Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544490 | XP_013455693.1 | 96.855 | 318 | 10 | 0 | 1 | 318 | 1 | 318 | 0.0 | 640 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544490 | sp|Q9FG13|CXE15_ARATH | 48.896 | 317 | 155 | 4 | 5 | 315 | 10 | 325 | 2.70e-104 | 311 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544490 | A0A072UIY5 | 96.855 | 318 | 10 | 0 | 1 | 318 | 1 | 318 | 0.0 | 640 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0081020 | Msa0544490 | 0.808452 | 3.075672e-50 | -8.615850e-47 |
| Msa0132000 | Msa0544490 | 0.800217 | 1.598601e-48 | -8.615850e-47 |
| Msa0187540 | Msa0544490 | 0.821546 | 3.811383e-53 | -8.615850e-47 |
| Msa0457560 | Msa0544490 | 0.819446 | 1.156809e-52 | -8.615850e-47 |
| Msa0481630 | Msa0544490 | 0.821444 | 4.025059e-53 | -8.615850e-47 |
| Msa0256920 | Msa0544490 | 0.800299 | 1.538321e-48 | -8.615850e-47 |
| Msa0282960 | Msa0544490 | 0.806110 | 9.643017e-50 | -8.615850e-47 |
| Msa0334630 | Msa0544490 | 0.809639 | 1.713164e-50 | -8.615850e-47 |
| Msa0513970 | Msa0544490 | 0.811434 | 7.013194e-51 | -8.615850e-47 |
| Msa0544490 | Msa0576790 | 0.804265 | 2.346537e-49 | -8.615850e-47 |
| Msa0544490 | Msa0612350 | 0.805812 | 1.114042e-49 | -8.615850e-47 |
| Msa0544490 | Msa0640820 | 0.886073 | 4.696246e-72 | -8.615850e-47 |
| Msa0544490 | Msa0657720 | 0.822503 | 2.287437e-53 | -8.615850e-47 |
| Msa0544490 | Msa0702790 | 0.806278 | 8.890838e-50 | -8.615850e-47 |
| Msa0544490 | Msa0706230 | 0.811120 | 8.204986e-51 | -8.615850e-47 |
| Msa0544490 | Msa0828950 | 0.810409 | 1.169494e-50 | -8.615850e-47 |
| Msa0544490 | Msa0828960 | 0.800414 | 1.457697e-48 | -8.615850e-47 |
| Msa0544490 | Msa0842750 | 0.818221 | 2.194772e-52 | -8.615850e-47 |
| Msa0544490 | Msa0930270 | 0.807829 | 4.174359e-50 | -8.615850e-47 |
| Msa0544490 | Msa0947870 | 0.802583 | 5.237779e-49 | -8.615850e-47 |
| Msa0544490 | Msa1092310 | 0.841888 | 3.615175e-58 | -8.615850e-47 |
| Msa0544490 | Msa1125250 | 0.814923 | 1.202882e-51 | -8.615850e-47 |
| Msa0544490 | Msa1129330 | 0.820940 | 5.259602e-53 | -8.615850e-47 |
| Msa0544490 | Msa1154320 | 0.835948 | 1.246694e-56 | -8.615850e-47 |
| Msa0544490 | Msa1238600 | 0.815442 | 9.223320e-52 | -8.615850e-47 |
| Msa0544490 | Msa1238660 | 0.821848 | 3.246391e-53 | -8.615850e-47 |
| Msa0544490 | Msa1255210 | 0.804471 | 2.125825e-49 | -8.615850e-47 |
| Msa0544490 | Msa1319560 | 0.809339 | 1.987179e-50 | -8.615850e-47 |
| Msa0544490 | Msa1341840 | 0.814816 | 1.270839e-51 | -8.615850e-47 |
| Msa0544490 | Msa1384700 | 0.806797 | 6.908819e-50 | -8.615850e-47 |
| Msa0544490 | Msa1417380 | 0.815388 | 9.483611e-52 | -8.615850e-47 |
| Msa0544490 | Msa1461370 | 0.822247 | 2.623871e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544490 | MtrunA17_Chr4g0025291 | 96.855 | 318 | 10 | 0 | 1 | 318 | 1 | 318 | 0.0 | 640 |
| Msa0544490 | MtrunA17_Chr7g0268091 | 57.372 | 312 | 130 | 3 | 5 | 315 | 7 | 316 | 6.25e-126 | 363 |
| Msa0544490 | MtrunA17_Chr3g0081521 | 36.257 | 342 | 191 | 7 | 2 | 318 | 4 | 343 | 3.03e-65 | 209 |
| Msa0544490 | MtrunA17_Chr1g0210121 | 37.920 | 327 | 179 | 10 | 4 | 315 | 25 | 342 | 1.06e-64 | 207 |
| Msa0544490 | MtrunA17_Chr7g0214851 | 34.154 | 325 | 196 | 7 | 11 | 317 | 27 | 351 | 3.15e-60 | 196 |
| Msa0544490 | MtrunA17_Chr7g0235741 | 34.568 | 324 | 191 | 7 | 2 | 315 | 37 | 349 | 1.19e-56 | 187 |
| Msa0544490 | MtrunA17_Chr4g0045181 | 33.951 | 324 | 193 | 7 | 2 | 315 | 5 | 317 | 5.18e-55 | 181 |
| Msa0544490 | MtrunA17_Chr4g0045131 | 34.139 | 331 | 186 | 8 | 2 | 316 | 41 | 355 | 6.36e-53 | 177 |
| Msa0544490 | MtrunA17_Chr1g0204211 | 39.313 | 262 | 150 | 4 | 40 | 298 | 68 | 323 | 7.47e-52 | 174 |
| Msa0544490 | MtrunA17_Chr3g0133701 | 33.651 | 315 | 186 | 8 | 13 | 317 | 15 | 316 | 2.92e-51 | 172 |
| Msa0544490 | MtrunA17_Chr1g0149271 | 35.093 | 322 | 187 | 12 | 4 | 317 | 2 | 309 | 8.45e-50 | 168 |
| Msa0544490 | MtrunA17_Chr1g0191301 | 35.331 | 317 | 172 | 7 | 18 | 315 | 38 | 340 | 2.41e-49 | 167 |
| Msa0544490 | MtrunA17_Chr1g0205871 | 33.642 | 324 | 199 | 8 | 2 | 315 | 5 | 322 | 3.94e-49 | 166 |
| Msa0544490 | MtrunA17_Chr1g0196311 | 35.423 | 319 | 171 | 7 | 18 | 316 | 54 | 357 | 4.50e-48 | 164 |
| Msa0544490 | MtrunA17_Chr8g0351201 | 35.738 | 305 | 187 | 6 | 18 | 317 | 26 | 326 | 1.20e-47 | 162 |
| Msa0544490 | MtrunA17_Chr4g0045121 | 35.484 | 310 | 188 | 6 | 12 | 317 | 18 | 319 | 1.67e-47 | 162 |
| Msa0544490 | MtrunA17_Chr6g0477231 | 31.761 | 318 | 191 | 5 | 17 | 317 | 29 | 337 | 4.53e-47 | 161 |
| Msa0544490 | MtrunA17_Chr6g0477251 | 34.185 | 313 | 184 | 5 | 18 | 317 | 586 | 889 | 2.31e-46 | 167 |
| Msa0544490 | MtrunA17_Chr6g0477251 | 33.121 | 314 | 188 | 5 | 18 | 318 | 32 | 336 | 4.47e-46 | 166 |
| Msa0544490 | MtrunA17_Chr7g0259161 | 35.202 | 321 | 173 | 9 | 18 | 315 | 38 | 346 | 3.31e-46 | 159 |
| Msa0544490 | MtrunA17_Chr1g0204201 | 34.965 | 286 | 171 | 6 | 38 | 315 | 47 | 325 | 1.51e-45 | 157 |
| Msa0544490 | MtrunA17_Chr6g0474411 | 34.629 | 283 | 173 | 6 | 38 | 315 | 51 | 326 | 2.03e-45 | 157 |
| Msa0544490 | MtrunA17_Chr6g0474631 | 34.211 | 304 | 171 | 9 | 15 | 302 | 23 | 313 | 2.26e-45 | 157 |
| Msa0544490 | MtrunA17_Chr5g0394241 | 33.333 | 327 | 201 | 9 | 3 | 317 | 7 | 328 | 6.75e-45 | 155 |
| Msa0544490 | MtrunA17_Chr8g0351211 | 33.654 | 312 | 194 | 6 | 13 | 315 | 9 | 316 | 2.67e-44 | 154 |
| Msa0544490 | MtrunA17_Chr6g0474471 | 33.333 | 291 | 174 | 8 | 39 | 318 | 47 | 328 | 1.07e-43 | 152 |
| Msa0544490 | MtrunA17_Chr3g0095711 | 32.121 | 330 | 203 | 9 | 1 | 317 | 49 | 370 | 1.81e-43 | 153 |
| Msa0544490 | MtrunA17_Chr6g0474491 | 33.333 | 315 | 190 | 9 | 12 | 315 | 19 | 324 | 6.27e-43 | 150 |
| Msa0544490 | MtrunA17_Chr5g0394211 | 31.804 | 327 | 202 | 11 | 2 | 315 | 40 | 358 | 2.11e-42 | 150 |
| Msa0544490 | MtrunA17_Chr6g0477161 | 32.509 | 283 | 173 | 4 | 42 | 315 | 61 | 334 | 7.41e-42 | 154 |
| Msa0544490 | MtrunA17_Chr6g0477161 | 32.867 | 286 | 173 | 4 | 42 | 317 | 409 | 685 | 1.72e-41 | 152 |
| Msa0544490 | MtrunA17_Chr5g0394251 | 32.727 | 330 | 201 | 11 | 2 | 317 | 10 | 332 | 1.40e-41 | 147 |
| Msa0544490 | MtrunA17_Chr4g0045191 | 31.562 | 320 | 183 | 7 | 2 | 315 | 15 | 304 | 2.10e-41 | 146 |
| Msa0544490 | MtrunA17_Chr6g0477271 | 32.491 | 277 | 176 | 4 | 43 | 317 | 86 | 353 | 4.58e-41 | 146 |
| Msa0544490 | MtrunA17_Chr8g0353951 | 30.218 | 321 | 210 | 8 | 5 | 317 | 16 | 330 | 1.22e-40 | 144 |
| Msa0544490 | MtrunA17_Chr6g0474541 | 35.981 | 214 | 129 | 4 | 39 | 249 | 75 | 283 | 4.77e-38 | 138 |
| Msa0544490 | MtrunA17_Chr8g0351171 | 28.929 | 280 | 187 | 5 | 42 | 315 | 44 | 317 | 4.85e-37 | 134 |
| Msa0544490 | MtrunA17_Chr7g0228721 | 32.270 | 282 | 151 | 4 | 55 | 298 | 152 | 431 | 2.01e-34 | 130 |
| Msa0544490 | MtrunA17_Chr7g0233871 | 30.061 | 326 | 211 | 8 | 2 | 317 | 9 | 327 | 1.80e-33 | 125 |
| Msa0544490 | MtrunA17_Chr6g0458881 | 31.579 | 266 | 144 | 4 | 66 | 298 | 158 | 418 | 3.86e-33 | 127 |
| Msa0544490 | MtrunA17_Chr1g0205791 | 32.110 | 327 | 196 | 10 | 3 | 318 | 8 | 319 | 4.08e-33 | 125 |
| Msa0544490 | MtrunA17_Chr1g0205781 | 29.448 | 326 | 210 | 7 | 2 | 317 | 9 | 324 | 2.79e-32 | 122 |
| Msa0544490 | MtrunA17_Chr6g0477241 | 27.018 | 285 | 143 | 5 | 42 | 317 | 71 | 299 | 5.28e-29 | 113 |
| Msa0544490 | MtrunA17_Chr6g0474611 | 29.114 | 158 | 102 | 5 | 153 | 302 | 4 | 159 | 6.29e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544490 | AT5G06570.1 | 48.896 | 317 | 155 | 4 | 5 | 315 | 10 | 325 | 2.74e-105 | 311 |
| Msa0544490 | AT5G06570.2 | 48.896 | 317 | 155 | 4 | 5 | 315 | 10 | 325 | 2.74e-105 | 311 |
| Msa0544490 | AT5G06570.3 | 48.896 | 317 | 155 | 4 | 5 | 315 | 25 | 340 | 3.20e-105 | 311 |
| Msa0544490 | AT5G06570.4 | 48.896 | 317 | 155 | 4 | 5 | 315 | 25 | 340 | 3.20e-105 | 311 |
| Msa0544490 | AT5G16080.1 | 34.675 | 323 | 192 | 9 | 5 | 316 | 28 | 342 | 1.15e-56 | 187 |
| Msa0544490 | AT5G62180.1 | 38.245 | 319 | 172 | 10 | 13 | 315 | 14 | 323 | 5.07e-54 | 179 |
| Msa0544490 | AT5G27320.1 | 37.460 | 315 | 167 | 8 | 18 | 315 | 38 | 339 | 1.06e-53 | 179 |
| Msa0544490 | AT1G68620.1 | 35.404 | 322 | 188 | 8 | 5 | 318 | 23 | 332 | 2.03e-53 | 178 |
| Msa0544490 | AT3G05120.1 | 34.700 | 317 | 175 | 6 | 18 | 315 | 38 | 341 | 2.48e-50 | 171 |
| Msa0544490 | AT3G63010.1 | 35.625 | 320 | 170 | 7 | 18 | 316 | 38 | 342 | 5.92e-50 | 170 |
| Msa0544490 | AT1G47480.1 | 29.870 | 308 | 201 | 6 | 13 | 317 | 16 | 311 | 7.64e-47 | 160 |
| Msa0544490 | AT2G45600.1 | 34.643 | 280 | 164 | 7 | 13 | 283 | 16 | 285 | 1.15e-46 | 160 |
| Msa0544490 | AT3G48690.1 | 33.333 | 324 | 205 | 7 | 1 | 316 | 1 | 321 | 3.21e-44 | 154 |
| Msa0544490 | AT3G48700.1 | 32.733 | 333 | 200 | 10 | 1 | 316 | 1 | 326 | 3.94e-44 | 154 |
| Msa0544490 | AT2G45610.1 | 32.857 | 280 | 179 | 4 | 42 | 316 | 49 | 324 | 2.01e-43 | 152 |
| Msa0544490 | AT5G23530.1 | 33.115 | 305 | 188 | 6 | 18 | 317 | 35 | 328 | 3.38e-43 | 151 |
| Msa0544490 | AT1G19190.1 | 29.073 | 313 | 204 | 7 | 13 | 317 | 13 | 315 | 3.46e-40 | 143 |
| Msa0544490 | AT2G03550.1 | 28.659 | 328 | 207 | 9 | 1 | 317 | 1 | 312 | 1.18e-36 | 134 |
| Msa0544490 | AT3G27320.2 | 33.692 | 279 | 148 | 6 | 55 | 298 | 120 | 396 | 2.05e-36 | 135 |
| Msa0544490 | AT3G27320.1 | 33.692 | 279 | 148 | 6 | 55 | 298 | 152 | 428 | 4.26e-36 | 135 |
| Msa0544490 | AT1G49650.1 | 31.190 | 311 | 198 | 9 | 13 | 316 | 69 | 370 | 5.65e-35 | 130 |
| Msa0544490 | AT5G14310.1 | 30.537 | 298 | 168 | 4 | 57 | 315 | 140 | 437 | 5.67e-35 | 132 |
| Msa0544490 | AT1G49640.1 | 29.904 | 311 | 199 | 9 | 13 | 315 | 14 | 313 | 1.46e-33 | 125 |
| Msa0544490 | AT1G49660.1 | 30.450 | 289 | 175 | 8 | 1 | 276 | 1 | 276 | 1.50e-31 | 120 |
Find 81 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCAAGACTCTTACTTCT+TGG | 0.229674 | 4_1:-33088612 | None:intergenic |
| AGTTGGCACCGGTTCGGGTT+AGG | 0.267807 | 4_1:+33088008 | Msa0544490:CDS |
| TCTCCAACCACCACAAGAAT+TGG | 0.284897 | 4_1:-33088648 | None:intergenic |
| CAATTCATAGAGAAATATTA+AGG | 0.314893 | 4_1:+33088828 | Msa0544490:CDS |
| GTTGGCACCGGTTCGGGTTA+GGG | 0.314906 | 4_1:+33088009 | Msa0544490:CDS |
| GATGTTGAAGGCTGGGTTTA+AGG | 0.327537 | 4_1:-33087546 | None:intergenic |
| CTCTTACTTCTTGGTCCAAA+TGG | 0.332409 | 4_1:-33088603 | None:intergenic |
| GGTTGAGTTGGCACCGGTTC+GGG | 0.335939 | 4_1:+33088003 | Msa0544490:CDS |
| CATAATTTGGCGGTTCGGCT+TGG | 0.340685 | 4_1:+33087971 | Msa0544490:CDS |
| AAAATGATTTGCTTAAAGAT+AGG | 0.343018 | 4_1:+33088670 | Msa0544490:CDS |
| TGGTAATATAGCTCATAATT+TGG | 0.349968 | 4_1:+33087958 | Msa0544490:CDS |
| ATAATTTGGCGGTTCGGCTT+GGG | 0.366338 | 4_1:+33087972 | Msa0544490:CDS |
| CGGTTGAGTTGGCACCGGTT+CGG | 0.381756 | 4_1:+33088002 | Msa0544490:CDS |
| CATCCACTTGTGAATCCATT+TGG | 0.383792 | 4_1:+33088588 | Msa0544490:CDS |
| TGAACTGTGATGTTGAAGGC+TGG | 0.384844 | 4_1:-33087554 | None:intergenic |
| GTATCCAAAGTGTGTTGAAT+TGG | 0.386001 | 4_1:+33088930 | Msa0544490:three_prime_UTR |
| TTGGCGGTTCGGCTTGGGTT+TGG | 0.393545 | 4_1:+33087977 | Msa0544490:CDS |
| ATCGACTTGCACCGGAGAAT+CGG | 0.395410 | 4_1:+33087801 | Msa0544490:CDS |
| TGCTATTGAAGATGGTTTCA+TGG | 0.412164 | 4_1:+33087832 | Msa0544490:CDS |
| CTCCAACCACCACAAGAATT+GGG | 0.412421 | 4_1:-33088647 | None:intergenic |
| CCGTGAATGTAGTAAATGAT+TGG | 0.422604 | 4_1:-33087680 | None:intergenic |
| CCAATCATTTACTACATTCA+CGG | 0.430180 | 4_1:+33087680 | Msa0544490:CDS |
| TAGCTCATAATTTGGCGGTT+CGG | 0.432903 | 4_1:+33087966 | Msa0544490:CDS |
| TTTATTTCGGGTGACTCGGC+TGG | 0.436373 | 4_1:+33087935 | Msa0544490:CDS |
| TGGGTTTAAGGTTCGAACTA+TGG | 0.437115 | 4_1:-33087534 | None:intergenic |
| GGTTCGGCTTGGGTTTGGTT+CGG | 0.440596 | 4_1:+33087982 | Msa0544490:CDS |
| TTGGCACCGGTTCGGGTTAG+GGG | 0.442158 | 4_1:+33088010 | Msa0544490:CDS |
| TTGGAGGGTGATGAGTTAGC+TGG | 0.444365 | 4_1:-33087650 | None:intergenic |
| ATAGAGTATGTAGAATTTGA+AGG | 0.444698 | 4_1:+33088735 | Msa0544490:CDS |
| GGGCAGAGGATTATGCAAAA+AGG | 0.446914 | 4_1:+33088691 | Msa0544490:CDS |
| CGGTCCTTCAGCTTCTGACT+TGG | 0.447400 | 4_1:-33088074 | None:intergenic |
| AGCTTCTGACTTGGTCCTCA+CGG | 0.456270 | 4_1:-33088065 | None:intergenic |
| ACATAACCCCTAACCCGAAC+CGG | 0.456317 | 4_1:-33088016 | None:intergenic |
| TGGGTTTGGTTCGGTTGAGT+TGG | 0.466016 | 4_1:+33087991 | Msa0544490:CDS |
| CTACCATGTGCTATTGAAGA+TGG | 0.466247 | 4_1:+33087824 | Msa0544490:CDS |
| AACTCCAATTCAACACACTT+TGG | 0.469801 | 4_1:-33088934 | None:intergenic |
| TCCGGTGCAAGTCGATAGTC+AGG | 0.479375 | 4_1:-33087794 | None:intergenic |
| GAACTGTGATGTTGAAGGCT+GGG | 0.480754 | 4_1:-33087553 | None:intergenic |
| CATATGATGCAATTTGAGTC+TGG | 0.489440 | 4_1:+33088973 | Msa0544490:three_prime_UTR |
| TTAATATTAACAGGTATTGG+AGG | 0.489703 | 4_1:+33088535 | Msa0544490:intron |
| AAATGATTTGCTTAAAGATA+GGG | 0.489878 | 4_1:+33088671 | Msa0544490:CDS |
| TGGAGGCTTTCTATACCCAT+TGG | 0.491090 | 4_1:+33088552 | Msa0544490:CDS |
| AATTCATAGAGAAATATTAA+GGG | 0.499926 | 4_1:+33088829 | Msa0544490:CDS |
| TCTGCATCGGCTCACGAACA+TGG | 0.500777 | 4_1:+33087711 | Msa0544490:CDS |
| TCAACTTGGAACTTATTGAC+AGG | 0.502436 | 4_1:+33088110 | Msa0544490:CDS |
| ATGGTTTCATGGCTGTTAAG+TGG | 0.502959 | 4_1:+33087843 | Msa0544490:CDS |
| GTCTTGAACTGTGATGTTGA+AGG | 0.511456 | 4_1:-33087558 | None:intergenic |
| GACCCAATTCTTGTGGTGGT+TGG | 0.518707 | 4_1:+33088645 | Msa0544490:CDS |
| TGAAGAGTGAGATGGATCCT+TGG | 0.522474 | 4_1:+33087882 | Msa0544490:CDS |
| CACGGAGGCGGCTTCTGCAT+CGG | 0.523900 | 4_1:+33087698 | Msa0544490:CDS |
| TGATGCAATTTGAGTCTGGT+TGG | 0.524875 | 4_1:+33088977 | Msa0544490:three_prime_UTR |
| GCACATGGTAGCCGATTCTC+CGG | 0.525909 | 4_1:-33087812 | None:intergenic |
| ATTTACTACATTCACGGAGG+CGG | 0.531233 | 4_1:+33087686 | Msa0544490:CDS |
| AGAAGCTTTGAAGAGTGAGA+TGG | 0.536702 | 4_1:+33087874 | Msa0544490:CDS |
| ATGATCAGTATCCTCTCCAA+TGG | 0.553685 | 4_1:-33088568 | None:intergenic |
| CAAGTCAGAAGCTGAAGGAC+CGG | 0.553703 | 4_1:+33088075 | Msa0544490:CDS |
| AAGTTGAGAAAAGCATCATC+CGG | 0.562536 | 4_1:-33088094 | None:intergenic |
| TGGTTCGGTTGAGTTGGCAC+CGG | 0.564253 | 4_1:+33087997 | Msa0544490:CDS |
| ATTTCGGGTGACTCGGCTGG+TGG | 0.569148 | 4_1:+33087938 | Msa0544490:CDS |
| TGATCAGTATCCTCTCCAAT+GGG | 0.571622 | 4_1:-33088567 | None:intergenic |
| GTTCTTCATATCTATAACGA+CGG | 0.575162 | 4_1:+33087509 | Msa0544490:CDS |
| TCTTGACCCAATTCTTGTGG+TGG | 0.585357 | 4_1:+33088641 | Msa0544490:CDS |
| ACCTGACTATCGACTTGCAC+CGG | 0.588313 | 4_1:+33087793 | Msa0544490:CDS |
| TTTGCTTAAAGATAGGGCAG+AGG | 0.596874 | 4_1:+33088677 | Msa0544490:CDS |
| TAATATAGCTCATAATTTGG+CGG | 0.598417 | 4_1:+33087961 | Msa0544490:CDS |
| ACCATCAAAAGAGTTGATGT+TGG | 0.606485 | 4_1:+33088797 | Msa0544490:CDS |
| CCCGGTTAAAATCAGCCACA+TGG | 0.609681 | 4_1:-33087910 | None:intergenic |
| TGATCTTGACCCAATTCTTG+TGG | 0.614564 | 4_1:+33088638 | Msa0544490:CDS |
| GAATTTGAAGGACAACAACA+TGG | 0.622261 | 4_1:+33088747 | Msa0544490:CDS |
| GCTTTCTATACCCATTGGAG+AGG | 0.632362 | 4_1:+33088557 | Msa0544490:CDS |
| ACCAAGAAGTAAGAGTCTTG+AGG | 0.633825 | 4_1:+33088611 | Msa0544490:CDS |
| AGGACCAAGTCAGAAGCTGA+AGG | 0.644457 | 4_1:+33088070 | Msa0544490:CDS |
| ACTATAGTTGACGAATGTCG+TGG | 0.650039 | 4_1:+33087485 | Msa0544490:CDS |
| GGTCCAAATGGATTCACAAG+TGG | 0.650243 | 4_1:-33088591 | None:intergenic |
| AACATCACAGTTCAAGACAA+CGG | 0.659552 | 4_1:+33087563 | Msa0544490:CDS |
| TCAGCCACATGGCTCAACCA+AGG | 0.660011 | 4_1:-33087899 | None:intergenic |
| TAGCTGGCTTATAGAGACGA+AGG | 0.673801 | 4_1:-33087634 | None:intergenic |
| GGATCCTTGGTTGAGCCATG+TGG | 0.675420 | 4_1:+33087895 | Msa0544490:CDS |
| AAACCATCTTCAATAGCACA+TGG | 0.689877 | 4_1:-33087827 | None:intergenic |
| ATCATTTACTACATTCACGG+AGG | 0.723993 | 4_1:+33087683 | Msa0544490:CDS |
| AAGGTGAAGATTGTGTGTTG+AGG | 0.728160 | 4_1:-33087615 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAAAAATTAAATCATTAT+TGG | - | chr4_1:33088350-33088369 | None:intergenic | 10.0% |
| !! | TCAAAAAATTAAATCATTAT+TGG | - | chr4_1:33088350-33088369 | None:intergenic | 10.0% |
| !!! | TATAAAAAGTGTCAAAATTA+TGG | + | chr4_1:33088442-33088461 | Msa0544490:intron | 15.0% |
| !! | AATTCATAGAGAAATATTAA+GGG | + | chr4_1:33088829-33088848 | Msa0544490:CDS | 15.0% |
| !!! | TATAAAAAGTGTCAAAATTA+TGG | + | chr4_1:33088442-33088461 | Msa0544490:intron | 15.0% |
| !! | AATTCATAGAGAAATATTAA+GGG | + | chr4_1:33088829-33088848 | Msa0544490:CDS | 15.0% |
| !! | CTTGCATAATGTAAAATATT+TGG | - | chr4_1:33088171-33088190 | None:intergenic | 20.0% |
| !! | TTTGTACCTTTAATATTAAC+AGG | + | chr4_1:33088526-33088545 | Msa0544490:intron | 20.0% |
| !!! | AAAATGATTTGCTTAAAGAT+AGG | + | chr4_1:33088670-33088689 | Msa0544490:CDS | 20.0% |
| !!! | AAATGATTTGCTTAAAGATA+GGG | + | chr4_1:33088671-33088690 | Msa0544490:CDS | 20.0% |
| !! | CAATTCATAGAGAAATATTA+AGG | + | chr4_1:33088828-33088847 | Msa0544490:CDS | 20.0% |
| !! | GCTACTACAATTAAAAAAAA+TGG | - | chr4_1:33088888-33088907 | None:intergenic | 20.0% |
| !!! | TTTAATTGTAGTAGCTTTTA+AGG | + | chr4_1:33088893-33088912 | Msa0544490:three_prime_UTR | 20.0% |
| !! | CTTGCATAATGTAAAATATT+TGG | - | chr4_1:33088171-33088190 | None:intergenic | 20.0% |
| !! | TTTGTACCTTTAATATTAAC+AGG | + | chr4_1:33088526-33088545 | Msa0544490:intron | 20.0% |
| !!! | AAAATGATTTGCTTAAAGAT+AGG | + | chr4_1:33088670-33088689 | Msa0544490:CDS | 20.0% |
| !!! | AAATGATTTGCTTAAAGATA+GGG | + | chr4_1:33088671-33088690 | Msa0544490:CDS | 20.0% |
| !! | CAATTCATAGAGAAATATTA+AGG | + | chr4_1:33088828-33088847 | Msa0544490:CDS | 20.0% |
| !! | GCTACTACAATTAAAAAAAA+TGG | - | chr4_1:33088888-33088907 | None:intergenic | 20.0% |
| !!! | TTTAATTGTAGTAGCTTTTA+AGG | + | chr4_1:33088893-33088912 | Msa0544490:three_prime_UTR | 20.0% |
| !!! | GACATTTTTTTTAGAAGCAA+AGG | - | chr4_1:33087461-33087480 | None:intergenic | 25.0% |
| !!! | TTTTAACCGGGTTTTTATTT+CGG | + | chr4_1:33087922-33087941 | Msa0544490:CDS | 25.0% |
| ! | TGGTAATATAGCTCATAATT+TGG | + | chr4_1:33087958-33087977 | Msa0544490:CDS | 25.0% |
| ! | TAATATAGCTCATAATTTGG+CGG | + | chr4_1:33087961-33087980 | Msa0544490:CDS | 25.0% |
| !! | AGTATTTGTTGCTTATTGAA+AGG | + | chr4_1:33088493-33088512 | Msa0544490:intron | 25.0% |
| ! | CCAATACCTGTTAATATTAA+AGG | - | chr4_1:33088535-33088554 | None:intergenic | 25.0% |
| ! | CCTTTAATATTAACAGGTAT+TGG | + | chr4_1:33088532-33088551 | Msa0544490:intron | 25.0% |
| !!! | TTAATATTAACAGGTATTGG+AGG | + | chr4_1:33088535-33088554 | Msa0544490:intron | 25.0% |
| ! | ATAGAGTATGTAGAATTTGA+AGG | + | chr4_1:33088735-33088754 | Msa0544490:CDS | 25.0% |
| !!! | GACATTTTTTTTAGAAGCAA+AGG | - | chr4_1:33087461-33087480 | None:intergenic | 25.0% |
| !!! | TTTTAACCGGGTTTTTATTT+CGG | + | chr4_1:33087922-33087941 | Msa0544490:CDS | 25.0% |
| ! | TGGTAATATAGCTCATAATT+TGG | + | chr4_1:33087958-33087977 | Msa0544490:CDS | 25.0% |
| ! | TAATATAGCTCATAATTTGG+CGG | + | chr4_1:33087961-33087980 | Msa0544490:CDS | 25.0% |
| !! | AGTATTTGTTGCTTATTGAA+AGG | + | chr4_1:33088493-33088512 | Msa0544490:intron | 25.0% |
| ! | CCAATACCTGTTAATATTAA+AGG | - | chr4_1:33088535-33088554 | None:intergenic | 25.0% |
| ! | CCTTTAATATTAACAGGTAT+TGG | + | chr4_1:33088532-33088551 | Msa0544490:intron | 25.0% |
| !!! | TTAATATTAACAGGTATTGG+AGG | + | chr4_1:33088535-33088554 | Msa0544490:intron | 25.0% |
| ! | ATAGAGTATGTAGAATTTGA+AGG | + | chr4_1:33088735-33088754 | Msa0544490:CDS | 25.0% |
| GTTCTTCATATCTATAACGA+CGG | + | chr4_1:33087509-33087528 | Msa0544490:CDS | 30.0% | |
| ! | GTAAATGATTGGAAGCTTTT+TGG | - | chr4_1:33087672-33087691 | None:intergenic | 30.0% |
| CCAATCATTTACTACATTCA+CGG | + | chr4_1:33087680-33087699 | Msa0544490:CDS | 30.0% | |
| !!! | AAGCAGTAGTTTTGACAATT+AGG | - | chr4_1:33087737-33087756 | None:intergenic | 30.0% |
| !! | TTTAACCGGGTTTTTATTTC+GGG | + | chr4_1:33087923-33087942 | Msa0544490:CDS | 30.0% |
| ATGAGAAAGAGTTACAAACT+CGG | + | chr4_1:33088208-33088227 | Msa0544490:intron | 30.0% | |
| AATTAGACGTAATCATGTGT+CGG | + | chr4_1:33088280-33088299 | Msa0544490:intron | 30.0% | |
| ATGCAAAAAGGCTTAAGAAT+TGG | + | chr4_1:33088703-33088722 | Msa0544490:CDS | 30.0% | |
| TGCAAAAAGGCTTAAGAATT+GGG | + | chr4_1:33088704-33088723 | Msa0544490:CDS | 30.0% | |
| !!! | TCTTTTGATGGTTCTGAATT+TGG | - | chr4_1:33088789-33088808 | None:intergenic | 30.0% |
| GTTCTTCATATCTATAACGA+CGG | + | chr4_1:33087509-33087528 | Msa0544490:CDS | 30.0% | |
| ! | GTAAATGATTGGAAGCTTTT+TGG | - | chr4_1:33087672-33087691 | None:intergenic | 30.0% |
| CCAATCATTTACTACATTCA+CGG | + | chr4_1:33087680-33087699 | Msa0544490:CDS | 30.0% | |
| !!! | AAGCAGTAGTTTTGACAATT+AGG | - | chr4_1:33087737-33087756 | None:intergenic | 30.0% |
| !! | TTTAACCGGGTTTTTATTTC+GGG | + | chr4_1:33087923-33087942 | Msa0544490:CDS | 30.0% |
| ATGAGAAAGAGTTACAAACT+CGG | + | chr4_1:33088208-33088227 | Msa0544490:intron | 30.0% | |
| AATTAGACGTAATCATGTGT+CGG | + | chr4_1:33088280-33088299 | Msa0544490:intron | 30.0% | |
| ATGCAAAAAGGCTTAAGAAT+TGG | + | chr4_1:33088703-33088722 | Msa0544490:CDS | 30.0% | |
| TGCAAAAAGGCTTAAGAATT+GGG | + | chr4_1:33088704-33088723 | Msa0544490:CDS | 30.0% | |
| !!! | TCTTTTGATGGTTCTGAATT+TGG | - | chr4_1:33088789-33088808 | None:intergenic | 30.0% |
| AACATCACAGTTCAAGACAA+CGG | + | chr4_1:33087563-33087582 | Msa0544490:CDS | 35.0% | |
| ! | ATGATTGGAAGCTTTTTGGA+GGG | - | chr4_1:33087668-33087687 | None:intergenic | 35.0% |
| ! | AATGATTGGAAGCTTTTTGG+AGG | - | chr4_1:33087669-33087688 | None:intergenic | 35.0% |
| CCGTGAATGTAGTAAATGAT+TGG | - | chr4_1:33087683-33087702 | None:intergenic | 35.0% | |
| ATCATTTACTACATTCACGG+AGG | + | chr4_1:33087683-33087702 | Msa0544490:CDS | 35.0% | |
| AAACCATCTTCAATAGCACA+TGG | - | chr4_1:33087830-33087849 | None:intergenic | 35.0% | |
| TGCTATTGAAGATGGTTTCA+TGG | + | chr4_1:33087832-33087851 | Msa0544490:CDS | 35.0% | |
| !! | AAGTTGAGAAAAGCATCATC+CGG | - | chr4_1:33088097-33088116 | None:intergenic | 35.0% |
| TCAACTTGGAACTTATTGAC+AGG | + | chr4_1:33088110-33088129 | Msa0544490:CDS | 35.0% | |
| AAGAGTTACAAACTCGGAAA+CGG | + | chr4_1:33088214-33088233 | Msa0544490:intron | 35.0% | |
| GCAAAAAGGCTTAAGAATTG+GGG | + | chr4_1:33088705-33088724 | Msa0544490:CDS | 35.0% | |
| GAATTTGAAGGACAACAACA+TGG | + | chr4_1:33088747-33088766 | Msa0544490:CDS | 35.0% | |
| !! | ACCATCAAAAGAGTTGATGT+TGG | + | chr4_1:33088797-33088816 | Msa0544490:CDS | 35.0% |
| ! | ACCAACATCAACTCTTTTGA+TGG | - | chr4_1:33088801-33088820 | None:intergenic | 35.0% |
| GTATCCAAAGTGTGTTGAAT+TGG | + | chr4_1:33088930-33088949 | Msa0544490:three_prime_UTR | 35.0% | |
| AACTCCAATTCAACACACTT+TGG | - | chr4_1:33088937-33088956 | None:intergenic | 35.0% | |
| CATATGATGCAATTTGAGTC+TGG | + | chr4_1:33088973-33088992 | Msa0544490:three_prime_UTR | 35.0% | |
| AACATCACAGTTCAAGACAA+CGG | + | chr4_1:33087563-33087582 | Msa0544490:CDS | 35.0% | |
| ! | ATGATTGGAAGCTTTTTGGA+GGG | - | chr4_1:33087668-33087687 | None:intergenic | 35.0% |
| ! | AATGATTGGAAGCTTTTTGG+AGG | - | chr4_1:33087669-33087688 | None:intergenic | 35.0% |
| CCGTGAATGTAGTAAATGAT+TGG | - | chr4_1:33087683-33087702 | None:intergenic | 35.0% | |
| ATCATTTACTACATTCACGG+AGG | + | chr4_1:33087683-33087702 | Msa0544490:CDS | 35.0% | |
| AAACCATCTTCAATAGCACA+TGG | - | chr4_1:33087830-33087849 | None:intergenic | 35.0% | |
| TGCTATTGAAGATGGTTTCA+TGG | + | chr4_1:33087832-33087851 | Msa0544490:CDS | 35.0% | |
| !! | AAGTTGAGAAAAGCATCATC+CGG | - | chr4_1:33088097-33088116 | None:intergenic | 35.0% |
| TCAACTTGGAACTTATTGAC+AGG | + | chr4_1:33088110-33088129 | Msa0544490:CDS | 35.0% | |
| AAGAGTTACAAACTCGGAAA+CGG | + | chr4_1:33088214-33088233 | Msa0544490:intron | 35.0% | |
| GCAAAAAGGCTTAAGAATTG+GGG | + | chr4_1:33088705-33088724 | Msa0544490:CDS | 35.0% | |
| GAATTTGAAGGACAACAACA+TGG | + | chr4_1:33088747-33088766 | Msa0544490:CDS | 35.0% | |
| !! | ACCATCAAAAGAGTTGATGT+TGG | + | chr4_1:33088797-33088816 | Msa0544490:CDS | 35.0% |
| ! | ACCAACATCAACTCTTTTGA+TGG | - | chr4_1:33088801-33088820 | None:intergenic | 35.0% |
| GTATCCAAAGTGTGTTGAAT+TGG | + | chr4_1:33088930-33088949 | Msa0544490:three_prime_UTR | 35.0% | |
| AACTCCAATTCAACACACTT+TGG | - | chr4_1:33088937-33088956 | None:intergenic | 35.0% | |
| CATATGATGCAATTTGAGTC+TGG | + | chr4_1:33088973-33088992 | Msa0544490:three_prime_UTR | 35.0% | |
| ACTATAGTTGACGAATGTCG+TGG | + | chr4_1:33087485-33087504 | Msa0544490:CDS | 40.0% | |
| ! | TGGGTTTAAGGTTCGAACTA+TGG | - | chr4_1:33087537-33087556 | None:intergenic | 40.0% |
| GTCTTGAACTGTGATGTTGA+AGG | - | chr4_1:33087561-33087580 | None:intergenic | 40.0% | |
| ! | AAGACAACGGCACTGTTTTA+TGG | + | chr4_1:33087576-33087595 | Msa0544490:CDS | 40.0% |
| AAGGTGAAGATTGTGTGTTG+AGG | - | chr4_1:33087618-33087637 | None:intergenic | 40.0% | |
| ATTTACTACATTCACGGAGG+CGG | + | chr4_1:33087686-33087705 | Msa0544490:CDS | 40.0% | |
| ! | CTACCATGTGCTATTGAAGA+TGG | + | chr4_1:33087824-33087843 | Msa0544490:CDS | 40.0% |
| ATGGTTTCATGGCTGTTAAG+TGG | + | chr4_1:33087843-33087862 | Msa0544490:CDS | 40.0% | |
| !! | AGAAGCTTTGAAGAGTGAGA+TGG | + | chr4_1:33087874-33087893 | Msa0544490:CDS | 40.0% |
| AGTCACCCGAAATAAAAACC+CGG | - | chr4_1:33087931-33087950 | None:intergenic | 40.0% | |
| !! | GGTTTTTATTTCGGGTGACT+CGG | + | chr4_1:33087931-33087950 | Msa0544490:CDS | 40.0% |
| TAGCTCATAATTTGGCGGTT+CGG | + | chr4_1:33087966-33087985 | Msa0544490:CDS | 40.0% | |
| ! | GGTTAGGGGTTATGTTTTGT+TGG | + | chr4_1:33088024-33088043 | Msa0544490:CDS | 40.0% |
| !! | GTTTTGTTGGCACCGTTTTT+TGG | + | chr4_1:33088037-33088056 | Msa0544490:CDS | 40.0% |
| ! | GGATGATGCTTTTCTCAACT+TGG | + | chr4_1:33088096-33088115 | Msa0544490:CDS | 40.0% |
| TGATCAGTATCCTCTCCAAT+GGG | - | chr4_1:33088570-33088589 | None:intergenic | 40.0% | |
| ATGATCAGTATCCTCTCCAA+TGG | - | chr4_1:33088571-33088590 | None:intergenic | 40.0% | |
| CATCCACTTGTGAATCCATT+TGG | + | chr4_1:33088588-33088607 | Msa0544490:CDS | 40.0% | |
| CTCTTACTTCTTGGTCCAAA+TGG | - | chr4_1:33088606-33088625 | None:intergenic | 40.0% | |
| ACCAAGAAGTAAGAGTCTTG+AGG | + | chr4_1:33088611-33088630 | Msa0544490:CDS | 40.0% | |
| TCCTCAAGACTCTTACTTCT+TGG | - | chr4_1:33088615-33088634 | None:intergenic | 40.0% | |
| TGATCTTGACCCAATTCTTG+TGG | + | chr4_1:33088638-33088657 | Msa0544490:CDS | 40.0% | |
| TTTGCTTAAAGATAGGGCAG+AGG | + | chr4_1:33088677-33088696 | Msa0544490:CDS | 40.0% | |
| TGATGCAATTTGAGTCTGGT+TGG | + | chr4_1:33088977-33088996 | Msa0544490:three_prime_UTR | 40.0% | |
| ACTATAGTTGACGAATGTCG+TGG | + | chr4_1:33087485-33087504 | Msa0544490:CDS | 40.0% | |
| ! | TGGGTTTAAGGTTCGAACTA+TGG | - | chr4_1:33087537-33087556 | None:intergenic | 40.0% |
| GTCTTGAACTGTGATGTTGA+AGG | - | chr4_1:33087561-33087580 | None:intergenic | 40.0% | |
| ! | AAGACAACGGCACTGTTTTA+TGG | + | chr4_1:33087576-33087595 | Msa0544490:CDS | 40.0% |
| AAGGTGAAGATTGTGTGTTG+AGG | - | chr4_1:33087618-33087637 | None:intergenic | 40.0% | |
| ATTTACTACATTCACGGAGG+CGG | + | chr4_1:33087686-33087705 | Msa0544490:CDS | 40.0% | |
| ! | CTACCATGTGCTATTGAAGA+TGG | + | chr4_1:33087824-33087843 | Msa0544490:CDS | 40.0% |
| ATGGTTTCATGGCTGTTAAG+TGG | + | chr4_1:33087843-33087862 | Msa0544490:CDS | 40.0% | |
| !! | AGAAGCTTTGAAGAGTGAGA+TGG | + | chr4_1:33087874-33087893 | Msa0544490:CDS | 40.0% |
| AGTCACCCGAAATAAAAACC+CGG | - | chr4_1:33087931-33087950 | None:intergenic | 40.0% | |
| !! | GGTTTTTATTTCGGGTGACT+CGG | + | chr4_1:33087931-33087950 | Msa0544490:CDS | 40.0% |
| TAGCTCATAATTTGGCGGTT+CGG | + | chr4_1:33087966-33087985 | Msa0544490:CDS | 40.0% | |
| ! | GGTTAGGGGTTATGTTTTGT+TGG | + | chr4_1:33088024-33088043 | Msa0544490:CDS | 40.0% |
| !! | GTTTTGTTGGCACCGTTTTT+TGG | + | chr4_1:33088037-33088056 | Msa0544490:CDS | 40.0% |
| ! | GGATGATGCTTTTCTCAACT+TGG | + | chr4_1:33088096-33088115 | Msa0544490:CDS | 40.0% |
| TGATCAGTATCCTCTCCAAT+GGG | - | chr4_1:33088570-33088589 | None:intergenic | 40.0% | |
| ATGATCAGTATCCTCTCCAA+TGG | - | chr4_1:33088571-33088590 | None:intergenic | 40.0% | |
| CATCCACTTGTGAATCCATT+TGG | + | chr4_1:33088588-33088607 | Msa0544490:CDS | 40.0% | |
| CTCTTACTTCTTGGTCCAAA+TGG | - | chr4_1:33088606-33088625 | None:intergenic | 40.0% | |
| ACCAAGAAGTAAGAGTCTTG+AGG | + | chr4_1:33088611-33088630 | Msa0544490:CDS | 40.0% | |
| TCCTCAAGACTCTTACTTCT+TGG | - | chr4_1:33088615-33088634 | None:intergenic | 40.0% | |
| TGATCTTGACCCAATTCTTG+TGG | + | chr4_1:33088638-33088657 | Msa0544490:CDS | 40.0% | |
| TTTGCTTAAAGATAGGGCAG+AGG | + | chr4_1:33088677-33088696 | Msa0544490:CDS | 40.0% | |
| TGATGCAATTTGAGTCTGGT+TGG | + | chr4_1:33088977-33088996 | Msa0544490:three_prime_UTR | 40.0% | |
| GATGTTGAAGGCTGGGTTTA+AGG | - | chr4_1:33087549-33087568 | None:intergenic | 45.0% | |
| GAACTGTGATGTTGAAGGCT+GGG | - | chr4_1:33087556-33087575 | None:intergenic | 45.0% | |
| TGAACTGTGATGTTGAAGGC+TGG | - | chr4_1:33087557-33087576 | None:intergenic | 45.0% | |
| ! | TAGCTGGCTTATAGAGACGA+AGG | - | chr4_1:33087637-33087656 | None:intergenic | 45.0% |
| TGAAGAGTGAGATGGATCCT+TGG | + | chr4_1:33087882-33087901 | Msa0544490:CDS | 45.0% | |
| !! | GCCATGTGGCTGATTTTAAC+CGG | + | chr4_1:33087909-33087928 | Msa0544490:CDS | 45.0% |
| !! | CCATGTGGCTGATTTTAACC+GGG | + | chr4_1:33087910-33087929 | Msa0544490:CDS | 45.0% |
| ! | ATAATTTGGCGGTTCGGCTT+GGG | + | chr4_1:33087972-33087991 | Msa0544490:CDS | 45.0% |
| !!! | TTGTTGGCACCGTTTTTTGG+TGG | + | chr4_1:33088040-33088059 | Msa0544490:CDS | 45.0% |
| CTCACGGTTCCACCAAAAAA+CGG | - | chr4_1:33088052-33088071 | None:intergenic | 45.0% | |
| TGGAGGCTTTCTATACCCAT+TGG | + | chr4_1:33088552-33088571 | Msa0544490:CDS | 45.0% | |
| GCTTTCTATACCCATTGGAG+AGG | + | chr4_1:33088557-33088576 | Msa0544490:CDS | 45.0% | |
| ! | GGTCCAAATGGATTCACAAG+TGG | - | chr4_1:33088594-33088613 | None:intergenic | 45.0% |
| TCTTGACCCAATTCTTGTGG+TGG | + | chr4_1:33088641-33088660 | Msa0544490:CDS | 45.0% | |
| CTCCAACCACCACAAGAATT+GGG | - | chr4_1:33088650-33088669 | None:intergenic | 45.0% | |
| TCTCCAACCACCACAAGAAT+TGG | - | chr4_1:33088651-33088670 | None:intergenic | 45.0% | |
| GGGCAGAGGATTATGCAAAA+AGG | + | chr4_1:33088691-33088710 | Msa0544490:CDS | 45.0% | |
| GATGTTGAAGGCTGGGTTTA+AGG | - | chr4_1:33087549-33087568 | None:intergenic | 45.0% | |
| GAACTGTGATGTTGAAGGCT+GGG | - | chr4_1:33087556-33087575 | None:intergenic | 45.0% | |
| TGAACTGTGATGTTGAAGGC+TGG | - | chr4_1:33087557-33087576 | None:intergenic | 45.0% | |
| ! | TAGCTGGCTTATAGAGACGA+AGG | - | chr4_1:33087637-33087656 | None:intergenic | 45.0% |
| TGAAGAGTGAGATGGATCCT+TGG | + | chr4_1:33087882-33087901 | Msa0544490:CDS | 45.0% | |
| !! | GCCATGTGGCTGATTTTAAC+CGG | + | chr4_1:33087909-33087928 | Msa0544490:CDS | 45.0% |
| !! | CCATGTGGCTGATTTTAACC+GGG | + | chr4_1:33087910-33087929 | Msa0544490:CDS | 45.0% |
| ! | ATAATTTGGCGGTTCGGCTT+GGG | + | chr4_1:33087972-33087991 | Msa0544490:CDS | 45.0% |
| !!! | TTGTTGGCACCGTTTTTTGG+TGG | + | chr4_1:33088040-33088059 | Msa0544490:CDS | 45.0% |
| CTCACGGTTCCACCAAAAAA+CGG | - | chr4_1:33088052-33088071 | None:intergenic | 45.0% | |
| TGGAGGCTTTCTATACCCAT+TGG | + | chr4_1:33088552-33088571 | Msa0544490:CDS | 45.0% | |
| GCTTTCTATACCCATTGGAG+AGG | + | chr4_1:33088557-33088576 | Msa0544490:CDS | 45.0% | |
| ! | GGTCCAAATGGATTCACAAG+TGG | - | chr4_1:33088594-33088613 | None:intergenic | 45.0% |
| TCTTGACCCAATTCTTGTGG+TGG | + | chr4_1:33088641-33088660 | Msa0544490:CDS | 45.0% | |
| CTCCAACCACCACAAGAATT+GGG | - | chr4_1:33088650-33088669 | None:intergenic | 45.0% | |
| TCTCCAACCACCACAAGAAT+TGG | - | chr4_1:33088651-33088670 | None:intergenic | 45.0% | |
| GGGCAGAGGATTATGCAAAA+AGG | + | chr4_1:33088691-33088710 | Msa0544490:CDS | 45.0% | |
| TTGGAGGGTGATGAGTTAGC+TGG | - | chr4_1:33087653-33087672 | None:intergenic | 50.0% | |
| !! | ACCTGACTATCGACTTGCAC+CGG | + | chr4_1:33087793-33087812 | Msa0544490:CDS | 50.0% |
| !! | ATCGACTTGCACCGGAGAAT+CGG | + | chr4_1:33087801-33087820 | Msa0544490:CDS | 50.0% |
| CCCGGTTAAAATCAGCCACA+TGG | - | chr4_1:33087913-33087932 | None:intergenic | 50.0% | |
| ! | TTTATTTCGGGTGACTCGGC+TGG | + | chr4_1:33087935-33087954 | Msa0544490:CDS | 50.0% |
| ! | CATAATTTGGCGGTTCGGCT+TGG | + | chr4_1:33087971-33087990 | Msa0544490:CDS | 50.0% |
| !! | TGGGTTTGGTTCGGTTGAGT+TGG | + | chr4_1:33087991-33088010 | Msa0544490:CDS | 50.0% |
| ACATAACCCCTAACCCGAAC+CGG | - | chr4_1:33088019-33088038 | None:intergenic | 50.0% | |
| !!! | CGTTTTTTGGTGGAACCGTG+AGG | + | chr4_1:33088050-33088069 | Msa0544490:CDS | 50.0% |
| !! | AGCTTCTGACTTGGTCCTCA+CGG | - | chr4_1:33088068-33088087 | None:intergenic | 50.0% |
| AGGACCAAGTCAGAAGCTGA+AGG | + | chr4_1:33088070-33088089 | Msa0544490:CDS | 50.0% | |
| CAAGTCAGAAGCTGAAGGAC+CGG | + | chr4_1:33088075-33088094 | Msa0544490:CDS | 50.0% | |
| GACCCAATTCTTGTGGTGGT+TGG | + | chr4_1:33088645-33088664 | Msa0544490:CDS | 50.0% | |
| TTGGAGGGTGATGAGTTAGC+TGG | - | chr4_1:33087653-33087672 | None:intergenic | 50.0% | |
| !! | ACCTGACTATCGACTTGCAC+CGG | + | chr4_1:33087793-33087812 | Msa0544490:CDS | 50.0% |
| !! | ATCGACTTGCACCGGAGAAT+CGG | + | chr4_1:33087801-33087820 | Msa0544490:CDS | 50.0% |
| CCCGGTTAAAATCAGCCACA+TGG | - | chr4_1:33087913-33087932 | None:intergenic | 50.0% | |
| ! | TTTATTTCGGGTGACTCGGC+TGG | + | chr4_1:33087935-33087954 | Msa0544490:CDS | 50.0% |
| ! | CATAATTTGGCGGTTCGGCT+TGG | + | chr4_1:33087971-33087990 | Msa0544490:CDS | 50.0% |
| !! | TGGGTTTGGTTCGGTTGAGT+TGG | + | chr4_1:33087991-33088010 | Msa0544490:CDS | 50.0% |
| ACATAACCCCTAACCCGAAC+CGG | - | chr4_1:33088019-33088038 | None:intergenic | 50.0% | |
| !!! | CGTTTTTTGGTGGAACCGTG+AGG | + | chr4_1:33088050-33088069 | Msa0544490:CDS | 50.0% |
| !! | AGCTTCTGACTTGGTCCTCA+CGG | - | chr4_1:33088068-33088087 | None:intergenic | 50.0% |
| AGGACCAAGTCAGAAGCTGA+AGG | + | chr4_1:33088070-33088089 | Msa0544490:CDS | 50.0% | |
| CAAGTCAGAAGCTGAAGGAC+CGG | + | chr4_1:33088075-33088094 | Msa0544490:CDS | 50.0% | |
| GACCCAATTCTTGTGGTGGT+TGG | + | chr4_1:33088645-33088664 | Msa0544490:CDS | 50.0% | |
| !! | TCTGCATCGGCTCACGAACA+TGG | + | chr4_1:33087711-33087730 | Msa0544490:CDS | 55.0% |
| TCCGGTGCAAGTCGATAGTC+AGG | - | chr4_1:33087797-33087816 | None:intergenic | 55.0% | |
| ! | GCACATGGTAGCCGATTCTC+CGG | - | chr4_1:33087815-33087834 | None:intergenic | 55.0% |
| GGATCCTTGGTTGAGCCATG+TGG | + | chr4_1:33087895-33087914 | Msa0544490:CDS | 55.0% | |
| TCAGCCACATGGCTCAACCA+AGG | - | chr4_1:33087902-33087921 | None:intergenic | 55.0% | |
| !! | GGTTCGGCTTGGGTTTGGTT+CGG | + | chr4_1:33087982-33088001 | Msa0544490:CDS | 55.0% |
| !! | TGGTTCGGTTGAGTTGGCAC+CGG | + | chr4_1:33087997-33088016 | Msa0544490:CDS | 55.0% |
| CGGTCCTTCAGCTTCTGACT+TGG | - | chr4_1:33088077-33088096 | None:intergenic | 55.0% | |
| GGAAACGGACACTAGACACG+CGG | + | chr4_1:33088229-33088248 | Msa0544490:intron | 55.0% | |
| !! | TCTGCATCGGCTCACGAACA+TGG | + | chr4_1:33087711-33087730 | Msa0544490:CDS | 55.0% |
| TCCGGTGCAAGTCGATAGTC+AGG | - | chr4_1:33087797-33087816 | None:intergenic | 55.0% | |
| ! | GCACATGGTAGCCGATTCTC+CGG | - | chr4_1:33087815-33087834 | None:intergenic | 55.0% |
| GGATCCTTGGTTGAGCCATG+TGG | + | chr4_1:33087895-33087914 | Msa0544490:CDS | 55.0% | |
| TCAGCCACATGGCTCAACCA+AGG | - | chr4_1:33087902-33087921 | None:intergenic | 55.0% | |
| !! | GGTTCGGCTTGGGTTTGGTT+CGG | + | chr4_1:33087982-33088001 | Msa0544490:CDS | 55.0% |
| !! | TGGTTCGGTTGAGTTGGCAC+CGG | + | chr4_1:33087997-33088016 | Msa0544490:CDS | 55.0% |
| CGGTCCTTCAGCTTCTGACT+TGG | - | chr4_1:33088077-33088096 | None:intergenic | 55.0% | |
| GGAAACGGACACTAGACACG+CGG | + | chr4_1:33088229-33088248 | Msa0544490:intron | 55.0% | |
| ! | ATTTCGGGTGACTCGGCTGG+TGG | + | chr4_1:33087938-33087957 | Msa0544490:CDS | 60.0% |
| !! | TTGGCGGTTCGGCTTGGGTT+TGG | + | chr4_1:33087977-33087996 | Msa0544490:CDS | 60.0% |
| !! | CGGTTGAGTTGGCACCGGTT+CGG | + | chr4_1:33088002-33088021 | Msa0544490:CDS | 60.0% |
| !! | GGTTGAGTTGGCACCGGTTC+GGG | + | chr4_1:33088003-33088022 | Msa0544490:CDS | 60.0% |
| !! | AGTTGGCACCGGTTCGGGTT+AGG | + | chr4_1:33088008-33088027 | Msa0544490:CDS | 60.0% |
| !! | GTTGGCACCGGTTCGGGTTA+GGG | + | chr4_1:33088009-33088028 | Msa0544490:CDS | 60.0% |
| !! | TTGGCACCGGTTCGGGTTAG+GGG | + | chr4_1:33088010-33088029 | Msa0544490:CDS | 60.0% |
| ! | ATTTCGGGTGACTCGGCTGG+TGG | + | chr4_1:33087938-33087957 | Msa0544490:CDS | 60.0% |
| !! | TTGGCGGTTCGGCTTGGGTT+TGG | + | chr4_1:33087977-33087996 | Msa0544490:CDS | 60.0% |
| !! | CGGTTGAGTTGGCACCGGTT+CGG | + | chr4_1:33088002-33088021 | Msa0544490:CDS | 60.0% |
| !! | GGTTGAGTTGGCACCGGTTC+GGG | + | chr4_1:33088003-33088022 | Msa0544490:CDS | 60.0% |
| !! | AGTTGGCACCGGTTCGGGTT+AGG | + | chr4_1:33088008-33088027 | Msa0544490:CDS | 60.0% |
| !! | GTTGGCACCGGTTCGGGTTA+GGG | + | chr4_1:33088009-33088028 | Msa0544490:CDS | 60.0% |
| !! | TTGGCACCGGTTCGGGTTAG+GGG | + | chr4_1:33088010-33088029 | Msa0544490:CDS | 60.0% |
| CACGGAGGCGGCTTCTGCAT+CGG | + | chr4_1:33087698-33087717 | Msa0544490:CDS | 65.0% | |
| CACGGAGGCGGCTTCTGCAT+CGG | + | chr4_1:33087698-33087717 | Msa0544490:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 33087449 | 33089008 | 33087449 | ID=Msa0544490;Name=Msa0544490 |
| chr4_1 | mRNA | 33087449 | 33089008 | 33087449 | ID=Msa0544490-mRNA-1;Parent=Msa0544490;Name=Msa0544490-mRNA-1;_AED=0.01;_eAED=0.01;_QI=27|1|1|1|1|1|2|160|318 |
| chr4_1 | exon | 33087449 | 33088131 | 33087449 | ID=Msa0544490-mRNA-1:exon:8438;Parent=Msa0544490-mRNA-1 |
| chr4_1 | exon | 33088548 | 33089008 | 33088548 | ID=Msa0544490-mRNA-1:exon:8439;Parent=Msa0544490-mRNA-1 |
| chr4_1 | five_prime_UTR | 33087449 | 33087475 | 33087449 | ID=Msa0544490-mRNA-1:five_prime_utr;Parent=Msa0544490-mRNA-1 |
| chr4_1 | CDS | 33087476 | 33088131 | 33087476 | ID=Msa0544490-mRNA-1:cds;Parent=Msa0544490-mRNA-1 |
| chr4_1 | CDS | 33088548 | 33088848 | 33088548 | ID=Msa0544490-mRNA-1:cds;Parent=Msa0544490-mRNA-1 |
| chr4_1 | three_prime_UTR | 33088849 | 33089008 | 33088849 | ID=Msa0544490-mRNA-1:three_prime_utr;Parent=Msa0544490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
