AlfalfaGEDB | Msa0640820

M. sativa cultivar zhongmu-4 / Msa0640820

KEGG: -
GO: GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787
PFAM: PF07859.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0640820	XP_013455693.1	96.250	320	10	1	1	320	1	318	0.0	633

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0640820	sp\|Q9FG13\|CXE15_ARATH	48.589	319	155	5	5	317	10	325	3.05e-101	303

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0640820	A0A072UIY5	96.250	320	10	1	1	320	1	318	0.0	633

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0187540	Msa0640820	0.822293	2.560294e-53	-8.615850e-47
Msa0481630	Msa0640820	0.827160	1.823513e-54	-8.615850e-47
Msa0544490	Msa0640820	0.886073	4.696246e-72	-8.615850e-47
Msa0640820	Msa0653450	0.811872	5.632144e-51	-8.615850e-47
Msa0640820	Msa1092310	0.802156	6.411894e-49	-8.615850e-47
Msa0640820	Msa1121040	0.804354	2.248806e-49	-8.615850e-47
Msa0640820	Msa1129330	0.835093	2.051165e-56	-8.615850e-47
Msa0640820	Msa1150280	0.801751	7.767333e-49	-8.615850e-47
Msa0640820	Msa1341840	0.814426	1.549783e-51	-8.615850e-47
Msa0640820	Msa1461370	0.824883	6.339147e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0640820	MtrunA17_Chr4g0025291	96.250	320	10	1	1	320	1	318	0.0	633
Msa0640820	MtrunA17_Chr7g0268091	57.188	313	131	3	5	317	7	316	2.01e-125	362
Msa0640820	MtrunA17_Chr3g0081521	36.047	344	191	8	2	320	4	343	8.96e-64	205
Msa0640820	MtrunA17_Chr1g0210121	37.615	327	182	10	4	317	25	342	1.22e-63	205
Msa0640820	MtrunA17_Chr7g0214851	34.862	327	193	9	11	319	27	351	2.57e-59	194
Msa0640820	MtrunA17_Chr7g0235741	34.356	326	191	8	2	317	37	349	1.21e-53	179
Msa0640820	MtrunA17_Chr4g0045181	33.129	326	195	8	2	317	5	317	8.35e-52	173
Msa0640820	MtrunA17_Chr3g0133701	33.974	312	191	7	13	319	15	316	2.50e-51	172
Msa0640820	MtrunA17_Chr1g0205871	33.642	324	201	7	2	317	5	322	8.91e-50	168
Msa0640820	MtrunA17_Chr4g0045131	33.333	333	188	9	2	318	41	355	3.41e-49	167

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0640820	AT5G06570.1	48.589	319	155	5	5	317	10	325	3.11e-102	303
Msa0640820	AT5G06570.2	48.589	319	155	5	5	317	10	325	3.11e-102	303
Msa0640820	AT5G06570.3	48.589	319	155	5	5	317	25	340	3.31e-102	303
Msa0640820	AT5G06570.4	48.589	319	155	5	5	317	25	340	3.31e-102	303
Msa0640820	AT5G16080.1	34.365	323	195	8	5	318	28	342	4.62e-57	188
Msa0640820	AT1G68620.1	35.494	324	187	10	5	320	23	332	8.13e-52	174
Msa0640820	AT5G27320.1	36.593	317	169	8	18	317	38	339	1.39e-51	174
Msa0640820	AT5G62180.1	36.624	314	174	9	18	317	21	323	2.48e-50	170
Msa0640820	AT3G63010.1	34.472	322	173	7	18	318	38	342	2.33e-47	163
Msa0640820	AT3G05120.1	32.915	319	180	6	18	317	38	341	9.54e-47	161

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Find 71 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGATTTGCTTAAAGAT+AGG	0.343018	4_3:-40204348	Msa0640820:CDS
AAACCATCTTCAATAGCACA+TGG	0.641464	4_3:+40205200	None:intergenic
AAATGATTTGCTTAAAGATA+GGG	0.489878	4_3:-40204347	Msa0640820:CDS
AACATCACAGTTCAAGACAA+CGG	0.659552	4_3:-40205464	Msa0640820:CDS
AAGTTGAGAAAAGCATCATC+CGG	0.562536	4_3:+40204927	None:intergenic
AATTCATAGAGAAATATTAA+GGG	0.484386	4_3:-40204189	None:intergenic
AATTTGAAGGACAGCAACAT+GGG	0.616359	4_3:-40204270	Msa0640820:CDS
ACATAACCCCTAACCCGAAC+CGG	0.456317	4_3:+40205005	None:intergenic
ACCAAGAAGTAAGAGCCTTG+AGG	0.706738	4_3:-40204407	Msa0640820:CDS
ACCATCAAAAGAGTTGATGT+TGG	0.606485	4_3:-40204221	Msa0640820:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAGAAAAGAGTTACAAACT+CGG	-	chr4_3:40204931-40204950	Msa0640820:CDS	30.0%
AATTAGACGTAATCATGTGT+CGG	-	chr4_3:40205003-40205022	Msa0640820:CDS	30.0%
ATGCAAAAAGGCTTAAGAAT+TGG	-	chr4_3:40205428-40205447	Msa0640820:CDS	30.0%
TGCAAAAAGGCTTAAGAATT+GGG	-	chr4_3:40205429-40205448	Msa0640820:CDS	30.0%
TGAGAAAAGAGTTACAAACT+CGG	-	chr4_3:40204931-40204950	Msa0640820:CDS	30.0%
AATTAGACGTAATCATGTGT+CGG	-	chr4_3:40205003-40205022	Msa0640820:CDS	30.0%
ATGCAAAAAGGCTTAAGAAT+TGG	-	chr4_3:40205428-40205447	Msa0640820:CDS	30.0%
TGCAAAAAGGCTTAAGAATT+GGG	-	chr4_3:40205429-40205448	Msa0640820:CDS	30.0%
GTTCTTCATGTCTATAACGA+CGG	-	chr4_3:40204225-40204244	Msa0640820:CDS	35.0%
AACATCACAGTTCAAGACAA+CGG	-	chr4_3:40204279-40204298	Msa0640820:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	40204192	40205573	40204192	ID=Msa0640820;Name=Msa0640820
chr4_3	mRNA	40204192	40205573	40204192	ID=Msa0640820-mRNA-1;Parent=Msa0640820;Name=Msa0640820-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0\|0\|1\|1\|1\|2\|0\|320
chr4_3	exon	40204912	40205573	40204912	ID=Msa0640820-mRNA-1:exon:9045;Parent=Msa0640820-mRNA-1
chr4_3	exon	40204192	40204492	40204192	ID=Msa0640820-mRNA-1:exon:9044;Parent=Msa0640820-mRNA-1
chr4_3	CDS	40204912	40205573	40204912	ID=Msa0640820-mRNA-1:cds;Parent=Msa0640820-mRNA-1
chr4_3	CDS	40204192	40204492	40204192	ID=Msa0640820-mRNA-1:cds;Parent=Msa0640820-mRNA-1

Gene Sequence

>Msa0640820

ATGTCAAAAACTATAGTTGACGAATGTCGTGGTGTTCTTCATGTCTATAACGACGGTTCCATAGTTCGCACGTTAAACCCAGCCTTCAACATCACAGTTCAAGACAACGGCACTGTTTTATGGAAAGATGTTGTTTTCGACTCAACACACAATCTTCACCTTCGCCTCTATAAGCCAGCTAACTCATCCCCCTCCAAAAAGCTACCAATCTTTTACTACATTCACGGTGGCGGCTTCTGCATCGGCTCACGAACATGGCCAAACTGTCAAAACTACTGCTTCAAGCTCGCTTCTGAGCTTGAAGCAGTAGTTGTTGCACCTGACTATCGACTTGCACCGGAGAATCGGCTTCCATGTGCTATTGAAGATGGTTTCATGACTGTTAAGTGGCTTCAAGAAGAAGCTTTGAAGAGTGAGAATGAGATGGATCCTTGGTTGAGCCATGTGGCTGATTTTAACCGGGTTTTTATTTCGGGTGACTCGGCTGGTGGTAATATAGCTCATAATTTGGCGGTTTGGCTTGGGTTTGGATCGGTTGAGTTGGCACCGGTTCGGGTTAGGGGTTATGTTTTGTTGGCACCGTTTTTTGGTGGAACCGTGAGGACCAAGTCAGAAGCTGAAGGACCGGATGATGCTTTTCTCAACTTGGAACTTATTGACAGGTATTGGAGACTTTCTATACCCATTGGAGAGAATACTGATCATCCACTTGTGAATCCATTTGGACCAAGAAGTAAGAGCCTTGAGGAAATTGATCTTGACCCAATTCTTGTGGTGGTTGGAGAAAATGATTTGCTTAAAGATAGGGCAGAGGATTATGCAAAAAGGCTTAAGAATTGGGGTAAAAATATAGAGTATGTAGAATTTGAAGGACAGCAACATGGGTTCTTCACTATTGATCCAAATTCAGAACCATCAAAAGAGTTGATGTTGGTCATCAAACAATTCATAGAGAAATATTAA

Protein sequence

>Msa0640820

MSKTIVDECRGVLHVYNDGSIVRTLNPAFNITVQDNGTVLWKDVVFDSTHNLHLRLYKPANSSPSKKLPIFYYIHGGGFCIGSRTWPNCQNYCFKLASELEAVVVAPDYRLAPENRLPCAIEDGFMTVKWLQEEALKSENEMDPWLSHVADFNRVFISGDSAGGNIAHNLAVWLGFGSVELAPVRVRGYVLLAPFFGGTVRTKSEAEGPDDAFLNLELIDRYWRLSIPIGENTDHPLVNPFGPRSKSLEEIDLDPILVVVGENDLLKDRAEDYAKRLKNWGKNIEYVEFEGQQHGFFTIDPNSEPSKELMLVIKQFIEKY*