AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0672690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0672690 MtrunA17_Chr4g0013301 85.037 401 19 3 1 398 1 363 0.0 636
Msa0672690 MtrunA17_Chr2g0308681 43.678 261 117 7 1 260 1 232 6.40e-55 183
Msa0672690 MtrunA17_Chr7g0258821 34.699 366 179 12 55 380 93 438 7.25e-48 171
Msa0672690 MtrunA17_Chr1g0175641 56.818 88 36 2 127 213 71 157 4.96e-29 112
Msa0672690 MtrunA17_Chr1g0175871 45.926 135 48 7 125 239 45 174 4.65e-28 110
Msa0672690 MtrunA17_Chr1g0175571 52.427 103 45 3 117 218 109 208 5.66e-28 111
Msa0672690 MtrunA17_Chr2g0324291 46.667 90 44 1 130 215 28 117 6.88e-25 100
Msa0672690 MtrunA17_Chr2g0324281 47.727 88 38 2 127 214 15 94 2.28e-23 97.4
Msa0672690 MtrunA17_Chr5g0403521 45.977 87 46 1 132 218 35 120 7.06e-23 97.4
Msa0672690 MtrunA17_Chr1g0154561 45.055 91 48 2 128 218 29 117 9.57e-23 96.7
Msa0672690 MtrunA17_Chr4g0021321 46.392 97 42 3 127 215 41 135 1.58e-21 93.6
Msa0672690 MtrunA17_Chr2g0324261 39.496 119 58 3 103 214 18 129 5.91e-21 92.0
Msa0672690 MtrunA17_Chr2g0282171 39.091 110 50 3 116 213 11 115 1.50e-20 90.5
Msa0672690 MtrunA17_Chr4g0047371 39.423 104 54 2 125 219 25 128 3.29e-20 88.6
Msa0672690 MtrunA17_Chr8g0360011 43.182 88 44 1 130 211 33 120 4.10e-20 89.7
Msa0672690 MtrunA17_Chr4g0047381 35.514 107 59 2 123 219 22 128 2.30e-19 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0672690 AT2G44410.1 43.462 260 104 8 1 245 10 241 8.40e-54 186
Msa0672690 AT3G58030.4 50.365 137 57 6 113 244 114 244 3.55e-35 136
Msa0672690 AT3G58030.2 50.365 137 57 6 113 244 114 244 3.55e-35 136
Msa0672690 AT3G58030.1 50.365 137 57 6 113 244 114 244 3.55e-35 136
Msa0672690 AT3G58030.3 50.365 137 57 6 113 244 114 244 3.55e-35 136
Msa0672690 AT1G74990.1 44.860 107 58 1 125 231 10 115 1.07e-28 110
Msa0672690 AT2G42030.1 38.272 162 88 3 93 250 100 253 1.31e-28 117
Msa0672690 AT1G19310.1 48.276 87 44 1 132 218 21 106 6.79e-24 100
Msa0672690 AT4G28270.1 46.000 100 34 3 128 214 15 107 1.08e-22 95.9
Msa0672690 AT2G23780.3 45.977 87 46 1 132 218 26 111 1.33e-22 96.7
Msa0672690 AT2G23780.2 45.977 87 46 1 132 218 26 111 1.33e-22 96.7
Msa0672690 AT2G23780.1 45.977 87 46 1 132 218 26 111 1.33e-22 96.7
Msa0672690 AT4G27470.1 35.200 125 64 3 132 243 42 162 5.93e-19 86.7
Msa0672690 AT4G03510.3 43.956 91 38 3 132 214 46 131 2.30e-18 85.1
Msa0672690 AT4G03510.1 43.956 91 38 3 132 214 46 131 2.30e-18 85.1
Msa0672690 AT4G03510.2 43.956 91 38 3 132 214 46 131 2.30e-18 85.1
Msa0672690 AT4G03510.4 43.956 91 38 3 132 214 46 131 2.30e-18 85.1

Find 121 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGGGTATTATTCCAATTTA+TGG 0.104536 4_4:-18000750 Msa0672690:CDS
CTTATTCTCATAAGCTCTTT+TGG 0.191630 4_4:-17998234 Msa0672690:three_prime_UTR
CCATTTCCATGTCCATAAAT+TGG 0.194274 4_4:+18000738 None:intergenic
TTATCAACATTCCTACTTAA+AGG 0.205288 4_4:+18000171 None:intergenic
CTCTCAGGTGTGGTACTATT+AGG 0.243365 4_4:+18000525 None:intergenic
GTCGATAATGTTGCTGTTAT+AGG 0.252556 4_4:-17998653 Msa0672690:CDS
TGTAAGGATATTTGCATGTT+TGG 0.275252 4_4:-17998354 Msa0672690:three_prime_UTR
CATAACCGAATTGGTGGATT+TGG 0.278139 4_4:-18000570 Msa0672690:CDS
CTTCTGTGTCTCTGTTAAAT+AGG 0.287511 4_4:-17998679 Msa0672690:CDS
TGACTGTTTGATATAACTTA+TGG 0.289048 4_4:-17998292 Msa0672690:three_prime_UTR
TCTCAGGTGTGGTACTATTA+GGG 0.289538 4_4:+18000526 None:intergenic
GTTGATAATGTTGCTGTTGC+AGG 0.300831 4_4:-18000156 Msa0672690:CDS
CTTCTATTGTCCAAAGTATT+CGG 0.320027 4_4:-18000599 Msa0672690:CDS
CTTTGATTGTAATATTTGTT+TGG 0.349272 4_4:-18000898 Msa0672690:CDS
TGATTTGAATCAGGAGCCTT+TGG 0.350787 4_4:-18001282 Msa0672690:CDS
TATGAAACCGCCGAATACTT+TGG 0.373232 4_4:+18000589 None:intergenic
TTCGAGAGCGAGGCAGCGTC+GGG 0.374026 4_4:-18001153 Msa0672690:CDS
ATTCAGATAACCAATGTTAC+AGG 0.375175 4_4:-18001107 Msa0672690:CDS
TTCTGCTGAAAGATTAGTTC+AGG 0.376998 4_4:-18000364 Msa0672690:CDS
CGGCGGTTTCATAACCGAAT+TGG 0.383576 4_4:-18000579 Msa0672690:CDS
CCAATTTATGGACATGGAAA+TGG 0.384021 4_4:-18000738 Msa0672690:CDS
ACATTCCTTTGCTTTCGAAT+AGG 0.388726 4_4:+18000800 None:intergenic
TATGGAGCTTGATTTGAATC+AGG 0.400185 4_4:-18001291 Msa0672690:CDS
CTCTCGAAGTAATTGCTTCA+AGG 0.402049 4_4:+18001168 None:intergenic
GGAGCGGAACGATGCTGATC+AGG 0.409682 4_4:-18001039 Msa0672690:CDS
GACCATTGATATATGATTCA+AGG 0.415979 4_4:+18000340 None:intergenic
TGAACATGGTGGTTCTCAAC+AGG 0.416867 4_4:-18000457 Msa0672690:CDS
AGCTGCTGCAGCTACAGAAT+TGG 0.416919 4_4:+18000203 None:intergenic
TGCAGTTTCTCCTGTAACAT+TGG 0.419434 4_4:+18001097 None:intergenic
CTTCTCTTTCTCCTTTAAGT+AGG 0.422331 4_4:-18000182 Msa0672690:CDS
CTTCTTCTACCGTTTGATGA+AGG 0.424965 4_4:+17998581 None:intergenic
GTGGTTCTCAACAGGTTTCA+AGG 0.428291 4_4:-18000449 Msa0672690:CDS
ATCTGAATCCGAGAGGAGTT+CGG 0.434023 4_4:+18001122 None:intergenic
GTTACCTCCCCTTTACAAAC+AGG 0.438464 4_4:+18000777 None:intergenic
TTGCTTCAAGGTGTGTGATT+CGG 0.441946 4_4:+18001180 None:intergenic
GTCTGCGTGCGAGACTGAAC+AGG 0.444476 4_4:+18000489 None:intergenic
GGGATGGAAGAGATTGATAA+TGG 0.448635 4_4:-18000948 Msa0672690:CDS
AGGAATGTCCTGTTTGTAAA+GGG 0.451056 4_4:-18000785 Msa0672690:CDS
AAATGAACGCACTGATGTAC+TGG 0.451580 4_4:+18001250 None:intergenic
AGTCATTTCGATATTCTTGT+TGG 0.454214 4_4:+17998527 None:intergenic
TGACCACAACATGTCAAAAC+AGG 0.454953 4_4:+18000861 None:intergenic
TATATCAATGGTCACAATAC+AGG 0.455204 4_4:-18000330 Msa0672690:CDS
TAGAAGAAGAAGATGCTCCT+TGG 0.455800 4_4:+18000616 None:intergenic
TAAAGGGGAGGTAACTGAAT+CGG 0.458742 4_4:-18000769 Msa0672690:CDS
GGCAAACCATTGTTTCTCTC+AGG 0.458959 4_4:+18000510 None:intergenic
TTCTTCTACCGTTTGATGAA+GGG 0.463767 4_4:+17998582 None:intergenic
CTCTCAACTCTAGGTGCCTT+AGG 0.467180 4_4:+18000660 None:intergenic
TATGTTGGAAGAACTTGAAT+CGG 0.467329 4_4:-18001222 Msa0672690:CDS
AGAAGAAGAAGATGCTCCTT+GGG 0.474601 4_4:+18000617 None:intergenic
GGTAAAGTGGAGGAGAGTAG+TGG 0.474653 4_4:-18000927 Msa0672690:CDS
CGGTTTCATAACCGAATTGG+TGG 0.476371 4_4:-18000576 Msa0672690:CDS
AATCTTATTCAATAGATGTA+AGG 0.478243 4_4:-17998370 Msa0672690:three_prime_UTR
GCTCTCCAAATCCACCAATT+CGG 0.478712 4_4:+18000565 None:intergenic
AACGATGCTGATCAGGATGA+AGG 0.485394 4_4:-18001032 Msa0672690:CDS
TCAAACGGTAGAAGAAGAAA+TGG 0.486110 4_4:-17998575 Msa0672690:CDS
GGTTGCCGCCGAACTCCTCT+CGG 0.492462 4_4:-18001130 Msa0672690:CDS
CTTGACCACGACTCTCTGAC+TGG 0.492720 4_4:+18000241 None:intergenic
AGAGATTGATAATGGTAAAG+TGG 0.493881 4_4:-18000940 Msa0672690:CDS
CTTCTACCTCTAGATGAAGA+AGG 0.495035 4_4:+18000084 None:intergenic
CATTTGATAGCAAAAGCTCT+AGG 0.498838 4_4:-18000969 Msa0672690:CDS
GAGAGTTCCTCCTCGACCTA+AGG 0.502667 4_4:-18000676 Msa0672690:CDS
AAGGAATGTCCTGTTTGTAA+AGG 0.503450 4_4:-18000786 Msa0672690:CDS
AACAGCATTAAATTCTGCAA+TGG 0.508273 4_4:-18000388 Msa0672690:CDS
CTTCGAGAGCGAGGCAGCGT+CGG 0.509799 4_4:-18001154 Msa0672690:CDS
CTGTTAGACCCTTCATCAAA+CGG 0.512392 4_4:-17998590 Msa0672690:CDS
GACCTTGAATCATATATCAA+TGG 0.517570 4_4:-18000342 Msa0672690:CDS
AAAGGGGAGGTAACTGAATC+GGG 0.517863 4_4:-18000768 Msa0672690:CDS
GCGAAGAACGGAGGGAGGAG+CGG 0.521333 4_4:-18001055 Msa0672690:CDS
ATTATTCCAATTTATGGACA+TGG 0.526065 4_4:-18000744 Msa0672690:CDS
GTAAAGTGGAGGAGAGTAGT+GGG 0.535109 4_4:-18000926 Msa0672690:CDS
TACAACTGATAGAAATGTAC+AGG 0.535539 4_4:-18000121 Msa0672690:CDS
GCAACAGCAGGTGATGTTCA+AGG 0.537071 4_4:-18001077 Msa0672690:CDS
TCGAGGAGGAACTCTCAAAC+CGG 0.538001 4_4:+18000683 None:intergenic
CTAGACCCTTCTTCATCTAG+AGG 0.541703 4_4:-18000090 Msa0672690:intron
GGGATAGTTGAAAGTGTGAA+AGG 0.543494 4_4:-18001011 Msa0672690:CDS
ACTCTAGGTGCCTTAGGTCG+AGG 0.546117 4_4:+18000666 None:intergenic
CTGATGGAAATGAAAGAAGC+CGG 0.547924 4_4:-18000702 Msa0672690:CDS
GTTGAATTTCTAGTAACAGT+AGG 0.548372 4_4:+18000285 None:intergenic
GAATTTCTAGTAACAGTAGG+AGG 0.555492 4_4:+18000288 None:intergenic
TGTCTAATACTCTCAACTCT+AGG 0.555708 4_4:+18000651 None:intergenic
GGATAGTTGAAAGTGTGAAA+GGG 0.557671 4_4:-18001010 Msa0672690:CDS
GTTTCAAGGTTGCTAGAGCA+AGG 0.560862 4_4:-18000435 Msa0672690:CDS
GATAGTTGAAAGTGTGAAAG+GGG 0.566431 4_4:-18001009 Msa0672690:CDS
GCGTTCATTTGATTCTATGT+TGG 0.571256 4_4:-18001237 Msa0672690:CDS
ACAGGAGAAACTGCAACAGC+AGG 0.572374 4_4:-18001089 Msa0672690:CDS
GTGATGTTCAAGGCGAAGAA+CGG 0.575661 4_4:-18001067 Msa0672690:CDS
CGAGAGCGAGGCAGCGTCGG+GGG 0.578008 4_4:-18001151 Msa0672690:CDS
TGGCGGCGGTGATTGTCTGA+TGG 0.578360 4_4:-18000718 Msa0672690:CDS
TAGTTGAAAGTGTGAAAGGG+GGG 0.581279 4_4:-18001007 Msa0672690:CDS
ATTTGATAGCAAAAGCTCTA+GGG 0.584132 4_4:-18000968 Msa0672690:CDS
TTCTACCTCTAGATGAAGAA+GGG 0.590516 4_4:+18000085 None:intergenic
GATTGATAATGGTAAAGTGG+AGG 0.594410 4_4:-18000937 Msa0672690:CDS
ACCATTGTTTCTCTCAGGTG+TGG 0.595758 4_4:+18000515 None:intergenic
ACGATGCTGATCAGGATGAA+GGG 0.597581 4_4:-18001031 Msa0672690:CDS
TATGGACATGGAAATGGCGG+CGG 0.603447 4_4:-18000732 Msa0672690:CDS
CAGACAGACAACAATGAACA+TGG 0.607844 4_4:-18000471 Msa0672690:CDS
GATAGCAAAAGCTCTAGGGA+TGG 0.616270 4_4:-18000964 Msa0672690:CDS
ATGTTCAAGGCGAAGAACGG+AGG 0.619140 4_4:-18001064 Msa0672690:CDS
AGACAGAAGTTGCTAACCCA+AGG 0.623915 4_4:-18000633 Msa0672690:CDS
TCGAGAGCGAGGCAGCGTCG+GGG 0.626763 4_4:-18001152 Msa0672690:CDS
TGTTCAAGGCGAAGAACGGA+GGG 0.630328 4_4:-18001063 Msa0672690:CDS
ATAGTTGAAAGTGTGAAAGG+GGG 0.631256 4_4:-18001008 Msa0672690:CDS
AAGCAATTACTTCGAGAGCG+AGG 0.636181 4_4:-18001163 Msa0672690:CDS
TGCAGCTGTAGAATCAGTCA+CGG 0.640246 4_4:+17998706 None:intergenic
ACCACACCTGAGAGAAACAA+TGG 0.640564 4_4:-18000516 Msa0672690:CDS
ATCAATGGTCACAATACAGG+AGG 0.640899 4_4:-18000327 Msa0672690:CDS
ATGTCCTGTTTGTAAAGGGG+AGG 0.641102 4_4:-18000781 Msa0672690:CDS
GTATGCCTATTCGAAAGCAA+AGG 0.642527 4_4:-18000805 Msa0672690:CDS
ATTTATGGACATGGAAATGG+CGG 0.647005 4_4:-18000735 Msa0672690:CDS
GGAATGTCCTGTTTGTAAAG+GGG 0.658869 4_4:-18000784 Msa0672690:CDS
CTATTGTCCAAAGTATTCGG+CGG 0.665724 4_4:-18000596 Msa0672690:CDS
GTACTGGTTTGATGATCCAA+AGG 0.668438 4_4:+18001266 None:intergenic
TCAAGGCGAAGAACGGAGGG+AGG 0.671112 4_4:-18001060 Msa0672690:CDS
AGGCTCAGAAATTCAGACAA+CGG 0.673554 4_4:-17998633 Msa0672690:CDS
CTAGGTGCCTTAGGTCGAGG+AGG 0.679868 4_4:+18000669 None:intergenic
TACGATAACTGATAGAAACA+CGG 0.689120 4_4:+18000825 None:intergenic
ACAAACCAGTCAGAGAGTCG+TGG 0.695607 4_4:-18000246 Msa0672690:CDS
AGTATGCATGCAAGTAAACG+AGG 0.704101 4_4:+17998462 None:intergenic
TGAATCCGAGAGGAGTTCGG+CGG 0.720440 4_4:+18001125 None:intergenic
ATTGGTTATCTGAATCCGAG+AGG 0.732391 4_4:+18001115 None:intergenic
ACAGACAACAATGAACATGG+TGG 0.773237 4_4:-18000468 Msa0672690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGAAAATTAATTTAAAATGA+AGG - chr4_4:18000586-18000605 Msa0672690:CDS 10.0%
!! CTTTGATTGTAATATTTGTT+TGG - chr4_4:17998589-17998608 Msa0672690:CDS 20.0%
!! AACATATTTGATATTTGTCT+TGG + chr4_4:17999592-17999611 None:intergenic 20.0%
!!! AGTTTTATTCAATAGATGTA+AGG - chr4_4:17999639-17999658 Msa0672690:intron 20.0%
!! TTAAACTGTTTATCCAAATA+GGG - chr4_4:17999898-17999917 Msa0672690:intron 20.0%
!! TCTAATAAAGAACATGTAAA+GGG + chr4_4:18000008-18000027 None:intergenic 20.0%
!! ATCTAATAAAGAACATGTAA+AGG + chr4_4:18000009-18000028 None:intergenic 20.0%
!!! TCTTTTGAATATCTAGTTTT+TGG - chr4_4:18000038-18000057 Msa0672690:intron 20.0%
!!! TATCATGATTGTTTCTTATA+AGG - chr4_4:18000241-18000260 Msa0672690:CDS 20.0%
!!! AGTTTGTTGTATATATCATA+TGG + chr4_4:18000299-18000318 None:intergenic 20.0%
!! AATCTTATTCAATAGATGTA+AGG - chr4_4:18001117-18001136 Msa0672690:CDS 20.0%
! ATTATTCCAATTTATGGACA+TGG - chr4_4:17998743-17998762 Msa0672690:intron 25.0%
! TTATCAACATTCCTACTTAA+AGG + chr4_4:17999319-17999338 None:intergenic 25.0%
!! ACTTATTTGAGATTATCTAC+TGG - chr4_4:17999682-17999701 Msa0672690:intron 25.0%
! GTTAAACTGTTTATCCAAAT+AGG - chr4_4:17999897-17999916 Msa0672690:intron 25.0%
! GTTCTTTATTAGATCTATCT+TGG - chr4_4:18000015-18000034 Msa0672690:intron 25.0%
!!! TATCTAGTTTTTGGATCTTT+TGG - chr4_4:18000047-18000066 Msa0672690:intron 25.0%
!! CATAAACTATAGAGTATTAG+AGG + chr4_4:18000167-18000186 None:intergenic 25.0%
! ACTCTAATGTTAAGCTAATT+AGG + chr4_4:18000399-18000418 None:intergenic 25.0%
!! ACTTAAGTTTTCTGTCTTTA+TGG + chr4_4:18000562-18000581 None:intergenic 25.0%
! CAAAAAAAGATAGAGACTTA+TGG - chr4_4:18000701-18000720 Msa0672690:CDS 25.0%
! TGACTGTTTGATATAACTTA+TGG - chr4_4:18001195-18001214 Msa0672690:CDS 25.0%
TATGTTGGAAGAACTTGAAT+CGG - chr4_4:17998265-17998284 Msa0672690:three_prime_UTR 30.0%
ATTCAGATAACCAATGTTAC+AGG - chr4_4:17998380-17998399 Msa0672690:three_prime_UTR 30.0%
! ATTTGATAGCAAAAGCTCTA+GGG - chr4_4:17998519-17998538 Msa0672690:exon 30.0%
!! AGAGATTGATAATGGTAAAG+TGG - chr4_4:17998547-17998566 Msa0672690:CDS 30.0%
TACGATAACTGATAGAAACA+CGG + chr4_4:17998665-17998684 None:intergenic 30.0%
TCGGGTATTATTCCAATTTA+TGG - chr4_4:17998737-17998756 Msa0672690:intron 30.0%
! CTTCTATTGTCCAAAGTATT+CGG - chr4_4:17998888-17998907 Msa0672690:intron 30.0%
AACAGCATTAAATTCTGCAA+TGG - chr4_4:17999099-17999118 Msa0672690:intron 30.0%
GACCTTGAATCATATATCAA+TGG - chr4_4:17999145-17999164 Msa0672690:intron 30.0%
GACCATTGATATATGATTCA+AGG + chr4_4:17999150-17999169 None:intergenic 30.0%
TATATCAATGGTCACAATAC+AGG - chr4_4:17999157-17999176 Msa0672690:intron 30.0%
!! GTTGAATTTCTAGTAACAGT+AGG + chr4_4:17999205-17999224 None:intergenic 30.0%
TACAACTGATAGAAATGTAC+AGG - chr4_4:17999366-17999385 Msa0672690:intron 30.0%
TCAAATAAGTCAATCCAAAC+AGG + chr4_4:17999672-17999691 None:intergenic 30.0%
CATACTGTAACAAACATAAG+AGG + chr4_4:17999942-17999961 None:intergenic 30.0%
! CTCTTATGTTTGTTACAGTA+TGG - chr4_4:17999940-17999959 Msa0672690:intron 30.0%
! TTTTGGTCAGTATTCAGATT+GGG - chr4_4:18000064-18000083 Msa0672690:intron 30.0%
GATTACTTGAATACAACCTT+TGG - chr4_4:18000134-18000153 Msa0672690:CDS 30.0%
CATGCAACATGTTGTATTAT+CGG - chr4_4:18000209-18000228 Msa0672690:CDS 30.0%
AGTCATTTCGATATTCTTGT+TGG + chr4_4:18000963-18000982 None:intergenic 30.0%
! AAATGACTGTCTTTTCTGTT+AGG - chr4_4:18000975-18000994 Msa0672690:CDS 30.0%
! AATGACTGTCTTTTCTGTTA+GGG - chr4_4:18000976-18000995 Msa0672690:CDS 30.0%
TGTAAGGATATTTGCATGTT+TGG - chr4_4:18001133-18001152 Msa0672690:CDS 30.0%
! CTTATTCTCATAAGCTCTTT+TGG - chr4_4:18001253-18001272 Msa0672690:CDS 30.0%
! AAGCTCTTTTGGATAACTTA+TGG - chr4_4:18001264-18001283 Msa0672690:CDS 30.0%
GCGTTCATTTGATTCTATGT+TGG - chr4_4:17998250-17998269 Msa0672690:three_prime_UTR 35.0%
! GGATAGTTGAAAGTGTGAAA+GGG - chr4_4:17998477-17998496 Msa0672690:three_prime_UTR 35.0%
! GATAGTTGAAAGTGTGAAAG+GGG - chr4_4:17998478-17998497 Msa0672690:three_prime_UTR 35.0%
! ATAGTTGAAAGTGTGAAAGG+GGG - chr4_4:17998479-17998498 Msa0672690:three_prime_UTR 35.0%
! CATTTGATAGCAAAAGCTCT+AGG - chr4_4:17998518-17998537 Msa0672690:exon 35.0%
!! GATTGATAATGGTAAAGTGG+AGG - chr4_4:17998550-17998569 Msa0672690:CDS 35.0%
!!! GTTGTGGTCATTTGTTTTGT+TGG - chr4_4:17998639-17998658 Msa0672690:CDS 35.0%
ACATTCCTTTGCTTTCGAAT+AGG + chr4_4:17998690-17998709 None:intergenic 35.0%
AAGGAATGTCCTGTTTGTAA+AGG - chr4_4:17998701-17998720 Msa0672690:CDS 35.0%
AGGAATGTCCTGTTTGTAAA+GGG - chr4_4:17998702-17998721 Msa0672690:CDS 35.0%
CCATTTCCATGTCCATAAAT+TGG + chr4_4:17998752-17998771 None:intergenic 35.0%
CCAATTTATGGACATGGAAA+TGG - chr4_4:17998749-17998768 Msa0672690:intron 35.0%
ATTTATGGACATGGAAATGG+CGG - chr4_4:17998752-17998771 Msa0672690:intron 35.0%
TGTCTAATACTCTCAACTCT+AGG + chr4_4:17998839-17998858 None:intergenic 35.0%
! TTCTGCTGAAAGATTAGTTC+AGG - chr4_4:17999123-17999142 Msa0672690:intron 35.0%
!! GAATTTCTAGTAACAGTAGG+AGG + chr4_4:17999202-17999221 None:intergenic 35.0%
CTTCTCTTTCTCCTTTAAGT+AGG - chr4_4:17999305-17999324 Msa0672690:intron 35.0%
TTCTACCTCTAGATGAAGAA+GGG + chr4_4:17999405-17999424 None:intergenic 35.0%
! ATGACGGTCTTTTATGTAAG+TGG - chr4_4:17999483-17999502 Msa0672690:intron 35.0%
TGTAAGGATATTTGCCTGTT+TGG - chr4_4:17999655-17999674 Msa0672690:intron 35.0%
AGAGGATATTGACAATTAGC+AGG + chr4_4:17999924-17999943 None:intergenic 35.0%
! CTTTTGGTCAGTATTCAGAT+TGG - chr4_4:18000063-18000082 Msa0672690:intron 35.0%
TATTAGAGGCTCTTATCCAA+AGG + chr4_4:18000153-18000172 None:intergenic 35.0%
GCAATGCACATGATCTTTAT+GGG + chr4_4:18000190-18000209 None:intergenic 35.0%
TGCAATGCACATGATCTTTA+TGG + chr4_4:18000191-18000210 None:intergenic 35.0%
TATTTCCACTCCTTCTGTAT+TGG - chr4_4:18000453-18000472 Msa0672690:CDS 35.0%
ATCCTGTTGTTGCATGTAAT+AGG - chr4_4:18000735-18000754 Msa0672690:CDS 35.0%
TCCTGTTGTTGCATGTAATA+GGG - chr4_4:18000736-18000755 Msa0672690:CDS 35.0%
CTTCTGTGTCTCTGTTAAAT+AGG - chr4_4:18000808-18000827 Msa0672690:CDS 35.0%
! GTCGATAATGTTGCTGTTAT+AGG - chr4_4:18000834-18000853 Msa0672690:CDS 35.0%
TTCTTCTACCGTTTGATGAA+GGG + chr4_4:18000908-18000927 None:intergenic 35.0%
TCAAACGGTAGAAGAAGAAA+TGG - chr4_4:18000912-18000931 Msa0672690:CDS 35.0%
TGATTTGAATCAGGAGCCTT+TGG - chr4_4:17998205-17998224 Msa0672690:three_prime_UTR 40.0%
!! GTACTGGTTTGATGATCCAA+AGG + chr4_4:17998224-17998243 None:intergenic 40.0%
! AAATGAACGCACTGATGTAC+TGG + chr4_4:17998240-17998259 None:intergenic 40.0%
TTGCTTCAAGGTGTGTGATT+CGG + chr4_4:17998310-17998329 None:intergenic 40.0%
CTCTCGAAGTAATTGCTTCA+AGG + chr4_4:17998322-17998341 None:intergenic 40.0%
ATTGGTTATCTGAATCCGAG+AGG + chr4_4:17998375-17998394 None:intergenic 40.0%
TGCAGTTTCTCCTGTAACAT+TGG + chr4_4:17998393-17998412 None:intergenic 40.0%
! GGGATAGTTGAAAGTGTGAA+AGG - chr4_4:17998476-17998495 Msa0672690:three_prime_UTR 40.0%
! TAGTTGAAAGTGTGAAAGGG+GGG - chr4_4:17998480-17998499 Msa0672690:three_prime_UTR 40.0%
GGGATGGAAGAGATTGATAA+TGG - chr4_4:17998539-17998558 Msa0672690:CDS 40.0%
!!! GATCCTGTTTTGACATGTTG+TGG - chr4_4:17998623-17998642 Msa0672690:CDS 40.0%
TGACCACAACATGTCAAAAC+AGG + chr4_4:17998629-17998648 None:intergenic 40.0%
GTATGCCTATTCGAAAGCAA+AGG - chr4_4:17998682-17998701 Msa0672690:CDS 40.0%
GGAATGTCCTGTTTGTAAAG+GGG - chr4_4:17998703-17998722 Msa0672690:CDS 40.0%
TAAAGGGGAGGTAACTGAAT+CGG - chr4_4:17998718-17998737 Msa0672690:CDS 40.0%
CTGATGGAAATGAAAGAAGC+CGG - chr4_4:17998785-17998804 Msa0672690:intron 40.0%
AGAAGAAGAAGATGCTCCTT+GGG + chr4_4:17998873-17998892 None:intergenic 40.0%
TAGAAGAAGAAGATGCTCCT+TGG + chr4_4:17998874-17998893 None:intergenic 40.0%
! CTATTGTCCAAAGTATTCGG+CGG - chr4_4:17998891-17998910 Msa0672690:intron 40.0%
TATGAAACCGCCGAATACTT+TGG + chr4_4:17998901-17998920 None:intergenic 40.0%
!! CATAACCGAATTGGTGGATT+TGG - chr4_4:17998917-17998936 Msa0672690:intron 40.0%
TCTCAGGTGTGGTACTATTA+GGG + chr4_4:17998964-17998983 None:intergenic 40.0%
CAGACAGACAACAATGAACA+TGG - chr4_4:17999016-17999035 Msa0672690:intron 40.0%
ACAGACAACAATGAACATGG+TGG - chr4_4:17999019-17999038 Msa0672690:intron 40.0%
ATCAATGGTCACAATACAGG+AGG - chr4_4:17999160-17999179 Msa0672690:intron 40.0%
!! GTTGATAATGTTGCTGTTGC+AGG - chr4_4:17999331-17999350 Msa0672690:intron 40.0%
CTTCTACCTCTAGATGAAGA+AGG + chr4_4:17999406-17999425 None:intergenic 40.0%
TCTTCATCTAGAGGTAGAAG+AGG - chr4_4:17999406-17999425 Msa0672690:intron 40.0%
CGCAATCTTCTTCTTCTTCT+TGG + chr4_4:17999463-17999482 None:intergenic 40.0%
GAAGAAGAAGATTGCGATGA+CGG - chr4_4:17999467-17999486 Msa0672690:intron 40.0%
AGTATGCATGCATGTAAACG+AGG + chr4_4:17999534-17999553 None:intergenic 40.0%
TGTCTCACTTGAGTAAGTTC+AGG - chr4_4:17999963-17999982 Msa0672690:intron 40.0%
! CAACAAACTAGAAGCATGTG+TGG - chr4_4:18000310-18000329 Msa0672690:CDS 40.0%
ACATGCAACAACAGGATATC+TGG + chr4_4:18000732-18000751 None:intergenic 40.0%
TCCCTATTACATGCAACAAC+AGG + chr4_4:18000740-18000759 None:intergenic 40.0%
AGGCTCAGAAATTCAGACAA+CGG - chr4_4:18000854-18000873 Msa0672690:CDS 40.0%
CTGTTAGACCCTTCATCAAA+CGG - chr4_4:18000897-18000916 Msa0672690:CDS 40.0%
CTTCTTCTACCGTTTGATGA+AGG + chr4_4:18000909-18000928 None:intergenic 40.0%
AGTATGCATGCAAGTAAACG+AGG + chr4_4:18001028-18001047 None:intergenic 40.0%
AAGCAATTACTTCGAGAGCG+AGG - chr4_4:17998324-17998343 Msa0672690:three_prime_UTR 45.0%
ATCTGAATCCGAGAGGAGTT+CGG + chr4_4:17998368-17998387 None:intergenic 45.0%
GTGATGTTCAAGGCGAAGAA+CGG - chr4_4:17998420-17998439 Msa0672690:three_prime_UTR 45.0%
AACGATGCTGATCAGGATGA+AGG - chr4_4:17998455-17998474 Msa0672690:three_prime_UTR 45.0%
ACGATGCTGATCAGGATGAA+GGG - chr4_4:17998456-17998475 Msa0672690:three_prime_UTR 45.0%
AAAGTGTGAAAGGGGGGAAA+AGG - chr4_4:17998486-17998505 Msa0672690:three_prime_UTR 45.0%
!! GATAGCAAAAGCTCTAGGGA+TGG - chr4_4:17998523-17998542 Msa0672690:exon 45.0%
GTAAAGTGGAGGAGAGTAGT+GGG - chr4_4:17998561-17998580 Msa0672690:CDS 45.0%
ATGTCCTGTTTGTAAAGGGG+AGG - chr4_4:17998706-17998725 Msa0672690:CDS 45.0%
GTTACCTCCCCTTTACAAAC+AGG + chr4_4:17998713-17998732 None:intergenic 45.0%
AAAGGGGAGGTAACTGAATC+GGG - chr4_4:17998719-17998738 Msa0672690:CDS 45.0%
AGACAGAAGTTGCTAACCCA+AGG - chr4_4:17998854-17998873 Msa0672690:intron 45.0%
CGGTTTCATAACCGAATTGG+TGG - chr4_4:17998911-17998930 Msa0672690:intron 45.0%
GCTCTCCAAATCCACCAATT+CGG + chr4_4:17998925-17998944 None:intergenic 45.0%
CTCTCAGGTGTGGTACTATT+AGG + chr4_4:17998965-17998984 None:intergenic 45.0%
ACCACACCTGAGAGAAACAA+TGG - chr4_4:17998971-17998990 Msa0672690:intron 45.0%
! ACCATTGTTTCTCTCAGGTG+TGG + chr4_4:17998975-17998994 None:intergenic 45.0%
! GGCAAACCATTGTTTCTCTC+AGG + chr4_4:17998980-17998999 None:intergenic 45.0%
TGAACATGGTGGTTCTCAAC+AGG - chr4_4:17999030-17999049 Msa0672690:intron 45.0%
GTGGTTCTCAACAGGTTTCA+AGG - chr4_4:17999038-17999057 Msa0672690:intron 45.0%
GTTTCAAGGTTGCTAGAGCA+AGG - chr4_4:17999052-17999071 Msa0672690:intron 45.0%
CTAGACCCTTCTTCATCTAG+AGG - chr4_4:17999397-17999416 Msa0672690:intron 45.0%
GACAATTAGCAGGCCCTATT+TGG + chr4_4:17999914-17999933 None:intergenic 45.0%
ACCACAAACTGGAGTCAATG+AGG + chr4_4:18000098-18000117 None:intergenic 45.0%
!! TCATTGACTCCAGTTTGTGG+TGG - chr4_4:18000097-18000116 Msa0672690:CDS 45.0%
TTGTGCCAATACAGAAGGAG+TGG + chr4_4:18000461-18000480 None:intergenic 45.0%
! ACTCCTTCTGTATTGGCACA+AGG - chr4_4:18000460-18000479 Msa0672690:CDS 45.0%
ATCGTCATACGAGTTGCTGT+CGG + chr4_4:18000486-18000505 None:intergenic 45.0%
TGCAGCTGTAGAATCAGTCA+CGG + chr4_4:18000784-18000803 None:intergenic 45.0%
ACAGGAGAAACTGCAACAGC+AGG - chr4_4:17998398-17998417 Msa0672690:three_prime_UTR 50.0%
GCAACAGCAGGTGATGTTCA+AGG - chr4_4:17998410-17998429 Msa0672690:three_prime_UTR 50.0%
ATGTTCAAGGCGAAGAACGG+AGG - chr4_4:17998423-17998442 Msa0672690:three_prime_UTR 50.0%
TGTTCAAGGCGAAGAACGGA+GGG - chr4_4:17998424-17998443 Msa0672690:three_prime_UTR 50.0%
GGTAAAGTGGAGGAGAGTAG+TGG - chr4_4:17998560-17998579 Msa0672690:CDS 50.0%
TATGGACATGGAAATGGCGG+CGG - chr4_4:17998755-17998774 Msa0672690:intron 50.0%
TCGAGGAGGAACTCTCAAAC+CGG + chr4_4:17998807-17998826 None:intergenic 50.0%
CTCTCAACTCTAGGTGCCTT+AGG + chr4_4:17998830-17998849 None:intergenic 50.0%
CGGCGGTTTCATAACCGAAT+TGG - chr4_4:17998908-17998927 Msa0672690:intron 50.0%
ACAAACCAGTCAGAGAGTCG+TGG - chr4_4:17999241-17999260 Msa0672690:intron 50.0%
AGCTGCTGCAGCTACAGAAT+TGG + chr4_4:17999287-17999306 None:intergenic 50.0%
CAAACTGGAGTCAATGAGGC+AGG + chr4_4:18000094-18000113 None:intergenic 50.0%
!! GCCTCATTGACTCCAGTTTG+TGG - chr4_4:18000094-18000113 Msa0672690:CDS 50.0%
TTGACTCCAGTTTGTGGTGG+TGG - chr4_4:18000100-18000119 Msa0672690:CDS 50.0%
TGACTCCAGTTTGTGGTGGT+GGG - chr4_4:18000101-18000120 Msa0672690:CDS 50.0%
TGAATCCGAGAGGAGTTCGG+CGG + chr4_4:17998365-17998384 None:intergenic 55.0%
GAGAGTTCCTCCTCGACCTA+AGG - chr4_4:17998811-17998830 Msa0672690:intron 55.0%
ACTCTAGGTGCCTTAGGTCG+AGG + chr4_4:17998824-17998843 None:intergenic 55.0%
CTTGACCACGACTCTCTGAC+TGG + chr4_4:17999249-17999268 None:intergenic 55.0%
! GACTCCAGTTTGTGGTGGTG+GGG - chr4_4:18000102-18000121 Msa0672690:CDS 55.0%
ATGACCCCACCACCACAAAC+TGG + chr4_4:18000109-18000128 None:intergenic 55.0%
!! AGTTTGTGGTGGTGGGGTCA+TGG - chr4_4:18000108-18000127 Msa0672690:CDS 55.0%
! CGGCCTTGTGCCAATACAGA+AGG + chr4_4:18000466-18000485 None:intergenic 55.0%
TCAAGGCGAAGAACGGAGGG+AGG - chr4_4:17998427-17998446 Msa0672690:three_prime_UTR 60.0%
GGAGCGGAACGATGCTGATC+AGG - chr4_4:17998448-17998467 Msa0672690:three_prime_UTR 60.0%
TGGCGGCGGTGATTGTCTGA+TGG - chr4_4:17998769-17998788 Msa0672690:intron 60.0%
CTAGGTGCCTTAGGTCGAGG+AGG + chr4_4:17998821-17998840 None:intergenic 60.0%
GTCTGCGTGCGAGACTGAAC+AGG + chr4_4:17999001-17999020 None:intergenic 60.0%
CTTCGAGAGCGAGGCAGCGT+CGG - chr4_4:17998333-17998352 Msa0672690:three_prime_UTR 65.0%
TTCGAGAGCGAGGCAGCGTC+GGG - chr4_4:17998334-17998353 Msa0672690:three_prime_UTR 65.0%
GGTTGCCGCCGAACTCCTCT+CGG - chr4_4:17998357-17998376 Msa0672690:three_prime_UTR 65.0%
GCGAAGAACGGAGGGAGGAG+CGG - chr4_4:17998432-17998451 Msa0672690:three_prime_UTR 65.0%
TCGAGAGCGAGGCAGCGTCG+GGG - chr4_4:17998335-17998354 Msa0672690:three_prime_UTR 70.0%
! CGAGAGCGAGGCAGCGTCGG+GGG - chr4_4:17998336-17998355 Msa0672690:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 17998197 18001312 17998197 ID=Msa0672690;Name=Msa0672690
chr4_4 mRNA 17998197 18001312 17998197 ID=Msa0672690-mRNA-1;Parent=Msa0672690;Name=Msa0672690-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0.5|1|1|1|2|332|481
chr4_4 exon 17998197 17998752 17998197 ID=Msa0672690-mRNA-1:exon:5270;Parent=Msa0672690-mRNA-1
chr4_4 exon 18000091 18001312 18000091 ID=Msa0672690-mRNA-1:exon:5269;Parent=Msa0672690-mRNA-1
chr4_4 CDS 18000091 18001312 18000091 ID=Msa0672690-mRNA-1:cds;Parent=Msa0672690-mRNA-1
chr4_4 CDS 17998529 17998752 17998529 ID=Msa0672690-mRNA-1:cds;Parent=Msa0672690-mRNA-1
chr4_4 three_prime_UTR 17998197 17998528 17998197 ID=Msa0672690-mRNA-1:three_prime_utr;Parent=Msa0672690-mRNA-1
Gene Sequence

>Msa0672690

ATGGAGCTTGATTTGAATCAGGAGCCTTTGGATCATCAAACCAGTACATCAGTGCGTTCATTTGATTCTATGTTGGAAGAACTTGAATCGGCTGAAGAAAATATACGAAACCGAATCACACACCTTGAAGCAATTACTTCGAGAGCGAGGCAGCGTCGGGGGTTGCCGCCGAACTCCTCTCGGATTCAGATAACCAATGTTACAGGAGAAACTGCAACAGCAGGTGATGTTCAAGGCGAAGAACGGAGGGAGGAGCGGAACGATGCTGATCAGGATGAAGGGATAGTTGAAAGTGTGAAAGGGGGGAAAAGGAAAAGTTCGCATTTGATAGCAAAAGCTCTAGGGATGGAAGAGATTGATAATGGTAAAGTGGAGGAGAGTAGTGGGAATTTCTTTGATTGTAATATTTGTTTGGATATTGCAAGAGATCCTGTTTTGACATGTTGTGGTCATTTGTTTTGTTGGCCGTGTTTCTATCAGTTATCGTATGCCTATTCGAAAGCAAAGGAATGTCCTGTTTGTAAAGGGGAGGTAACTGAATCGGGTATTATTCCAATTTATGGACATGGAAATGGCGGCGGTGATTGTCTGATGGAAATGAAAGAAGCCGGTTTGAGAGTTCCTCCTCGACCTAAGGCACCTAGAGTTGAGAGTATTAGACAGAAGTTGCTAACCCAAGGAGCATCTTCTTCTTCTATTGTCCAAAGTATTCGGCGGTTTCATAACCGAATTGGTGGATTTGGAGAGCAAGTTCAGTTAGAAAGCCCTAATAGTACCACACCTGAGAGAAACAATGGTTTGCCTGTTCAGTCTCGCACGCAGACAGACAACAATGAACATGGTGGTTCTCAACAGGTTTCAAGGTTGCTAGAGCAAGGAGCTTCTTCGTTTTCGTCACTTTCAACAGCATTAAATTCTGCAATGGATTCTGCTGAAAGATTAGTTCAGGACCTTGAATCATATATCAATGGTCACAATACAGGAGGAAGCAGAGAGCAAAATCCTCCTACTGTTACTAGAAATTCAACTTTAAGTGTCGCTGCTACAAACCAGTCAGAGAGTCGTGGTCAAGATGTTGTTGATCTGACCAATTCTGTAGCTGCAGCAGCTTCTCTTTCTCCTTTAAGTAGGAATGTTGATAATGTTGCTGTTGCAGGCTCACAAATTCATACAACTGATAGAAATGTACAGGTTAGTTTGCTAGACCCTTCTTCATCTAGAGGGAATCTTGCTCAAGATGTTGTTGCCGTGACTGATTCTACAGCTGCAGCAGCTTCTGTGTCTCTGTTAAATAGGAATGTCGATAATGTTGCTGTTATAGGCTCAGAAATTCAGACAACGGATAGAAACTTACAGATTAGACTGTTAGACCCTTCATCAAACGGTAGAAGAAGAAATGGCGTTTCAAGACAAGTTTCAAATGAACCAACAAGAATATCGAAATGA

Protein sequence

>Msa0672690

MELDLNQEPLDHQTSTSVRSFDSMLEELESAEENIRNRITHLEAITSRARQRRGLPPNSSRIQITNVTGETATAGDVQGEERREERNDADQDEGIVESVKGGKRKSSHLIAKALGMEEIDNGKVEESSGNFFDCNICLDIARDPVLTCCGHLFCWPCFYQLSYAYSKAKECPVCKGEVTESGIIPIYGHGNGGGDCLMEMKEAGLRVPPRPKAPRVESIRQKLLTQGASSSSIVQSIRRFHNRIGGFGEQVQLESPNSTTPERNNGLPVQSRTQTDNNEHGGSQQVSRLLEQGASSFSSLSTALNSAMDSAERLVQDLESYINGHNTGGSREQNPPTVTRNSTLSVAATNQSESRGQDVVDLTNSVAAAASLSPLSRNVDNVAVAGSQIHTTDRNVQVSLLDPSSSRGNLAQDVVAVTDSTAAAASVSLLNRNVDNVAVIGSEIQTTDRNLQIRLLDPSSNGRRRNGVSRQVSNEPTRISK*