AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1432960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1432960 MtrunA17_Chr1g0193421 97.248 218 6 0 1 218 2 219 2.02e-153 424
Msa1432960 MtrunA17_Chr7g0271211 79.592 196 40 0 22 217 19 214 5.72e-114 324
Msa1432960 MtrunA17_Chr1g0193671 67.299 211 69 0 8 218 8 218 2.44e-100 290
Msa1432960 MtrunA17_Chr5g0414971 46.667 195 103 1 22 215 26 220 5.03e-57 180
Msa1432960 MtrunA17_Chr4g0007041 44.954 218 112 4 1 213 1 215 9.15e-57 179
Msa1432960 MtrunA17_Chr4g0007051 44.954 218 112 4 1 213 1 215 2.60e-56 178
Msa1432960 MtrunA17_Chr4g0007031 44.954 218 112 4 1 213 1 215 3.13e-56 178
Msa1432960 MtrunA17_Chr5g0419971 44.954 218 112 4 1 213 1 215 3.13e-56 178
Msa1432960 MtrunA17_Chr5g0419981 44.954 218 112 4 1 213 1 215 3.13e-56 178
Msa1432960 MtrunA17_Chr2g0285871 44.954 218 112 4 1 213 1 215 5.38e-56 177
Msa1432960 MtrunA17_Chr1g0189841 46.154 208 106 3 12 214 11 217 5.92e-56 177
Msa1432960 MtrunA17_Chr6g0449731 45.755 212 109 3 7 214 6 215 8.70e-56 177
Msa1432960 MtrunA17_Chr6g0449761 45.755 212 109 3 7 214 6 215 8.78e-56 177
Msa1432960 MtrunA17_Chr6g0449751 45.755 212 109 3 7 214 6 215 1.92e-55 176
Msa1432960 MtrunA17_Chr6g0449771 45.283 212 110 3 7 214 6 215 6.35e-55 174
Msa1432960 MtrunA17_Chr1g0156131 43.415 205 108 2 12 214 11 209 1.17e-53 171
Msa1432960 MtrunA17_Chr1g0210761 41.827 208 114 3 9 216 9 209 1.16e-52 168
Msa1432960 MtrunA17_Chr6g0449791 44.776 201 104 3 7 202 6 204 2.58e-50 162
Msa1432960 MtrunA17_Chr2g0292831 42.424 198 107 3 20 214 19 212 4.29e-49 159
Msa1432960 MtrunA17_Chr2g0292901 42.408 191 103 3 27 214 27 213 1.88e-47 155
Msa1432960 MtrunA17_Chr6g0449781 41.038 212 118 4 7 214 6 214 8.56e-47 154
Msa1432960 MtrunA17_Chr1g0178711 37.273 220 127 5 7 218 9 225 1.31e-44 148
Msa1432960 MtrunA17_Chr8g0343911 39.409 203 117 2 12 214 8 204 3.42e-41 139
Msa1432960 MtrunA17_Chr2g0292861 41.860 172 97 2 46 214 7 178 5.13e-41 137
Msa1432960 MtrunA17_Chr2g0292841 41.279 172 98 2 46 214 7 178 1.04e-39 134
Msa1432960 MtrunA17_Chr2g0300561 39.785 186 110 1 29 214 23 206 9.76e-39 133
Msa1432960 MtrunA17_Chr8g0343934 35.023 217 132 4 1 217 1 208 2.00e-38 132
Msa1432960 MtrunA17_Chr2g0313961 36.449 214 127 4 1 214 1 205 4.53e-38 131
Msa1432960 MtrunA17_Chr2g0300581 38.503 187 113 1 29 215 23 207 1.02e-37 130
Msa1432960 MtrunA17_Chr2g0301611 36.279 215 128 4 1 215 1 206 1.55e-37 130
Msa1432960 MtrunA17_Chr2g0300591 37.566 189 116 1 29 217 23 209 3.41e-37 129
Msa1432960 MtrunA17_Chr2g0297231 35.814 215 129 4 1 215 1 206 1.15e-36 127
Msa1432960 MtrunA17_Chr3g0130241 38.182 220 113 6 1 214 63 265 1.27e-36 129
Msa1432960 MtrunA17_Chr8g0343961 35.484 217 131 5 1 217 1 208 1.92e-36 127
Msa1432960 MtrunA17_Chr8g0343954 35.602 191 119 3 27 217 22 208 2.98e-36 126
Msa1432960 MtrunA17_Chr2g0302171 36.744 215 127 4 1 215 1 206 3.08e-36 126
Msa1432960 MtrunA17_Chr3g0084531 35.349 215 130 4 1 215 1 206 2.04e-35 124
Msa1432960 MtrunA17_Chr3g0084511 34.419 215 131 4 1 215 1 205 2.54e-35 124
Msa1432960 MtrunA17_Chr2g0292911 51.304 115 54 1 46 158 7 121 5.95e-35 121
Msa1432960 MtrunA17_Chr4g0003361 40.722 194 110 4 21 214 13 201 7.49e-35 122
Msa1432960 MtrunA17_Chr2g0297241 35.349 215 130 4 1 215 1 206 7.98e-35 122
Msa1432960 MtrunA17_Chr3g0084521 35.814 215 128 5 1 215 1 205 1.67e-34 122
Msa1432960 MtrunA17_Chr8g0335851 42.012 169 95 2 22 188 25 192 3.85e-34 121
Msa1432960 MtrunA17_Chr2g0321601 37.624 202 102 6 15 211 18 200 2.18e-33 119
Msa1432960 MtrunA17_Chr5g0411961 31.163 215 139 4 1 215 1 206 8.21e-33 117
Msa1432960 MtrunA17_Chr2g0321581 36.000 200 108 5 15 211 19 201 1.89e-32 116
Msa1432960 MtrunA17_Chr2g0302541 35.979 189 117 3 27 215 22 206 2.22e-32 116
Msa1432960 MtrunA17_Chr2g0321591 36.000 200 108 5 15 211 19 201 2.32e-32 116
Msa1432960 MtrunA17_Chr8g0343921 34.171 199 127 2 14 212 7 201 1.55e-31 114
Msa1432960 MtrunA17_Chr4g0026191 35.849 212 120 7 1 211 6 202 1.63e-31 114
Msa1432960 MtrunA17_Chr4g0012651 35.263 190 119 3 26 215 21 206 2.72e-31 114
Msa1432960 MtrunA17_Chr7g0217811 34.737 190 120 3 26 215 21 206 2.96e-31 113
Msa1432960 MtrunA17_Chr8g0344021 36.082 194 120 3 19 211 15 205 2.95e-30 111
Msa1432960 MtrunA17_Chr4g0026201 41.791 134 75 2 79 211 71 202 3.95e-30 110
Msa1432960 MtrunA17_Chr8g0344051 36.667 210 124 5 3 211 4 205 4.07e-29 108
Msa1432960 MtrunA17_Chr8g0344041 34.653 202 127 4 14 214 12 209 3.18e-28 105
Msa1432960 MtrunA17_Chr2g0286171 31.019 216 139 7 1 214 1 208 2.78e-27 103
Msa1432960 MtrunA17_Chr3g0115141 31.163 215 138 6 1 214 1 206 4.49e-25 97.8
Msa1432960 MtrunA17_Chr8g0344031 37.791 172 103 4 16 186 13 181 6.95e-24 94.7
Msa1432960 MtrunA17_Chr3g0084551 31.019 216 132 6 1 215 1 200 4.77e-21 87.4
Msa1432960 MtrunA17_Chr3g0084501 41.441 111 59 2 1 111 1 105 1.32e-17 75.5
Msa1432960 MtrunA17_Chr2g0292881 54.386 57 24 1 94 148 1 57 7.14e-15 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1432960 AT3G62020.1 70.283 212 62 1 8 218 8 219 4.59e-107 307
Msa1432960 AT1G09560.1 71.000 200 58 0 19 218 20 219 9.18e-105 301
Msa1432960 AT1G02335.1 64.679 218 77 0 1 218 2 219 9.39e-102 294
Msa1432960 AT3G62020.2 73.077 182 48 1 38 218 9 190 9.90e-97 280
Msa1432960 AT5G26700.1 62.371 194 70 1 25 218 23 213 1.23e-88 260
Msa1432960 AT3G05930.1 56.459 209 90 1 11 218 11 219 1.73e-83 247
Msa1432960 AT1G18980.1 49.519 208 103 1 8 215 14 219 1.28e-65 202
Msa1432960 AT1G18970.1 49.519 208 103 1 8 215 14 219 6.87e-65 200
Msa1432960 AT3G05950.1 50.000 210 99 3 12 215 13 222 9.58e-61 190
Msa1432960 AT4G14630.1 49.065 214 100 3 6 214 13 222 3.91e-60 188
Msa1432960 AT5G39110.1 44.545 220 116 3 1 214 1 220 2.86e-59 186
Msa1432960 AT5G39150.1 44.749 219 116 2 1 214 1 219 3.30e-59 186
Msa1432960 AT5G39180.1 44.292 219 117 2 1 214 1 219 1.69e-58 184
Msa1432960 AT5G39120.1 44.292 219 117 2 1 214 1 219 1.80e-58 184
Msa1432960 AT5G39160.1 42.727 220 121 3 1 215 1 220 2.72e-58 183
Msa1432960 AT5G39130.1 42.727 220 121 3 1 215 1 220 3.64e-58 183
Msa1432960 AT5G39190.1 42.727 220 121 3 1 215 1 220 4.89e-58 183
Msa1432960 AT3G04200.1 47.393 211 105 3 12 216 14 224 1.88e-56 179
Msa1432960 AT5G39160.3 41.176 221 119 4 1 215 1 216 7.40e-55 174
Msa1432960 AT5G38910.1 45.714 210 110 2 9 214 10 219 2.73e-53 171
Msa1432960 AT5G38940.1 46.193 197 102 2 22 214 25 221 1.27e-52 169
Msa1432960 AT5G38930.1 46.000 200 104 2 19 214 22 221 2.05e-52 169
Msa1432960 AT5G38940.2 46.193 197 102 2 22 214 49 245 2.23e-52 169
Msa1432960 AT5G38960.1 44.878 205 108 3 16 215 19 223 4.87e-52 167
Msa1432960 AT3G04170.1 41.964 224 120 5 1 217 1 221 9.04e-50 162
Msa1432960 AT5G39190.2 38.462 221 107 4 1 215 1 198 2.30e-48 157
Msa1432960 AT3G04180.1 41.117 197 112 2 20 212 23 219 3.99e-48 157
Msa1432960 AT5G39160.2 38.462 221 107 4 1 215 1 198 4.56e-48 157
Msa1432960 AT3G04150.1 39.806 206 118 3 12 211 13 218 1.22e-47 156
Msa1432960 AT3G04190.1 41.117 197 112 2 20 212 23 219 2.38e-47 155
Msa1432960 AT3G04150.2 37.443 219 118 3 12 211 13 231 1.14e-46 154
Msa1432960 AT1G10460.1 38.889 198 116 3 22 214 18 215 1.69e-42 143
Msa1432960 AT3G10080.1 37.745 204 117 5 19 216 22 221 5.11e-42 142
Msa1432960 AT3G10080.2 37.745 204 117 5 19 216 93 292 1.82e-41 142
Msa1432960 AT5G20630.1 38.140 215 126 3 1 215 1 208 1.36e-40 138
Msa1432960 AT1G74820.1 38.298 188 114 1 27 214 40 225 2.04e-40 138
Msa1432960 AT1G72610.1 39.683 189 112 1 27 215 19 205 4.46e-40 136
Msa1432960 AT5G61750.1 41.212 165 95 1 19 181 15 179 6.85e-36 126
Msa1432960 AT5G38910.2 37.500 208 93 2 9 214 10 182 1.84e-34 121

Find 86 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCAACATTCCTTGTTTCT+TGG 0.234930 tig0027216:+14962 Msa1432960:CDS
AGTAAATAAGTTGATAAATA+TGG 0.244348 tig0027216:-14854 None:intergenic
GTACATTGGCATTGTTCTTT+TGG 0.249139 tig0027216:-16227 None:intergenic
TGGAAGTGAACTAAGGCTTT+TGG 0.286891 tig0027216:-16207 None:intergenic
AATGTGTTGTTGGTGCTTCC+TGG 0.292080 tig0027216:-15955 None:intergenic
CAAGGAATGTTGAAGCTTCA+TGG 0.299280 tig0027216:-14954 None:intergenic
TGAGGTGGGTTGAGGCCACC+TGG 0.332492 tig0027216:-16063 None:intergenic
TTCCTTGTTTCTTGGGACTT+TGG 0.347949 tig0027216:+14970 Msa1432960:CDS
TTCAACATTCCTTGTTTCTT+GGG 0.352017 tig0027216:+14963 Msa1432960:CDS
GTTGTTGGTGCTTCCTGGTT+TGG 0.357417 tig0027216:-15950 None:intergenic
AATGTTGAAGCTTCATGGTT+TGG 0.373409 tig0027216:-14949 None:intergenic
ATGTTGAAGCTTCATGGTTT+GGG 0.386713 tig0027216:-14948 None:intergenic
GCATTCAACAGCCAACTTCC+TGG 0.396208 tig0027216:+16267 Msa1432960:CDS
CTCTTCCATACCATTTCTGT+TGG 0.408455 tig0027216:+14877 Msa1432960:five_prime_UTR
GTCTTGGTCAACACATTGTC+TGG 0.423933 tig0027216:-16336 None:intergenic
TCCTGGTTTGGCTAGTATGT+TGG 0.425869 tig0027216:-15938 None:intergenic
TGGTTTGGCTAGTATGTTGG+AGG 0.436671 tig0027216:-15935 None:intergenic
AAGAAACAAATGAGTTGGTT+GGG 0.437841 tig0027216:-14816 None:intergenic
CAGAGGTCTTGAAGATAGTC+AGG 0.446367 tig0027216:-15025 None:intergenic
GGAAGCACCAACAACACATT+TGG 0.455191 tig0027216:+15958 Msa1432960:CDS
GAGGTGGGTTGAGGCCACCT+GGG 0.458114 tig0027216:-16062 None:intergenic
AAACTGAAAATAAGTAAGCT+AGG 0.468890 tig0027216:-14906 None:intergenic
GCGCGTGGGTGAGTGTGAGG+TGG 0.468916 tig0027216:-16078 None:intergenic
GTAGCAATGGACTGTGTACC+AGG 0.469832 tig0027216:-16285 None:intergenic
CACTGAGCCAAATGTGTTGT+TGG 0.470338 tig0027216:-15965 None:intergenic
AAAGAAACAAATGAGTTGGT+TGG 0.471193 tig0027216:-14817 None:intergenic
TGTGTTGCTGACCTTGCCTC+AGG 0.480555 tig0027216:+15046 Msa1432960:CDS
TTGAAGGGCAACTAGATGTT+GGG 0.481045 tig0027216:+16121 Msa1432960:CDS
GGTACCCACCTGGAATGTCT+TGG 0.486086 tig0027216:-16352 None:intergenic
ACATTTGGCTCAGTGGTGAC+TGG 0.488632 tig0027216:+15973 Msa1432960:CDS
TGTGTTGACCAAGACATTCC+AGG 0.491853 tig0027216:+16344 Msa1432960:CDS
GAGGTCGTGTTTGTGCTTGA+AGG 0.496245 tig0027216:+16105 Msa1432960:CDS
GCCAACGTTCAGAAAGTTCC+AGG 0.497137 tig0027216:+15997 Msa1432960:CDS
GTCAGGATCTGATGAGAAAG+AGG 0.500868 tig0027216:-15008 None:intergenic
GGTGAGTGTGAGGTGGGTTG+AGG 0.500963 tig0027216:-16071 None:intergenic
TAGGGTTGGACCAACAGAAA+TGG 0.502399 tig0027216:-14887 None:intergenic
AACACGACCTCGGTGGCGCG+TGG 0.502632 tig0027216:-16093 None:intergenic
CGATATGAGCACATTGGCTG+TGG 0.503399 tig0027216:-16151 None:intergenic
CAACCTCTTTGGTACCCACC+TGG 0.508354 tig0027216:-16362 None:intergenic
CGCGTGGGTGAGTGTGAGGT+GGG 0.508401 tig0027216:-16077 None:intergenic
GAAAATAAGTAAGCTAGGGT+TGG 0.509742 tig0027216:-14901 None:intergenic
TCAAGGATTGACTATGCCCC+AGG 0.510714 tig0027216:+16045 Msa1432960:CDS
GAAATCAGAGGCATTTACCT+TGG 0.510737 tig0027216:-15911 None:intergenic
GAAGAAAGAAACAAATGAGT+TGG 0.528794 tig0027216:-14821 None:intergenic
AGGTCGTGTTTGTGCTTGAA+GGG 0.529030 tig0027216:+16106 Msa1432960:CDS
TTGGACCAACAGAAATGGTA+TGG 0.534444 tig0027216:-14882 None:intergenic
TCCTGGAACTTTCTGAACGT+TGG 0.535174 tig0027216:-15998 None:intergenic
AGGTGGGTTGAGGCCACCTG+GGG 0.540934 tig0027216:-16061 None:intergenic
ACACCAAGAGTGTTGAGTCC+TGG 0.541220 tig0027216:-16015 None:intergenic
GTTCCAGGACTCAACACTCT+TGG 0.543606 tig0027216:+16012 Msa1432960:CDS
CACTTGCAAAGAGGCATCCA+AGG 0.544665 tig0027216:+15894 Msa1432960:CDS
AGAAGGTGTGGCTGCAAACA+AGG 0.550133 tig0027216:-16310 None:intergenic
CTTGAAGGGCAACTAGATGT+TGG 0.567104 tig0027216:+16120 Msa1432960:CDS
CTCTTGGTGTGTCTCTGTCA+AGG 0.569695 tig0027216:+16028 Msa1432960:CDS
AAGAACAGCAGCAGGTACAT+TGG 0.570295 tig0027216:-16241 None:intergenic
AACTGAAAATAAGTAAGCTA+GGG 0.576272 tig0027216:-14905 None:intergenic
AATGCAGAAAGAACAGCAGC+AGG 0.579009 tig0027216:-16249 None:intergenic
TCCAACATACTAGCCAAACC+AGG 0.587723 tig0027216:+15937 Msa1432960:CDS
AGGTTGAGAAAATCAAGTCT+AGG 0.589416 tig0027216:+16379 Msa1432960:CDS
ACACGACCTCGGTGGCGCGT+GGG 0.591683 tig0027216:-16092 None:intergenic
TGCAAACAAGGTAGTAGCAA+TGG 0.593622 tig0027216:-16298 None:intergenic
CAACAACACATTTGGCTCAG+TGG 0.597237 tig0027216:+15966 Msa1432960:CDS
AAAACAGGTGTAAAAGTGAA+CGG 0.600498 tig0027216:+15868 Msa1432960:intron
GTGGCGCGTGGGTGAGTGTG+AGG 0.601342 tig0027216:-16081 None:intergenic
AGGCAAGAGAATTGTCATGA+TGG 0.601614 tig0027216:-16581 None:intergenic
CATATCGAAGACAATTAGCA+AGG 0.601659 tig0027216:+16167 Msa1432960:CDS
AGCCAAAGTCCCAAGAAACA+AGG 0.604324 tig0027216:-14972 None:intergenic
AACACATTGTCTGGAACAGA+AGG 0.604334 tig0027216:-16327 None:intergenic
TGGACTGTGTACCAGGAAGT+TGG 0.611304 tig0027216:-16278 None:intergenic
TGTCTTCGATATGAGCACAT+TGG 0.624219 tig0027216:-16157 None:intergenic
ATTCCAGGTGGGTACCAAAG+AGG 0.627495 tig0027216:+16359 Msa1432960:CDS
TTCAAGCACAAACACGACCT+CGG 0.628811 tig0027216:-16103 None:intergenic
ATAAGTTGATAAATATGGAG+AGG 0.633439 tig0027216:-14849 None:intergenic
AAGGGTAGGTACCTGAGGCA+AGG 0.640278 tig0027216:-15057 None:intergenic
CACTCACCCACGCGCCACCG+AGG 0.654415 tig0027216:+16086 Msa1432960:CDS
TATGTTGGAGGAGAAATCAG+AGG 0.658115 tig0027216:-15923 None:intergenic
GAACGGATTCACTTGCAAAG+AGG 0.660744 tig0027216:+15885 Msa1432960:CDS
ATATCGAAGACAATTAGCAA+GGG 0.660966 tig0027216:+16168 Msa1432960:CDS
GTAAAATTATCATGGTGGTG+TGG 0.668940 tig0027216:+16416 Msa1432960:exon
AGGATCTGATGAGAAAGAGG+TGG 0.687344 tig0027216:-15005 None:intergenic
AGGATTGACTATGCCCCAGG+TGG 0.697092 tig0027216:+16048 Msa1432960:CDS
AAGCACAAACACGACCTCGG+TGG 0.701480 tig0027216:-16100 None:intergenic
ATTGTCTGGAACAGAAGGTG+TGG 0.719167 tig0027216:-16322 None:intergenic
TTGACCAAGACATTCCAGGT+GGG 0.732755 tig0027216:+16348 Msa1432960:CDS
GTTGACCAAGACATTCCAGG+TGG 0.742504 tig0027216:+16347 Msa1432960:CDS
AGGCAAGGTCAGCAACACAG+AGG 0.751663 tig0027216:-15042 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAAATTTAAAAAACAG+GGG - tig0027216:15217-15236 None:intergenic 10.0%
!! CAAAAAAAAAATTAAAGAAA+AGG - tig0027216:15269-15288 None:intergenic 10.0%
!! ATATAAAATTTAAAAAACAG+GGG - tig0027216:15217-15236 None:intergenic 10.0%
!! CAAAAAAAAAATTAAAGAAA+AGG - tig0027216:15269-15288 None:intergenic 10.0%
!!! AGTAAATAAGTTGATAAATA+TGG - tig0027216:14857-14876 None:intergenic 15.0%
!! TATAAAATTTAAAAAACAGG+GGG - tig0027216:15216-15235 None:intergenic 15.0%
!!! AGTAAATAAGTTGATAAATA+TGG - tig0027216:14857-14876 None:intergenic 15.0%
!! TATAAAATTTAAAAAACAGG+GGG - tig0027216:15216-15235 None:intergenic 15.0%
!! ATAGTTATAGTCTATATGAA+TGG - tig0027216:15105-15124 None:intergenic 20.0%
!! TTCATATAGACTATAACTAT+AGG + tig0027216:15105-15124 Msa1432960:intron 20.0%
!!! CCATGATAATTTTACTTTTT+GGG - tig0027216:16411-16430 None:intergenic 20.0%
!!! ACCATGATAATTTTACTTTT+TGG - tig0027216:16412-16431 None:intergenic 20.0%
!! AAAAAGTAAAATTATCATGG+TGG + tig0027216:16411-16430 Msa1432960:exon 20.0%
!!! AATCATTTTATCATGTGTTT+CGG - tig0027216:16710-16729 None:intergenic 20.0%
!! ATAGTTATAGTCTATATGAA+TGG - tig0027216:15105-15124 None:intergenic 20.0%
!! TTCATATAGACTATAACTAT+AGG + tig0027216:15105-15124 Msa1432960:intron 20.0%
!!! CCATGATAATTTTACTTTTT+GGG - tig0027216:16411-16430 None:intergenic 20.0%
!!! ACCATGATAATTTTACTTTT+TGG - tig0027216:16412-16431 None:intergenic 20.0%
!! AAAAAGTAAAATTATCATGG+TGG + tig0027216:16411-16430 Msa1432960:exon 20.0%
!!! AATCATTTTATCATGTGTTT+CGG - tig0027216:16710-16729 None:intergenic 20.0%
!!! ATAAGTTGATAAATATGGAG+AGG - tig0027216:14852-14871 None:intergenic 25.0%
! AACTGAAAATAAGTAAGCTA+GGG - tig0027216:14908-14927 None:intergenic 25.0%
! AAACTGAAAATAAGTAAGCT+AGG - tig0027216:14909-14928 None:intergenic 25.0%
! ATAACTATAGGTGTAACTAT+AGG + tig0027216:15117-15136 Msa1432960:intron 25.0%
! GAGGTTAAGAAAACTAATAA+AGG - tig0027216:15299-15318 None:intergenic 25.0%
! AAAGCAAAATTAAAGCAGTT+TGG - tig0027216:15329-15348 None:intergenic 25.0%
! CTTAATCATGTTATGTTAGT+GGG - tig0027216:15396-15415 None:intergenic 25.0%
! ACTTAATCATGTTATGTTAG+TGG - tig0027216:15397-15416 None:intergenic 25.0%
! TCTTACTTACATTAGAGATT+TGG + tig0027216:15470-15489 Msa1432960:intron 25.0%
! AATCCTCATCAAGAATTTAA+TGG + tig0027216:15682-15701 Msa1432960:intron 25.0%
! TCTGAAAGATGATTAATTCT+TGG + tig0027216:15830-15849 Msa1432960:intron 25.0%
! AAAGATGATTAATTCTTGGA+GGG + tig0027216:15834-15853 Msa1432960:intron 25.0%
! CCCAAAAAGTAAAATTATCA+TGG + tig0027216:16408-16427 Msa1432960:exon 25.0%
! AAAAAATGGAACACTCATAA+AGG + tig0027216:16482-16501 Msa1432960:three_prime_UTR 25.0%
!!! AAAAGTAGCATTTTTCTAGT+TGG - tig0027216:16660-16679 None:intergenic 25.0%
!! ATATCGTGATTATAGTTTTC+AGG - tig0027216:16683-16702 None:intergenic 25.0%
!! ATCATTTTATCATGTGTTTC+GGG - tig0027216:16709-16728 None:intergenic 25.0%
!!! ATAAGTTGATAAATATGGAG+AGG - tig0027216:14852-14871 None:intergenic 25.0%
! AACTGAAAATAAGTAAGCTA+GGG - tig0027216:14908-14927 None:intergenic 25.0%
! AAACTGAAAATAAGTAAGCT+AGG - tig0027216:14909-14928 None:intergenic 25.0%
! ATAACTATAGGTGTAACTAT+AGG + tig0027216:15117-15136 Msa1432960:intron 25.0%
! GAGGTTAAGAAAACTAATAA+AGG - tig0027216:15299-15318 None:intergenic 25.0%
! AAAGCAAAATTAAAGCAGTT+TGG - tig0027216:15329-15348 None:intergenic 25.0%
! CTTAATCATGTTATGTTAGT+GGG - tig0027216:15396-15415 None:intergenic 25.0%
! ACTTAATCATGTTATGTTAG+TGG - tig0027216:15397-15416 None:intergenic 25.0%
! TCTTACTTACATTAGAGATT+TGG + tig0027216:15470-15489 Msa1432960:intron 25.0%
! AATCCTCATCAAGAATTTAA+TGG + tig0027216:15682-15701 Msa1432960:intron 25.0%
! TCTGAAAGATGATTAATTCT+TGG + tig0027216:15830-15849 Msa1432960:intron 25.0%
! AAAGATGATTAATTCTTGGA+GGG + tig0027216:15834-15853 Msa1432960:intron 25.0%
! CCCAAAAAGTAAAATTATCA+TGG + tig0027216:16408-16427 Msa1432960:exon 25.0%
! AAAAAATGGAACACTCATAA+AGG + tig0027216:16482-16501 Msa1432960:three_prime_UTR 25.0%
!!! AAAAGTAGCATTTTTCTAGT+TGG - tig0027216:16660-16679 None:intergenic 25.0%
!! ATATCGTGATTATAGTTTTC+AGG - tig0027216:16683-16702 None:intergenic 25.0%
!! ATCATTTTATCATGTGTTTC+GGG - tig0027216:16709-16728 None:intergenic 25.0%
!! AAGAAACAAATGAGTTGGTT+GGG - tig0027216:14819-14838 None:intergenic 30.0%
!! AAAGAAACAAATGAGTTGGT+TGG - tig0027216:14820-14839 None:intergenic 30.0%
GAAGAAAGAAACAAATGAGT+TGG - tig0027216:14824-14843 None:intergenic 30.0%
! TTCAACATTCCTTGTTTCTT+GGG + tig0027216:14963-14982 Msa1432960:CDS 30.0%
GAGAGTAGAGTGATATAAAA+GGG - tig0027216:15078-15097 None:intergenic 30.0%
AGAGAGTAGAGTGATATAAA+AGG - tig0027216:15079-15098 None:intergenic 30.0%
AAAATTTAAAAAACAGGGGG+CGG - tig0027216:15213-15232 None:intergenic 30.0%
CAAAATTAAAGCAGTTTGGT+AGG - tig0027216:15325-15344 None:intergenic 30.0%
! GATTTGGATTTTCAGCAATT+TGG + tig0027216:15486-15505 Msa1432960:intron 30.0%
!! GTTAGTTATCCGATTTTGAT+TGG - tig0027216:15550-15569 None:intergenic 30.0%
!!! TGTCCAATTTTGATTAGACT+TGG + tig0027216:15616-15635 Msa1432960:intron 30.0%
AGACCATTAAATTCTTGATG+AGG - tig0027216:15688-15707 None:intergenic 30.0%
GAAAGATGATTAATTCTTGG+AGG + tig0027216:15833-15852 Msa1432960:intron 30.0%
AAAACAGGTGTAAAAGTGAA+CGG + tig0027216:15868-15887 Msa1432960:intron 30.0%
ATATCGAAGACAATTAGCAA+GGG + tig0027216:16168-16187 Msa1432960:CDS 30.0%
ATCTGTCTCTTTGCAAAAAA+TGG + tig0027216:16468-16487 Msa1432960:three_prime_UTR 30.0%
!!! CTTATATTTTTTGACTGCGA+CGG + tig0027216:16602-16621 Msa1432960:three_prime_UTR 30.0%
!! AAGAAACAAATGAGTTGGTT+GGG - tig0027216:14819-14838 None:intergenic 30.0%
!! AAAGAAACAAATGAGTTGGT+TGG - tig0027216:14820-14839 None:intergenic 30.0%
GAAGAAAGAAACAAATGAGT+TGG - tig0027216:14824-14843 None:intergenic 30.0%
! TTCAACATTCCTTGTTTCTT+GGG + tig0027216:14963-14982 Msa1432960:CDS 30.0%
GAGAGTAGAGTGATATAAAA+GGG - tig0027216:15078-15097 None:intergenic 30.0%
AGAGAGTAGAGTGATATAAA+AGG - tig0027216:15079-15098 None:intergenic 30.0%
AAAATTTAAAAAACAGGGGG+CGG - tig0027216:15213-15232 None:intergenic 30.0%
CAAAATTAAAGCAGTTTGGT+AGG - tig0027216:15325-15344 None:intergenic 30.0%
! GATTTGGATTTTCAGCAATT+TGG + tig0027216:15486-15505 Msa1432960:intron 30.0%
!! GTTAGTTATCCGATTTTGAT+TGG - tig0027216:15550-15569 None:intergenic 30.0%
!!! TGTCCAATTTTGATTAGACT+TGG + tig0027216:15616-15635 Msa1432960:intron 30.0%
AGACCATTAAATTCTTGATG+AGG - tig0027216:15688-15707 None:intergenic 30.0%
GAAAGATGATTAATTCTTGG+AGG + tig0027216:15833-15852 Msa1432960:intron 30.0%
AAAACAGGTGTAAAAGTGAA+CGG + tig0027216:15868-15887 Msa1432960:intron 30.0%
ATATCGAAGACAATTAGCAA+GGG + tig0027216:16168-16187 Msa1432960:CDS 30.0%
ATCTGTCTCTTTGCAAAAAA+TGG + tig0027216:16468-16487 Msa1432960:three_prime_UTR 30.0%
!!! CTTATATTTTTTGACTGCGA+CGG + tig0027216:16602-16621 Msa1432960:three_prime_UTR 30.0%
GAAAATAAGTAAGCTAGGGT+TGG - tig0027216:14904-14923 None:intergenic 35.0%
ATGTTGAAGCTTCATGGTTT+GGG - tig0027216:14951-14970 None:intergenic 35.0%
AATGTTGAAGCTTCATGGTT+TGG - tig0027216:14952-14971 None:intergenic 35.0%
! CTTCAACATTCCTTGTTTCT+TGG + tig0027216:14962-14981 Msa1432960:CDS 35.0%
GTAGAGTGATATAAAAGGGT+AGG - tig0027216:15074-15093 None:intergenic 35.0%
! TTTTCCAGCTTATATGCATG+AGG - tig0027216:15173-15192 None:intergenic 35.0%
AAATTTAAAAAACAGGGGGC+GGG - tig0027216:15212-15231 None:intergenic 35.0%
CATGATTAAACAGTTGAGTC+AGG - tig0027216:15354-15373 None:intergenic 35.0%
ATTATCCATCATTCAGCTAG+TGG - tig0027216:15451-15470 None:intergenic 35.0%
!!! TCCGATTTTGATTGGAAGTT+CGG - tig0027216:15542-15561 None:intergenic 35.0%
CACCATCAAAGTTAAATGCA+CGG + tig0027216:15580-15599 Msa1432960:intron 35.0%
! AACCGTGCATTTAACTTTGA+TGG - tig0027216:15585-15604 None:intergenic 35.0%
TCGCCAAGTCTAATCAAAAT+TGG - tig0027216:15622-15641 None:intergenic 35.0%
AGGGCTGGAATATATAAAAC+AGG + tig0027216:15853-15872 Msa1432960:intron 35.0%
CATATCGAAGACAATTAGCA+AGG + tig0027216:16167-16186 Msa1432960:CDS 35.0%
!! GTTCTTTTGGAAGTGAACTA+AGG - tig0027216:16217-16236 None:intergenic 35.0%
! GTACATTGGCATTGTTCTTT+TGG - tig0027216:16230-16249 None:intergenic 35.0%
! CTTGATTTTCTCAACCTCTT+TGG - tig0027216:16376-16395 None:intergenic 35.0%
AGGTTGAGAAAATCAAGTCT+AGG + tig0027216:16379-16398 Msa1432960:CDS 35.0%
! GTAAAATTATCATGGTGGTG+TGG + tig0027216:16416-16435 Msa1432960:exon 35.0%
AAGGAAAAAGTAAGAGCAAG+TGG + tig0027216:16501-16520 Msa1432960:three_prime_UTR 35.0%
CGTCGCAGTCAAAAAATATA+AGG - tig0027216:16604-16623 None:intergenic 35.0%
GAAAATAAGTAAGCTAGGGT+TGG - tig0027216:14904-14923 None:intergenic 35.0%
ATGTTGAAGCTTCATGGTTT+GGG - tig0027216:14951-14970 None:intergenic 35.0%
AATGTTGAAGCTTCATGGTT+TGG - tig0027216:14952-14971 None:intergenic 35.0%
! CTTCAACATTCCTTGTTTCT+TGG + tig0027216:14962-14981 Msa1432960:CDS 35.0%
GTAGAGTGATATAAAAGGGT+AGG - tig0027216:15074-15093 None:intergenic 35.0%
! TTTTCCAGCTTATATGCATG+AGG - tig0027216:15173-15192 None:intergenic 35.0%
AAATTTAAAAAACAGGGGGC+GGG - tig0027216:15212-15231 None:intergenic 35.0%
CATGATTAAACAGTTGAGTC+AGG - tig0027216:15354-15373 None:intergenic 35.0%
ATTATCCATCATTCAGCTAG+TGG - tig0027216:15451-15470 None:intergenic 35.0%
!!! TCCGATTTTGATTGGAAGTT+CGG - tig0027216:15542-15561 None:intergenic 35.0%
CACCATCAAAGTTAAATGCA+CGG + tig0027216:15580-15599 Msa1432960:intron 35.0%
! AACCGTGCATTTAACTTTGA+TGG - tig0027216:15585-15604 None:intergenic 35.0%
TCGCCAAGTCTAATCAAAAT+TGG - tig0027216:15622-15641 None:intergenic 35.0%
AGGGCTGGAATATATAAAAC+AGG + tig0027216:15853-15872 Msa1432960:intron 35.0%
CATATCGAAGACAATTAGCA+AGG + tig0027216:16167-16186 Msa1432960:CDS 35.0%
!! GTTCTTTTGGAAGTGAACTA+AGG - tig0027216:16217-16236 None:intergenic 35.0%
! GTACATTGGCATTGTTCTTT+TGG - tig0027216:16230-16249 None:intergenic 35.0%
! CTTGATTTTCTCAACCTCTT+TGG - tig0027216:16376-16395 None:intergenic 35.0%
AGGTTGAGAAAATCAAGTCT+AGG + tig0027216:16379-16398 Msa1432960:CDS 35.0%
! GTAAAATTATCATGGTGGTG+TGG + tig0027216:16416-16435 Msa1432960:exon 35.0%
AAGGAAAAAGTAAGAGCAAG+TGG + tig0027216:16501-16520 Msa1432960:three_prime_UTR 35.0%
CGTCGCAGTCAAAAAATATA+AGG - tig0027216:16604-16623 None:intergenic 35.0%
CTCTTCCATACCATTTCTGT+TGG + tig0027216:14877-14896 Msa1432960:five_prime_UTR 40.0%
TTGGACCAACAGAAATGGTA+TGG - tig0027216:14885-14904 None:intergenic 40.0%
CAAGGAATGTTGAAGCTTCA+TGG - tig0027216:14957-14976 None:intergenic 40.0%
! TTCCTTGTTTCTTGGGACTT+TGG + tig0027216:14970-14989 Msa1432960:CDS 40.0%
TATAAAAGGGTAGGTACCTG+AGG - tig0027216:15065-15084 None:intergenic 40.0%
CTTTCCTCATGCATATAAGC+TGG + tig0027216:15166-15185 Msa1432960:intron 40.0%
! CTAGTGGTGCTAAGAAATGT+GGG - tig0027216:15435-15454 None:intergenic 40.0%
GCCGAACTTCCAATCAAAAT+CGG + tig0027216:15538-15557 Msa1432960:intron 40.0%
ATGATTAATTCTTGGAGGGC+TGG + tig0027216:15838-15857 Msa1432960:intron 40.0%
!! GAAATCAGAGGCATTTACCT+TGG - tig0027216:15914-15933 None:intergenic 40.0%
TATGTTGGAGGAGAAATCAG+AGG - tig0027216:15926-15945 None:intergenic 40.0%
TTGAAGGGCAACTAGATGTT+GGG + tig0027216:16121-16140 Msa1432960:CDS 40.0%
TGTCTTCGATATGAGCACAT+TGG - tig0027216:16160-16179 None:intergenic 40.0%
! GGAAGTGAACTAAGGCTTTT+GGG - tig0027216:16209-16228 None:intergenic 40.0%
! TGGAAGTGAACTAAGGCTTT+TGG - tig0027216:16210-16229 None:intergenic 40.0%
TGCAAACAAGGTAGTAGCAA+TGG - tig0027216:16301-16320 None:intergenic 40.0%
! AACACATTGTCTGGAACAGA+AGG - tig0027216:16330-16349 None:intergenic 40.0%
AGGCAAGAGAATTGTCATGA+TGG - tig0027216:16584-16603 None:intergenic 40.0%
!!! ATTTTTTGACTGCGACGGAA+TGG + tig0027216:16607-16626 Msa1432960:three_prime_UTR 40.0%
CTCTTCCATACCATTTCTGT+TGG + tig0027216:14877-14896 Msa1432960:five_prime_UTR 40.0%
TTGGACCAACAGAAATGGTA+TGG - tig0027216:14885-14904 None:intergenic 40.0%
CAAGGAATGTTGAAGCTTCA+TGG - tig0027216:14957-14976 None:intergenic 40.0%
! TTCCTTGTTTCTTGGGACTT+TGG + tig0027216:14970-14989 Msa1432960:CDS 40.0%
TATAAAAGGGTAGGTACCTG+AGG - tig0027216:15065-15084 None:intergenic 40.0%
CTTTCCTCATGCATATAAGC+TGG + tig0027216:15166-15185 Msa1432960:intron 40.0%
! CTAGTGGTGCTAAGAAATGT+GGG - tig0027216:15435-15454 None:intergenic 40.0%
GCCGAACTTCCAATCAAAAT+CGG + tig0027216:15538-15557 Msa1432960:intron 40.0%
ATGATTAATTCTTGGAGGGC+TGG + tig0027216:15838-15857 Msa1432960:intron 40.0%
!! GAAATCAGAGGCATTTACCT+TGG - tig0027216:15914-15933 None:intergenic 40.0%
TATGTTGGAGGAGAAATCAG+AGG - tig0027216:15926-15945 None:intergenic 40.0%
TTGAAGGGCAACTAGATGTT+GGG + tig0027216:16121-16140 Msa1432960:CDS 40.0%
TGTCTTCGATATGAGCACAT+TGG - tig0027216:16160-16179 None:intergenic 40.0%
! GGAAGTGAACTAAGGCTTTT+GGG - tig0027216:16209-16228 None:intergenic 40.0%
! TGGAAGTGAACTAAGGCTTT+TGG - tig0027216:16210-16229 None:intergenic 40.0%
TGCAAACAAGGTAGTAGCAA+TGG - tig0027216:16301-16320 None:intergenic 40.0%
! AACACATTGTCTGGAACAGA+AGG - tig0027216:16330-16349 None:intergenic 40.0%
AGGCAAGAGAATTGTCATGA+TGG - tig0027216:16584-16603 None:intergenic 40.0%
!!! ATTTTTTGACTGCGACGGAA+TGG + tig0027216:16607-16626 Msa1432960:three_prime_UTR 40.0%
TAGGGTTGGACCAACAGAAA+TGG - tig0027216:14890-14909 None:intergenic 45.0%
AGCCAAAGTCCCAAGAAACA+AGG - tig0027216:14975-14994 None:intergenic 45.0%
AGGATCTGATGAGAAAGAGG+TGG - tig0027216:15008-15027 None:intergenic 45.0%
GTCAGGATCTGATGAGAAAG+AGG - tig0027216:15011-15030 None:intergenic 45.0%
CAGAGGTCTTGAAGATAGTC+AGG - tig0027216:15028-15047 None:intergenic 45.0%
AAAGCAGTTTGGTAGGAGTG+AGG - tig0027216:15318-15337 None:intergenic 45.0%
GGTGCTAAGAAATGTGGGTA+AGG - tig0027216:15430-15449 None:intergenic 45.0%
! GCTAGTGGTGCTAAGAAATG+TGG - tig0027216:15436-15455 None:intergenic 45.0%
TAGCACCACTAGCTGAATGA+TGG + tig0027216:15443-15462 Msa1432960:intron 45.0%
CCATATCTCTACTCTCAAGG+TGG - tig0027216:15726-15745 None:intergenic 45.0%
CCACCTTGAGAGTAGAGATA+TGG + tig0027216:15723-15742 Msa1432960:intron 45.0%
GAGCCATATCTCTACTCTCA+AGG - tig0027216:15729-15748 None:intergenic 45.0%
!! CAAAGCTGACTTGTGAGTTG+AGG - tig0027216:15779-15798 None:intergenic 45.0%
! GAACGGATTCACTTGCAAAG+AGG + tig0027216:15885-15904 Msa1432960:CDS 45.0%
! TGGTTTGGCTAGTATGTTGG+AGG - tig0027216:15938-15957 None:intergenic 45.0%
TCCAACATACTAGCCAAACC+AGG + tig0027216:15937-15956 Msa1432960:CDS 45.0%
!! TCCTGGTTTGGCTAGTATGT+TGG - tig0027216:15941-15960 None:intergenic 45.0%
! AATGTGTTGTTGGTGCTTCC+TGG - tig0027216:15958-15977 None:intergenic 45.0%
!! GGAAGCACCAACAACACATT+TGG + tig0027216:15958-15977 Msa1432960:CDS 45.0%
CACTGAGCCAAATGTGTTGT+TGG - tig0027216:15968-15987 None:intergenic 45.0%
! CAACAACACATTTGGCTCAG+TGG + tig0027216:15966-15985 Msa1432960:CDS 45.0%
TCCTGGAACTTTCTGAACGT+TGG - tig0027216:16001-16020 None:intergenic 45.0%
TTCAAGCACAAACACGACCT+CGG - tig0027216:16106-16125 None:intergenic 45.0%
AGGTCGTGTTTGTGCTTGAA+GGG + tig0027216:16106-16125 Msa1432960:CDS 45.0%
CTTGAAGGGCAACTAGATGT+TGG + tig0027216:16120-16139 Msa1432960:CDS 45.0%
AAGAACAGCAGCAGGTACAT+TGG - tig0027216:16244-16263 None:intergenic 45.0%
AATGCAGAAAGAACAGCAGC+AGG - tig0027216:16252-16271 None:intergenic 45.0%
! ATTGTCTGGAACAGAAGGTG+TGG - tig0027216:16325-16344 None:intergenic 45.0%
GTCTTGGTCAACACATTGTC+TGG - tig0027216:16339-16358 None:intergenic 45.0%
! TGTGTTGACCAAGACATTCC+AGG + tig0027216:16344-16363 Msa1432960:CDS 45.0%
TTGACCAAGACATTCCAGGT+GGG + tig0027216:16348-16367 Msa1432960:CDS 45.0%
TAGGGTTGGACCAACAGAAA+TGG - tig0027216:14890-14909 None:intergenic 45.0%
AGCCAAAGTCCCAAGAAACA+AGG - tig0027216:14975-14994 None:intergenic 45.0%
AGGATCTGATGAGAAAGAGG+TGG - tig0027216:15008-15027 None:intergenic 45.0%
GTCAGGATCTGATGAGAAAG+AGG - tig0027216:15011-15030 None:intergenic 45.0%
CAGAGGTCTTGAAGATAGTC+AGG - tig0027216:15028-15047 None:intergenic 45.0%
AAAGCAGTTTGGTAGGAGTG+AGG - tig0027216:15318-15337 None:intergenic 45.0%
GGTGCTAAGAAATGTGGGTA+AGG - tig0027216:15430-15449 None:intergenic 45.0%
! GCTAGTGGTGCTAAGAAATG+TGG - tig0027216:15436-15455 None:intergenic 45.0%
TAGCACCACTAGCTGAATGA+TGG + tig0027216:15443-15462 Msa1432960:intron 45.0%
CCATATCTCTACTCTCAAGG+TGG - tig0027216:15726-15745 None:intergenic 45.0%
CCACCTTGAGAGTAGAGATA+TGG + tig0027216:15723-15742 Msa1432960:intron 45.0%
GAGCCATATCTCTACTCTCA+AGG - tig0027216:15729-15748 None:intergenic 45.0%
!! CAAAGCTGACTTGTGAGTTG+AGG - tig0027216:15779-15798 None:intergenic 45.0%
! GAACGGATTCACTTGCAAAG+AGG + tig0027216:15885-15904 Msa1432960:CDS 45.0%
! TGGTTTGGCTAGTATGTTGG+AGG - tig0027216:15938-15957 None:intergenic 45.0%
TCCAACATACTAGCCAAACC+AGG + tig0027216:15937-15956 Msa1432960:CDS 45.0%
!! TCCTGGTTTGGCTAGTATGT+TGG - tig0027216:15941-15960 None:intergenic 45.0%
! AATGTGTTGTTGGTGCTTCC+TGG - tig0027216:15958-15977 None:intergenic 45.0%
!! GGAAGCACCAACAACACATT+TGG + tig0027216:15958-15977 Msa1432960:CDS 45.0%
CACTGAGCCAAATGTGTTGT+TGG - tig0027216:15968-15987 None:intergenic 45.0%
! CAACAACACATTTGGCTCAG+TGG + tig0027216:15966-15985 Msa1432960:CDS 45.0%
TCCTGGAACTTTCTGAACGT+TGG - tig0027216:16001-16020 None:intergenic 45.0%
TTCAAGCACAAACACGACCT+CGG - tig0027216:16106-16125 None:intergenic 45.0%
AGGTCGTGTTTGTGCTTGAA+GGG + tig0027216:16106-16125 Msa1432960:CDS 45.0%
CTTGAAGGGCAACTAGATGT+TGG + tig0027216:16120-16139 Msa1432960:CDS 45.0%
AAGAACAGCAGCAGGTACAT+TGG - tig0027216:16244-16263 None:intergenic 45.0%
AATGCAGAAAGAACAGCAGC+AGG - tig0027216:16252-16271 None:intergenic 45.0%
! ATTGTCTGGAACAGAAGGTG+TGG - tig0027216:16325-16344 None:intergenic 45.0%
GTCTTGGTCAACACATTGTC+TGG - tig0027216:16339-16358 None:intergenic 45.0%
! TGTGTTGACCAAGACATTCC+AGG + tig0027216:16344-16363 Msa1432960:CDS 45.0%
TTGACCAAGACATTCCAGGT+GGG + tig0027216:16348-16367 Msa1432960:CDS 45.0%
!! TATATAAAATTTAAAAAACA+GGG - tig0027216:15218-15237 None:intergenic 5.0%
!! ATATATAAAATTTAAAAAAC+AGG - tig0027216:15219-15238 None:intergenic 5.0%
!! TATATAAAATTTAAAAAACA+GGG - tig0027216:15218-15237 None:intergenic 5.0%
!! ATATATAAAATTTAAAAAAC+AGG - tig0027216:15219-15238 None:intergenic 5.0%
AAACAGGGGGCGGGAATAAT+GGG - tig0027216:15203-15222 None:intergenic 50.0%
AAAACAGGGGGCGGGAATAA+TGG - tig0027216:15204-15223 None:intergenic 50.0%
TCTCTACTCTCAAGGTGGCA+TGG - tig0027216:15721-15740 None:intergenic 50.0%
!! CACTTGCAAAGAGGCATCCA+AGG + tig0027216:15894-15913 Msa1432960:CDS 50.0%
! GTTGTTGGTGCTTCCTGGTT+TGG - tig0027216:15953-15972 None:intergenic 50.0%
! ACATTTGGCTCAGTGGTGAC+TGG + tig0027216:15973-15992 Msa1432960:CDS 50.0%
GCCAACGTTCAGAAAGTTCC+AGG + tig0027216:15997-16016 Msa1432960:CDS 50.0%
GTTCCAGGACTCAACACTCT+TGG + tig0027216:16012-16031 Msa1432960:CDS 50.0%
!! ACACCAAGAGTGTTGAGTCC+TGG - tig0027216:16018-16037 None:intergenic 50.0%
! CTCTTGGTGTGTCTCTGTCA+AGG + tig0027216:16028-16047 Msa1432960:CDS 50.0%
TCAAGGATTGACTATGCCCC+AGG + tig0027216:16045-16064 Msa1432960:CDS 50.0%
GAGGTCGTGTTTGTGCTTGA+AGG + tig0027216:16105-16124 Msa1432960:CDS 50.0%
! CGATATGAGCACATTGGCTG+TGG - tig0027216:16154-16173 None:intergenic 50.0%
GCATTCAACAGCCAACTTCC+TGG + tig0027216:16267-16286 Msa1432960:CDS 50.0%
TGGACTGTGTACCAGGAAGT+TGG - tig0027216:16281-16300 None:intergenic 50.0%
!! GTAGCAATGGACTGTGTACC+AGG - tig0027216:16288-16307 None:intergenic 50.0%
! AGAAGGTGTGGCTGCAAACA+AGG - tig0027216:16313-16332 None:intergenic 50.0%
GTTGACCAAGACATTCCAGG+TGG + tig0027216:16347-16366 Msa1432960:CDS 50.0%
ATTCCAGGTGGGTACCAAAG+AGG + tig0027216:16359-16378 Msa1432960:CDS 50.0%
AAACAGGGGGCGGGAATAAT+GGG - tig0027216:15203-15222 None:intergenic 50.0%
AAAACAGGGGGCGGGAATAA+TGG - tig0027216:15204-15223 None:intergenic 50.0%
TCTCTACTCTCAAGGTGGCA+TGG - tig0027216:15721-15740 None:intergenic 50.0%
!! CACTTGCAAAGAGGCATCCA+AGG + tig0027216:15894-15913 Msa1432960:CDS 50.0%
! GTTGTTGGTGCTTCCTGGTT+TGG - tig0027216:15953-15972 None:intergenic 50.0%
! ACATTTGGCTCAGTGGTGAC+TGG + tig0027216:15973-15992 Msa1432960:CDS 50.0%
GCCAACGTTCAGAAAGTTCC+AGG + tig0027216:15997-16016 Msa1432960:CDS 50.0%
GTTCCAGGACTCAACACTCT+TGG + tig0027216:16012-16031 Msa1432960:CDS 50.0%
!! ACACCAAGAGTGTTGAGTCC+TGG - tig0027216:16018-16037 None:intergenic 50.0%
! CTCTTGGTGTGTCTCTGTCA+AGG + tig0027216:16028-16047 Msa1432960:CDS 50.0%
TCAAGGATTGACTATGCCCC+AGG + tig0027216:16045-16064 Msa1432960:CDS 50.0%
GAGGTCGTGTTTGTGCTTGA+AGG + tig0027216:16105-16124 Msa1432960:CDS 50.0%
! CGATATGAGCACATTGGCTG+TGG - tig0027216:16154-16173 None:intergenic 50.0%
GCATTCAACAGCCAACTTCC+TGG + tig0027216:16267-16286 Msa1432960:CDS 50.0%
TGGACTGTGTACCAGGAAGT+TGG - tig0027216:16281-16300 None:intergenic 50.0%
!! GTAGCAATGGACTGTGTACC+AGG - tig0027216:16288-16307 None:intergenic 50.0%
! AGAAGGTGTGGCTGCAAACA+AGG - tig0027216:16313-16332 None:intergenic 50.0%
GTTGACCAAGACATTCCAGG+TGG + tig0027216:16347-16366 Msa1432960:CDS 50.0%
ATTCCAGGTGGGTACCAAAG+AGG + tig0027216:16359-16378 Msa1432960:CDS 50.0%
AGGCAAGGTCAGCAACACAG+AGG - tig0027216:15045-15064 None:intergenic 55.0%
! TGTGTTGCTGACCTTGCCTC+AGG + tig0027216:15046-15065 Msa1432960:CDS 55.0%
AAGGGTAGGTACCTGAGGCA+AGG - tig0027216:15060-15079 None:intergenic 55.0%
AACAGGGGGCGGGAATAATG+GGG - tig0027216:15202-15221 None:intergenic 55.0%
CTACTCTCAAGGTGGCATGG+AGG - tig0027216:15718-15737 None:intergenic 55.0%
AGGATTGACTATGCCCCAGG+TGG + tig0027216:16048-16067 Msa1432960:CDS 55.0%
AAGCACAAACACGACCTCGG+TGG - tig0027216:16103-16122 None:intergenic 55.0%
GGTACCCACCTGGAATGTCT+TGG - tig0027216:16355-16374 None:intergenic 55.0%
CAACCTCTTTGGTACCCACC+TGG - tig0027216:16365-16384 None:intergenic 55.0%
AGGCAAGGTCAGCAACACAG+AGG - tig0027216:15045-15064 None:intergenic 55.0%
! TGTGTTGCTGACCTTGCCTC+AGG + tig0027216:15046-15065 Msa1432960:CDS 55.0%
AAGGGTAGGTACCTGAGGCA+AGG - tig0027216:15060-15079 None:intergenic 55.0%
AACAGGGGGCGGGAATAATG+GGG - tig0027216:15202-15221 None:intergenic 55.0%
CTACTCTCAAGGTGGCATGG+AGG - tig0027216:15718-15737 None:intergenic 55.0%
AGGATTGACTATGCCCCAGG+TGG + tig0027216:16048-16067 Msa1432960:CDS 55.0%
AAGCACAAACACGACCTCGG+TGG - tig0027216:16103-16122 None:intergenic 55.0%
GGTACCCACCTGGAATGTCT+TGG - tig0027216:16355-16374 None:intergenic 55.0%
CAACCTCTTTGGTACCCACC+TGG - tig0027216:16365-16384 None:intergenic 55.0%
ACAGGGGGCGGGAATAATGG+GGG - tig0027216:15201-15220 None:intergenic 60.0%
!! GGTGAGTGTGAGGTGGGTTG+AGG - tig0027216:16074-16093 None:intergenic 60.0%
ACAGGGGGCGGGAATAATGG+GGG - tig0027216:15201-15220 None:intergenic 60.0%
!! GGTGAGTGTGAGGTGGGTTG+AGG - tig0027216:16074-16093 None:intergenic 60.0%
!! AGGTGGGTTGAGGCCACCTG+GGG - tig0027216:16064-16083 None:intergenic 65.0%
!! GAGGTGGGTTGAGGCCACCT+GGG - tig0027216:16065-16084 None:intergenic 65.0%
!! TGAGGTGGGTTGAGGCCACC+TGG - tig0027216:16066-16085 None:intergenic 65.0%
CGCGTGGGTGAGTGTGAGGT+GGG - tig0027216:16080-16099 None:intergenic 65.0%
!! AGGTGGGTTGAGGCCACCTG+GGG - tig0027216:16064-16083 None:intergenic 65.0%
!! GAGGTGGGTTGAGGCCACCT+GGG - tig0027216:16065-16084 None:intergenic 65.0%
!! TGAGGTGGGTTGAGGCCACC+TGG - tig0027216:16066-16085 None:intergenic 65.0%
CGCGTGGGTGAGTGTGAGGT+GGG - tig0027216:16080-16099 None:intergenic 65.0%
GCGCGTGGGTGAGTGTGAGG+TGG - tig0027216:16081-16100 None:intergenic 70.0%
GTGGCGCGTGGGTGAGTGTG+AGG - tig0027216:16084-16103 None:intergenic 70.0%
ACACGACCTCGGTGGCGCGT+GGG - tig0027216:16095-16114 None:intergenic 70.0%
AACACGACCTCGGTGGCGCG+TGG - tig0027216:16096-16115 None:intergenic 70.0%
GCGCGTGGGTGAGTGTGAGG+TGG - tig0027216:16081-16100 None:intergenic 70.0%
GTGGCGCGTGGGTGAGTGTG+AGG - tig0027216:16084-16103 None:intergenic 70.0%
ACACGACCTCGGTGGCGCGT+GGG - tig0027216:16095-16114 None:intergenic 70.0%
AACACGACCTCGGTGGCGCG+TGG - tig0027216:16096-16115 None:intergenic 70.0%
CACTCACCCACGCGCCACCG+AGG + tig0027216:16086-16105 Msa1432960:CDS 75.0%
CACTCACCCACGCGCCACCG+AGG + tig0027216:16086-16105 Msa1432960:CDS 75.0%
Chromosome Type Strat End Strand Name
tig0027216 gene 14816 16763 14816 ID=Msa1432960;Name=Msa1432960
tig0027216 mRNA 14816 16763 14816 ID=Msa1432960-mRNA-1;Parent=Msa1432960;Name=Msa1432960-mRNA-1;_AED=0.00;_eAED=0.00;_QI=140|1|1|1|1|1|2|344|218
tig0027216 exon 14816 15067 14816 ID=Msa1432960-mRNA-1:exon:8377;Parent=Msa1432960-mRNA-1
tig0027216 exon 15875 16763 15875 ID=Msa1432960-mRNA-1:exon:8378;Parent=Msa1432960-mRNA-1
tig0027216 five_prime_UTR 14816 14955 14816 ID=Msa1432960-mRNA-1:five_prime_utr;Parent=Msa1432960-mRNA-1
tig0027216 CDS 14956 15067 14956 ID=Msa1432960-mRNA-1:cds;Parent=Msa1432960-mRNA-1
tig0027216 CDS 15875 16419 15875 ID=Msa1432960-mRNA-1:cds;Parent=Msa1432960-mRNA-1
tig0027216 three_prime_UTR 16420 16763 16420 ID=Msa1432960-mRNA-1:three_prime_utr;Parent=Msa1432960-mRNA-1
Gene Sequence

>Msa1432960

ATGAAGCTTCAACATTCCTTGTTTCTTGGGACTTTGGCTCTGCTCTTAGCCACCTCTTTCTCATCAGATCCTGACTATCTTCAAGACCTCTGTGTTGCTGACCTTGCCTCAGGTGTAAAAGTGAACGGATTCACTTGCAAAGAGGCATCCAAGGTAAATGCCTCTGATTTCTCCTCCAACATACTAGCCAAACCAGGAAGCACCAACAACACATTTGGCTCAGTGGTGACTGGAGCCAACGTTCAGAAAGTTCCAGGACTCAACACTCTTGGTGTGTCTCTGTCAAGGATTGACTATGCCCCAGGTGGCCTCAACCCACCTCACACTCACCCACGCGCCACCGAGGTCGTGTTTGTGCTTGAAGGGCAACTAGATGTTGGGTTCATAACCACAGCCAATGTGCTCATATCGAAGACAATTAGCAAGGGTGAGATATTTGTGTTCCCAAAAGCCTTAGTTCACTTCCAAAAGAACAATGCCAATGTACCTGCTGCTGTTCTTTCTGCATTCAACAGCCAACTTCCTGGTACACAGTCCATTGCTACTACCTTGTTTGCAGCCACACCTTCTGTTCCAGACAATGTGTTGACCAAGACATTCCAGGTGGGTACCAAAGAGGTTGAGAAAATCAAGTCTAGGCTTGCACCCAAAAAGTAA
Protein sequence

>Msa1432960

MKLQHSLFLGTLALLLATSFSSDPDYLQDLCVADLASGVKVNGFTCKEASKVNASDFSSNILAKPGSTNNTFGSVVTGANVQKVPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEVVFVLEGQLDVGFITTANVLISKTISKGEIFVFPKALVHFQKNNANVPAAVLSAFNSQLPGTQSIATTLFAATPSVPDNVLTKTFQVGTKEVEKIKSRLAPKK*