AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0036860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0036860 MtrunA17_Chr1g0193421 97.248 218 6 0 1 218 2 219 2.02e-153 424
Msa0036860 MtrunA17_Chr7g0271211 79.592 196 40 0 22 217 19 214 5.72e-114 324
Msa0036860 MtrunA17_Chr1g0193671 67.299 211 69 0 8 218 8 218 2.44e-100 290
Msa0036860 MtrunA17_Chr5g0414971 46.667 195 103 1 22 215 26 220 5.03e-57 180
Msa0036860 MtrunA17_Chr4g0007041 44.954 218 112 4 1 213 1 215 9.15e-57 179
Msa0036860 MtrunA17_Chr4g0007051 44.954 218 112 4 1 213 1 215 2.60e-56 178
Msa0036860 MtrunA17_Chr4g0007031 44.954 218 112 4 1 213 1 215 3.13e-56 178
Msa0036860 MtrunA17_Chr5g0419971 44.954 218 112 4 1 213 1 215 3.13e-56 178
Msa0036860 MtrunA17_Chr5g0419981 44.954 218 112 4 1 213 1 215 3.13e-56 178
Msa0036860 MtrunA17_Chr2g0285871 44.954 218 112 4 1 213 1 215 5.38e-56 177
Msa0036860 MtrunA17_Chr1g0189841 46.154 208 106 3 12 214 11 217 5.92e-56 177
Msa0036860 MtrunA17_Chr6g0449731 45.755 212 109 3 7 214 6 215 8.70e-56 177
Msa0036860 MtrunA17_Chr6g0449761 45.755 212 109 3 7 214 6 215 8.78e-56 177
Msa0036860 MtrunA17_Chr6g0449751 45.755 212 109 3 7 214 6 215 1.92e-55 176
Msa0036860 MtrunA17_Chr6g0449771 45.283 212 110 3 7 214 6 215 6.35e-55 174
Msa0036860 MtrunA17_Chr1g0156131 43.415 205 108 2 12 214 11 209 1.17e-53 171
Msa0036860 MtrunA17_Chr1g0210761 41.827 208 114 3 9 216 9 209 1.16e-52 168
Msa0036860 MtrunA17_Chr6g0449791 44.776 201 104 3 7 202 6 204 2.58e-50 162
Msa0036860 MtrunA17_Chr2g0292831 42.424 198 107 3 20 214 19 212 4.29e-49 159
Msa0036860 MtrunA17_Chr2g0292901 42.408 191 103 3 27 214 27 213 1.88e-47 155
Msa0036860 MtrunA17_Chr6g0449781 41.038 212 118 4 7 214 6 214 8.56e-47 154
Msa0036860 MtrunA17_Chr1g0178711 37.273 220 127 5 7 218 9 225 1.31e-44 148
Msa0036860 MtrunA17_Chr8g0343911 39.409 203 117 2 12 214 8 204 3.42e-41 139
Msa0036860 MtrunA17_Chr2g0292861 41.860 172 97 2 46 214 7 178 5.13e-41 137
Msa0036860 MtrunA17_Chr2g0292841 41.279 172 98 2 46 214 7 178 1.04e-39 134
Msa0036860 MtrunA17_Chr2g0300561 39.785 186 110 1 29 214 23 206 9.76e-39 133
Msa0036860 MtrunA17_Chr8g0343934 35.023 217 132 4 1 217 1 208 2.00e-38 132
Msa0036860 MtrunA17_Chr2g0313961 36.449 214 127 4 1 214 1 205 4.53e-38 131
Msa0036860 MtrunA17_Chr2g0300581 38.503 187 113 1 29 215 23 207 1.02e-37 130
Msa0036860 MtrunA17_Chr2g0301611 36.279 215 128 4 1 215 1 206 1.55e-37 130
Msa0036860 MtrunA17_Chr2g0300591 37.566 189 116 1 29 217 23 209 3.41e-37 129
Msa0036860 MtrunA17_Chr2g0297231 35.814 215 129 4 1 215 1 206 1.15e-36 127
Msa0036860 MtrunA17_Chr3g0130241 38.182 220 113 6 1 214 63 265 1.27e-36 129
Msa0036860 MtrunA17_Chr8g0343961 35.484 217 131 5 1 217 1 208 1.92e-36 127
Msa0036860 MtrunA17_Chr8g0343954 35.602 191 119 3 27 217 22 208 2.98e-36 126
Msa0036860 MtrunA17_Chr2g0302171 36.744 215 127 4 1 215 1 206 3.08e-36 126
Msa0036860 MtrunA17_Chr3g0084531 35.349 215 130 4 1 215 1 206 2.04e-35 124
Msa0036860 MtrunA17_Chr3g0084511 34.419 215 131 4 1 215 1 205 2.54e-35 124
Msa0036860 MtrunA17_Chr2g0292911 51.304 115 54 1 46 158 7 121 5.95e-35 121
Msa0036860 MtrunA17_Chr4g0003361 40.722 194 110 4 21 214 13 201 7.49e-35 122
Msa0036860 MtrunA17_Chr2g0297241 35.349 215 130 4 1 215 1 206 7.98e-35 122
Msa0036860 MtrunA17_Chr3g0084521 35.814 215 128 5 1 215 1 205 1.67e-34 122
Msa0036860 MtrunA17_Chr8g0335851 42.012 169 95 2 22 188 25 192 3.85e-34 121
Msa0036860 MtrunA17_Chr2g0321601 37.624 202 102 6 15 211 18 200 2.18e-33 119
Msa0036860 MtrunA17_Chr5g0411961 31.163 215 139 4 1 215 1 206 8.21e-33 117
Msa0036860 MtrunA17_Chr2g0321581 36.000 200 108 5 15 211 19 201 1.89e-32 116
Msa0036860 MtrunA17_Chr2g0302541 35.979 189 117 3 27 215 22 206 2.22e-32 116
Msa0036860 MtrunA17_Chr2g0321591 36.000 200 108 5 15 211 19 201 2.32e-32 116
Msa0036860 MtrunA17_Chr8g0343921 34.171 199 127 2 14 212 7 201 1.55e-31 114
Msa0036860 MtrunA17_Chr4g0026191 35.849 212 120 7 1 211 6 202 1.63e-31 114
Msa0036860 MtrunA17_Chr4g0012651 35.263 190 119 3 26 215 21 206 2.72e-31 114
Msa0036860 MtrunA17_Chr7g0217811 34.737 190 120 3 26 215 21 206 2.96e-31 113
Msa0036860 MtrunA17_Chr8g0344021 36.082 194 120 3 19 211 15 205 2.95e-30 111
Msa0036860 MtrunA17_Chr4g0026201 41.791 134 75 2 79 211 71 202 3.95e-30 110
Msa0036860 MtrunA17_Chr8g0344051 36.667 210 124 5 3 211 4 205 4.07e-29 108
Msa0036860 MtrunA17_Chr8g0344041 34.653 202 127 4 14 214 12 209 3.18e-28 105
Msa0036860 MtrunA17_Chr2g0286171 31.019 216 139 7 1 214 1 208 2.78e-27 103
Msa0036860 MtrunA17_Chr3g0115141 31.163 215 138 6 1 214 1 206 4.49e-25 97.8
Msa0036860 MtrunA17_Chr8g0344031 37.791 172 103 4 16 186 13 181 6.95e-24 94.7
Msa0036860 MtrunA17_Chr3g0084551 31.019 216 132 6 1 215 1 200 4.77e-21 87.4
Msa0036860 MtrunA17_Chr3g0084501 41.441 111 59 2 1 111 1 105 1.32e-17 75.5
Msa0036860 MtrunA17_Chr2g0292881 54.386 57 24 1 94 148 1 57 7.14e-15 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0036860 AT3G62020.1 70.283 212 62 1 8 218 8 219 4.59e-107 307
Msa0036860 AT1G09560.1 71.000 200 58 0 19 218 20 219 9.18e-105 301
Msa0036860 AT1G02335.1 64.679 218 77 0 1 218 2 219 9.39e-102 294
Msa0036860 AT3G62020.2 73.077 182 48 1 38 218 9 190 9.90e-97 280
Msa0036860 AT5G26700.1 62.371 194 70 1 25 218 23 213 1.23e-88 260
Msa0036860 AT3G05930.1 56.459 209 90 1 11 218 11 219 1.73e-83 247
Msa0036860 AT1G18980.1 49.519 208 103 1 8 215 14 219 1.28e-65 202
Msa0036860 AT1G18970.1 49.519 208 103 1 8 215 14 219 6.87e-65 200
Msa0036860 AT3G05950.1 50.000 210 99 3 12 215 13 222 9.58e-61 190
Msa0036860 AT4G14630.1 49.065 214 100 3 6 214 13 222 3.91e-60 188
Msa0036860 AT5G39110.1 44.545 220 116 3 1 214 1 220 2.86e-59 186
Msa0036860 AT5G39150.1 44.749 219 116 2 1 214 1 219 3.30e-59 186
Msa0036860 AT5G39180.1 44.292 219 117 2 1 214 1 219 1.69e-58 184
Msa0036860 AT5G39120.1 44.292 219 117 2 1 214 1 219 1.80e-58 184
Msa0036860 AT5G39160.1 42.727 220 121 3 1 215 1 220 2.72e-58 183
Msa0036860 AT5G39130.1 42.727 220 121 3 1 215 1 220 3.64e-58 183
Msa0036860 AT5G39190.1 42.727 220 121 3 1 215 1 220 4.89e-58 183
Msa0036860 AT3G04200.1 47.393 211 105 3 12 216 14 224 1.88e-56 179
Msa0036860 AT5G39160.3 41.176 221 119 4 1 215 1 216 7.40e-55 174
Msa0036860 AT5G38910.1 45.714 210 110 2 9 214 10 219 2.73e-53 171
Msa0036860 AT5G38940.1 46.193 197 102 2 22 214 25 221 1.27e-52 169
Msa0036860 AT5G38930.1 46.000 200 104 2 19 214 22 221 2.05e-52 169
Msa0036860 AT5G38940.2 46.193 197 102 2 22 214 49 245 2.23e-52 169
Msa0036860 AT5G38960.1 44.878 205 108 3 16 215 19 223 4.87e-52 167
Msa0036860 AT3G04170.1 41.964 224 120 5 1 217 1 221 9.04e-50 162
Msa0036860 AT5G39190.2 38.462 221 107 4 1 215 1 198 2.30e-48 157
Msa0036860 AT3G04180.1 41.117 197 112 2 20 212 23 219 3.99e-48 157
Msa0036860 AT5G39160.2 38.462 221 107 4 1 215 1 198 4.56e-48 157
Msa0036860 AT3G04150.1 39.806 206 118 3 12 211 13 218 1.22e-47 156
Msa0036860 AT3G04190.1 41.117 197 112 2 20 212 23 219 2.38e-47 155
Msa0036860 AT3G04150.2 37.443 219 118 3 12 211 13 231 1.14e-46 154
Msa0036860 AT1G10460.1 38.889 198 116 3 22 214 18 215 1.69e-42 143
Msa0036860 AT3G10080.1 37.745 204 117 5 19 216 22 221 5.11e-42 142
Msa0036860 AT3G10080.2 37.745 204 117 5 19 216 93 292 1.82e-41 142
Msa0036860 AT5G20630.1 38.140 215 126 3 1 215 1 208 1.36e-40 138
Msa0036860 AT1G74820.1 38.298 188 114 1 27 214 40 225 2.04e-40 138
Msa0036860 AT1G72610.1 39.683 189 112 1 27 215 19 205 4.46e-40 136
Msa0036860 AT5G61750.1 41.212 165 95 1 19 181 15 179 6.85e-36 126
Msa0036860 AT5G38910.2 37.500 208 93 2 9 214 10 182 1.84e-34 121

Find 86 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCAACATTCCTTGTTTCT+TGG 0.234930 1_1:+65698308 Msa0036860:CDS
AGTAAATAAGTTGATAAATA+TGG 0.244348 1_1:-65698200 None:intergenic
GTACATTGGCATTGTTCTTT+TGG 0.249139 1_1:-65699573 None:intergenic
TGGAAGTGAACTAAGGCTTT+TGG 0.286891 1_1:-65699553 None:intergenic
AATGTGTTGTTGGTGCTTCC+TGG 0.292080 1_1:-65699301 None:intergenic
CAAGGAATGTTGAAGCTTCA+TGG 0.299280 1_1:-65698300 None:intergenic
TGAGGTGGGTTGAGGCCACC+TGG 0.332492 1_1:-65699409 None:intergenic
TTCCTTGTTTCTTGGGACTT+TGG 0.347949 1_1:+65698316 Msa0036860:CDS
TTCAACATTCCTTGTTTCTT+GGG 0.352017 1_1:+65698309 Msa0036860:CDS
GTTGTTGGTGCTTCCTGGTT+TGG 0.357417 1_1:-65699296 None:intergenic
AATGTTGAAGCTTCATGGTT+TGG 0.373409 1_1:-65698295 None:intergenic
ATGTTGAAGCTTCATGGTTT+GGG 0.386713 1_1:-65698294 None:intergenic
GCATTCAACAGCCAACTTCC+TGG 0.396208 1_1:+65699613 Msa0036860:CDS
CTCTTCCATACCATTTCTGT+TGG 0.408455 1_1:+65698223 Msa0036860:five_prime_UTR
GTCTTGGTCAACACATTGTC+TGG 0.423933 1_1:-65699682 None:intergenic
TCCTGGTTTGGCTAGTATGT+TGG 0.425869 1_1:-65699284 None:intergenic
TGGTTTGGCTAGTATGTTGG+AGG 0.436671 1_1:-65699281 None:intergenic
AAGAAACAAATGAGTTGGTT+GGG 0.437841 1_1:-65698162 None:intergenic
CAGAGGTCTTGAAGATAGTC+AGG 0.446367 1_1:-65698371 None:intergenic
GGAAGCACCAACAACACATT+TGG 0.455191 1_1:+65699304 Msa0036860:CDS
GAGGTGGGTTGAGGCCACCT+GGG 0.458114 1_1:-65699408 None:intergenic
AAACTGAAAATAAGTAAGCT+AGG 0.468890 1_1:-65698252 None:intergenic
GCGCGTGGGTGAGTGTGAGG+TGG 0.468916 1_1:-65699424 None:intergenic
GTAGCAATGGACTGTGTACC+AGG 0.469832 1_1:-65699631 None:intergenic
CACTGAGCCAAATGTGTTGT+TGG 0.470338 1_1:-65699311 None:intergenic
AAAGAAACAAATGAGTTGGT+TGG 0.471193 1_1:-65698163 None:intergenic
TGTGTTGCTGACCTTGCCTC+AGG 0.480555 1_1:+65698392 Msa0036860:CDS
TTGAAGGGCAACTAGATGTT+GGG 0.481045 1_1:+65699467 Msa0036860:CDS
GGTACCCACCTGGAATGTCT+TGG 0.486086 1_1:-65699698 None:intergenic
ACATTTGGCTCAGTGGTGAC+TGG 0.488632 1_1:+65699319 Msa0036860:CDS
TGTGTTGACCAAGACATTCC+AGG 0.491853 1_1:+65699690 Msa0036860:CDS
GAGGTCGTGTTTGTGCTTGA+AGG 0.496245 1_1:+65699451 Msa0036860:CDS
GCCAACGTTCAGAAAGTTCC+AGG 0.497137 1_1:+65699343 Msa0036860:CDS
GTCAGGATCTGATGAGAAAG+AGG 0.500868 1_1:-65698354 None:intergenic
GGTGAGTGTGAGGTGGGTTG+AGG 0.500963 1_1:-65699417 None:intergenic
TAGGGTTGGACCAACAGAAA+TGG 0.502399 1_1:-65698233 None:intergenic
AACACGACCTCGGTGGCGCG+TGG 0.502632 1_1:-65699439 None:intergenic
CGATATGAGCACATTGGCTG+TGG 0.503399 1_1:-65699497 None:intergenic
CAACCTCTTTGGTACCCACC+TGG 0.508354 1_1:-65699708 None:intergenic
CGCGTGGGTGAGTGTGAGGT+GGG 0.508401 1_1:-65699423 None:intergenic
GAAAATAAGTAAGCTAGGGT+TGG 0.509742 1_1:-65698247 None:intergenic
TCAAGGATTGACTATGCCCC+AGG 0.510714 1_1:+65699391 Msa0036860:CDS
GAAATCAGAGGCATTTACCT+TGG 0.510737 1_1:-65699257 None:intergenic
GAAGAAAGAAACAAATGAGT+TGG 0.528794 1_1:-65698167 None:intergenic
AGGTCGTGTTTGTGCTTGAA+GGG 0.529030 1_1:+65699452 Msa0036860:CDS
TTGGACCAACAGAAATGGTA+TGG 0.534444 1_1:-65698228 None:intergenic
TCCTGGAACTTTCTGAACGT+TGG 0.535174 1_1:-65699344 None:intergenic
AGGTGGGTTGAGGCCACCTG+GGG 0.540934 1_1:-65699407 None:intergenic
ACACCAAGAGTGTTGAGTCC+TGG 0.541220 1_1:-65699361 None:intergenic
GTTCCAGGACTCAACACTCT+TGG 0.543606 1_1:+65699358 Msa0036860:CDS
CACTTGCAAAGAGGCATCCA+AGG 0.544665 1_1:+65699240 Msa0036860:CDS
AGAAGGTGTGGCTGCAAACA+AGG 0.550133 1_1:-65699656 None:intergenic
CTTGAAGGGCAACTAGATGT+TGG 0.567104 1_1:+65699466 Msa0036860:CDS
CTCTTGGTGTGTCTCTGTCA+AGG 0.569695 1_1:+65699374 Msa0036860:CDS
AAGAACAGCAGCAGGTACAT+TGG 0.570295 1_1:-65699587 None:intergenic
AACTGAAAATAAGTAAGCTA+GGG 0.576272 1_1:-65698251 None:intergenic
AATGCAGAAAGAACAGCAGC+AGG 0.579009 1_1:-65699595 None:intergenic
TCCAACATACTAGCCAAACC+AGG 0.587723 1_1:+65699283 Msa0036860:CDS
AGGTTGAGAAAATCAAGTCT+AGG 0.589416 1_1:+65699725 Msa0036860:CDS
ACACGACCTCGGTGGCGCGT+GGG 0.591683 1_1:-65699438 None:intergenic
TGCAAACAAGGTAGTAGCAA+TGG 0.593622 1_1:-65699644 None:intergenic
CAACAACACATTTGGCTCAG+TGG 0.597237 1_1:+65699312 Msa0036860:CDS
AAAACAGGTGTAAAAGTGAA+CGG 0.600498 1_1:+65699214 Msa0036860:intron
GTGGCGCGTGGGTGAGTGTG+AGG 0.601342 1_1:-65699427 None:intergenic
AGGCAAGAGAATTGTCATGA+TGG 0.601614 1_1:-65699927 None:intergenic
CATATCGAAGACAATTAGCA+AGG 0.601659 1_1:+65699513 Msa0036860:CDS
AGCCAAAGTCCCAAGAAACA+AGG 0.604324 1_1:-65698318 None:intergenic
AACACATTGTCTGGAACAGA+AGG 0.604334 1_1:-65699673 None:intergenic
TGGACTGTGTACCAGGAAGT+TGG 0.611304 1_1:-65699624 None:intergenic
TGTCTTCGATATGAGCACAT+TGG 0.624219 1_1:-65699503 None:intergenic
ATTCCAGGTGGGTACCAAAG+AGG 0.627495 1_1:+65699705 Msa0036860:CDS
TTCAAGCACAAACACGACCT+CGG 0.628811 1_1:-65699449 None:intergenic
ATAAGTTGATAAATATGGAG+AGG 0.633439 1_1:-65698195 None:intergenic
AAGGGTAGGTACCTGAGGCA+AGG 0.640278 1_1:-65698403 None:intergenic
CACTCACCCACGCGCCACCG+AGG 0.654415 1_1:+65699432 Msa0036860:CDS
TATGTTGGAGGAGAAATCAG+AGG 0.658115 1_1:-65699269 None:intergenic
GAACGGATTCACTTGCAAAG+AGG 0.660744 1_1:+65699231 Msa0036860:CDS
ATATCGAAGACAATTAGCAA+GGG 0.660966 1_1:+65699514 Msa0036860:CDS
GTAAAATTATCATGGTGGTG+TGG 0.668940 1_1:+65699762 Msa0036860:exon
AGGATCTGATGAGAAAGAGG+TGG 0.687344 1_1:-65698351 None:intergenic
AGGATTGACTATGCCCCAGG+TGG 0.697092 1_1:+65699394 Msa0036860:CDS
AAGCACAAACACGACCTCGG+TGG 0.701480 1_1:-65699446 None:intergenic
ATTGTCTGGAACAGAAGGTG+TGG 0.719167 1_1:-65699668 None:intergenic
TTGACCAAGACATTCCAGGT+GGG 0.732755 1_1:+65699694 Msa0036860:CDS
GTTGACCAAGACATTCCAGG+TGG 0.742504 1_1:+65699693 Msa0036860:CDS
AGGCAAGGTCAGCAACACAG+AGG 0.751663 1_1:-65698388 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAAATTTAAAAAACAG+GGG - chr1_1:65698563-65698582 None:intergenic 10.0%
!! CAAAAAAAAAATTAAAGAAA+AGG - chr1_1:65698615-65698634 None:intergenic 10.0%
!! ATATAAAATTTAAAAAACAG+GGG - chr1_1:65698563-65698582 None:intergenic 10.0%
!! CAAAAAAAAAATTAAAGAAA+AGG - chr1_1:65698615-65698634 None:intergenic 10.0%
!!! AGTAAATAAGTTGATAAATA+TGG - chr1_1:65698203-65698222 None:intergenic 15.0%
!! TATAAAATTTAAAAAACAGG+GGG - chr1_1:65698562-65698581 None:intergenic 15.0%
!!! AGTAAATAAGTTGATAAATA+TGG - chr1_1:65698203-65698222 None:intergenic 15.0%
!! TATAAAATTTAAAAAACAGG+GGG - chr1_1:65698562-65698581 None:intergenic 15.0%
!! ATAGTTATAGTCTATATGAA+TGG - chr1_1:65698451-65698470 None:intergenic 20.0%
!! TTCATATAGACTATAACTAT+AGG + chr1_1:65698451-65698470 Msa0036860:intron 20.0%
!!! CCATGATAATTTTACTTTTT+GGG - chr1_1:65699757-65699776 None:intergenic 20.0%
!!! ACCATGATAATTTTACTTTT+TGG - chr1_1:65699758-65699777 None:intergenic 20.0%
!! AAAAAGTAAAATTATCATGG+TGG + chr1_1:65699757-65699776 Msa0036860:exon 20.0%
!!! AATCATTTTATCATGTGTTT+CGG - chr1_1:65700056-65700075 None:intergenic 20.0%
!! ATAGTTATAGTCTATATGAA+TGG - chr1_1:65698451-65698470 None:intergenic 20.0%
!! TTCATATAGACTATAACTAT+AGG + chr1_1:65698451-65698470 Msa0036860:intron 20.0%
!!! CCATGATAATTTTACTTTTT+GGG - chr1_1:65699757-65699776 None:intergenic 20.0%
!!! ACCATGATAATTTTACTTTT+TGG - chr1_1:65699758-65699777 None:intergenic 20.0%
!! AAAAAGTAAAATTATCATGG+TGG + chr1_1:65699757-65699776 Msa0036860:exon 20.0%
!!! AATCATTTTATCATGTGTTT+CGG - chr1_1:65700056-65700075 None:intergenic 20.0%
!!! ATAAGTTGATAAATATGGAG+AGG - chr1_1:65698198-65698217 None:intergenic 25.0%
! AACTGAAAATAAGTAAGCTA+GGG - chr1_1:65698254-65698273 None:intergenic 25.0%
! AAACTGAAAATAAGTAAGCT+AGG - chr1_1:65698255-65698274 None:intergenic 25.0%
! ATAACTATAGGTGTAACTAT+AGG + chr1_1:65698463-65698482 Msa0036860:intron 25.0%
! GAGGTTAAGAAAACTAATAA+AGG - chr1_1:65698645-65698664 None:intergenic 25.0%
! AAAGCAAAATTAAAGCAGTT+TGG - chr1_1:65698675-65698694 None:intergenic 25.0%
! CTTAATCATGTTATGTTAGT+GGG - chr1_1:65698742-65698761 None:intergenic 25.0%
! ACTTAATCATGTTATGTTAG+TGG - chr1_1:65698743-65698762 None:intergenic 25.0%
! TCTTACTTACATTAGAGATT+TGG + chr1_1:65698816-65698835 Msa0036860:intron 25.0%
! AATCCTCATCAAGAATTTAA+TGG + chr1_1:65699028-65699047 Msa0036860:intron 25.0%
! TCTGAAAGATGATTAATTCT+TGG + chr1_1:65699176-65699195 Msa0036860:intron 25.0%
! AAAGATGATTAATTCTTGGA+GGG + chr1_1:65699180-65699199 Msa0036860:intron 25.0%
! CCCAAAAAGTAAAATTATCA+TGG + chr1_1:65699754-65699773 Msa0036860:exon 25.0%
! AAAAAATGGAACACTCATAA+AGG + chr1_1:65699828-65699847 Msa0036860:three_prime_UTR 25.0%
!!! AAAAGTAGCATTTTTCTAGT+TGG - chr1_1:65700006-65700025 None:intergenic 25.0%
!! ATATCGTGATTATAGTTTTC+AGG - chr1_1:65700029-65700048 None:intergenic 25.0%
!! ATCATTTTATCATGTGTTTC+GGG - chr1_1:65700055-65700074 None:intergenic 25.0%
!!! ATAAGTTGATAAATATGGAG+AGG - chr1_1:65698198-65698217 None:intergenic 25.0%
! AACTGAAAATAAGTAAGCTA+GGG - chr1_1:65698254-65698273 None:intergenic 25.0%
! AAACTGAAAATAAGTAAGCT+AGG - chr1_1:65698255-65698274 None:intergenic 25.0%
! ATAACTATAGGTGTAACTAT+AGG + chr1_1:65698463-65698482 Msa0036860:intron 25.0%
! GAGGTTAAGAAAACTAATAA+AGG - chr1_1:65698645-65698664 None:intergenic 25.0%
! AAAGCAAAATTAAAGCAGTT+TGG - chr1_1:65698675-65698694 None:intergenic 25.0%
! CTTAATCATGTTATGTTAGT+GGG - chr1_1:65698742-65698761 None:intergenic 25.0%
! ACTTAATCATGTTATGTTAG+TGG - chr1_1:65698743-65698762 None:intergenic 25.0%
! TCTTACTTACATTAGAGATT+TGG + chr1_1:65698816-65698835 Msa0036860:intron 25.0%
! AATCCTCATCAAGAATTTAA+TGG + chr1_1:65699028-65699047 Msa0036860:intron 25.0%
! TCTGAAAGATGATTAATTCT+TGG + chr1_1:65699176-65699195 Msa0036860:intron 25.0%
! AAAGATGATTAATTCTTGGA+GGG + chr1_1:65699180-65699199 Msa0036860:intron 25.0%
! CCCAAAAAGTAAAATTATCA+TGG + chr1_1:65699754-65699773 Msa0036860:exon 25.0%
! AAAAAATGGAACACTCATAA+AGG + chr1_1:65699828-65699847 Msa0036860:three_prime_UTR 25.0%
!!! AAAAGTAGCATTTTTCTAGT+TGG - chr1_1:65700006-65700025 None:intergenic 25.0%
!! ATATCGTGATTATAGTTTTC+AGG - chr1_1:65700029-65700048 None:intergenic 25.0%
!! ATCATTTTATCATGTGTTTC+GGG - chr1_1:65700055-65700074 None:intergenic 25.0%
!! AAGAAACAAATGAGTTGGTT+GGG - chr1_1:65698165-65698184 None:intergenic 30.0%
!! AAAGAAACAAATGAGTTGGT+TGG - chr1_1:65698166-65698185 None:intergenic 30.0%
GAAGAAAGAAACAAATGAGT+TGG - chr1_1:65698170-65698189 None:intergenic 30.0%
! TTCAACATTCCTTGTTTCTT+GGG + chr1_1:65698309-65698328 Msa0036860:CDS 30.0%
GAGAGTAGAGTGATATAAAA+GGG - chr1_1:65698424-65698443 None:intergenic 30.0%
AGAGAGTAGAGTGATATAAA+AGG - chr1_1:65698425-65698444 None:intergenic 30.0%
AAAATTTAAAAAACAGGGGG+CGG - chr1_1:65698559-65698578 None:intergenic 30.0%
CAAAATTAAAGCAGTTTGGT+AGG - chr1_1:65698671-65698690 None:intergenic 30.0%
! GATTTGGATTTTCAGCAATT+TGG + chr1_1:65698832-65698851 Msa0036860:intron 30.0%
!! GTTAGTTATCCGATTTTGAT+TGG - chr1_1:65698896-65698915 None:intergenic 30.0%
!!! TGTCCAATTTTGATTAGACT+TGG + chr1_1:65698962-65698981 Msa0036860:intron 30.0%
AGACCATTAAATTCTTGATG+AGG - chr1_1:65699034-65699053 None:intergenic 30.0%
GAAAGATGATTAATTCTTGG+AGG + chr1_1:65699179-65699198 Msa0036860:intron 30.0%
AAAACAGGTGTAAAAGTGAA+CGG + chr1_1:65699214-65699233 Msa0036860:intron 30.0%
ATATCGAAGACAATTAGCAA+GGG + chr1_1:65699514-65699533 Msa0036860:CDS 30.0%
ATCTGTCTCTTTGCAAAAAA+TGG + chr1_1:65699814-65699833 Msa0036860:three_prime_UTR 30.0%
!!! CTTATATTTTTTGACTGCGA+CGG + chr1_1:65699948-65699967 Msa0036860:three_prime_UTR 30.0%
!! AAGAAACAAATGAGTTGGTT+GGG - chr1_1:65698165-65698184 None:intergenic 30.0%
!! AAAGAAACAAATGAGTTGGT+TGG - chr1_1:65698166-65698185 None:intergenic 30.0%
GAAGAAAGAAACAAATGAGT+TGG - chr1_1:65698170-65698189 None:intergenic 30.0%
! TTCAACATTCCTTGTTTCTT+GGG + chr1_1:65698309-65698328 Msa0036860:CDS 30.0%
GAGAGTAGAGTGATATAAAA+GGG - chr1_1:65698424-65698443 None:intergenic 30.0%
AGAGAGTAGAGTGATATAAA+AGG - chr1_1:65698425-65698444 None:intergenic 30.0%
AAAATTTAAAAAACAGGGGG+CGG - chr1_1:65698559-65698578 None:intergenic 30.0%
CAAAATTAAAGCAGTTTGGT+AGG - chr1_1:65698671-65698690 None:intergenic 30.0%
! GATTTGGATTTTCAGCAATT+TGG + chr1_1:65698832-65698851 Msa0036860:intron 30.0%
!! GTTAGTTATCCGATTTTGAT+TGG - chr1_1:65698896-65698915 None:intergenic 30.0%
!!! TGTCCAATTTTGATTAGACT+TGG + chr1_1:65698962-65698981 Msa0036860:intron 30.0%
AGACCATTAAATTCTTGATG+AGG - chr1_1:65699034-65699053 None:intergenic 30.0%
GAAAGATGATTAATTCTTGG+AGG + chr1_1:65699179-65699198 Msa0036860:intron 30.0%
AAAACAGGTGTAAAAGTGAA+CGG + chr1_1:65699214-65699233 Msa0036860:intron 30.0%
ATATCGAAGACAATTAGCAA+GGG + chr1_1:65699514-65699533 Msa0036860:CDS 30.0%
ATCTGTCTCTTTGCAAAAAA+TGG + chr1_1:65699814-65699833 Msa0036860:three_prime_UTR 30.0%
!!! CTTATATTTTTTGACTGCGA+CGG + chr1_1:65699948-65699967 Msa0036860:three_prime_UTR 30.0%
GAAAATAAGTAAGCTAGGGT+TGG - chr1_1:65698250-65698269 None:intergenic 35.0%
ATGTTGAAGCTTCATGGTTT+GGG - chr1_1:65698297-65698316 None:intergenic 35.0%
AATGTTGAAGCTTCATGGTT+TGG - chr1_1:65698298-65698317 None:intergenic 35.0%
! CTTCAACATTCCTTGTTTCT+TGG + chr1_1:65698308-65698327 Msa0036860:CDS 35.0%
GTAGAGTGATATAAAAGGGT+AGG - chr1_1:65698420-65698439 None:intergenic 35.0%
! TTTTCCAGCTTATATGCATG+AGG - chr1_1:65698519-65698538 None:intergenic 35.0%
AAATTTAAAAAACAGGGGGC+GGG - chr1_1:65698558-65698577 None:intergenic 35.0%
CATGATTAAACAGTTGAGTC+AGG - chr1_1:65698700-65698719 None:intergenic 35.0%
ATTATCCATCATTCAGCTAG+TGG - chr1_1:65698797-65698816 None:intergenic 35.0%
!!! TCCGATTTTGATTGGAAGTT+CGG - chr1_1:65698888-65698907 None:intergenic 35.0%
CACCATCAAAGTTAAATGCA+CGG + chr1_1:65698926-65698945 Msa0036860:intron 35.0%
! AACCGTGCATTTAACTTTGA+TGG - chr1_1:65698931-65698950 None:intergenic 35.0%
TCGCCAAGTCTAATCAAAAT+TGG - chr1_1:65698968-65698987 None:intergenic 35.0%
AGGGCTGGAATATATAAAAC+AGG + chr1_1:65699199-65699218 Msa0036860:intron 35.0%
CATATCGAAGACAATTAGCA+AGG + chr1_1:65699513-65699532 Msa0036860:CDS 35.0%
!! GTTCTTTTGGAAGTGAACTA+AGG - chr1_1:65699563-65699582 None:intergenic 35.0%
! GTACATTGGCATTGTTCTTT+TGG - chr1_1:65699576-65699595 None:intergenic 35.0%
! CTTGATTTTCTCAACCTCTT+TGG - chr1_1:65699722-65699741 None:intergenic 35.0%
AGGTTGAGAAAATCAAGTCT+AGG + chr1_1:65699725-65699744 Msa0036860:CDS 35.0%
! GTAAAATTATCATGGTGGTG+TGG + chr1_1:65699762-65699781 Msa0036860:exon 35.0%
AAGGAAAAAGTAAGAGCAAG+TGG + chr1_1:65699847-65699866 Msa0036860:three_prime_UTR 35.0%
CGTCGCAGTCAAAAAATATA+AGG - chr1_1:65699950-65699969 None:intergenic 35.0%
GAAAATAAGTAAGCTAGGGT+TGG - chr1_1:65698250-65698269 None:intergenic 35.0%
ATGTTGAAGCTTCATGGTTT+GGG - chr1_1:65698297-65698316 None:intergenic 35.0%
AATGTTGAAGCTTCATGGTT+TGG - chr1_1:65698298-65698317 None:intergenic 35.0%
! CTTCAACATTCCTTGTTTCT+TGG + chr1_1:65698308-65698327 Msa0036860:CDS 35.0%
GTAGAGTGATATAAAAGGGT+AGG - chr1_1:65698420-65698439 None:intergenic 35.0%
! TTTTCCAGCTTATATGCATG+AGG - chr1_1:65698519-65698538 None:intergenic 35.0%
AAATTTAAAAAACAGGGGGC+GGG - chr1_1:65698558-65698577 None:intergenic 35.0%
CATGATTAAACAGTTGAGTC+AGG - chr1_1:65698700-65698719 None:intergenic 35.0%
ATTATCCATCATTCAGCTAG+TGG - chr1_1:65698797-65698816 None:intergenic 35.0%
!!! TCCGATTTTGATTGGAAGTT+CGG - chr1_1:65698888-65698907 None:intergenic 35.0%
CACCATCAAAGTTAAATGCA+CGG + chr1_1:65698926-65698945 Msa0036860:intron 35.0%
! AACCGTGCATTTAACTTTGA+TGG - chr1_1:65698931-65698950 None:intergenic 35.0%
TCGCCAAGTCTAATCAAAAT+TGG - chr1_1:65698968-65698987 None:intergenic 35.0%
AGGGCTGGAATATATAAAAC+AGG + chr1_1:65699199-65699218 Msa0036860:intron 35.0%
CATATCGAAGACAATTAGCA+AGG + chr1_1:65699513-65699532 Msa0036860:CDS 35.0%
!! GTTCTTTTGGAAGTGAACTA+AGG - chr1_1:65699563-65699582 None:intergenic 35.0%
! GTACATTGGCATTGTTCTTT+TGG - chr1_1:65699576-65699595 None:intergenic 35.0%
! CTTGATTTTCTCAACCTCTT+TGG - chr1_1:65699722-65699741 None:intergenic 35.0%
AGGTTGAGAAAATCAAGTCT+AGG + chr1_1:65699725-65699744 Msa0036860:CDS 35.0%
! GTAAAATTATCATGGTGGTG+TGG + chr1_1:65699762-65699781 Msa0036860:exon 35.0%
AAGGAAAAAGTAAGAGCAAG+TGG + chr1_1:65699847-65699866 Msa0036860:three_prime_UTR 35.0%
CGTCGCAGTCAAAAAATATA+AGG - chr1_1:65699950-65699969 None:intergenic 35.0%
CTCTTCCATACCATTTCTGT+TGG + chr1_1:65698223-65698242 Msa0036860:five_prime_UTR 40.0%
TTGGACCAACAGAAATGGTA+TGG - chr1_1:65698231-65698250 None:intergenic 40.0%
CAAGGAATGTTGAAGCTTCA+TGG - chr1_1:65698303-65698322 None:intergenic 40.0%
! TTCCTTGTTTCTTGGGACTT+TGG + chr1_1:65698316-65698335 Msa0036860:CDS 40.0%
TATAAAAGGGTAGGTACCTG+AGG - chr1_1:65698411-65698430 None:intergenic 40.0%
CTTTCCTCATGCATATAAGC+TGG + chr1_1:65698512-65698531 Msa0036860:intron 40.0%
! CTAGTGGTGCTAAGAAATGT+GGG - chr1_1:65698781-65698800 None:intergenic 40.0%
GCCGAACTTCCAATCAAAAT+CGG + chr1_1:65698884-65698903 Msa0036860:intron 40.0%
ATGATTAATTCTTGGAGGGC+TGG + chr1_1:65699184-65699203 Msa0036860:intron 40.0%
!! GAAATCAGAGGCATTTACCT+TGG - chr1_1:65699260-65699279 None:intergenic 40.0%
TATGTTGGAGGAGAAATCAG+AGG - chr1_1:65699272-65699291 None:intergenic 40.0%
TTGAAGGGCAACTAGATGTT+GGG + chr1_1:65699467-65699486 Msa0036860:CDS 40.0%
TGTCTTCGATATGAGCACAT+TGG - chr1_1:65699506-65699525 None:intergenic 40.0%
! GGAAGTGAACTAAGGCTTTT+GGG - chr1_1:65699555-65699574 None:intergenic 40.0%
! TGGAAGTGAACTAAGGCTTT+TGG - chr1_1:65699556-65699575 None:intergenic 40.0%
TGCAAACAAGGTAGTAGCAA+TGG - chr1_1:65699647-65699666 None:intergenic 40.0%
! AACACATTGTCTGGAACAGA+AGG - chr1_1:65699676-65699695 None:intergenic 40.0%
AGGCAAGAGAATTGTCATGA+TGG - chr1_1:65699930-65699949 None:intergenic 40.0%
!!! ATTTTTTGACTGCGACGGAA+TGG + chr1_1:65699953-65699972 Msa0036860:three_prime_UTR 40.0%
CTCTTCCATACCATTTCTGT+TGG + chr1_1:65698223-65698242 Msa0036860:five_prime_UTR 40.0%
TTGGACCAACAGAAATGGTA+TGG - chr1_1:65698231-65698250 None:intergenic 40.0%
CAAGGAATGTTGAAGCTTCA+TGG - chr1_1:65698303-65698322 None:intergenic 40.0%
! TTCCTTGTTTCTTGGGACTT+TGG + chr1_1:65698316-65698335 Msa0036860:CDS 40.0%
TATAAAAGGGTAGGTACCTG+AGG - chr1_1:65698411-65698430 None:intergenic 40.0%
CTTTCCTCATGCATATAAGC+TGG + chr1_1:65698512-65698531 Msa0036860:intron 40.0%
! CTAGTGGTGCTAAGAAATGT+GGG - chr1_1:65698781-65698800 None:intergenic 40.0%
GCCGAACTTCCAATCAAAAT+CGG + chr1_1:65698884-65698903 Msa0036860:intron 40.0%
ATGATTAATTCTTGGAGGGC+TGG + chr1_1:65699184-65699203 Msa0036860:intron 40.0%
!! GAAATCAGAGGCATTTACCT+TGG - chr1_1:65699260-65699279 None:intergenic 40.0%
TATGTTGGAGGAGAAATCAG+AGG - chr1_1:65699272-65699291 None:intergenic 40.0%
TTGAAGGGCAACTAGATGTT+GGG + chr1_1:65699467-65699486 Msa0036860:CDS 40.0%
TGTCTTCGATATGAGCACAT+TGG - chr1_1:65699506-65699525 None:intergenic 40.0%
! GGAAGTGAACTAAGGCTTTT+GGG - chr1_1:65699555-65699574 None:intergenic 40.0%
! TGGAAGTGAACTAAGGCTTT+TGG - chr1_1:65699556-65699575 None:intergenic 40.0%
TGCAAACAAGGTAGTAGCAA+TGG - chr1_1:65699647-65699666 None:intergenic 40.0%
! AACACATTGTCTGGAACAGA+AGG - chr1_1:65699676-65699695 None:intergenic 40.0%
AGGCAAGAGAATTGTCATGA+TGG - chr1_1:65699930-65699949 None:intergenic 40.0%
!!! ATTTTTTGACTGCGACGGAA+TGG + chr1_1:65699953-65699972 Msa0036860:three_prime_UTR 40.0%
TAGGGTTGGACCAACAGAAA+TGG - chr1_1:65698236-65698255 None:intergenic 45.0%
AGCCAAAGTCCCAAGAAACA+AGG - chr1_1:65698321-65698340 None:intergenic 45.0%
AGGATCTGATGAGAAAGAGG+TGG - chr1_1:65698354-65698373 None:intergenic 45.0%
GTCAGGATCTGATGAGAAAG+AGG - chr1_1:65698357-65698376 None:intergenic 45.0%
CAGAGGTCTTGAAGATAGTC+AGG - chr1_1:65698374-65698393 None:intergenic 45.0%
AAAGCAGTTTGGTAGGAGTG+AGG - chr1_1:65698664-65698683 None:intergenic 45.0%
GGTGCTAAGAAATGTGGGTA+AGG - chr1_1:65698776-65698795 None:intergenic 45.0%
! GCTAGTGGTGCTAAGAAATG+TGG - chr1_1:65698782-65698801 None:intergenic 45.0%
TAGCACCACTAGCTGAATGA+TGG + chr1_1:65698789-65698808 Msa0036860:intron 45.0%
CCATATCTCTACTCTCAAGG+TGG - chr1_1:65699072-65699091 None:intergenic 45.0%
CCACCTTGAGAGTAGAGATA+TGG + chr1_1:65699069-65699088 Msa0036860:intron 45.0%
GAGCCATATCTCTACTCTCA+AGG - chr1_1:65699075-65699094 None:intergenic 45.0%
!! CAAAGCTGACTTGTGAGTTG+AGG - chr1_1:65699125-65699144 None:intergenic 45.0%
! GAACGGATTCACTTGCAAAG+AGG + chr1_1:65699231-65699250 Msa0036860:CDS 45.0%
! TGGTTTGGCTAGTATGTTGG+AGG - chr1_1:65699284-65699303 None:intergenic 45.0%
TCCAACATACTAGCCAAACC+AGG + chr1_1:65699283-65699302 Msa0036860:CDS 45.0%
!! TCCTGGTTTGGCTAGTATGT+TGG - chr1_1:65699287-65699306 None:intergenic 45.0%
! AATGTGTTGTTGGTGCTTCC+TGG - chr1_1:65699304-65699323 None:intergenic 45.0%
!! GGAAGCACCAACAACACATT+TGG + chr1_1:65699304-65699323 Msa0036860:CDS 45.0%
CACTGAGCCAAATGTGTTGT+TGG - chr1_1:65699314-65699333 None:intergenic 45.0%
! CAACAACACATTTGGCTCAG+TGG + chr1_1:65699312-65699331 Msa0036860:CDS 45.0%
TCCTGGAACTTTCTGAACGT+TGG - chr1_1:65699347-65699366 None:intergenic 45.0%
TTCAAGCACAAACACGACCT+CGG - chr1_1:65699452-65699471 None:intergenic 45.0%
AGGTCGTGTTTGTGCTTGAA+GGG + chr1_1:65699452-65699471 Msa0036860:CDS 45.0%
CTTGAAGGGCAACTAGATGT+TGG + chr1_1:65699466-65699485 Msa0036860:CDS 45.0%
AAGAACAGCAGCAGGTACAT+TGG - chr1_1:65699590-65699609 None:intergenic 45.0%
AATGCAGAAAGAACAGCAGC+AGG - chr1_1:65699598-65699617 None:intergenic 45.0%
! ATTGTCTGGAACAGAAGGTG+TGG - chr1_1:65699671-65699690 None:intergenic 45.0%
GTCTTGGTCAACACATTGTC+TGG - chr1_1:65699685-65699704 None:intergenic 45.0%
! TGTGTTGACCAAGACATTCC+AGG + chr1_1:65699690-65699709 Msa0036860:CDS 45.0%
TTGACCAAGACATTCCAGGT+GGG + chr1_1:65699694-65699713 Msa0036860:CDS 45.0%
TAGGGTTGGACCAACAGAAA+TGG - chr1_1:65698236-65698255 None:intergenic 45.0%
AGCCAAAGTCCCAAGAAACA+AGG - chr1_1:65698321-65698340 None:intergenic 45.0%
AGGATCTGATGAGAAAGAGG+TGG - chr1_1:65698354-65698373 None:intergenic 45.0%
GTCAGGATCTGATGAGAAAG+AGG - chr1_1:65698357-65698376 None:intergenic 45.0%
CAGAGGTCTTGAAGATAGTC+AGG - chr1_1:65698374-65698393 None:intergenic 45.0%
AAAGCAGTTTGGTAGGAGTG+AGG - chr1_1:65698664-65698683 None:intergenic 45.0%
GGTGCTAAGAAATGTGGGTA+AGG - chr1_1:65698776-65698795 None:intergenic 45.0%
! GCTAGTGGTGCTAAGAAATG+TGG - chr1_1:65698782-65698801 None:intergenic 45.0%
TAGCACCACTAGCTGAATGA+TGG + chr1_1:65698789-65698808 Msa0036860:intron 45.0%
CCATATCTCTACTCTCAAGG+TGG - chr1_1:65699072-65699091 None:intergenic 45.0%
CCACCTTGAGAGTAGAGATA+TGG + chr1_1:65699069-65699088 Msa0036860:intron 45.0%
GAGCCATATCTCTACTCTCA+AGG - chr1_1:65699075-65699094 None:intergenic 45.0%
!! CAAAGCTGACTTGTGAGTTG+AGG - chr1_1:65699125-65699144 None:intergenic 45.0%
! GAACGGATTCACTTGCAAAG+AGG + chr1_1:65699231-65699250 Msa0036860:CDS 45.0%
! TGGTTTGGCTAGTATGTTGG+AGG - chr1_1:65699284-65699303 None:intergenic 45.0%
TCCAACATACTAGCCAAACC+AGG + chr1_1:65699283-65699302 Msa0036860:CDS 45.0%
!! TCCTGGTTTGGCTAGTATGT+TGG - chr1_1:65699287-65699306 None:intergenic 45.0%
! AATGTGTTGTTGGTGCTTCC+TGG - chr1_1:65699304-65699323 None:intergenic 45.0%
!! GGAAGCACCAACAACACATT+TGG + chr1_1:65699304-65699323 Msa0036860:CDS 45.0%
CACTGAGCCAAATGTGTTGT+TGG - chr1_1:65699314-65699333 None:intergenic 45.0%
! CAACAACACATTTGGCTCAG+TGG + chr1_1:65699312-65699331 Msa0036860:CDS 45.0%
TCCTGGAACTTTCTGAACGT+TGG - chr1_1:65699347-65699366 None:intergenic 45.0%
TTCAAGCACAAACACGACCT+CGG - chr1_1:65699452-65699471 None:intergenic 45.0%
AGGTCGTGTTTGTGCTTGAA+GGG + chr1_1:65699452-65699471 Msa0036860:CDS 45.0%
CTTGAAGGGCAACTAGATGT+TGG + chr1_1:65699466-65699485 Msa0036860:CDS 45.0%
AAGAACAGCAGCAGGTACAT+TGG - chr1_1:65699590-65699609 None:intergenic 45.0%
AATGCAGAAAGAACAGCAGC+AGG - chr1_1:65699598-65699617 None:intergenic 45.0%
! ATTGTCTGGAACAGAAGGTG+TGG - chr1_1:65699671-65699690 None:intergenic 45.0%
GTCTTGGTCAACACATTGTC+TGG - chr1_1:65699685-65699704 None:intergenic 45.0%
! TGTGTTGACCAAGACATTCC+AGG + chr1_1:65699690-65699709 Msa0036860:CDS 45.0%
TTGACCAAGACATTCCAGGT+GGG + chr1_1:65699694-65699713 Msa0036860:CDS 45.0%
!! TATATAAAATTTAAAAAACA+GGG - chr1_1:65698564-65698583 None:intergenic 5.0%
!! ATATATAAAATTTAAAAAAC+AGG - chr1_1:65698565-65698584 None:intergenic 5.0%
!! TATATAAAATTTAAAAAACA+GGG - chr1_1:65698564-65698583 None:intergenic 5.0%
!! ATATATAAAATTTAAAAAAC+AGG - chr1_1:65698565-65698584 None:intergenic 5.0%
AAACAGGGGGCGGGAATAAT+GGG - chr1_1:65698549-65698568 None:intergenic 50.0%
AAAACAGGGGGCGGGAATAA+TGG - chr1_1:65698550-65698569 None:intergenic 50.0%
TCTCTACTCTCAAGGTGGCA+TGG - chr1_1:65699067-65699086 None:intergenic 50.0%
!! CACTTGCAAAGAGGCATCCA+AGG + chr1_1:65699240-65699259 Msa0036860:CDS 50.0%
! GTTGTTGGTGCTTCCTGGTT+TGG - chr1_1:65699299-65699318 None:intergenic 50.0%
! ACATTTGGCTCAGTGGTGAC+TGG + chr1_1:65699319-65699338 Msa0036860:CDS 50.0%
GCCAACGTTCAGAAAGTTCC+AGG + chr1_1:65699343-65699362 Msa0036860:CDS 50.0%
GTTCCAGGACTCAACACTCT+TGG + chr1_1:65699358-65699377 Msa0036860:CDS 50.0%
!! ACACCAAGAGTGTTGAGTCC+TGG - chr1_1:65699364-65699383 None:intergenic 50.0%
! CTCTTGGTGTGTCTCTGTCA+AGG + chr1_1:65699374-65699393 Msa0036860:CDS 50.0%
TCAAGGATTGACTATGCCCC+AGG + chr1_1:65699391-65699410 Msa0036860:CDS 50.0%
GAGGTCGTGTTTGTGCTTGA+AGG + chr1_1:65699451-65699470 Msa0036860:CDS 50.0%
! CGATATGAGCACATTGGCTG+TGG - chr1_1:65699500-65699519 None:intergenic 50.0%
GCATTCAACAGCCAACTTCC+TGG + chr1_1:65699613-65699632 Msa0036860:CDS 50.0%
TGGACTGTGTACCAGGAAGT+TGG - chr1_1:65699627-65699646 None:intergenic 50.0%
!! GTAGCAATGGACTGTGTACC+AGG - chr1_1:65699634-65699653 None:intergenic 50.0%
! AGAAGGTGTGGCTGCAAACA+AGG - chr1_1:65699659-65699678 None:intergenic 50.0%
GTTGACCAAGACATTCCAGG+TGG + chr1_1:65699693-65699712 Msa0036860:CDS 50.0%
ATTCCAGGTGGGTACCAAAG+AGG + chr1_1:65699705-65699724 Msa0036860:CDS 50.0%
AAACAGGGGGCGGGAATAAT+GGG - chr1_1:65698549-65698568 None:intergenic 50.0%
AAAACAGGGGGCGGGAATAA+TGG - chr1_1:65698550-65698569 None:intergenic 50.0%
TCTCTACTCTCAAGGTGGCA+TGG - chr1_1:65699067-65699086 None:intergenic 50.0%
!! CACTTGCAAAGAGGCATCCA+AGG + chr1_1:65699240-65699259 Msa0036860:CDS 50.0%
! GTTGTTGGTGCTTCCTGGTT+TGG - chr1_1:65699299-65699318 None:intergenic 50.0%
! ACATTTGGCTCAGTGGTGAC+TGG + chr1_1:65699319-65699338 Msa0036860:CDS 50.0%
GCCAACGTTCAGAAAGTTCC+AGG + chr1_1:65699343-65699362 Msa0036860:CDS 50.0%
GTTCCAGGACTCAACACTCT+TGG + chr1_1:65699358-65699377 Msa0036860:CDS 50.0%
!! ACACCAAGAGTGTTGAGTCC+TGG - chr1_1:65699364-65699383 None:intergenic 50.0%
! CTCTTGGTGTGTCTCTGTCA+AGG + chr1_1:65699374-65699393 Msa0036860:CDS 50.0%
TCAAGGATTGACTATGCCCC+AGG + chr1_1:65699391-65699410 Msa0036860:CDS 50.0%
GAGGTCGTGTTTGTGCTTGA+AGG + chr1_1:65699451-65699470 Msa0036860:CDS 50.0%
! CGATATGAGCACATTGGCTG+TGG - chr1_1:65699500-65699519 None:intergenic 50.0%
GCATTCAACAGCCAACTTCC+TGG + chr1_1:65699613-65699632 Msa0036860:CDS 50.0%
TGGACTGTGTACCAGGAAGT+TGG - chr1_1:65699627-65699646 None:intergenic 50.0%
!! GTAGCAATGGACTGTGTACC+AGG - chr1_1:65699634-65699653 None:intergenic 50.0%
! AGAAGGTGTGGCTGCAAACA+AGG - chr1_1:65699659-65699678 None:intergenic 50.0%
GTTGACCAAGACATTCCAGG+TGG + chr1_1:65699693-65699712 Msa0036860:CDS 50.0%
ATTCCAGGTGGGTACCAAAG+AGG + chr1_1:65699705-65699724 Msa0036860:CDS 50.0%
AGGCAAGGTCAGCAACACAG+AGG - chr1_1:65698391-65698410 None:intergenic 55.0%
! TGTGTTGCTGACCTTGCCTC+AGG + chr1_1:65698392-65698411 Msa0036860:CDS 55.0%
AAGGGTAGGTACCTGAGGCA+AGG - chr1_1:65698406-65698425 None:intergenic 55.0%
AACAGGGGGCGGGAATAATG+GGG - chr1_1:65698548-65698567 None:intergenic 55.0%
CTACTCTCAAGGTGGCATGG+AGG - chr1_1:65699064-65699083 None:intergenic 55.0%
AGGATTGACTATGCCCCAGG+TGG + chr1_1:65699394-65699413 Msa0036860:CDS 55.0%
AAGCACAAACACGACCTCGG+TGG - chr1_1:65699449-65699468 None:intergenic 55.0%
GGTACCCACCTGGAATGTCT+TGG - chr1_1:65699701-65699720 None:intergenic 55.0%
CAACCTCTTTGGTACCCACC+TGG - chr1_1:65699711-65699730 None:intergenic 55.0%
AGGCAAGGTCAGCAACACAG+AGG - chr1_1:65698391-65698410 None:intergenic 55.0%
! TGTGTTGCTGACCTTGCCTC+AGG + chr1_1:65698392-65698411 Msa0036860:CDS 55.0%
AAGGGTAGGTACCTGAGGCA+AGG - chr1_1:65698406-65698425 None:intergenic 55.0%
AACAGGGGGCGGGAATAATG+GGG - chr1_1:65698548-65698567 None:intergenic 55.0%
CTACTCTCAAGGTGGCATGG+AGG - chr1_1:65699064-65699083 None:intergenic 55.0%
AGGATTGACTATGCCCCAGG+TGG + chr1_1:65699394-65699413 Msa0036860:CDS 55.0%
AAGCACAAACACGACCTCGG+TGG - chr1_1:65699449-65699468 None:intergenic 55.0%
GGTACCCACCTGGAATGTCT+TGG - chr1_1:65699701-65699720 None:intergenic 55.0%
CAACCTCTTTGGTACCCACC+TGG - chr1_1:65699711-65699730 None:intergenic 55.0%
ACAGGGGGCGGGAATAATGG+GGG - chr1_1:65698547-65698566 None:intergenic 60.0%
!! GGTGAGTGTGAGGTGGGTTG+AGG - chr1_1:65699420-65699439 None:intergenic 60.0%
ACAGGGGGCGGGAATAATGG+GGG - chr1_1:65698547-65698566 None:intergenic 60.0%
!! GGTGAGTGTGAGGTGGGTTG+AGG - chr1_1:65699420-65699439 None:intergenic 60.0%
!! AGGTGGGTTGAGGCCACCTG+GGG - chr1_1:65699410-65699429 None:intergenic 65.0%
!! GAGGTGGGTTGAGGCCACCT+GGG - chr1_1:65699411-65699430 None:intergenic 65.0%
!! TGAGGTGGGTTGAGGCCACC+TGG - chr1_1:65699412-65699431 None:intergenic 65.0%
CGCGTGGGTGAGTGTGAGGT+GGG - chr1_1:65699426-65699445 None:intergenic 65.0%
!! AGGTGGGTTGAGGCCACCTG+GGG - chr1_1:65699410-65699429 None:intergenic 65.0%
!! GAGGTGGGTTGAGGCCACCT+GGG - chr1_1:65699411-65699430 None:intergenic 65.0%
!! TGAGGTGGGTTGAGGCCACC+TGG - chr1_1:65699412-65699431 None:intergenic 65.0%
CGCGTGGGTGAGTGTGAGGT+GGG - chr1_1:65699426-65699445 None:intergenic 65.0%
GCGCGTGGGTGAGTGTGAGG+TGG - chr1_1:65699427-65699446 None:intergenic 70.0%
GTGGCGCGTGGGTGAGTGTG+AGG - chr1_1:65699430-65699449 None:intergenic 70.0%
ACACGACCTCGGTGGCGCGT+GGG - chr1_1:65699441-65699460 None:intergenic 70.0%
AACACGACCTCGGTGGCGCG+TGG - chr1_1:65699442-65699461 None:intergenic 70.0%
GCGCGTGGGTGAGTGTGAGG+TGG - chr1_1:65699427-65699446 None:intergenic 70.0%
GTGGCGCGTGGGTGAGTGTG+AGG - chr1_1:65699430-65699449 None:intergenic 70.0%
ACACGACCTCGGTGGCGCGT+GGG - chr1_1:65699441-65699460 None:intergenic 70.0%
AACACGACCTCGGTGGCGCG+TGG - chr1_1:65699442-65699461 None:intergenic 70.0%
CACTCACCCACGCGCCACCG+AGG + chr1_1:65699432-65699451 Msa0036860:CDS 75.0%
CACTCACCCACGCGCCACCG+AGG + chr1_1:65699432-65699451 Msa0036860:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 65698162 65700109 65698162 ID=Msa0036860;Name=Msa0036860
chr1_1 mRNA 65698162 65700109 65698162 ID=Msa0036860-mRNA-1;Parent=Msa0036860;Name=Msa0036860-mRNA-1;_AED=0.00;_eAED=0.00;_QI=140|1|1|1|1|1|2|344|218
chr1_1 exon 65698162 65698413 65698162 ID=Msa0036860-mRNA-1:exon:21140;Parent=Msa0036860-mRNA-1
chr1_1 exon 65699221 65700109 65699221 ID=Msa0036860-mRNA-1:exon:21141;Parent=Msa0036860-mRNA-1
chr1_1 five_prime_UTR 65698162 65698301 65698162 ID=Msa0036860-mRNA-1:five_prime_utr;Parent=Msa0036860-mRNA-1
chr1_1 CDS 65698302 65698413 65698302 ID=Msa0036860-mRNA-1:cds;Parent=Msa0036860-mRNA-1
chr1_1 CDS 65699221 65699765 65699221 ID=Msa0036860-mRNA-1:cds;Parent=Msa0036860-mRNA-1
chr1_1 three_prime_UTR 65699766 65700109 65699766 ID=Msa0036860-mRNA-1:three_prime_utr;Parent=Msa0036860-mRNA-1
Gene Sequence

>Msa0036860

ATGAAGCTTCAACATTCCTTGTTTCTTGGGACTTTGGCTCTGCTCTTAGCCACCTCTTTCTCATCAGATCCTGACTATCTTCAAGACCTCTGTGTTGCTGACCTTGCCTCAGGTGTAAAAGTGAACGGATTCACTTGCAAAGAGGCATCCAAGGTAAATGCCTCTGATTTCTCCTCCAACATACTAGCCAAACCAGGAAGCACCAACAACACATTTGGCTCAGTGGTGACTGGAGCCAACGTTCAGAAAGTTCCAGGACTCAACACTCTTGGTGTGTCTCTGTCAAGGATTGACTATGCCCCAGGTGGCCTCAACCCACCTCACACTCACCCACGCGCCACCGAGGTCGTGTTTGTGCTTGAAGGGCAACTAGATGTTGGGTTCATAACCACAGCCAATGTGCTCATATCGAAGACAATTAGCAAGGGTGAGATATTTGTGTTCCCAAAAGCCTTAGTTCACTTCCAAAAGAACAATGCCAATGTACCTGCTGCTGTTCTTTCTGCATTCAACAGCCAACTTCCTGGTACACAGTCCATTGCTACTACCTTGTTTGCAGCCACACCTTCTGTTCCAGACAATGTGTTGACCAAGACATTCCAGGTGGGTACCAAAGAGGTTGAGAAAATCAAGTCTAGGCTTGCACCCAAAAAGTAA
Protein sequence

>Msa0036860

MKLQHSLFLGTLALLLATSFSSDPDYLQDLCVADLASGVKVNGFTCKEASKVNASDFSSNILAKPGSTNNTFGSVVTGANVQKVPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEVVFVLEGQLDVGFITTANVLISKTISKGEIFVFPKALVHFQKNNANVPAAVLSAFNSQLPGTQSIATTLFAATPSVPDNVLTKTFQVGTKEVEKIKSRLAPKK*