 | 4_3:+40204427 | None:intergenic |
| AACATCACAGTTCAAGACAA+CGG | 0.659552 | 4_3:-40205464 | Msa0640820:CDS |
| TCAGCCACATGGCTCAACCA+AGG | 0.660011 | 4_3:+40205122 | None:intergenic |
| GGATCCTTGGTTGAGCCATG+TGG | 0.675420 | 4_3:-40205126 | Msa0640820:CDS |
| ACCAAGAAGTAAGAGCCTTG+AGG | 0.706738 | 4_3:-40204407 | Msa0640820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAAAAATTAAATCATTAT+CGG | + | chr4_3:40205073-40205092 | None:intergenic | 10.0% |
| !! | TCAAAAAATTAAATCATTAT+CGG | + | chr4_3:40205073-40205092 | None:intergenic | 10.0% |
| !!! | TATAAAAAGTGTCAAAATTA+TGG | - | chr4_3:40205165-40205184 | Msa0640820:CDS | 15.0% |
| !!! | TATAAAAAGTGTCAAAATTA+TGG | - | chr4_3:40205165-40205184 | Msa0640820:CDS | 15.0% |
| !! | CTTGCATAATGTAAAATATT+TGG | + | chr4_3:40204893-40204912 | None:intergenic | 20.0% |
| !! | AGTATTTATTGCTTATTGAA+AGG | - | chr4_3:40205217-40205236 | Msa0640820:CDS | 20.0% |
| !!! | AAAATGATTTGCTTAAAGAT+AGG | - | chr4_3:40205395-40205414 | Msa0640820:CDS | 20.0% |
| !!! | AAATGATTTGCTTAAAGATA+GGG | - | chr4_3:40205396-40205415 | Msa0640820:CDS | 20.0% |
| !! | CTTGCATAATGTAAAATATT+TGG | + | chr4_3:40204893-40204912 | None:intergenic | 20.0% |
| !! | AGTATTTATTGCTTATTGAA+AGG | - | chr4_3:40205217-40205236 | Msa0640820:CDS | 20.0% |
| !!! | AAAATGATTTGCTTAAAGAT+AGG | - | chr4_3:40205395-40205414 | Msa0640820:CDS | 20.0% |
| !!! | AAATGATTTGCTTAAAGATA+GGG | - | chr4_3:40205396-40205415 | Msa0640820:CDS | 20.0% |
| !!! | TTTTAACCGGGTTTTTATTT+CGG | - | chr4_3:40204644-40204663 | Msa0640820:intron | 25.0% |
| ! | TGGTAATATAGCTCATAATT+TGG | - | chr4_3:40204680-40204699 | Msa0640820:intron | 25.0% |
| ! | TAATATAGCTCATAATTTGG+CGG | - | chr4_3:40204683-40204702 | Msa0640820:intron | 25.0% |
| ! | TTGTACCTTTAATATTGAAC+AGG | - | chr4_3:40205251-40205270 | Msa0640820:CDS | 25.0% |
| ! | CAATACCTGTTCAATATTAA+AGG | + | chr4_3:40205259-40205278 | None:intergenic | 25.0% |
| ! | CTTTAATATTGAACAGGTAT+TGG | - | chr4_3:40205257-40205276 | Msa0640820:CDS | 25.0% |
| ! | ATAGAGTATGTAGAATTTGA+AGG | - | chr4_3:40205460-40205479 | Msa0640820:CDS | 25.0% |
| !!! | TTTTAACCGGGTTTTTATTT+CGG | - | chr4_3:40204644-40204663 | Msa0640820:intron | 25.0% |
| ! | TGGTAATATAGCTCATAATT+TGG | - | chr4_3:40204680-40204699 | Msa0640820:intron | 25.0% |
| ! | TAATATAGCTCATAATTTGG+CGG | - | chr4_3:40204683-40204702 | Msa0640820:intron | 25.0% |
| ! | TTGTACCTTTAATATTGAAC+AGG | - | chr4_3:40205251-40205270 | Msa0640820:CDS | 25.0% |
| ! | CAATACCTGTTCAATATTAA+AGG | + | chr4_3:40205259-40205278 | None:intergenic | 25.0% |
| ! | CTTTAATATTGAACAGGTAT+TGG | - | chr4_3:40205257-40205276 | Msa0640820:CDS | 25.0% |
| ! | ATAGAGTATGTAGAATTTGA+AGG | - | chr4_3:40205460-40205479 | Msa0640820:CDS | 25.0% |
| !! | GTAAAAGATTGGTAGCTTTT+TGG | + | chr4_3:40204388-40204407 | None:intergenic | 30.0% |
| ! | CCAATCTTTTACTACATTCA+CGG | - | chr4_3:40204396-40204415 | Msa0640820:CDS | 30.0% |
| !! | TTTAACCGGGTTTTTATTTC+GGG | - | chr4_3:40204645-40204664 | Msa0640820:intron | 30.0% |
| TGAGAAAAGAGTTACAAACT+CGG | - | chr4_3:40204931-40204950 | Msa0640820:CDS | 30.0% | |
| AATTAGACGTAATCATGTGT+CGG | - | chr4_3:40205003-40205022 | Msa0640820:CDS | 30.0% | |
| ATGCAAAAAGGCTTAAGAAT+TGG | - | chr4_3:40205428-40205447 | Msa0640820:CDS | 30.0% | |
| TGCAAAAAGGCTTAAGAATT+GGG | - | chr4_3:40205429-40205448 | Msa0640820:CDS | 30.0% | |
| !!! | TCTTTTGATGGTTCTGAATT+TGG | + | chr4_3:40205514-40205533 | None:intergenic | 30.0% |
| !! | GTAAAAGATTGGTAGCTTTT+TGG | + | chr4_3:40204388-40204407 | None:intergenic | 30.0% |
| ! | CCAATCTTTTACTACATTCA+CGG | - | chr4_3:40204396-40204415 | Msa0640820:CDS | 30.0% |
| !! | TTTAACCGGGTTTTTATTTC+GGG | - | chr4_3:40204645-40204664 | Msa0640820:intron | 30.0% |
| TGAGAAAAGAGTTACAAACT+CGG | - | chr4_3:40204931-40204950 | Msa0640820:CDS | 30.0% | |
| AATTAGACGTAATCATGTGT+CGG | - | chr4_3:40205003-40205022 | Msa0640820:CDS | 30.0% | |
| ATGCAAAAAGGCTTAAGAAT+TGG | - | chr4_3:40205428-40205447 | Msa0640820:CDS | 30.0% | |
| TGCAAAAAGGCTTAAGAATT+GGG | - | chr4_3:40205429-40205448 | Msa0640820:CDS | 30.0% | |
| !!! | TCTTTTGATGGTTCTGAATT+TGG | + | chr4_3:40205514-40205533 | None:intergenic | 30.0% |
| GTTCTTCATGTCTATAACGA+CGG | - | chr4_3:40204225-40204244 | Msa0640820:CDS | 35.0% | |
| AACATCACAGTTCAAGACAA+CGG | - | chr4_3:40204279-40204298 | Msa0640820:CDS | 35.0% | |
| !! | AAGATTGGTAGCTTTTTGGA+GGG | + | chr4_3:40204384-40204403 | None:intergenic | 35.0% |
| !! | AAAGATTGGTAGCTTTTTGG+AGG | + | chr4_3:40204385-40204404 | None:intergenic | 35.0% |
| CCGTGAATGTAGTAAAAGAT+TGG | + | chr4_3:40204399-40204418 | None:intergenic | 35.0% | |
| ! | ATCTTTTACTACATTCACGG+TGG | - | chr4_3:40204399-40204418 | Msa0640820:CDS | 35.0% |
| !!! | AAGCAGTAGTTTTGACAGTT+TGG | + | chr4_3:40204453-40204472 | None:intergenic | 35.0% |
| AAACCATCTTCAATAGCACA+TGG | + | chr4_3:40204546-40204565 | None:intergenic | 35.0% | |
| ATGGTTTCATGACTGTTAAG+TGG | - | chr4_3:40204559-40204578 | Msa0640820:intron | 35.0% | |
| TTTGAAGAGTGAGAATGAGA+TGG | - | chr4_3:40204596-40204615 | Msa0640820:intron | 35.0% | |
| !! | AAGTTGAGAAAAGCATCATC+CGG | + | chr4_3:40204819-40204838 | None:intergenic | 35.0% |
| TCAACTTGGAACTTATTGAC+AGG | - | chr4_3:40204832-40204851 | Msa0640820:intron | 35.0% | |
| TTGGTATGCAAAGTGAAGAT+AGG | + | chr4_3:40204874-40204893 | None:intergenic | 35.0% | |
| AAGAGTTACAAACTCGGAAA+CGG | - | chr4_3:40204937-40204956 | Msa0640820:CDS | 35.0% | |
| TGATCAGTATTCTCTCCAAT+GGG | + | chr4_3:40205295-40205314 | None:intergenic | 35.0% | |
| ATGATCAGTATTCTCTCCAA+TGG | + | chr4_3:40205296-40205315 | None:intergenic | 35.0% | |
| GCAAAAAGGCTTAAGAATTG+GGG | - | chr4_3:40205430-40205449 | Msa0640820:CDS | 35.0% | |
| AATTTGAAGGACAGCAACAT+GGG | - | chr4_3:40205473-40205492 | Msa0640820:CDS | 35.0% | |
| !! | ACCATCAAAAGAGTTGATGT+TGG | - | chr4_3:40205522-40205541 | Msa0640820:CDS | 35.0% |
| ! | ACCAACATCAACTCTTTTGA+TGG | + | chr4_3:40205526-40205545 | None:intergenic | 35.0% |
| GTTCTTCATGTCTATAACGA+CGG | - | chr4_3:40204225-40204244 | Msa0640820:CDS | 35.0% | |
| AACATCACAGTTCAAGACAA+CGG | - | chr4_3:40204279-40204298 | Msa0640820:CDS | 35.0% | |
| !! | AAGATTGGTAGCTTTTTGGA+GGG | + | chr4_3:40204384-40204403 | None:intergenic | 35.0% |
| !! | AAAGATTGGTAGCTTTTTGG+AGG | + | chr4_3:40204385-40204404 | None:intergenic | 35.0% |
| CCGTGAATGTAGTAAAAGAT+TGG | + | chr4_3:40204399-40204418 | None:intergenic | 35.0% | |
| ! | ATCTTTTACTACATTCACGG+TGG | - | chr4_3:40204399-40204418 | Msa0640820:CDS | 35.0% |
| !!! | AAGCAGTAGTTTTGACAGTT+TGG | + | chr4_3:40204453-40204472 | None:intergenic | 35.0% |
| AAACCATCTTCAATAGCACA+TGG | + | chr4_3:40204546-40204565 | None:intergenic | 35.0% | |
| ATGGTTTCATGACTGTTAAG+TGG | - | chr4_3:40204559-40204578 | Msa0640820:intron | 35.0% | |
| TTTGAAGAGTGAGAATGAGA+TGG | - | chr4_3:40204596-40204615 | Msa0640820:intron | 35.0% | |
| !! | AAGTTGAGAAAAGCATCATC+CGG | + | chr4_3:40204819-40204838 | None:intergenic | 35.0% |
| TCAACTTGGAACTTATTGAC+AGG | - | chr4_3:40204832-40204851 | Msa0640820:intron | 35.0% | |
| TTGGTATGCAAAGTGAAGAT+AGG | + | chr4_3:40204874-40204893 | None:intergenic | 35.0% | |
| AAGAGTTACAAACTCGGAAA+CGG | - | chr4_3:40204937-40204956 | Msa0640820:CDS | 35.0% | |
| TGATCAGTATTCTCTCCAAT+GGG | + | chr4_3:40205295-40205314 | None:intergenic | 35.0% | |
| ATGATCAGTATTCTCTCCAA+TGG | + | chr4_3:40205296-40205315 | None:intergenic | 35.0% | |
| GCAAAAAGGCTTAAGAATTG+GGG | - | chr4_3:40205430-40205449 | Msa0640820:CDS | 35.0% | |
| AATTTGAAGGACAGCAACAT+GGG | - | chr4_3:40205473-40205492 | Msa0640820:CDS | 35.0% | |
| !! | ACCATCAAAAGAGTTGATGT+TGG | - | chr4_3:40205522-40205541 | Msa0640820:CDS | 35.0% |
| ! | ACCAACATCAACTCTTTTGA+TGG | + | chr4_3:40205526-40205545 | None:intergenic | 35.0% |
| ACTATAGTTGACGAATGTCG+TGG | - | chr4_3:40204201-40204220 | Msa0640820:CDS | 40.0% | |
| GTCTTGAACTGTGATGTTGA+AGG | + | chr4_3:40204277-40204296 | None:intergenic | 40.0% | |
| ! | AAGACAACGGCACTGTTTTA+TGG | - | chr4_3:40204292-40204311 | Msa0640820:CDS | 40.0% |
| ! | ATGAGTTAGCTGGCTTATAG+AGG | + | chr4_3:40204359-40204378 | None:intergenic | 40.0% |
| !! | AGATTGGTAGCTTTTTGGAG+GGG | + | chr4_3:40204383-40204402 | None:intergenic | 40.0% |
| ! | TTTTACTACATTCACGGTGG+CGG | - | chr4_3:40204402-40204421 | Msa0640820:CDS | 40.0% |
| ! | CTTCCATGTGCTATTGAAGA+TGG | - | chr4_3:40204540-40204559 | Msa0640820:intron | 40.0% |
| AGTCACCCGAAATAAAAACC+CGG | + | chr4_3:40204653-40204672 | None:intergenic | 40.0% | |
| !! | GGTTTTTATTTCGGGTGACT+CGG | - | chr4_3:40204653-40204672 | Msa0640820:intron | 40.0% |
| TAGCTCATAATTTGGCGGTT+TGG | - | chr4_3:40204688-40204707 | Msa0640820:intron | 40.0% | |
| ! | ATAATTTGGCGGTTTGGCTT+GGG | - | chr4_3:40204694-40204713 | Msa0640820:intron | 40.0% |
| ! | GGTTAGGGGTTATGTTTTGT+TGG | - | chr4_3:40204746-40204765 | Msa0640820:intron | 40.0% |
| !! | GTTTTGTTGGCACCGTTTTT+TGG | - | chr4_3:40204759-40204778 | Msa0640820:intron | 40.0% |
| ! | GGATGATGCTTTTCTCAACT+TGG | - | chr4_3:40204818-40204837 | Msa0640820:intron | 40.0% |
| TGGAGACTTTCTATACCCAT+TGG | - | chr4_3:40205277-40205296 | Msa0640820:CDS | 40.0% | |
| CATCCACTTGTGAATCCATT+TGG | - | chr4_3:40205313-40205332 | Msa0640820:CDS | 40.0% | |
| CTCTTACTTCTTGGTCCAAA+TGG | + | chr4_3:40205331-40205350 | None:intergenic | 40.0% | |
| GGTCAAGATCAATTTCCTCA+AGG | + | chr4_3:40205354-40205373 | None:intergenic | 40.0% | |
| TGATCTTGACCCAATTCTTG+TGG | - | chr4_3:40205363-40205382 | Msa0640820:CDS | 40.0% | |
| TTTGCTTAAAGATAGGGCAG+AGG | - | chr4_3:40205402-40205421 | Msa0640820:CDS | 40.0% | |
| GAATTTGAAGGACAGCAACA+TGG | - | chr4_3:40205472-40205491 | Msa0640820:CDS | 40.0% | |
| ACTATAGTTGACGAATGTCG+TGG | - | chr4_3:40204201-40204220 | Msa0640820:CDS | 40.0% | |
| GTCTTGAACTGTGATGTTGA+AGG | + | chr4_3:40204277-40204296 | None:intergenic | 40.0% | |
| ! | AAGACAACGGCACTGTTTTA+TGG | - | chr4_3:40204292-40204311 | Msa0640820:CDS | 40.0% |
| ! | ATGAGTTAGCTGGCTTATAG+AGG | + | chr4_3:40204359-40204378 | None:intergenic | 40.0% |
| !! | AGATTGGTAGCTTTTTGGAG+GGG | + | chr4_3:40204383-40204402 | None:intergenic | 40.0% |
| ! | TTTTACTACATTCACGGTGG+CGG | - | chr4_3:40204402-40204421 | Msa0640820:CDS | 40.0% |
| ! | CTTCCATGTGCTATTGAAGA+TGG | - | chr4_3:40204540-40204559 | Msa0640820:intron | 40.0% |
| AGTCACCCGAAATAAAAACC+CGG | + | chr4_3:40204653-40204672 | None:intergenic | 40.0% | |
| !! | GGTTTTTATTTCGGGTGACT+CGG | - | chr4_3:40204653-40204672 | Msa0640820:intron | 40.0% |
| TAGCTCATAATTTGGCGGTT+TGG | - | chr4_3:40204688-40204707 | Msa0640820:intron | 40.0% | |
| ! | ATAATTTGGCGGTTTGGCTT+GGG | - | chr4_3:40204694-40204713 | Msa0640820:intron | 40.0% |
| ! | GGTTAGGGGTTATGTTTTGT+TGG | - | chr4_3:40204746-40204765 | Msa0640820:intron | 40.0% |
| !! | GTTTTGTTGGCACCGTTTTT+TGG | - | chr4_3:40204759-40204778 | Msa0640820:intron | 40.0% |
| ! | GGATGATGCTTTTCTCAACT+TGG | - | chr4_3:40204818-40204837 | Msa0640820:intron | 40.0% |
| TGGAGACTTTCTATACCCAT+TGG | - | chr4_3:40205277-40205296 | Msa0640820:CDS | 40.0% | |
| CATCCACTTGTGAATCCATT+TGG | - | chr4_3:40205313-40205332 | Msa0640820:CDS | 40.0% | |
| CTCTTACTTCTTGGTCCAAA+TGG | + | chr4_3:40205331-40205350 | None:intergenic | 40.0% | |
| GGTCAAGATCAATTTCCTCA+AGG | + | chr4_3:40205354-40205373 | None:intergenic | 40.0% | |
| TGATCTTGACCCAATTCTTG+TGG | - | chr4_3:40205363-40205382 | Msa0640820:CDS | 40.0% | |
| TTTGCTTAAAGATAGGGCAG+AGG | - | chr4_3:40205402-40205421 | Msa0640820:CDS | 40.0% | |
| GAATTTGAAGGACAGCAACA+TGG | - | chr4_3:40205472-40205491 | Msa0640820:CDS | 40.0% | |
| TGGGTTTAACGTGCGAACTA+TGG | + | chr4_3:40204253-40204272 | None:intergenic | 45.0% | |
| GAACTGTGATGTTGAAGGCT+GGG | + | chr4_3:40204272-40204291 | None:intergenic | 45.0% | |
| TGAACTGTGATGTTGAAGGC+TGG | + | chr4_3:40204273-40204292 | None:intergenic | 45.0% | |
| !! | GATTGGTAGCTTTTTGGAGG+GGG | + | chr4_3:40204382-40204401 | None:intergenic | 45.0% |
| GTGAGAATGAGATGGATCCT+TGG | - | chr4_3:40204604-40204623 | Msa0640820:intron | 45.0% | |
| !! | GCCATGTGGCTGATTTTAAC+CGG | - | chr4_3:40204631-40204650 | Msa0640820:intron | 45.0% |
| !! | CCATGTGGCTGATTTTAACC+GGG | - | chr4_3:40204632-40204651 | Msa0640820:intron | 45.0% |
| ! | CATAATTTGGCGGTTTGGCT+TGG | - | chr4_3:40204693-40204712 | Msa0640820:intron | 45.0% |
| !!! | TTGTTGGCACCGTTTTTTGG+TGG | - | chr4_3:40204762-40204781 | Msa0640820:intron | 45.0% |
| CTCACGGTTCCACCAAAAAA+CGG | + | chr4_3:40204774-40204793 | None:intergenic | 45.0% | |
| ! | GGTCCAAATGGATTCACAAG+TGG | + | chr4_3:40205319-40205338 | None:intergenic | 45.0% |
| ACCAAGAAGTAAGAGCCTTG+AGG | - | chr4_3:40205336-40205355 | Msa0640820:CDS | 45.0% | |
| TCCTCAAGGCTCTTACTTCT+TGG | + | chr4_3:40205340-40205359 | None:intergenic | 45.0% | |
| TCTTGACCCAATTCTTGTGG+TGG | - | chr4_3:40205366-40205385 | Msa0640820:CDS | 45.0% | |
| CTCCAACCACCACAAGAATT+GGG | + | chr4_3:40205375-40205394 | None:intergenic | 45.0% | |
| TCTCCAACCACCACAAGAAT+TGG | + | chr4_3:40205376-40205395 | None:intergenic | 45.0% | |
| GGGCAGAGGATTATGCAAAA+AGG | - | chr4_3:40205416-40205435 | Msa0640820:CDS | 45.0% | |
| TGGGTTTAACGTGCGAACTA+TGG | + | chr4_3:40204253-40204272 | None:intergenic | 45.0% | |
| GAACTGTGATGTTGAAGGCT+GGG | + | chr4_3:40204272-40204291 | None:intergenic | 45.0% | |
| TGAACTGTGATGTTGAAGGC+TGG | + | chr4_3:40204273-40204292 | None:intergenic | 45.0% | |
| !! | GATTGGTAGCTTTTTGGAGG+GGG | + | chr4_3:40204382-40204401 | None:intergenic | 45.0% |
| GTGAGAATGAGATGGATCCT+TGG | - | chr4_3:40204604-40204623 | Msa0640820:intron | 45.0% | |
| !! | GCCATGTGGCTGATTTTAAC+CGG | - | chr4_3:40204631-40204650 | Msa0640820:intron | 45.0% |
| !! | CCATGTGGCTGATTTTAACC+GGG | - | chr4_3:40204632-40204651 | Msa0640820:intron | 45.0% |
| ! | CATAATTTGGCGGTTTGGCT+TGG | - | chr4_3:40204693-40204712 | Msa0640820:intron | 45.0% |
| !!! | TTGTTGGCACCGTTTTTTGG+TGG | - | chr4_3:40204762-40204781 | Msa0640820:intron | 45.0% |
| CTCACGGTTCCACCAAAAAA+CGG | + | chr4_3:40204774-40204793 | None:intergenic | 45.0% | |
| ! | GGTCCAAATGGATTCACAAG+TGG | + | chr4_3:40205319-40205338 | None:intergenic | 45.0% |
| ACCAAGAAGTAAGAGCCTTG+AGG | - | chr4_3:40205336-40205355 | Msa0640820:CDS | 45.0% | |
| TCCTCAAGGCTCTTACTTCT+TGG | + | chr4_3:40205340-40205359 | None:intergenic | 45.0% | |
| TCTTGACCCAATTCTTGTGG+TGG | - | chr4_3:40205366-40205385 | Msa0640820:CDS | 45.0% | |
| CTCCAACCACCACAAGAATT+GGG | + | chr4_3:40205375-40205394 | None:intergenic | 45.0% | |
| TCTCCAACCACCACAAGAAT+TGG | + | chr4_3:40205376-40205395 | None:intergenic | 45.0% | |
| GGGCAGAGGATTATGCAAAA+AGG | - | chr4_3:40205416-40205435 | Msa0640820:CDS | 45.0% | |
| ! | TAGCTGGCTTATAGAGGCGA+AGG | + | chr4_3:40204353-40204372 | None:intergenic | 50.0% |
| !! | ACCTGACTATCGACTTGCAC+CGG | - | chr4_3:40204509-40204528 | Msa0640820:intron | 50.0% |
| !! | ATCGACTTGCACCGGAGAAT+CGG | - | chr4_3:40204517-40204536 | Msa0640820:intron | 50.0% |
| CCCGGTTAAAATCAGCCACA+TGG | + | chr4_3:40204635-40204654 | None:intergenic | 50.0% | |
| ! | TTTATTTCGGGTGACTCGGC+TGG | - | chr4_3:40204657-40204676 | Msa0640820:intron | 50.0% |
| !! | GGTTTGGCTTGGGTTTGGAT+CGG | - | chr4_3:40204704-40204723 | Msa0640820:intron | 50.0% |
| TGGGTTTGGATCGGTTGAGT+TGG | - | chr4_3:40204713-40204732 | Msa0640820:intron | 50.0% | |
| ACATAACCCCTAACCCGAAC+CGG | + | chr4_3:40204741-40204760 | None:intergenic | 50.0% | |
| !!! | CGTTTTTTGGTGGAACCGTG+AGG | - | chr4_3:40204772-40204791 | Msa0640820:intron | 50.0% |
| !! | AGCTTCTGACTTGGTCCTCA+CGG | + | chr4_3:40204790-40204809 | None:intergenic | 50.0% |
| AGGACCAAGTCAGAAGCTGA+AGG | - | chr4_3:40204792-40204811 | Msa0640820:intron | 50.0% | |
| CAAGTCAGAAGCTGAAGGAC+CGG | - | chr4_3:40204797-40204816 | Msa0640820:intron | 50.0% | |
| GACCCAATTCTTGTGGTGGT+TGG | - | chr4_3:40205370-40205389 | Msa0640820:CDS | 50.0% | |
| ! | TAGCTGGCTTATAGAGGCGA+AGG | + | chr4_3:40204353-40204372 | None:intergenic | 50.0% |
| !! | ACCTGACTATCGACTTGCAC+CGG | - | chr4_3:40204509-40204528 | Msa0640820:intron | 50.0% |
| !! | ATCGACTTGCACCGGAGAAT+CGG | - | chr4_3:40204517-40204536 | Msa0640820:intron | 50.0% |
| CCCGGTTAAAATCAGCCACA+TGG | + | chr4_3:40204635-40204654 | None:intergenic | 50.0% | |
| ! | TTTATTTCGGGTGACTCGGC+TGG | - | chr4_3:40204657-40204676 | Msa0640820:intron | 50.0% |
| !! | GGTTTGGCTTGGGTTTGGAT+CGG | - | chr4_3:40204704-40204723 | Msa0640820:intron | 50.0% |
| TGGGTTTGGATCGGTTGAGT+TGG | - | chr4_3:40204713-40204732 | Msa0640820:intron | 50.0% | |
| ACATAACCCCTAACCCGAAC+CGG | + | chr4_3:40204741-40204760 | None:intergenic | 50.0% | |
| !!! | CGTTTTTTGGTGGAACCGTG+AGG | - | chr4_3:40204772-40204791 | Msa0640820:intron | 50.0% |
| !! | AGCTTCTGACTTGGTCCTCA+CGG | + | chr4_3:40204790-40204809 | None:intergenic | 50.0% |
| AGGACCAAGTCAGAAGCTGA+AGG | - | chr4_3:40204792-40204811 | Msa0640820:intron | 50.0% | |
| CAAGTCAGAAGCTGAAGGAC+CGG | - | chr4_3:40204797-40204816 | Msa0640820:intron | 50.0% | |
| GACCCAATTCTTGTGGTGGT+TGG | - | chr4_3:40205370-40205389 | Msa0640820:CDS | 50.0% | |
| TTGGAGGGGGATGAGTTAGC+TGG | + | chr4_3:40204369-40204388 | None:intergenic | 55.0% | |
| !! | TCTGCATCGGCTCACGAACA+TGG | - | chr4_3:40204427-40204446 | Msa0640820:CDS | 55.0% |
| TCCGGTGCAAGTCGATAGTC+AGG | + | chr4_3:40204513-40204532 | None:intergenic | 55.0% | |
| ! | GCACATGGAAGCCGATTCTC+CGG | + | chr4_3:40204531-40204550 | None:intergenic | 55.0% |
| GGATCCTTGGTTGAGCCATG+TGG | - | chr4_3:40204617-40204636 | Msa0640820:intron | 55.0% | |
| TCAGCCACATGGCTCAACCA+AGG | + | chr4_3:40204624-40204643 | None:intergenic | 55.0% | |
| !! | TTGGCGGTTTGGCTTGGGTT+TGG | - | chr4_3:40204699-40204718 | Msa0640820:intron | 55.0% |
| !! | TGGATCGGTTGAGTTGGCAC+CGG | - | chr4_3:40204719-40204738 | Msa0640820:intron | 55.0% |
| CGGTCCTTCAGCTTCTGACT+TGG | + | chr4_3:40204799-40204818 | None:intergenic | 55.0% | |
| GGAAACGGACACTAGACACG+CGG | - | chr4_3:40204952-40204971 | Msa0640820:CDS | 55.0% | |
| TTGGAGGGGGATGAGTTAGC+TGG | + | chr4_3:40204369-40204388 | None:intergenic | 55.0% | |
| !! | TCTGCATCGGCTCACGAACA+TGG | - | chr4_3:40204427-40204446 | Msa0640820:CDS | 55.0% |
| TCCGGTGCAAGTCGATAGTC+AGG | + | chr4_3:40204513-40204532 | None:intergenic | 55.0% | |
| ! | GCACATGGAAGCCGATTCTC+CGG | + | chr4_3:40204531-40204550 | None:intergenic | 55.0% |
| GGATCCTTGGTTGAGCCATG+TGG | - | chr4_3:40204617-40204636 | Msa0640820:intron | 55.0% | |
| TCAGCCACATGGCTCAACCA+AGG | + | chr4_3:40204624-40204643 | None:intergenic | 55.0% | |
| !! | TTGGCGGTTTGGCTTGGGTT+TGG | - | chr4_3:40204699-40204718 | Msa0640820:intron | 55.0% |
| !! | TGGATCGGTTGAGTTGGCAC+CGG | - | chr4_3:40204719-40204738 | Msa0640820:intron | 55.0% |
| CGGTCCTTCAGCTTCTGACT+TGG | + | chr4_3:40204799-40204818 | None:intergenic | 55.0% | |
| GGAAACGGACACTAGACACG+CGG | - | chr4_3:40204952-40204971 | Msa0640820:CDS | 55.0% | |
| ! | ATTTCGGGTGACTCGGCTGG+TGG | - | chr4_3:40204660-40204679 | Msa0640820:intron | 60.0% |
| !! | CGGTTGAGTTGGCACCGGTT+CGG | - | chr4_3:40204724-40204743 | Msa0640820:intron | 60.0% |
| !! | GGTTGAGTTGGCACCGGTTC+GGG | - | chr4_3:40204725-40204744 | Msa0640820:intron | 60.0% |
| !! | AGTTGGCACCGGTTCGGGTT+AGG | - | chr4_3:40204730-40204749 | Msa0640820:intron | 60.0% |
| !! | GTTGGCACCGGTTCGGGTTA+GGG | - | chr4_3:40204731-40204750 | Msa0640820:intron | 60.0% |
| !! | TTGGCACCGGTTCGGGTTAG+GGG | - | chr4_3:40204732-40204751 | Msa0640820:intron | 60.0% |
| ! | ATTTCGGGTGACTCGGCTGG+TGG | - | chr4_3:40204660-40204679 | Msa0640820:intron | 60.0% |
| !! | CGGTTGAGTTGGCACCGGTT+CGG | - | chr4_3:40204724-40204743 | Msa0640820:intron | 60.0% |
| !! | GGTTGAGTTGGCACCGGTTC+GGG | - | chr4_3:40204725-40204744 | Msa0640820:intron | 60.0% |
| !! | AGTTGGCACCGGTTCGGGTT+AGG | - | chr4_3:40204730-40204749 | Msa0640820:intron | 60.0% |
| !! | GTTGGCACCGGTTCGGGTTA+GGG | - | chr4_3:40204731-40204750 | Msa0640820:intron | 60.0% |
| !! | TTGGCACCGGTTCGGGTTAG+GGG | - | chr4_3:40204732-40204751 | Msa0640820:intron | 60.0% |
| ! | CACGGTGGCGGCTTCTGCAT+CGG | - | chr4_3:40204414-40204433 | Msa0640820:CDS | 65.0% |
| ! | CACGGTGGCGGCTTCTGCAT+CGG | - | chr4_3:40204414-40204433 | Msa0640820:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 40204192 | 40205573 | 40204192 | ID=Msa0640820;Name=Msa0640820 |
| chr4_3 | mRNA | 40204192 | 40205573 | 40204192 | ID=Msa0640820-mRNA-1;Parent=Msa0640820;Name=Msa0640820-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|320 |
| chr4_3 | exon | 40204912 | 40205573 | 40204912 | ID=Msa0640820-mRNA-1:exon:9045;Parent=Msa0640820-mRNA-1 |
| chr4_3 | exon | 40204192 | 40204492 | 40204192 | ID=Msa0640820-mRNA-1:exon:9044;Parent=Msa0640820-mRNA-1 |
| chr4_3 | CDS | 40204912 | 40205573 | 40204912 | ID=Msa0640820-mRNA-1:cds;Parent=Msa0640820-mRNA-1 |
| chr4_3 | CDS | 40204192 | 40204492 | 40204192 | ID=Msa0640820-mRNA-1:cds;Parent=Msa0640820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
