AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0644560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0644560 MtrunA17_Chr4g0031901 84.157 587 20 6 1 516 1 585 0.0 957
Msa0644560 MtrunA17_Chr7g0238351 61.644 584 137 10 14 516 4 581 0.0 696
Msa0644560 MtrunA17_Chr7g0237441 59.831 590 147 8 7 516 1 580 0.0 687
Msa0644560 MtrunA17_Chr7g0237491 60.374 588 143 9 11 516 1 580 0.0 678
Msa0644560 MtrunA17_Chr7g0238941 66.599 491 115 5 72 516 91 578 0.0 670
Msa0644560 MtrunA17_Chr7g0238981 55.655 557 167 7 37 516 40 593 0.0 615
Msa0644560 MtrunA17_Chr4g0005921 48.770 488 196 6 72 516 81 557 2.22e-160 467
Msa0644560 MtrunA17_Chr5g0404341 48.057 489 197 7 72 516 91 566 1.55e-159 465
Msa0644560 MtrunA17_Chr5g0429511 47.853 489 197 8 72 516 84 558 2.89e-158 461
Msa0644560 MtrunA17_Chr3g0104061 47.951 488 197 7 72 516 83 556 4.81e-158 461
Msa0644560 MtrunA17_Chr5g0437681 47.782 496 199 10 72 516 81 567 1.54e-154 452
Msa0644560 MtrunA17_Chr5g0404361 42.708 576 241 11 14 516 52 611 3.93e-153 450
Msa0644560 MtrunA17_Chr3g0114211 48.178 494 194 11 72 516 90 570 1.76e-151 445
Msa0644560 MtrunA17_Chr5g0436461 46.516 488 204 6 72 516 81 554 4.82e-151 443
Msa0644560 MtrunA17_Chr5g0431581 45.951 494 203 12 72 516 82 560 9.20e-134 399
Msa0644560 MtrunA17_Chr8g0346581 43.522 494 217 10 72 516 91 571 6.69e-129 387
Msa0644560 MtrunA17_Chr7g0240991 40.845 497 235 9 72 516 82 571 4.28e-123 372
Msa0644560 MtrunA17_Chr4g0008521 41.600 500 227 9 72 516 83 572 3.46e-122 370
Msa0644560 MtrunA17_Chr2g0278811 37.958 519 242 7 72 516 95 607 1.18e-121 369
Msa0644560 MtrunA17_Chr7g0240971 42.600 500 221 12 72 516 82 570 4.14e-116 354
Msa0644560 MtrunA17_Chr3g0133861 35.736 333 157 11 216 500 1 324 1.66e-49 173
Msa0644560 MtrunA17_Chr3g0133871 52.308 130 62 0 72 201 89 218 1.50e-42 151
Msa0644560 MtrunA17_Chr5g0436431 40.854 164 88 3 313 475 32 187 9.28e-35 130
Msa0644560 MtrunA17_Chr4g0056511 27.765 425 247 14 73 476 85 470 7.02e-32 129
Msa0644560 MtrunA17_Chr3g0118321 27.935 494 245 20 72 490 84 541 3.00e-30 124
Msa0644560 MtrunA17_Chr3g0118331 27.821 514 252 23 72 507 83 555 5.49e-30 123
Msa0644560 MtrunA17_Chr3g0079321 26.761 426 250 16 73 476 87 472 1.54e-26 113
Msa0644560 MtrunA17_Chr8g0382691 26.172 512 260 22 72 507 92 561 1.28e-24 107
Msa0644560 MtrunA17_Chr7g0234061 26.682 431 244 19 72 476 86 470 1.79e-23 104
Msa0644560 MtrunA17_Chr1g0157341 24.939 409 262 14 72 476 86 453 1.41e-18 89.0
Msa0644560 MtrunA17_Chr3g0121161 29.646 226 148 7 72 296 123 338 2.44e-17 85.1
Msa0644560 MtrunA17_Chr3g0121151 29.646 226 148 7 72 296 123 338 3.02e-17 84.7
Msa0644560 MtrunA17_Chr3g0143671 23.077 429 245 14 72 476 87 454 3.42e-17 84.3
Msa0644560 MtrunA17_Chr3g0121171 29.646 226 148 7 72 296 1233 1448 3.83e-17 85.5
Msa0644560 MtrunA17_Chr3g0121171 29.114 237 157 7 72 307 658 884 4.21e-17 85.1
Msa0644560 MtrunA17_Chr3g0121171 25.424 413 262 15 72 476 83 457 6.29e-17 84.7
Msa0644560 MtrunA17_Chr3g0121171 28.692 237 158 7 72 307 1799 2025 9.31e-16 80.9
Msa0644560 MtrunA17_Chr4g0043261 29.237 236 152 8 73 307 83 304 7.90e-17 83.6
Msa0644560 MtrunA17_Chr4g0043251 29.114 237 155 8 73 307 85 310 8.00e-17 83.6
Msa0644560 MtrunA17_Chr4g0024861 28.910 211 138 5 72 281 84 283 9.35e-17 83.2
Msa0644560 MtrunA17_Chr5g0402831 25.000 404 258 14 72 474 88 447 1.65e-15 79.3
Msa0644560 MtrunA17_Chr4g0038671 23.333 420 254 15 72 476 87 453 4.00e-15 78.2
Msa0644560 MtrunA17_Chr2g0322441 28.910 211 138 5 72 281 87 286 2.94e-14 75.5
Msa0644560 MtrunA17_Chr8g0374271 25.316 237 159 6 72 307 88 307 8.95e-13 70.5
Msa0644560 MtrunA17_Chr3g0118351 25.937 347 168 13 226 507 5 327 2.53e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0644560 AT2G29130.1 59.201 576 150 9 15 516 9 573 0.0 667
Msa0644560 AT5G60020.1 65.462 498 117 6 72 516 82 577 0.0 663
Msa0644560 AT5G60020.3 65.462 498 117 6 72 516 50 545 0.0 662
Msa0644560 AT5G60020.2 71.014 414 107 5 72 474 82 493 0.0 608
Msa0644560 AT2G38080.1 48.255 487 198 5 72 516 84 558 3.99e-160 467
Msa0644560 AT5G05390.1 48.837 516 200 12 51 516 64 565 1.72e-156 457
Msa0644560 AT2G40370.1 47.921 505 193 11 72 516 86 580 1.44e-153 451
Msa0644560 AT5G03260.1 47.755 490 196 9 72 516 83 557 2.95e-152 446
Msa0644560 AT5G01190.1 46.830 489 204 7 72 516 82 558 4.00e-152 446
Msa0644560 AT5G01190.2 46.830 489 204 7 72 516 68 544 4.57e-152 446
Msa0644560 AT5G58910.2 45.418 491 212 7 72 516 87 567 6.27e-149 438
Msa0644560 AT5G58910.3 45.418 491 212 7 72 516 86 566 6.70e-149 438
Msa0644560 AT5G58910.1 44.835 484 211 7 79 516 50 523 1.20e-143 423
Msa0644560 AT2G30210.1 46.169 496 206 10 72 516 85 570 4.38e-143 424
Msa0644560 AT1G18140.1 44.821 502 214 11 72 516 86 581 2.03e-142 422
Msa0644560 AT5G07130.1 45.582 498 209 12 72 516 81 569 2.78e-132 396
Msa0644560 AT2G46570.2 40.927 496 227 10 72 516 4 484 3.86e-130 387
Msa0644560 AT2G46570.1 40.927 496 227 10 72 516 89 569 1.68e-129 389
Msa0644560 AT5G07130.2 45.233 493 208 12 77 516 1 484 1.02e-128 384
Msa0644560 AT5G07130.3 45.233 493 208 12 77 516 1 484 1.02e-128 384
Msa0644560 AT5G09360.1 40.365 493 230 12 72 516 93 569 5.74e-121 367
Msa0644560 AT3G09220.1 42.469 478 215 8 72 499 83 550 6.93e-121 367
Msa0644560 AT3G09220.2 42.424 462 206 8 88 499 2 453 6.89e-116 350
Msa0644560 AT5G01050.1 39.479 499 233 11 72 516 85 568 1.60e-112 345
Msa0644560 AT5G48100.1 39.918 486 230 10 72 506 79 553 1.63e-112 345
Msa0644560 AT5G01040.1 39.235 497 235 11 72 516 85 566 2.21e-110 340
Msa0644560 AT5G21105.1 28.235 510 259 18 72 506 96 573 5.61e-37 144
Msa0644560 AT5G21100.1 25.532 517 263 18 72 506 82 558 1.79e-35 140
Msa0644560 AT5G21105.3 30.805 435 235 19 72 474 96 496 3.08e-35 139
Msa0644560 AT4G25240.2 27.103 428 245 15 73 476 87 471 7.01e-30 124
Msa0644560 AT4G25240.1 27.103 428 245 15 73 476 87 471 7.01e-30 124
Msa0644560 AT5G51480.1 26.464 427 250 15 73 476 86 471 3.73e-28 118
Msa0644560 AT4G39830.1 27.169 438 251 17 72 474 94 498 1.59e-27 116
Msa0644560 AT4G12420.1 26.056 426 255 14 72 476 82 468 6.26e-26 112
Msa0644560 AT4G12420.2 26.056 426 255 14 72 476 82 468 6.26e-26 112
Msa0644560 AT4G39830.2 26.376 436 249 16 76 474 3 403 1.27e-24 107
Msa0644560 AT1G75790.1 27.696 408 251 16 72 474 84 452 1.31e-24 107
Msa0644560 AT4G39830.3 26.450 431 245 16 81 474 6 401 3.62e-24 105
Msa0644560 AT5G48450.2 26.895 409 263 16 72 476 86 462 6.65e-23 102
Msa0644560 AT5G48450.1 27.251 411 259 17 72 476 86 462 1.06e-22 102
Msa0644560 AT5G21105.2 27.298 359 183 11 199 506 51 382 9.75e-21 94.7
Msa0644560 AT4G39830.4 25.287 435 242 15 76 474 3 390 3.38e-20 94.0
Msa0644560 AT1G55560.1 30.085 236 154 7 73 307 84 309 2.99e-19 91.3
Msa0644560 AT1G21850.1 23.389 419 252 14 73 476 87 451 5.78e-19 90.5
Msa0644560 AT1G21860.1 28.319 226 145 6 72 296 86 295 4.64e-18 87.8
Msa0644560 AT3G13390.1 25.182 413 264 14 72 476 85 460 9.34e-17 83.6
Msa0644560 AT1G55570.1 28.390 236 158 7 73 307 87 312 1.22e-16 83.2
Msa0644560 AT3G13400.2 27.966 236 159 7 73 307 85 310 4.86e-16 81.3
Msa0644560 AT3G13400.1 27.966 236 159 7 73 307 85 310 4.86e-16 81.3
Msa0644560 AT5G66920.1 23.415 410 259 13 72 474 94 455 8.68e-16 80.5
Msa0644560 AT4G37160.2 27.273 209 140 4 72 279 88 285 9.05e-16 80.1
Msa0644560 AT4G37160.1 27.273 209 140 4 72 279 88 285 2.15e-15 79.3
Msa0644560 AT1G76160.1 24.048 420 251 16 72 476 85 451 3.59e-15 78.6
Msa0644560 AT1G41830.1 23.529 408 268 14 72 476 86 452 2.82e-14 75.9
Msa0644560 AT2G23630.1 23.902 410 268 13 72 478 87 455 6.22e-13 71.6
Msa0644560 AT2G23630.2 23.902 410 268 13 72 478 92 460 6.39e-13 71.6
Msa0644560 AT4G22010.1 24.528 424 246 19 72 476 83 451 6.68e-13 71.6

Find 143 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATTTCCATGTAAATTTA+AGG 0.077214 4_3:-48573431 Msa0644560:three_prime_UTR
GGCACATTTGCAGGGTATTT+TGG 0.173773 4_3:+48574580 None:intergenic
TCTGATGCCTACACCATTAA+TGG 0.176037 4_3:-48575596 Msa0644560:CDS
ATTGCAGGATACAAGCATTT+TGG 0.187461 4_3:-48574242 Msa0644560:CDS
TTTGAATTTGAACTATTATT+TGG 0.212461 4_3:+48574478 None:intergenic
CAACATTTGGGGAGATCTTT+AGG 0.221897 4_3:+48573521 None:intergenic
CTTCTCCAACAACATTTCTT+TGG 0.228697 4_3:-48574406 Msa0644560:CDS
CATGTAAATTTAAGGATTTA+TGG 0.246154 4_3:-48573423 Msa0644560:three_prime_UTR
CATTTCTTTGGAACTAATAA+TGG 0.256030 4_3:-48574394 Msa0644560:CDS
AACCTCCCCTGGATTTGTTT+TGG 0.259173 4_3:-48576755 Msa0644560:CDS
GTTTGTTTAGTAAGGAAAAT+TGG 0.292787 4_3:+48573476 None:intergenic
AATATCATTGTACTTACTTA+AGG 0.293923 4_3:-48573243 Msa0644560:three_prime_UTR
TAACTCTGACCTGTTTGAAT+TGG 0.297459 4_3:+48576045 None:intergenic
CTTTGATGTGCACCTTAGTT+GGG 0.302601 4_3:-48573606 Msa0644560:CDS
TTGGTATAGTAATCAACATT+TGG 0.308180 4_3:+48573508 None:intergenic
AATGTGGCATTTGGGTAATT+TGG 0.312994 4_3:+48574796 None:intergenic
TACACCATTAATGGGTTTCC+TGG 0.319870 4_3:-48575587 Msa0644560:CDS
TGGTATAGTAATCAACATTT+GGG 0.326918 4_3:+48573509 None:intergenic
AGTCATCCTTTGCATCTTCA+TGG 0.334535 4_3:-48574211 Msa0644560:CDS
AAGGAAGTCCCCATTCTCTT+TGG 0.338186 4_3:-48575883 Msa0644560:intron
ACCTGAACTCTAGTGTTATA+TGG 0.345887 4_3:+48574268 None:intergenic
GCTTGTGCAATTACAGCTTC+AGG 0.346802 4_3:+48575647 None:intergenic
TCCTTAAATTTACATGGAAA+TGG 0.350319 4_3:+48573430 None:intergenic
TGGTTAAGAGCTACTGTCTA+TGG 0.350969 4_3:-48575961 Msa0644560:CDS
TTACTAACCAAAGTATTGTT+TGG 0.352391 4_3:+48574313 None:intergenic
ATATCATTGTACTTACTTAA+GGG 0.353683 4_3:-48573242 Msa0644560:three_prime_UTR
AAATCAAAAGGTGTAGAAAA+AGG 0.353919 4_3:+48573454 None:intergenic
GGATTTAATTTCTTTGTTGT+TGG 0.356145 4_3:-48574190 Msa0644560:CDS
GGTGCTTGCCACTTCGTCTA+TGG 0.369971 4_3:+48573095 None:intergenic
CTGATGCCTACACCATTAAT+GGG 0.371595 4_3:-48575595 Msa0644560:CDS
TATTTGGTCCTTGACAAGTT+TGG 0.374143 4_3:+48574494 None:intergenic
AGGTCCAGGAAACCCATTAA+TGG 0.377126 4_3:+48575583 None:intergenic
AACTCTGACCTGTTTGAATT+GGG 0.379719 4_3:+48576046 None:intergenic
AACAAAATTAGTATCATTGA+TGG 0.379750 4_3:+48574639 None:intergenic
AGCATGTAGAATGTGGCATT+TGG 0.380488 4_3:+48574787 None:intergenic
GACAAAGAGGAACTCTCTTC+TGG 0.381182 4_3:-48575999 Msa0644560:CDS
AAAAGCATGGTTACCGTGAA+TGG 0.383433 4_3:-48576504 Msa0644560:CDS
GTACCCTGCCCTGTGAAATA+TGG 0.385825 4_3:+48574757 None:intergenic
CATAAATCCTTAAATTTACA+TGG 0.392188 4_3:+48573424 None:intergenic
TAGAGTTCAGGTTATATTGC+AGG 0.393539 4_3:-48574257 Msa0644560:CDS
TACCGTGAATGGGAAGTTCC+CGG 0.400570 4_3:-48576493 Msa0644560:CDS
GAGAATGGGGACTTCCTTGT+AGG 0.406530 4_3:+48575888 None:intergenic
GTGTAGGCATCAGAAACATT+TGG 0.413299 4_3:+48575605 None:intergenic
GCATGTAGAATGTGGCATTT+GGG 0.416680 4_3:+48574788 None:intergenic
ACCTTCCTCTTAACCTCCCC+TGG 0.418136 4_3:-48576766 Msa0644560:CDS
GTTGGGGATTGAGGATGGCT+TGG 0.419155 4_3:-48573589 Msa0644560:CDS
ACCATATAACACTAGAGTTC+AGG 0.422189 4_3:-48574269 Msa0644560:CDS
GTATAGTTAAACGGCCTTAA+CGG 0.423945 4_3:+48574346 None:intergenic
TTCGACAATTCCACAGTAGC+TGG 0.425573 4_3:-48574733 Msa0644560:CDS
AACTATCTTCTACTCATTCA+AGG 0.428671 4_3:-48576863 Msa0644560:five_prime_UTR
AATGAGTAGAAGATAGTTGA+AGG 0.430783 4_3:+48576868 None:intergenic
AATTTCTTTGTTGTTGGTCA+AGG 0.431250 4_3:-48574184 Msa0644560:intron
ACTTTGATGTGCACCTTAGT+TGG 0.431652 4_3:-48573607 Msa0644560:CDS
TTAAGGCCGTTTAACTATAC+AGG 0.432215 4_3:-48574343 Msa0644560:CDS
AACAATACTTTGGTTAGTAA+TGG 0.432888 4_3:-48574310 Msa0644560:CDS
GATAAGATTCATTGTGCCTT+GGG 0.433565 4_3:+48575923 None:intergenic
CAAATCCAGGGGAGGTTAAG+AGG 0.435761 4_3:+48576761 None:intergenic
GTGTACAACTTCACCATTGT+TGG 0.440870 4_3:-48576021 Msa0644560:CDS
TTCATATGTACCAAAGAGAA+TGG 0.444243 4_3:+48575873 None:intergenic
AACGGCCTTAACGGTACAAC+CGG 0.445112 4_3:+48574355 None:intergenic
TGTAGGCATCAGAAACATTT+GGG 0.450843 4_3:+48575606 None:intergenic
GCCGGACACACTTCACTCTC+TGG 0.457761 4_3:+48573375 None:intergenic
AACTCCTCCAAACAATACTT+TGG 0.459111 4_3:-48574320 Msa0644560:CDS
TGCACCTTAGTTGGGGATTG+AGG 0.460367 4_3:-48573598 Msa0644560:CDS
GGATAAGATTCATTGTGCCT+TGG 0.462220 4_3:+48575922 None:intergenic
GGAAAATTGGCAGAGTCAAT+TGG 0.468806 4_3:+48573489 None:intergenic
CCTTAGTTGGGGATTGAGGA+TGG 0.469162 4_3:-48573594 Msa0644560:CDS
CATGGAAATGGAAAATCAAA+AGG 0.469841 4_3:+48573442 None:intergenic
TCATTGATGGCTGGAAGCAC+AGG 0.471762 4_3:+48574652 None:intergenic
GGAGTTCCTGTATAGTTAAA+CGG 0.473322 4_3:+48574337 None:intergenic
TCATATGTACCAAAGAGAAT+GGG 0.475158 4_3:+48575874 None:intergenic
TCTGGCATGCTCATTTCTCA+TGG 0.475847 4_3:-48575981 Msa0644560:CDS
TAGTTCCAAAGAAATGTTGT+TGG 0.480695 4_3:+48574401 None:intergenic
ATTGCACAAGCTCTGCAGAC+AGG 0.483287 4_3:-48575635 Msa0644560:CDS
ACTCAATGCCCAATTCAAAC+AGG 0.483829 4_3:-48576054 Msa0644560:CDS
GAAGTAGCCAAAACAAATCC+AGG 0.492773 4_3:+48576748 None:intergenic
TTCACCATTGTTGGACAAAG+AGG 0.495747 4_3:-48576012 Msa0644560:CDS
GGGCATTGAGTTATGTATGA+TGG 0.498399 4_3:+48576066 None:intergenic
TGATACAATGAAAGAAAGAC+TGG 0.498850 4_3:+48573335 None:intergenic
TGGTCCAAGTATGATGGTAT+TGG 0.499764 4_3:+48574852 None:intergenic
GCCAGAGAGTGAAGTGTGTC+CGG 0.502485 4_3:-48573376 Msa0644560:three_prime_UTR
GTATGGTTGAAACAGGTGTT+TGG 0.506981 4_3:-48573643 Msa0644560:intron
ACCCGGGAACTTCCCATTCA+CGG 0.507216 4_3:+48576491 None:intergenic
GAGCAATTGTAAAGAGGTCC+AGG 0.507787 4_3:+48575569 None:intergenic
CTTCGTAGTGGTTGGTCGGA+TGG 0.508027 4_3:-48576090 Msa0644560:CDS
TGTTGGAGAAGTGCTATAGA+AGG 0.510179 4_3:+48574418 None:intergenic
CCTCTTTACAATTGCTCCAA+AGG 0.511152 4_3:-48575563 Msa0644560:intron
AAAGCATGGTTACCGTGAAT+GGG 0.513288 4_3:-48576503 Msa0644560:CDS
ATGGCTTGGATTGTTGAGGA+TGG 0.516858 4_3:-48573575 Msa0644560:CDS
ATTCATTGTGCCTTGGGAGA+AGG 0.517082 4_3:+48575929 None:intergenic
AGAATGGGGACTTCCTTGTA+GGG 0.517590 4_3:+48575889 None:intergenic
TTTGATGTGCACCTTAGTTG+GGG 0.517799 4_3:-48573605 Msa0644560:CDS
TAGACCATATTTCACAGGGC+AGG 0.518387 4_3:-48574761 Msa0644560:CDS
GACAGATACATACAAATTGA+AGG 0.527305 4_3:-48575004 Msa0644560:intron
CTAGCTAGACCATATTTCAC+AGG 0.529517 4_3:-48574766 Msa0644560:CDS
TACAAATTGAAGGTGAAGCC+AGG 0.530121 4_3:-48574994 Msa0644560:CDS
GAGGATGGCTTGGATTGTTG+AGG 0.530967 4_3:-48573579 Msa0644560:CDS
GGGAGATCTTTAGGAGGAGG+AGG 0.535117 4_3:+48573530 None:intergenic
TTGGGGAGATCTTTAGGAGG+AGG 0.536815 4_3:+48573527 None:intergenic
AGAACATTTGTGGTTTGACC+TGG 0.536892 4_3:+48574832 None:intergenic
CTAACCAAAGTATTGTTTGG+AGG 0.538509 4_3:+48574316 None:intergenic
TTGCACAAGCTCTGCAGACA+GGG 0.538737 4_3:-48575634 Msa0644560:CDS
ACCGTGAATGGGAAGTTCCC+GGG 0.543276 4_3:-48576492 Msa0644560:intron
GAGTCCAATACCATCATACT+TGG 0.543746 4_3:-48574856 Msa0644560:CDS
CCATCCTCAATCCCCAACTA+AGG 0.552441 4_3:+48573594 None:intergenic
CCTTTGGAGCAATTGTAAAG+AGG 0.556173 4_3:+48575563 None:intergenic
TCTGCAGATAAGGTTGGCAA+AGG 0.561585 4_3:-48576547 Msa0644560:intron
TGTCACTGTTCCATTATCAA+AGG 0.562747 4_3:-48576818 Msa0644560:CDS
GAATCATCATATACTAGTGC+CGG 0.571850 4_3:+48573357 None:intergenic
TGAGACAACTTCGTAGTGGT+TGG 0.574177 4_3:-48576098 Msa0644560:CDS
TTAAATCCATGAAGATGCAA+AGG 0.575251 4_3:+48574205 None:intergenic
TTCTAAAATTCCAGCTACTG+TGG 0.577452 4_3:+48574723 None:intergenic
AGGAAACCCATTAATGGTGT+AGG 0.579472 4_3:+48575589 None:intergenic
AAATTAGTATCATTGATGGC+TGG 0.579956 4_3:+48574643 None:intergenic
TTGACCTGGTCCAAGTATGA+TGG 0.586103 4_3:+48574846 None:intergenic
GACCTCTCATCCTTCTCCCA+AGG 0.596454 4_3:-48575939 Msa0644560:CDS
TCCAGGGGAGGTTAAGAGGA+AGG 0.601150 4_3:+48576765 None:intergenic
ACAACTTCGTAGTGGTTGGT+CGG 0.604046 4_3:-48576094 Msa0644560:CDS
AAGTAGCCAAAACAAATCCA+GGG 0.606149 4_3:+48576749 None:intergenic
AGTTCCTCTTTGTCCAACAA+TGG 0.608427 4_3:+48576008 None:intergenic
CATTTGGGGAGATCTTTAGG+AGG 0.612995 4_3:+48573524 None:intergenic
AGACCATATTTCACAGGGCA+GGG 0.613998 4_3:-48574760 Msa0644560:CDS
GGCACAGTATATGCAAAATG+TGG 0.642341 4_3:+48573396 None:intergenic
TGCCTTGGGAGAAGGATGAG+AGG 0.645507 4_3:+48575937 None:intergenic
ATGATGGTATTGGACTCGAA+TGG 0.647830 4_3:+48574862 None:intergenic
CATATGTACCAAAGAGAATG+GGG 0.650276 4_3:+48575875 None:intergenic
TGGACTAGTTCCTAGTCCAA+CGG 0.652330 4_3:+48574528 None:intergenic
GACAAATATGCATAGGTGAG+TGG 0.653174 4_3:-48575682 Msa0644560:intron
AGCCAAAACAAATCCAGGGG+AGG 0.654034 4_3:+48576753 None:intergenic
AAATATGCATAGGTGAGTGG+TGG 0.659012 4_3:-48575679 Msa0644560:intron
TCTAGCTAGCATGTAGAATG+TGG 0.659413 4_3:+48574780 None:intergenic
TGCACAAGCTCTGCAGACAG+GGG 0.660853 4_3:-48575633 Msa0644560:CDS
GGTATAGTAATCAACATTTG+GGG 0.664422 4_3:+48573510 None:intergenic
TAAGGTTGGCAAAGGTTACG+AGG 0.665174 4_3:-48576539 Msa0644560:intron
AAGATGCATCTGCTTCGACA+AGG 0.668532 4_3:+48574893 None:intergenic
GCACAAGCTCTGCAGACAGG+GGG 0.670081 4_3:-48575632 Msa0644560:CDS
TAGCTAGACCATATTTCACA+GGG 0.683532 4_3:-48574765 Msa0644560:CDS
AATACCATCATACTTGGACC+AGG 0.697209 4_3:-48574850 Msa0644560:CDS
TAGTAATGGAACAAAGACAG+TGG 0.719057 4_3:-48574296 Msa0644560:CDS
AGTAGCCAAAACAAATCCAG+GGG 0.722267 4_3:+48576750 None:intergenic
AGGGGAGGTTAAGAGGAAGG+TGG 0.734018 4_3:+48576768 None:intergenic
GGTGTGAGACAACTTCGTAG+TGG 0.741558 4_3:-48576102 Msa0644560:CDS
TATCTTCTACTCATTCAAGG+TGG 0.745577 4_3:-48576860 Msa0644560:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTATAAATTTATACTG+AGG + chr4_3:48574162-48574181 None:intergenic 10.0%
!! ACTATATGATATATAATATT+TGG + chr4_3:48576232-48576251 None:intergenic 10.0%
!! AAAAAAATATACGATATGAA+AGG - chr4_3:48574272-48574291 Msa0644560:CDS 15.0%
!!! TTTTTATTTGTTTGATCATT+TGG + chr4_3:48575313-48575332 None:intergenic 15.0%
!! TTTGAATTTGAACTATTATT+TGG + chr4_3:48575526-48575545 None:intergenic 15.0%
!! TCAAGTGATAAATATTTGAA+AGG + chr4_3:48573347-48573366 None:intergenic 20.0%
!! ACTACATATGTTATACAATT+TGG + chr4_3:48573389-48573408 None:intergenic 20.0%
!!! TTTTATTATTTCTGCAGATA+AGG - chr4_3:48573444-48573463 Msa0644560:three_prime_UTR 20.0%
!! AATAATTCATTTGATGCATA+TGG + chr4_3:48573827-48573846 None:intergenic 20.0%
!! TGTACTAATATTGACAATAA+TGG - chr4_3:48573846-48573865 Msa0644560:intron 20.0%
!!! AACATTTTTTTTATCCTAAG+TGG + chr4_3:48574824-48574843 None:intergenic 20.0%
!!! AAATTAGTTTGTAAAATGAG+AGG + chr4_3:48574872-48574891 None:intergenic 20.0%
!!! TTTTTGAAAGATGAATTGAT+TGG - chr4_3:48574957-48574976 Msa0644560:CDS 20.0%
!!! AGTTTTTAATAGAACATTTG+TGG + chr4_3:48575182-48575201 None:intergenic 20.0%
!! AACAAAATTAGTATCATTGA+TGG + chr4_3:48575365-48575384 None:intergenic 20.0%
!!! AAGTTTTTGTCAATAGTTTT+AGG + chr4_3:48575445-48575464 None:intergenic 20.0%
!!! AACTAATAATGGTTTTACAA+CGG - chr4_3:48575618-48575637 Msa0644560:CDS 20.0%
!! ATAGCAAATAGATCAAAAAA+AGG + chr4_3:48576334-48576353 None:intergenic 20.0%
!! CATAAATCCTTAAATTTACA+TGG + chr4_3:48576580-48576599 None:intergenic 20.0%
!! CATGTAAATTTAAGGATTTA+TGG - chr4_3:48576578-48576597 Msa0644560:intron 20.0%
!! AATATCATTGTACTTACTTA+AGG - chr4_3:48576758-48576777 Msa0644560:CDS 20.0%
!! ATATCATTGTACTTACTTAA+GGG - chr4_3:48576759-48576778 Msa0644560:CDS 20.0%
! CATATGTTATACAATTTGGT+AGG + chr4_3:48573385-48573404 None:intergenic 25.0%
!!! AAACTAAGTGTTGAGAAAAT+AGG - chr4_3:48573674-48573693 Msa0644560:intron 25.0%
! ATATTGTATGTTGTACATCA+TGG - chr4_3:48573786-48573805 Msa0644560:intron 25.0%
!!! TGGTATTTTATATTTCTAGC+TGG - chr4_3:48574197-48574216 Msa0644560:CDS 25.0%
!!! CTGGAGTTTATACTTTTTTA+AGG - chr4_3:48574216-48574235 Msa0644560:CDS 25.0%
! TATCTTTGACAAATATGCAT+AGG - chr4_3:48574312-48574331 Msa0644560:CDS 25.0%
! ACTAGAATTGATGAATTGAT+TGG - chr4_3:48574926-48574945 Msa0644560:CDS 25.0%
!!! ATTGGTTTGTTATCATATCA+TGG - chr4_3:48574975-48574994 Msa0644560:CDS 25.0%
!!! AAAAACTTTTTCTTTACCGT+TGG - chr4_3:48575457-48575476 Msa0644560:intron 25.0%
!!! CATTTCTTTGGAACTAATAA+TGG - chr4_3:48575607-48575626 Msa0644560:CDS 25.0%
!!! TTACTAACCAAAGTATTGTT+TGG + chr4_3:48575691-48575710 None:intergenic 25.0%
! AACAATACTTTGGTTAGTAA+TGG - chr4_3:48575691-48575710 Msa0644560:intron 25.0%
!! GGATTTAATTTCTTTGTTGT+TGG - chr4_3:48575811-48575830 Msa0644560:intron 25.0%
!! ACTATTTTCATAAACTATCC+TGG - chr4_3:48576089-48576108 Msa0644560:CDS 25.0%
!!! ATCTATTTGCTATGAATGTA+TGG - chr4_3:48576341-48576360 Msa0644560:intron 25.0%
! TGGTATAGTAATCAACATTT+GGG + chr4_3:48576495-48576514 None:intergenic 25.0%
! TTGGTATAGTAATCAACATT+TGG + chr4_3:48576496-48576515 None:intergenic 25.0%
! GTTTGTTTAGTAAGGAAAAT+TGG + chr4_3:48576528-48576547 None:intergenic 25.0%
!! AGAAAAAGGTTTGTTTAGTA+AGG + chr4_3:48576536-48576555 None:intergenic 25.0%
!! AAATCAAAAGGTGTAGAAAA+AGG + chr4_3:48576550-48576569 None:intergenic 25.0%
! TCCATTTCCATGTAAATTTA+AGG - chr4_3:48576570-48576589 Msa0644560:intron 25.0%
! TCCTTAAATTTACATGGAAA+TGG + chr4_3:48576574-48576593 None:intergenic 25.0%
!!! TTTTTGGTCACTTGAAAATT+AGG + chr4_3:48576705-48576724 None:intergenic 25.0%
! TTCAAGTGACCAAAAAATAA+AGG - chr4_3:48576709-48576728 Msa0644560:intron 25.0%
AATGAGTAGAAGATAGTTGA+AGG + chr4_3:48573136-48573155 None:intergenic 30.0%
AACTATCTTCTACTCATTCA+AGG - chr4_3:48573138-48573157 Msa0644560:three_prime_UTR 30.0%
!! ATTATTTCTGCAGATAAGGT+TGG - chr4_3:48573448-48573467 Msa0644560:three_prime_UTR 30.0%
AAAATAGTTCTTACCAATGC+AGG + chr4_3:48573607-48573626 None:intergenic 30.0%
TGAGAAAATAGGATTTGAAC+TGG - chr4_3:48573685-48573704 Msa0644560:intron 30.0%
TGCATGCATGATAAAAAAAC+AGG - chr4_3:48573873-48573892 Msa0644560:intron 30.0%
TCATATGTACCAAAGAGAAT+GGG + chr4_3:48574130-48574149 None:intergenic 30.0%
TTCATATGTACCAAAGAGAA+TGG + chr4_3:48574131-48574150 None:intergenic 30.0%
! TTTTTATCCTAAGTGGAACT+TGG + chr4_3:48574817-48574836 None:intergenic 30.0%
GACAGATACATACAAATTGA+AGG - chr4_3:48574997-48575016 Msa0644560:CDS 30.0%
! CGTAATAGATATGTTTTTCC+TGG + chr4_3:48575028-48575047 None:intergenic 30.0%
! AAATTAGTATCATTGATGGC+TGG + chr4_3:48575361-48575380 None:intergenic 30.0%
!!! CTTGACAAGTTTGGTTTTTT+GGG + chr4_3:48575501-48575520 None:intergenic 30.0%
TAGTTCCAAAGAAATGTTGT+TGG + chr4_3:48575603-48575622 None:intergenic 30.0%
TTAAATCCATGAAGATGCAA+AGG + chr4_3:48575799-48575818 None:intergenic 30.0%
!! AATTTCTTTGTTGTTGGTCA+AGG - chr4_3:48575817-48575836 Msa0644560:intron 30.0%
CAACAAGATTAAACTTTGCA+GGG + chr4_3:48575870-48575889 None:intergenic 30.0%
TCAACAAGATTAAACTTTGC+AGG + chr4_3:48575871-48575890 None:intergenic 30.0%
ACTTATTTAAGCTGATCTGT+TGG + chr4_3:48576205-48576224 None:intergenic 30.0%
TATGAATGTATGGTTGAAAC+AGG - chr4_3:48576351-48576370 Msa0644560:intron 30.0%
GGTATAGTAATCAACATTTG+GGG + chr4_3:48576494-48576513 None:intergenic 30.0%
CATGGAAATGGAAAATCAAA+AGG + chr4_3:48576562-48576581 None:intergenic 30.0%
TGATACAATGAAAGAAAGAC+TGG + chr4_3:48576669-48576688 None:intergenic 30.0%
AAGTGACCAAAAAATAAAGG+TGG - chr4_3:48576712-48576731 Msa0644560:CDS 30.0%
AGTGACCAAAAAATAAAGGT+GGG - chr4_3:48576713-48576732 Msa0644560:CDS 30.0%
TATCTTCTACTCATTCAAGG+TGG - chr4_3:48573141-48573160 Msa0644560:three_prime_UTR 35.0%
TGTCACTGTTCCATTATCAA+AGG - chr4_3:48573183-48573202 Msa0644560:three_prime_UTR 35.0%
GCAAAAAGAGCCTTTGATAA+TGG + chr4_3:48573196-48573215 None:intergenic 35.0%
AAGTAGCCAAAACAAATCCA+GGG + chr4_3:48573255-48573274 None:intergenic 35.0%
CAACGACATTTGATATGCTT+GGG + chr4_3:48573713-48573732 None:intergenic 35.0%
ACAACGACATTTGATATGCT+TGG + chr4_3:48573714-48573733 None:intergenic 35.0%
TGTACATCATGGATCTAGTT+AGG - chr4_3:48573797-48573816 Msa0644560:intron 35.0%
GCATGATAAAAAAACAGGCA+TGG - chr4_3:48573878-48573897 Msa0644560:intron 35.0%
AACTCTGACCTGTTTGAATT+GGG + chr4_3:48573958-48573977 None:intergenic 35.0%
TAACTCTGACCTGTTTGAAT+TGG + chr4_3:48573959-48573978 None:intergenic 35.0%
GATAAGATTCATTGTGCCTT+GGG + chr4_3:48574081-48574100 None:intergenic 35.0%
! TCCTTTTCAAAAACCCTACA+AGG - chr4_3:48574099-48574118 Msa0644560:intron 35.0%
!! TCCTTGTAGGGTTTTTGAAA+AGG + chr4_3:48574103-48574122 None:intergenic 35.0%
CATATGTACCAAAGAGAATG+GGG + chr4_3:48574129-48574148 None:intergenic 35.0%
TGTAGGCATCAGAAACATTT+GGG + chr4_3:48574398-48574417 None:intergenic 35.0%
GAAAAAACCAAGTTCCACTT+AGG - chr4_3:48574807-48574826 Msa0644560:CDS 35.0%
AATGTGGCATTTGGGTAATT+TGG + chr4_3:48575208-48575227 None:intergenic 35.0%
TAGCTAGACCATATTTCACA+GGG - chr4_3:48575236-48575255 Msa0644560:intron 35.0%
!! TTCTAAAATTCCAGCTACTG+TGG + chr4_3:48575281-48575300 None:intergenic 35.0%
!!! GAAGCACAGGTTTTAGAATA+GGG + chr4_3:48575339-48575358 None:intergenic 35.0%
!!! TAGTTTTAGGCACATTTGCA+GGG + chr4_3:48575432-48575451 None:intergenic 35.0%
!!! ATAGTTTTAGGCACATTTGC+AGG + chr4_3:48575433-48575452 None:intergenic 35.0%
! TTTTTCTTTACCGTTGGACT+AGG - chr4_3:48575463-48575482 Msa0644560:intron 35.0%
!!! CCTTGACAAGTTTGGTTTTT+TGG + chr4_3:48575502-48575521 None:intergenic 35.0%
CCAAAAAACCAAACTTGTCA+AGG - chr4_3:48575499-48575518 Msa0644560:intron 35.0%
TATTTGGTCCTTGACAAGTT+TGG + chr4_3:48575510-48575529 None:intergenic 35.0%
CTTCTCCAACAACATTTCTT+TGG - chr4_3:48575595-48575614 Msa0644560:CDS 35.0%
!! TGGTTTTACAACGGATTTTC+CGG - chr4_3:48575627-48575646 Msa0644560:CDS 35.0%
GTATAGTTAAACGGCCTTAA+CGG + chr4_3:48575658-48575677 None:intergenic 35.0%
TTAAGGCCGTTTAACTATAC+AGG - chr4_3:48575658-48575677 Msa0644560:CDS 35.0%
GGAGTTCCTGTATAGTTAAA+CGG + chr4_3:48575667-48575686 None:intergenic 35.0%
AACTCCTCCAAACAATACTT+TGG - chr4_3:48575681-48575700 Msa0644560:intron 35.0%
!! CTAACCAAAGTATTGTTTGG+AGG + chr4_3:48575688-48575707 None:intergenic 35.0%
! TAGTAATGGAACAAAGACAG+TGG - chr4_3:48575705-48575724 Msa0644560:intron 35.0%
ACCATATAACACTAGAGTTC+AGG - chr4_3:48575732-48575751 Msa0644560:intron 35.0%
ACCTGAACTCTAGTGTTATA+TGG + chr4_3:48575736-48575755 None:intergenic 35.0%
! TAGAGTTCAGGTTATATTGC+AGG - chr4_3:48575744-48575763 Msa0644560:intron 35.0%
! ATTGCAGGATACAAGCATTT+TGG - chr4_3:48575759-48575778 Msa0644560:intron 35.0%
! TTGCAGGATACAAGCATTTT+GGG - chr4_3:48575760-48575779 Msa0644560:intron 35.0%
!!! TTTGTTGTTGGTCAAGGTTT+TGG - chr4_3:48575823-48575842 Msa0644560:intron 35.0%
! TGATTGACTATGGTTCTGTT+TGG - chr4_3:48575966-48575985 Msa0644560:CDS 35.0%
!! CTTATTTTCGTAAGTTCTCC+AGG + chr4_3:48576110-48576129 None:intergenic 35.0%
GAATCATCATATACTAGTGC+CGG + chr4_3:48576647-48576666 None:intergenic 35.0%
!!! AACCACCCACCTTTATTTTT+TGG + chr4_3:48576721-48576740 None:intergenic 35.0%
AGTAGCCAAAACAAATCCAG+GGG + chr4_3:48573254-48573273 None:intergenic 40.0%
GAAGTAGCCAAAACAAATCC+AGG + chr4_3:48573256-48573275 None:intergenic 40.0%
!!! GTTTTGGCTACTTCACAACA+TGG - chr4_3:48573262-48573281 Msa0644560:three_prime_UTR 40.0%
! AAAAGCATGGTTACCGTGAA+TGG - chr4_3:48573497-48573516 Msa0644560:three_prime_UTR 40.0%
AAAGCATGGTTACCGTGAAT+GGG - chr4_3:48573498-48573517 Msa0644560:three_prime_UTR 40.0%
CTCGAATTGTTGTACGAGAA+GGG - chr4_3:48573534-48573553 Msa0644560:CDS 40.0%
TCGAATTGTTGTACGAGAAG+GGG - chr4_3:48573535-48573554 Msa0644560:CDS 40.0%
! AGGGGACAGATTATTGGTTA+AGG - chr4_3:48573553-48573572 Msa0644560:CDS 40.0%
CAATGCAGGCTGATATTGTT+TGG + chr4_3:48573593-48573612 None:intergenic 40.0%
CAAACAATATCAGCCTGCAT+TGG - chr4_3:48573591-48573610 Msa0644560:CDS 40.0%
GTGTGTGAGAGTAAAACTCA+TGG + chr4_3:48573745-48573764 None:intergenic 40.0%
!! GGGCATTGAGTTATGTATGA+TGG + chr4_3:48573938-48573957 None:intergenic 40.0%
ACTCAATGCCCAATTCAAAC+AGG - chr4_3:48573947-48573966 Msa0644560:intron 40.0%
GTGTACAACTTCACCATTGT+TGG - chr4_3:48573980-48573999 Msa0644560:intron 40.0%
TTCACCATTGTTGGACAAAG+AGG - chr4_3:48573989-48574008 Msa0644560:intron 40.0%
AGTTCCTCTTTGTCCAACAA+TGG + chr4_3:48573996-48574015 None:intergenic 40.0%
TGGTTAAGAGCTACTGTCTA+TGG - chr4_3:48574040-48574059 Msa0644560:intron 40.0%
GGATAAGATTCATTGTGCCT+TGG + chr4_3:48574082-48574101 None:intergenic 40.0%
GACAAATATGCATAGGTGAG+TGG - chr4_3:48574319-48574338 Msa0644560:CDS 40.0%
AAATATGCATAGGTGAGTGG+TGG - chr4_3:48574322-48574341 Msa0644560:CDS 40.0%
GTGTAGGCATCAGAAACATT+TGG + chr4_3:48574399-48574418 None:intergenic 40.0%
TCTGATGCCTACACCATTAA+TGG - chr4_3:48574405-48574424 Msa0644560:CDS 40.0%
CTGATGCCTACACCATTAAT+GGG - chr4_3:48574406-48574425 Msa0644560:CDS 40.0%
AGGAAACCCATTAATGGTGT+AGG + chr4_3:48574415-48574434 None:intergenic 40.0%
!! TACACCATTAATGGGTTTCC+TGG - chr4_3:48574414-48574433 Msa0644560:CDS 40.0%
!! CCTTTGGAGCAATTGTAAAG+AGG + chr4_3:48574441-48574460 None:intergenic 40.0%
CCTCTTTACAATTGCTCCAA+AGG - chr4_3:48574438-48574457 Msa0644560:CDS 40.0%
ACGTGCAGCTTGTATATAAC+TGG - chr4_3:48574464-48574483 Msa0644560:CDS 40.0%
TACAAATTGAAGGTGAAGCC+AGG - chr4_3:48575007-48575026 Msa0644560:intron 40.0%
! ATGATGGTATTGGACTCGAA+TGG + chr4_3:48575142-48575161 None:intergenic 40.0%
GAGTCCAATACCATCATACT+TGG - chr4_3:48575145-48575164 Msa0644560:intron 40.0%
TGGTCCAAGTATGATGGTAT+TGG + chr4_3:48575152-48575171 None:intergenic 40.0%
AATACCATCATACTTGGACC+AGG - chr4_3:48575151-48575170 Msa0644560:intron 40.0%
AGAACATTTGTGGTTTGACC+TGG + chr4_3:48575172-48575191 None:intergenic 40.0%
GCATGTAGAATGTGGCATTT+GGG + chr4_3:48575216-48575235 None:intergenic 40.0%
AGCATGTAGAATGTGGCATT+TGG + chr4_3:48575217-48575236 None:intergenic 40.0%
TCTAGCTAGCATGTAGAATG+TGG + chr4_3:48575224-48575243 None:intergenic 40.0%
CTAGCTAGACCATATTTCAC+AGG - chr4_3:48575235-48575254 Msa0644560:intron 40.0%
!!! GGAAGCACAGGTTTTAGAAT+AGG + chr4_3:48575340-48575359 None:intergenic 40.0%
!!! CAAGTTTGGTTTTTTGGGCA+TGG + chr4_3:48575496-48575515 None:intergenic 40.0%
!! TGTTGGAGAAGTGCTATAGA+AGG + chr4_3:48575586-48575605 None:intergenic 40.0%
! ATTTTCCGGTTGTACCGTTA+AGG - chr4_3:48575641-48575660 Msa0644560:CDS 40.0%
AGTCATCCTTTGCATCTTCA+TGG - chr4_3:48575790-48575809 Msa0644560:intron 40.0%
ATCTTGTTGATCCTGTTGAG+AGG - chr4_3:48575881-48575900 Msa0644560:intron 40.0%
TAGTCAATCACCTGGATTGT+CGG + chr4_3:48575956-48575975 None:intergenic 40.0%
ACAATCCAGGTGATTGACTA+TGG - chr4_3:48575956-48575975 Msa0644560:CDS 40.0%
GTATGGTTGAAACAGGTGTT+TGG - chr4_3:48576358-48576377 Msa0644560:intron 40.0%
ACTTTGATGTGCACCTTAGT+TGG - chr4_3:48576394-48576413 Msa0644560:intron 40.0%
CTTTGATGTGCACCTTAGTT+GGG - chr4_3:48576395-48576414 Msa0644560:intron 40.0%
TTTGATGTGCACCTTAGTTG+GGG - chr4_3:48576396-48576415 Msa0644560:intron 40.0%
CAACATTTGGGGAGATCTTT+AGG + chr4_3:48576483-48576502 None:intergenic 40.0%
GGAAAATTGGCAGAGTCAAT+TGG + chr4_3:48576515-48576534 None:intergenic 40.0%
GGCACAGTATATGCAAAATG+TGG + chr4_3:48576608-48576627 None:intergenic 40.0%
GACCAAAAAATAAAGGTGGG+TGG - chr4_3:48576716-48576735 Msa0644560:CDS 40.0%
!! AACCTCCCCTGGATTTGTTT+TGG - chr4_3:48573246-48573265 Msa0644560:three_prime_UTR 45.0%
TCTGCAGATAAGGTTGGCAA+AGG - chr4_3:48573454-48573473 Msa0644560:three_prime_UTR 45.0%
TAAGGTTGGCAAAGGTTACG+AGG - chr4_3:48573462-48573481 Msa0644560:three_prime_UTR 45.0%
!! CGGTAACCATGCTTTTTGTG+TGG + chr4_3:48573493-48573512 None:intergenic 45.0%
CCTTCTCGTACAACAATTCG+AGG + chr4_3:48573536-48573555 None:intergenic 45.0%
CCTCGAATTGTTGTACGAGA+AGG - chr4_3:48573533-48573552 Msa0644560:CDS 45.0%
ACGAGAAGGGGACAGATTAT+TGG - chr4_3:48573547-48573566 Msa0644560:CDS 45.0%
TGAGACAACTTCGTAGTGGT+TGG - chr4_3:48573903-48573922 Msa0644560:intron 45.0%
ACAACTTCGTAGTGGTTGGT+CGG - chr4_3:48573907-48573926 Msa0644560:intron 45.0%
GACAAAGAGGAACTCTCTTC+TGG - chr4_3:48574002-48574021 Msa0644560:intron 45.0%
TCTGGCATGCTCATTTCTCA+TGG - chr4_3:48574020-48574039 Msa0644560:intron 45.0%
ATTCATTGTGCCTTGGGAGA+AGG + chr4_3:48574075-48574094 None:intergenic 45.0%
AGAATGGGGACTTCCTTGTA+GGG + chr4_3:48574115-48574134 None:intergenic 45.0%
AAGGAAGTCCCCATTCTCTT+TGG - chr4_3:48574118-48574137 Msa0644560:intron 45.0%
GCTTGTGCAATTACAGCTTC+AGG + chr4_3:48574357-48574376 None:intergenic 45.0%
AGGTCCAGGAAACCCATTAA+TGG + chr4_3:48574421-48574440 None:intergenic 45.0%
GAGCAATTGTAAAGAGGTCC+AGG + chr4_3:48574435-48574454 None:intergenic 45.0%
AAGATGCATCTGCTTCGACA+AGG + chr4_3:48575111-48575130 None:intergenic 45.0%
TTGACCTGGTCCAAGTATGA+TGG + chr4_3:48575158-48575177 None:intergenic 45.0%
TAGACCATATTTCACAGGGC+AGG - chr4_3:48575240-48575259 Msa0644560:intron 45.0%
AGACCATATTTCACAGGGCA+GGG - chr4_3:48575241-48575260 Msa0644560:intron 45.0%
TTCGACAATTCCACAGTAGC+TGG - chr4_3:48575268-48575287 Msa0644560:intron 45.0%
!! GGCACATTTGCAGGGTATTT+TGG + chr4_3:48575424-48575443 None:intergenic 45.0%
!! TGGACTAGTTCCTAGTCCAA+CGG + chr4_3:48575476-48575495 None:intergenic 45.0%
GCAACAGTATTCCTCTCAAC+AGG + chr4_3:48575895-48575914 None:intergenic 45.0%
AATACTGTTGCTGTGCCTTC+TGG - chr4_3:48575904-48575923 Msa0644560:CDS 45.0%
CAGAACCATAGTCAATCACC+TGG + chr4_3:48575964-48575983 None:intergenic 45.0%
! ATGGCTTGGATTGTTGAGGA+TGG - chr4_3:48576426-48576445 Msa0644560:intron 45.0%
! GGAGGAGGCAATTTTTGATC+TGG + chr4_3:48576459-48576478 None:intergenic 45.0%
CATTTGGGGAGATCTTTAGG+AGG + chr4_3:48576480-48576499 None:intergenic 45.0%
!! ATAAATAATTTATTATACTT+TGG - chr4_3:48574177-48574196 Msa0644560:intron 5.0%
!! TAAAATATTATTAATTAAAG+TGG + chr4_3:48574772-48574791 None:intergenic 5.0%
CAAATCCAGGGGAGGTTAAG+AGG + chr4_3:48573243-48573262 None:intergenic 50.0%
AGCCAAAACAAATCCAGGGG+AGG + chr4_3:48573251-48573270 None:intergenic 50.0%
GCTGTGCCACACAAAAAGCA+TGG - chr4_3:48573484-48573503 Msa0644560:three_prime_UTR 50.0%
TACCGTGAATGGGAAGTTCC+CGG - chr4_3:48573508-48573527 Msa0644560:exon 50.0%
GTACAACAATTCGAGGACCC+GGG + chr4_3:48573529-48573548 None:intergenic 50.0%
CGTACAACAATTCGAGGACC+CGG + chr4_3:48573530-48573549 None:intergenic 50.0%
GGTGTGAGACAACTTCGTAG+TGG - chr4_3:48573899-48573918 Msa0644560:intron 50.0%
GAGAATGGGGACTTCCTTGT+AGG + chr4_3:48574116-48574135 None:intergenic 50.0%
ATTGCACAAGCTCTGCAGAC+AGG - chr4_3:48574366-48574385 Msa0644560:CDS 50.0%
TTGCACAAGCTCTGCAGACA+GGG - chr4_3:48574367-48574386 Msa0644560:CDS 50.0%
ACAAGCTGCACGTGTACCTT+TGG + chr4_3:48574457-48574476 None:intergenic 50.0%
GTACCCTGCCCTGTGAAATA+TGG + chr4_3:48575247-48575266 None:intergenic 50.0%
! TCATTGATGGCTGGAAGCAC+AGG + chr4_3:48575352-48575371 None:intergenic 50.0%
AACGGCCTTAACGGTACAAC+CGG + chr4_3:48575649-48575668 None:intergenic 50.0%
AATCACCTGGATTGTCGGCA+AGG + chr4_3:48575951-48575970 None:intergenic 50.0%
TGCACCTTAGTTGGGGATTG+AGG - chr4_3:48576403-48576422 Msa0644560:intron 50.0%
CCATCCTCAATCCCCAACTA+AGG + chr4_3:48576410-48576429 None:intergenic 50.0%
CCTTAGTTGGGGATTGAGGA+TGG - chr4_3:48576407-48576426 Msa0644560:intron 50.0%
! GAGGATGGCTTGGATTGTTG+AGG - chr4_3:48576422-48576441 Msa0644560:intron 50.0%
! TTGGGGAGATCTTTAGGAGG+AGG + chr4_3:48576477-48576496 None:intergenic 50.0%
AGGGGAGGTTAAGAGGAAGG+TGG + chr4_3:48573236-48573255 None:intergenic 55.0%
ACCTTCCTCTTAACCTCCCC+TGG - chr4_3:48573235-48573254 Msa0644560:three_prime_UTR 55.0%
TCCAGGGGAGGTTAAGAGGA+AGG + chr4_3:48573239-48573258 None:intergenic 55.0%
ACCGTGAATGGGAAGTTCCC+GGG - chr4_3:48573509-48573528 Msa0644560:exon 55.0%
ACCCGGGAACTTCCCATTCA+CGG + chr4_3:48573513-48573532 None:intergenic 55.0%
! CTTCGTAGTGGTTGGTCGGA+TGG - chr4_3:48573911-48573930 Msa0644560:intron 55.0%
GACCTCTCATCCTTCTCCCA+AGG - chr4_3:48574062-48574081 Msa0644560:intron 55.0%
TGCCTTGGGAGAAGGATGAG+AGG + chr4_3:48574067-48574086 None:intergenic 55.0%
TGCACAAGCTCTGCAGACAG+GGG - chr4_3:48574368-48574387 Msa0644560:CDS 55.0%
ACTGTTGCTGTGCCTTCTGG+TGG - chr4_3:48575907-48575926 Msa0644560:CDS 55.0%
TTGCTGTGCCTTCTGGTGGT+TGG - chr4_3:48575911-48575930 Msa0644560:CDS 55.0%
TGCTGTGCCTTCTGGTGGTT+GGG - chr4_3:48575912-48575931 Msa0644560:CDS 55.0%
CGATTCCTTGCCGACAATCC+AGG - chr4_3:48575943-48575962 Msa0644560:CDS 55.0%
GTTGGGGATTGAGGATGGCT+TGG - chr4_3:48576412-48576431 Msa0644560:intron 55.0%
! GGGAGATCTTTAGGAGGAGG+AGG + chr4_3:48576474-48576493 None:intergenic 55.0%
GCCAGAGAGTGAAGTGTGTC+CGG - chr4_3:48576625-48576644 Msa0644560:intron 55.0%
GCACAAGCTCTGCAGACAGG+GGG - chr4_3:48574369-48574388 Msa0644560:CDS 60.0%
ATCGCGACCCAACCACCAGA+AGG + chr4_3:48575922-48575941 None:intergenic 60.0%
GCCGGACACACTTCACTCTC+TGG + chr4_3:48576629-48576648 None:intergenic 60.0%
CAAGCTCTGCAGACAGGGGG+TGG - chr4_3:48574372-48574391 Msa0644560:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 48573107 48576916 48573107 ID=Msa0644560;Name=Msa0644560
chr4_3 mRNA 48573107 48576916 48573107 ID=Msa0644560-mRNA-1;Parent=Msa0644560;Name=Msa0644560-mRNA-1;_AED=0.07;_eAED=0.10;_QI=59|0.4|0.66|1|0.6|0.66|6|413|516
chr4_3 exon 48573107 48573650 48573107 ID=Msa0644560-mRNA-1:exon:11582;Parent=Msa0644560-mRNA-1
chr4_3 exon 48574185 48575021 48574185 ID=Msa0644560-mRNA-1:exon:11581;Parent=Msa0644560-mRNA-1
chr4_3 exon 48575564 48575689 48575564 ID=Msa0644560-mRNA-1:exon:11580;Parent=Msa0644560-mRNA-1
chr4_3 exon 48575884 48576128 48575884 ID=Msa0644560-mRNA-1:exon:11579;Parent=Msa0644560-mRNA-1
chr4_3 exon 48576493 48576557 48576493 ID=Msa0644560-mRNA-1:exon:11578;Parent=Msa0644560-mRNA-1
chr4_3 exon 48576711 48576916 48576711 ID=Msa0644560-mRNA-1:exon:11577;Parent=Msa0644560-mRNA-1
chr4_3 five_prime_UTR 48576858 48576916 48576858 ID=Msa0644560-mRNA-1:five_prime_utr;Parent=Msa0644560-mRNA-1
chr4_3 CDS 48576711 48576857 48576711 ID=Msa0644560-mRNA-1:cds;Parent=Msa0644560-mRNA-1
chr4_3 CDS 48576493 48576557 48576493 ID=Msa0644560-mRNA-1:cds;Parent=Msa0644560-mRNA-1
chr4_3 CDS 48575884 48576128 48575884 ID=Msa0644560-mRNA-1:cds;Parent=Msa0644560-mRNA-1
chr4_3 CDS 48575564 48575689 48575564 ID=Msa0644560-mRNA-1:cds;Parent=Msa0644560-mRNA-1
chr4_3 CDS 48574185 48575021 48574185 ID=Msa0644560-mRNA-1:cds;Parent=Msa0644560-mRNA-1
chr4_3 CDS 48573520 48573650 48573520 ID=Msa0644560-mRNA-1:cds;Parent=Msa0644560-mRNA-1
chr4_3 three_prime_UTR 48573107 48573519 48573107 ID=Msa0644560-mRNA-1:three_prime_utr;Parent=Msa0644560-mRNA-1
Gene Sequence

>Msa0644560

ATGCATATCAAAATGATTGTCACTGTTCCATTATCAAAGGCTCTTTTTGCAGCTTTTCTCTTTGTCACCACCTTCCTCTTAACCTCCCCTGGATTTGTTTTGGCTACTTCACAACATGGAAGTGTTACAAGACACTACAAATTTGATGTTGGCAAAGGTTACGAGGCTGTGCCACACAAAAAGCATGGTTACCGTGAATGGGAAGTTCCCGGGCATGGTGTGAGACAACTTCGTAGTGGTTGGTCGGATGGTCCATCATACATAACTCAATGCCCAATTCAAACAGGTCAGAGTTATGTGTACAACTTCACCATTGTTGGACAAAGAGGAACTCTCTTCTGGCATGCTCATTTCTCATGGTTAAGAGCTACTGTCTATGGACCTCTCATCCTTCTCCCAAGGCACAATGAATCTTATCCTTTTCAAAAACCCTACAAGGAAGTCCCCATTCTCTTTGGTGAGTGGTGGAATGCAGATCCTGAAGCTGTAATTGCACAAGCTCTGCAGACAGGGGGTGGCCCAAATGTTTCTGATGCCTACACCATTAATGGGTTTCCTGGACCTCTTTACAATTGCTCCAAAGATACATACAAATTGAAGGTGAAGCCAGGAAAAACATATCTATTACGTTTGATCAACGCTGCACTCAACGACGAACTCTTTTTCAGCATTGCTAATCACACATTAATCCTTGTCGAAGCAGATGCATCTTACATTAAACCATTCGAGTCCAATACCATCATACTTGGACCAGGTCAAACCACAAATGTTCTATTAAAAACTAAACCAAATTACCCAAATGCCACATTCTACATGCTAGCTAGACCATATTTCACAGGGCAGGGTACTTTCGACAATTCCACAGTAGCTGGAATTTTAGAATACACTAAACCAAATGATCAAACAAATAAAAATCTCCCTATTCTAAAACCTGTGCTTCCAGCCATCAATGATACTAATTTTGTTGCTAATTTTAGTAACAAATTTCTTAGCTTAAATAGTCCAAAATACCCTGCAAATGTGCCTAAAACTATTGACAAAAACTTTTTCTTTACCGTTGGACTAGGAACTAGTCCATGCCCAAAAAACCAAACTTGTCAAGGACCAAATAATAGTTCAAATTCAAAATTTGCAGCTTCAATGAACAATGTATCATTTGCTTTACCTTCTATAGCACTTCTCCAACAACATTTCTTTGGAACTAATAATGGTTTTACAACGGATTTTCCGGTTGTACCGTTAAGGCCGTTTAACTATACAGGAACTCCTCCAAACAATACTTTGGTTAGTAATGGAACAAAGACAGTGGTGATACCATATAACACTAGAGTTCAGGTTATATTGCAGGATACAAGCATTTTGGGAGCTGAGAGTCATCCTTTGCATCTTCATGGATTTAATTTCTTTGTTGTTGGTCAAGGTGTTTGGCTGATGCATTGTCACTTTGATGTGCACCTTAGTTGGGGATTGAGGATGGCTTGGATTGTTGAGGATGGAAAGTTACCAGATCAAAAATTGCCTCCTCCTCCTAAAGATCTCCCCAAATGTTGA
Protein sequence

>Msa0644560

MHIKMIVTVPLSKALFAAFLFVTTFLLTSPGFVLATSQHGSVTRHYKFDVGKGYEAVPHKKHGYREWEVPGHGVRQLRSGWSDGPSYITQCPIQTGQSYVYNFTIVGQRGTLFWHAHFSWLRATVYGPLILLPRHNESYPFQKPYKEVPILFGEWWNADPEAVIAQALQTGGGPNVSDAYTINGFPGPLYNCSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLILVEADASYIKPFESNTIILGPGQTTNVLLKTKPNYPNATFYMLARPYFTGQGTFDNSTVAGILEYTKPNDQTNKNLPILKPVLPAINDTNFVANFSNKFLSLNSPKYPANVPKTIDKNFFFTVGLGTSPCPKNQTCQGPNNSSNSKFAASMNNVSFALPSIALLQQHFFGTNNGFTTDFPVVPLRPFNYTGTPPNNTLVSNGTKTVVIPYNTRVQVILQDTSILGAESHPLHLHGFNFFVVGQGVWLMHCHFDVHLSWGLRMAWIVEDGKLPDQKLPPPPKDLPKC*