AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0963190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0963190 MtrunA17_Chr6g0483491 95.794 214 4 1 13 221 225 438 7.37e-147 416
Msa0963190 MtrunA17_Chr7g0236841 94.393 214 7 1 13 221 225 438 1.47e-145 412
Msa0963190 MtrunA17_Chr5g0429221 58.115 191 73 2 21 211 234 417 6.02e-63 201
Msa0963190 MtrunA17_Chr1g0155691 61.146 157 59 1 31 187 1 155 1.85e-50 163
Msa0963190 MtrunA17_Chr1g0155201 51.099 182 76 3 21 202 117 285 4.06e-48 161
Msa0963190 MtrunA17_Chr2g0310581 45.026 191 97 2 13 195 268 458 1.07e-43 153
Msa0963190 MtrunA17_Chr7g0236831 38.806 134 82 0 21 154 463 596 1.81e-26 106
Msa0963190 MtrunA17_Chr3g0095031 40.000 150 86 3 13 160 313 460 1.98e-25 103
Msa0963190 MtrunA17_Chr3g0098121 37.415 147 92 0 21 167 384 530 2.16e-25 103
Msa0963190 MtrunA17_Chr5g0442191 39.744 156 84 4 7 160 304 451 2.38e-25 103
Msa0963190 MtrunA17_Chr2g0300291 37.415 147 92 0 21 167 374 520 8.98e-25 101
Msa0963190 MtrunA17_Chr4g0076491 37.984 129 80 0 24 152 540 668 1.77e-23 98.2
Msa0963190 MtrunA17_Chr3g0121351 40.476 126 75 0 36 161 407 532 2.29e-23 97.8
Msa0963190 MtrunA17_Chr4g0040761 34.459 148 94 2 22 167 248 394 2.43e-23 97.8
Msa0963190 MtrunA17_Chr1g0193491 38.843 121 73 1 33 153 361 480 2.90e-23 97.4
Msa0963190 MtrunA17_Chr6g0466611 41.304 138 77 3 20 154 385 521 3.86e-23 97.1
Msa0963190 MtrunA17_Chr2g0307471 44.954 109 59 1 37 144 341 449 3.90e-23 97.1
Msa0963190 MtrunA17_Chr7g0247191 35.075 134 87 0 27 160 380 513 5.08e-23 96.7
Msa0963190 MtrunA17_Chr7g0247181 34.074 135 89 0 27 161 370 504 7.95e-23 95.9
Msa0963190 MtrunA17_Chr1g0176041 40.476 126 75 0 36 161 415 540 8.10e-23 95.9
Msa0963190 MtrunA17_Chr7g0247221 34.074 135 89 0 27 161 373 507 8.25e-23 95.9
Msa0963190 MtrunA17_Chr5g0409981 52.439 82 39 0 52 133 371 452 8.57e-23 95.9
Msa0963190 MtrunA17_Chr2g0297261 34.328 134 88 0 34 167 273 406 1.48e-22 94.4
Msa0963190 MtrunA17_Chr3g0107851 44.144 111 59 1 43 153 382 489 1.77e-22 95.1
Msa0963190 MtrunA17_Chr6g0449741 37.692 130 77 2 24 152 502 628 5.61e-22 93.6
Msa0963190 MtrunA17_Chr2g0299681 34.307 137 90 0 31 167 277 413 9.39e-22 92.4
Msa0963190 MtrunA17_Chr2g0277821 36.207 116 74 0 37 152 754 869 9.85e-22 93.2
Msa0963190 MtrunA17_Chr7g0271121 37.903 124 76 1 33 156 352 474 1.21e-21 92.8
Msa0963190 MtrunA17_Chr8g0342861 32.847 137 92 0 31 167 277 413 2.18e-21 91.3
Msa0963190 MtrunA17_Chr3g0114081 38.462 143 76 3 16 147 252 393 2.56e-21 91.7
Msa0963190 MtrunA17_Chr2g0329931 33.577 137 91 0 31 167 277 413 3.60e-21 90.5
Msa0963190 MtrunA17_Chr2g0301281 36.076 158 88 4 7 160 336 484 4.49e-21 90.9
Msa0963190 MtrunA17_Chr2g0293631 42.105 114 59 3 33 144 740 848 4.62e-21 91.3
Msa0963190 MtrunA17_Chr1g0200181 43.678 87 49 0 57 143 419 505 5.25e-21 90.9
Msa0963190 MtrunA17_Chr2g0330401 43.860 114 63 1 24 136 330 443 5.54e-21 90.5
Msa0963190 MtrunA17_Chr4g0062301 38.298 141 79 4 37 173 348 484 5.74e-21 90.5
Msa0963190 MtrunA17_Chr4g0063551 40.476 126 75 0 36 161 404 529 6.19e-21 90.5
Msa0963190 MtrunA17_Chr1g0157691 34.091 132 84 2 12 143 379 507 6.30e-21 90.5
Msa0963190 MtrunA17_Chr4g0070981 33.577 137 91 0 31 167 277 413 6.52e-21 90.1
Msa0963190 MtrunA17_Chr6g0449911 36.885 122 72 2 33 152 409 527 3.39e-20 88.6
Msa0963190 MtrunA17_Chr4g0004301 38.519 135 77 2 23 154 323 454 4.27e-20 88.2
Msa0963190 MtrunA17_Chr4g0029191 34.177 158 91 4 7 160 339 487 5.88e-20 87.8
Msa0963190 MtrunA17_Chr5g0434301 37.778 135 78 2 23 154 323 454 1.63e-19 86.3
Msa0963190 MtrunA17_Chr7g0263771 36.792 106 67 0 63 168 401 506 3.87e-19 85.5
Msa0963190 MtrunA17_Chr3g0137901 39.216 102 62 0 37 138 45 146 9.73e-19 80.5
Msa0963190 MtrunA17_Chr7g0270131 37.097 124 76 2 23 144 465 588 1.26e-18 84.0
Msa0963190 MtrunA17_Chr4g0025141 32.317 164 90 5 25 177 76 229 4.27e-18 80.1
Msa0963190 MtrunA17_Chr4g0003441 36.641 131 69 2 37 158 353 478 1.02e-17 81.3
Msa0963190 MtrunA17_Chr1g0149251 39.216 102 62 0 37 138 209 310 1.34e-17 80.1
Msa0963190 MtrunA17_Chr8g0354761 33.884 121 79 1 25 144 246 366 4.34e-17 79.3
Msa0963190 MtrunA17_Chr2g0309551 33.962 106 70 0 37 142 410 515 4.55e-17 79.3
Msa0963190 MtrunA17_Chr4g0034411 35.948 153 89 6 20 168 308 455 2.31e-16 77.4
Msa0963190 MtrunA17_Chr8g0342851 33.582 134 89 0 34 167 186 319 2.62e-16 76.3
Msa0963190 MtrunA17_Chr1g0179761 32.886 149 84 4 25 158 324 471 8.59e-16 75.5
Msa0963190 MtrunA17_Chr8g0386451 34.559 136 85 1 26 157 534 669 9.70e-16 75.5
Msa0963190 MtrunA17_Chr5g0443991 33.566 143 88 4 20 159 308 446 2.27e-15 74.3
Msa0963190 MtrunA17_Chr8g0364251 37.273 110 64 2 36 143 438 544 5.33e-15 73.2
Msa0963190 MtrunA17_Chr8g0347151 35.088 114 73 1 37 150 462 574 5.69e-15 73.2
Msa0963190 MtrunA17_Chr1g0204391 40.594 101 56 2 36 136 316 412 1.35e-14 72.0
Msa0963190 MtrunA17_Chr6g0475251 39.048 105 60 2 32 136 355 455 7.79e-14 70.1
Msa0963190 MtrunA17_Chr8g0347161 34.211 114 74 1 37 150 363 475 8.74e-14 69.7
Msa0963190 MtrunA17_Chr8g0347171 33.884 121 80 0 37 157 421 541 1.85e-12 65.9
Msa0963190 MtrunA17_Chr3g0145781 33.051 118 72 3 54 164 419 536 7.49e-12 63.9
Msa0963190 MtrunA17_Chr6g0461751 35.714 98 58 1 46 138 394 491 7.56e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0963190 AT5G60990.1 74.129 201 47 2 19 218 246 442 1.91e-105 311
Msa0963190 AT1G16280.1 46.784 171 88 1 21 188 287 457 5.68e-44 154
Msa0963190 AT3G22330.1 40.146 137 78 3 27 161 342 476 3.32e-25 103
Msa0963190 AT5G65900.1 40.000 150 85 3 23 170 389 535 1.32e-24 101
Msa0963190 AT3G19760.1 36.434 129 82 0 34 162 275 403 4.28e-24 99.0
Msa0963190 AT4G16630.1 38.235 136 84 0 21 156 400 535 6.28e-24 99.8
Msa0963190 AT3G22310.2 40.000 130 75 2 33 161 361 488 8.80e-24 99.4
Msa0963190 AT3G22310.1 40.000 130 75 2 33 161 361 488 8.96e-24 99.4
Msa0963190 AT1G31970.1 51.765 85 41 0 49 133 382 466 1.59e-23 98.2
Msa0963190 AT3G06480.1 36.232 138 83 2 33 168 680 814 2.93e-23 97.8
Msa0963190 AT4G15850.1 36.620 142 86 2 23 160 325 466 3.68e-23 97.4
Msa0963190 AT3G61240.2 32.639 144 97 0 27 170 355 498 3.99e-23 97.1
Msa0963190 AT3G61240.1 32.639 144 97 0 27 170 355 498 3.99e-23 97.1
Msa0963190 AT2G33730.1 38.636 132 75 2 24 152 567 695 1.06e-22 96.3
Msa0963190 AT4G00660.1 31.250 144 99 0 27 170 362 505 1.74e-22 95.1
Msa0963190 AT4G00660.2 31.250 144 99 0 27 170 362 505 1.74e-22 95.1
Msa0963190 AT3G58510.1 38.060 134 80 1 29 159 404 537 2.28e-22 95.1
Msa0963190 AT3G58510.3 38.060 134 80 1 29 159 404 537 2.28e-22 95.1
Msa0963190 AT3G58510.2 38.060 134 80 1 29 159 404 537 2.28e-22 95.1
Msa0963190 AT5G05450.1 39.310 145 83 2 24 164 265 408 4.26e-22 94.4
Msa0963190 AT3G01540.1 41.818 110 59 2 29 136 399 505 5.03e-22 94.4
Msa0963190 AT3G01540.4 41.818 110 59 2 29 136 399 505 5.28e-22 94.0
Msa0963190 AT3G01540.2 41.818 110 59 2 29 136 399 505 5.28e-22 94.0
Msa0963190 AT3G01540.3 41.818 110 59 2 29 136 399 505 5.28e-22 94.0
Msa0963190 AT2G45810.1 34.074 135 89 0 27 161 385 519 6.63e-22 93.6
Msa0963190 AT2G42520.2 40.157 127 73 1 36 159 421 547 8.44e-22 93.6
Msa0963190 AT2G42520.1 40.157 127 73 1 36 159 421 547 8.44e-22 93.6
Msa0963190 AT2G42520.3 40.157 127 73 1 36 159 421 547 8.44e-22 93.6
Msa0963190 AT3G58570.1 40.800 125 74 0 36 160 408 532 1.44e-21 92.8
Msa0963190 AT5G26742.1 38.843 121 73 1 33 153 351 470 1.87e-21 92.4
Msa0963190 AT5G26742.2 38.843 121 73 1 33 153 351 470 1.87e-21 92.4
Msa0963190 AT5G26742.3 38.843 121 73 1 33 153 258 377 2.47e-21 92.0
Msa0963190 AT1G71370.1 41.600 125 69 2 24 144 256 380 2.59e-21 92.0
Msa0963190 AT1G51380.1 36.220 127 81 0 36 162 264 390 4.17e-21 90.5
Msa0963190 AT4G09730.1 38.971 136 79 3 20 152 356 490 4.51e-21 91.3
Msa0963190 AT3G13920.4 32.847 137 92 0 31 167 271 407 6.25e-21 90.5
Msa0963190 AT3G18600.1 39.706 136 79 2 24 156 325 460 6.77e-21 90.9
Msa0963190 AT3G13920.1 32.847 137 92 0 31 167 276 412 6.78e-21 90.1
Msa0963190 AT3G13920.3 32.847 137 92 0 31 167 266 402 7.74e-21 90.1
Msa0963190 AT5G51280.1 33.333 135 81 2 12 143 379 507 8.06e-21 90.5
Msa0963190 AT1G55150.1 43.860 114 63 1 24 136 334 447 1.33e-20 89.7
Msa0963190 AT5G14610.7 40.909 110 60 2 29 136 271 377 1.34e-20 89.7
Msa0963190 AT5G14610.3 40.909 110 60 2 29 136 271 377 1.34e-20 89.7
Msa0963190 AT5G14610.5 40.909 110 60 2 29 136 410 516 1.37e-20 90.1
Msa0963190 AT1G54270.2 32.847 137 92 0 31 167 271 407 1.46e-20 89.4
Msa0963190 AT1G55150.2 43.860 114 63 1 24 136 359 472 1.47e-20 89.7
Msa0963190 AT5G14610.6 40.909 110 60 2 29 136 402 508 1.50e-20 90.1
Msa0963190 AT1G54270.1 32.847 137 92 0 31 167 276 412 1.51e-20 89.4
Msa0963190 AT5G14610.2 40.909 110 60 2 29 136 402 508 1.63e-20 89.7
Msa0963190 AT3G16840.1 35.537 121 78 0 21 141 490 610 1.97e-20 89.7
Msa0963190 AT3G16840.2 35.537 121 78 0 21 141 491 611 2.09e-20 89.7
Msa0963190 AT5G14610.1 40.909 110 60 2 29 136 470 576 2.66e-20 89.4
Msa0963190 AT1G77030.1 30.667 150 102 1 24 171 260 409 3.52e-20 89.0
Msa0963190 AT4G33370.1 36.296 135 77 3 12 143 330 458 4.38e-20 88.6
Msa0963190 AT1G72730.1 31.387 137 94 0 31 167 278 414 4.51e-20 87.8
Msa0963190 AT5G63120.2 37.705 122 76 0 31 152 408 529 9.97e-20 87.4
Msa0963190 AT2G40700.1 41.905 105 60 1 56 160 373 476 2.48e-19 86.3
Msa0963190 AT1G20920.4 32.258 124 82 1 37 160 780 901 5.59e-19 85.5
Msa0963190 AT1G20920.6 32.258 124 82 1 37 160 780 901 5.59e-19 85.5
Msa0963190 AT1G20920.3 32.258 124 82 1 37 160 780 901 5.59e-19 85.5
Msa0963190 AT1G20920.7 32.258 124 82 1 37 160 780 901 5.59e-19 85.5
Msa0963190 AT1G20920.5 32.258 124 82 1 37 160 780 901 5.59e-19 85.5
Msa0963190 AT1G20920.1 32.258 124 82 1 37 160 780 901 5.59e-19 85.5
Msa0963190 AT1G20920.2 31.250 128 86 1 37 164 442 567 1.35e-18 84.3
Msa0963190 AT3G13920.5 35.780 109 70 0 31 139 280 388 3.15e-18 82.8
Msa0963190 AT3G13920.2 35.780 109 70 0 31 139 276 384 3.73e-18 82.4
Msa0963190 AT3G09620.1 40.698 86 49 1 75 160 656 739 5.56e-18 82.4
Msa0963190 AT3G09620.2 40.698 86 49 1 75 160 657 740 5.67e-18 82.4
Msa0963190 AT5G11170.2 36.641 131 69 2 37 158 209 334 5.73e-18 81.6
Msa0963190 AT5G11200.2 36.641 131 69 2 37 158 351 476 9.14e-18 81.6
Msa0963190 AT5G11170.1 36.641 131 69 2 37 158 292 417 9.28e-18 81.6
Msa0963190 AT5G11200.1 36.641 131 69 2 37 158 292 417 9.28e-18 81.6
Msa0963190 AT2G47330.1 46.591 88 46 1 58 144 498 585 1.07e-17 81.6
Msa0963190 AT5G11200.3 36.641 131 69 2 37 158 333 458 1.43e-17 81.3
Msa0963190 AT3G09720.2 31.200 125 86 0 37 161 384 508 4.50e-17 79.7
Msa0963190 AT3G09720.1 31.200 125 86 0 37 161 384 508 4.50e-17 79.7
Msa0963190 AT5G08610.1 32.308 130 88 0 37 166 644 773 1.16e-16 78.6
Msa0963190 AT5G08620.1 30.935 139 96 0 28 166 333 471 6.37e-16 76.3
Msa0963190 AT1G28180.1 38.095 105 64 1 35 138 219 323 2.16e-15 74.3
Msa0963190 AT1G12770.2 31.959 97 66 0 57 153 431 527 2.50e-15 74.7
Msa0963190 AT1G12770.1 31.959 97 66 0 57 153 431 527 2.50e-15 74.7
Msa0963190 AT5G63630.2 33.077 130 87 0 37 166 510 639 1.10e-14 72.8
Msa0963190 AT1G63250.1 30.882 136 90 1 26 157 576 711 1.23e-14 72.8
Msa0963190 AT2G07750.1 32.231 121 82 0 37 157 638 758 1.43e-14 72.8
Msa0963190 AT5G54910.1 36.170 141 82 5 20 157 304 439 1.75e-14 72.4
Msa0963190 AT5G63630.1 33.077 130 87 0 37 166 316 445 2.38e-14 71.6
Msa0963190 AT1G59990.1 33.654 104 68 1 36 139 427 529 6.15e-14 70.5
Msa0963190 AT1G59990.2 33.654 104 68 1 36 139 427 529 7.87e-14 70.5
Msa0963190 AT3G06980.1 33.043 115 68 2 24 129 626 740 9.47e-14 70.1
Msa0963190 AT5G62190.1 31.973 147 82 4 19 158 343 478 2.68e-13 68.9
Msa0963190 AT3G02065.1 37.000 100 58 1 45 139 228 327 4.41e-13 67.8
Msa0963190 AT3G53110.1 29.286 140 89 3 36 165 343 482 7.57e-13 67.4
Msa0963190 AT3G02065.3 37.000 100 58 1 45 139 365 464 1.09e-12 67.0
Msa0963190 AT3G02065.2 37.000 100 58 1 45 139 365 464 1.09e-12 67.0

Find 74 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAGTCAAATTATTTATT+TGG 0.186018 6_3:+87611550 Msa0963190:three_prime_UTR
CAAATTATTTATTTGGTTAT+AGG 0.188234 6_3:+87611557 Msa0963190:three_prime_UTR
TGACTCATATGACCATTAAT+TGG 0.210193 6_3:-87609543 None:intergenic
GATATAAATATGATATTCTT+TGG 0.237058 6_3:+87609188 Msa0963190:exon
CTGCTCGTGCAGGGCGCTCT+GGG 0.245952 6_3:+87610112 Msa0963190:CDS
TACCGTTGCTGCTAATCTTT+TGG 0.255708 6_3:-87610369 None:intergenic
TTAAAAGCCATCCCAATTAA+TGG 0.257390 6_3:+87609531 Msa0963190:CDS
TCTTCATTTGCAGGATATTC+TGG 0.259323 6_3:-87610311 None:intergenic
ATAGAAGGCCCATTTGTTAT+AGG 0.271178 6_3:+87609146 Msa0963190:five_prime_UTR
ACTGCTCGTGCAGGGCGCTC+TGG 0.277014 6_3:+87610111 Msa0963190:CDS
AAAACTTCCTCTTCATTTGC+AGG 0.284831 6_3:-87610320 None:intergenic
ATTTATTTGGTTATAGGAAT+AGG 0.319788 6_3:+87611563 Msa0963190:three_prime_UTR
AATCAAACAAATAAGGCAAT+AGG 0.342768 6_3:-87611645 None:intergenic
GGCTTCTTGCTTTGATTCTC+AGG 0.353350 6_3:+87609499 Msa0963190:CDS
GCCTTGAATAAGTTCAAGTC+TGG 0.364558 6_3:+87609761 Msa0963190:CDS
CAACTTACTTTGGAGTTTGT+AGG 0.371721 6_3:-87609869 None:intergenic
GTTCAGATAGAGAAGCTTAT+AGG 0.389977 6_3:+87610177 Msa0963190:CDS
ATCGTGTAATCAAACAAATA+AGG 0.405260 6_3:-87611652 None:intergenic
CCCAGACTTGAACTTATTCA+AGG 0.405930 6_3:-87609762 None:intergenic
TTCAAGGCTCCAAGTCGCTT+TGG 0.406010 6_3:-87609746 None:intergenic
AACCCAAATATTAAAATAAG+AGG 0.407355 6_3:-87611695 None:intergenic
GGGAAGAAACGGAGGGGCGA+AGG 0.411354 6_3:+87611347 Msa0963190:CDS
CGTACCACTCCAGCTCATAT+TGG 0.415138 6_3:-87610155 None:intergenic
TGTATACATTCTCACTGAAA+TGG 0.429004 6_3:+87609431 Msa0963190:CDS
ATCAAACAAATAAGGCAATA+GGG 0.429892 6_3:-87611644 None:intergenic
GACTCATATGACCATTAATT+GGG 0.432590 6_3:-87609542 None:intergenic
GCCCCTCCGTTTCTTCCCTC+CGG 0.434610 6_3:-87611342 None:intergenic
TTTGTTCGTGTAGAAAATGA+AGG 0.439293 6_3:+87611316 Msa0963190:intron
GGATATTCCAGCAGTAGATA+TGG 0.443401 6_3:+87609829 Msa0963190:CDS
GTTGGAAGGACTGCTCGTGC+AGG 0.445127 6_3:+87610102 Msa0963190:CDS
CCTTGTTAACCAATATGAGC+TGG 0.462373 6_3:+87610146 Msa0963190:CDS
CATAGGACAAATACGATAGA+AGG 0.462912 6_3:+87609131 Msa0963190:five_prime_UTR
ATATTGGTTAACAAGGGAAA+TGG 0.473550 6_3:-87610139 None:intergenic
GCTTTGATTCTCAGGAATCT+CGG 0.480443 6_3:+87609507 Msa0963190:CDS
TTAATCACCATATCTACTGC+TGG 0.487418 6_3:-87609836 None:intergenic
TTGTACTGACGTAGCTAGTA+GGG 0.489265 6_3:+87609802 Msa0963190:CDS
TTTGTACTGACGTAGCTAGT+AGG 0.492940 6_3:+87609801 Msa0963190:CDS
CGGAGGGGCGAAGGAGATGT+AGG 0.496627 6_3:+87611356 Msa0963190:CDS
AATTAATGGTCATATGAGTC+AGG 0.504543 6_3:+87609545 Msa0963190:CDS
TACATTCTCACTGAAATGGC+TGG 0.508310 6_3:+87609435 Msa0963190:CDS
CCAGCTCATATTGGTTAACA+AGG 0.509900 6_3:-87610146 None:intergenic
GATGATGTTGACAAATACTT+TGG 0.513823 6_3:+87611386 Msa0963190:CDS
TAAGTGAGAATCTCATAAGT+TGG 0.516504 6_3:+87609039 None:intergenic
TGAGAATCAAAGCAAGAAGC+CGG 0.521052 6_3:-87609497 None:intergenic
GTGTAGAAAATGAAGGAATC+CGG 0.525749 6_3:+87611323 Msa0963190:intron
CCTTGAATAAGTTCAAGTCT+GGG 0.532023 6_3:+87609762 Msa0963190:CDS
TTGGAAGGACTGCTCGTGCA+GGG 0.537138 6_3:+87610103 Msa0963190:CDS
AGACTGAAGACATACATTCA+AGG 0.546216 6_3:+87609105 Msa0963190:five_prime_UTR
CATATGACCATTAATTGGGA+TGG 0.551645 6_3:-87609538 None:intergenic
GGGCGAAGGAGATGTAGGAG+AGG 0.552917 6_3:+87611361 Msa0963190:CDS
CTCGGACATGTGATTCAACC+CGG 0.556610 6_3:+87609478 Msa0963190:CDS
ATCCGGAGGGAAGAAACGGA+GGG 0.560046 6_3:+87611340 Msa0963190:CDS
TGACGTAGCTAGTAGGGGAC+TGG 0.561132 6_3:+87609808 Msa0963190:CDS
TGCTCGTGCAGGGCGCTCTG+GGG 0.563790 6_3:+87610113 Msa0963190:CDS
ACATACATTCAAGGTTACAT+AGG 0.567754 6_3:+87609114 Msa0963190:five_prime_UTR
CAGGATTATATACATCGTGT+TGG 0.570019 6_3:+87610084 Msa0963190:intron
AGAATATCCTGCAAATGAAG+AGG 0.571881 6_3:+87610313 Msa0963190:CDS
ACCCAAATATTAAAATAAGA+GGG 0.575817 6_3:-87611694 None:intergenic
AGGAATCCGGAGGGAAGAAA+CGG 0.576357 6_3:+87611336 Msa0963190:CDS
ATTATATACATCGTGTTGGA+AGG 0.579974 6_3:+87610088 Msa0963190:CDS
GAGAATCAAAGCAAGAAGCC+GGG 0.583378 6_3:-87609496 None:intergenic
AGCCAAAAGATTAGCAGCAA+CGG 0.604889 6_3:+87610367 Msa0963190:CDS
TTAACCAATATGAGCTGGAG+TGG 0.605823 6_3:+87610151 Msa0963190:CDS
AATCCGGAGGGAAGAAACGG+AGG 0.606073 6_3:+87611339 Msa0963190:CDS
GTACATCAATGGTGTTCACT+CGG 0.612916 6_3:+87609460 Msa0963190:CDS
TTTCAGTGAGAATGTATACA+AGG 0.627924 6_3:-87609428 None:intergenic
TCCGGAGGGAAGAAACGGAG+GGG 0.632176 6_3:+87611341 Msa0963190:CDS
CTTGAATAAGTTCAAGTCTG+GGG 0.642746 6_3:+87609763 Msa0963190:CDS
TACTAGCTACGTCAGTACAA+AGG 0.652821 6_3:-87609799 None:intergenic
AATGGCTGGAAGTACATCAA+TGG 0.660650 6_3:+87609449 Msa0963190:CDS
CAGCTCATATTGGTTAACAA+GGG 0.664909 6_3:-87610145 None:intergenic
TGTACTGACGTAGCTAGTAG+GGG 0.666251 6_3:+87609803 Msa0963190:CDS
TAGAAAATGAAGGAATCCGG+AGG 0.670641 6_3:+87611326 Msa0963190:intron
AGAAAATGAAGGAATCCGGA+GGG 0.705779 6_3:+87611327 Msa0963190:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGCAAAATATATTTTTTT+TGG + chr6_3:87609235-87609254 Msa0963190:CDS 10.0%
!!! TATTTTAACCTATAACAAAT+GGG - chr6_3:87609157-87609176 None:intergenic 15.0%
!!! TTATTTTAACCTATAACAAA+TGG - chr6_3:87609158-87609177 None:intergenic 15.0%
!! GATATAAATATGATATTCTT+TGG + chr6_3:87609188-87609207 Msa0963190:exon 15.0%
!!! TAACAAAATTTCATTCATTT+TGG + chr6_3:87609322-87609341 Msa0963190:intron 15.0%
!!! AACAAAATTTCATTCATTTT+GGG + chr6_3:87609323-87609342 Msa0963190:intron 15.0%
!!! GTAATTTATTAGTATTTTCA+TGG + chr6_3:87609968-87609987 Msa0963190:intron 15.0%
!! TTAAATAGATAAAGTAAGTT+CGG + chr6_3:87610454-87610473 Msa0963190:intron 15.0%
!! AATGAAAACAAAAATTGAAT+GGG - chr6_3:87610525-87610544 None:intergenic 15.0%
!!! ATTCAATTTTTGTTTTCATT+GGG + chr6_3:87610525-87610544 Msa0963190:intron 15.0%
!!! ATGAACATAATATTTTTTGT+CGG - chr6_3:87611467-87611486 None:intergenic 15.0%
!! CAAATTATTTATTTGGTTAT+AGG + chr6_3:87611557-87611576 Msa0963190:three_prime_UTR 15.0%
!!! TTTTTTGGTAAGTAGTATAA+AGG + chr6_3:87609250-87609269 Msa0963190:intron 20.0%
!! TAAATAGATAAAGTAAGTTC+GGG + chr6_3:87610455-87610474 Msa0963190:intron 20.0%
!! CAATGAAAACAAAAATTGAA+TGG - chr6_3:87610526-87610545 None:intergenic 20.0%
!!! CATTCAATTTTTGTTTTCAT+TGG + chr6_3:87610524-87610543 Msa0963190:intron 20.0%
!! CTTGATTGTGATTATATTAT+CGG + chr6_3:87610786-87610805 Msa0963190:intron 20.0%
!! TTATCGGATTTAGTAAATTA+TGG + chr6_3:87610802-87610821 Msa0963190:intron 20.0%
!! ATAATCAACTTATGAATTGA+GGG + chr6_3:87610860-87610879 Msa0963190:intron 20.0%
!! TCTAAACTATCTTAGAATTT+GGG + chr6_3:87611126-87611145 Msa0963190:intron 20.0%
!! ATTGACAACAAAAAAAAACT+TGG - chr6_3:87611497-87611516 None:intergenic 20.0%
!! AGAGAGTCAAATTATTTATT+TGG + chr6_3:87611550-87611569 Msa0963190:three_prime_UTR 20.0%
!! ATTTATTTGGTTATAGGAAT+AGG + chr6_3:87611563-87611582 Msa0963190:three_prime_UTR 20.0%
!!! TTCCCTCTTATTTTAATATT+TGG + chr6_3:87611692-87611711 Msa0963190:three_prime_UTR 20.0%
!!! TCCCTCTTATTTTAATATTT+GGG + chr6_3:87611693-87611712 Msa0963190:three_prime_UTR 20.0%
!! ACCCAAATATTAAAATAAGA+GGG - chr6_3:87611697-87611716 None:intergenic 20.0%
!! AACCCAAATATTAAAATAAG+AGG - chr6_3:87611698-87611717 None:intergenic 20.0%
! TTGACAAACACAATAATCAA+AGG - chr6_3:87609381-87609400 None:intergenic 25.0%
!!! TAGAGATATTTTGTTGTCAT+TGG - chr6_3:87609708-87609727 None:intergenic 25.0%
!!! AGTATTTTCATGGCTATTTT+AGG + chr6_3:87609978-87609997 Msa0963190:intron 25.0%
!! AAATTCTTGTTGCATGATTT+TGG - chr6_3:87610029-87610048 None:intergenic 25.0%
!! ACAAGAATTTTTGTATTCAC+TGG + chr6_3:87610039-87610058 Msa0963190:intron 25.0%
!! AACAAATGCAAATGTTTTTC+AGG + chr6_3:87610278-87610297 Msa0963190:intron 25.0%
!!! TTGAGCTTTAGCTATATTTT+TGG + chr6_3:87610402-87610421 Msa0963190:intron 25.0%
!!! ATTTTTGTTTTCATTGGGTT+TGG + chr6_3:87610530-87610549 Msa0963190:intron 25.0%
!!! TTTTTGTTTTCATTGGGTTT+GGG + chr6_3:87610531-87610550 Msa0963190:intron 25.0%
! AAATGAATGAAAAGATGCAT+AGG + chr6_3:87610590-87610609 Msa0963190:intron 25.0%
! CTAATTAAAACCCTCATATA+TGG - chr6_3:87610638-87610657 None:intergenic 25.0%
!! CTCTATTTCTCAAAATAAAG+AGG - chr6_3:87610756-87610775 None:intergenic 25.0%
!!! CAATTCATAAGTTGATTATG+TGG - chr6_3:87610859-87610878 None:intergenic 25.0%
! CATAATCAACTTATGAATTG+AGG + chr6_3:87610859-87610878 Msa0963190:intron 25.0%
! TACATAATCGTTATAAGTGA+TGG - chr6_3:87610890-87610909 None:intergenic 25.0%
! ATCACTTATAACGATTATGT+AGG + chr6_3:87610889-87610908 Msa0963190:intron 25.0%
! GTCTAAACTATCTTAGAATT+TGG + chr6_3:87611125-87611144 Msa0963190:intron 25.0%
! CTAAGTTGTAAAGTGATATA+TGG - chr6_3:87611209-87611228 None:intergenic 25.0%
! CATATATCACTTTACAACTT+AGG + chr6_3:87611207-87611226 Msa0963190:intron 25.0%
!! TTATTTTCATATCTCCATGT+TGG - chr6_3:87611237-87611256 None:intergenic 25.0%
!! TGAGATTTTCAAAACAAGTA+TGG + chr6_3:87611527-87611546 Msa0963190:three_prime_UTR 25.0%
!! TAGGAATAGGTTTTCAAATT+AGG + chr6_3:87611576-87611595 Msa0963190:three_prime_UTR 25.0%
! ATCAAACAAATAAGGCAATA+GGG - chr6_3:87611647-87611666 None:intergenic 25.0%
! AATCAAACAAATAAGGCAAT+AGG - chr6_3:87611648-87611667 None:intergenic 25.0%
! ATCGTGTAATCAAACAAATA+AGG - chr6_3:87611655-87611674 None:intergenic 25.0%
! AGCAGCTGATATTTTCTAAA+GGG - chr6_3:87609073-87609092 None:intergenic 30.0%
! AAGCAGCTGATATTTTCTAA+AGG - chr6_3:87609074-87609093 None:intergenic 30.0%
ACATACATTCAAGGTTACAT+AGG + chr6_3:87609114-87609133 Msa0963190:five_prime_UTR 30.0%
GGTAAGTAGTATAAAGGAAA+TGG + chr6_3:87609256-87609275 Msa0963190:intron 30.0%
TTTCAGTGAGAATGTATACA+AGG - chr6_3:87609431-87609450 None:intergenic 30.0%
TGTATACATTCTCACTGAAA+TGG + chr6_3:87609431-87609450 Msa0963190:CDS 30.0%
TTAAAAGCCATCCCAATTAA+TGG + chr6_3:87609531-87609550 Msa0963190:CDS 30.0%
GACTCATATGACCATTAATT+GGG - chr6_3:87609545-87609564 None:intergenic 30.0%
TGACTCATATGACCATTAAT+TGG - chr6_3:87609546-87609565 None:intergenic 30.0%
AATTAATGGTCATATGAGTC+AGG + chr6_3:87609545-87609564 Msa0963190:CDS 30.0%
! CTACAAACACAAATAATGGA+GGG - chr6_3:87609680-87609699 None:intergenic 30.0%
ACACCTACAAACACAAATAA+TGG - chr6_3:87609684-87609703 None:intergenic 30.0%
! TCACTGTTAGCTTAATGTAA+AGG + chr6_3:87609943-87609962 Msa0963190:intron 30.0%
ATTATATACATCGTGTTGGA+AGG + chr6_3:87610088-87610107 Msa0963190:CDS 30.0%
! ATATTGGTTAACAAGGGAAA+TGG - chr6_3:87610142-87610161 None:intergenic 30.0%
AAAACAAAAATTGAATGGGC+GGG - chr6_3:87610521-87610540 None:intergenic 30.0%
GAAAACAAAAATTGAATGGG+CGG - chr6_3:87610522-87610541 None:intergenic 30.0%
TAAGATTCTCTCCATATATG+AGG + chr6_3:87610624-87610643 Msa0963190:intron 30.0%
AAGATTCTCTCCATATATGA+GGG + chr6_3:87610625-87610644 Msa0963190:intron 30.0%
! GTTTTTCATTCTCCAAATGA+AGG + chr6_3:87610730-87610749 Msa0963190:intron 30.0%
AAAATAAAGAGGCCTTCATT+TGG - chr6_3:87610745-87610764 None:intergenic 30.0%
TGGAGTTATAGAATTTGAGT+TGG + chr6_3:87610822-87610841 Msa0963190:intron 30.0%
! GGAGTTATAGAATTTGAGTT+GGG + chr6_3:87610823-87610842 Msa0963190:intron 30.0%
ACTCATTGTTAGACATCTTT+AGG + chr6_3:87611092-87611111 Msa0963190:intron 30.0%
TTTGTTCGTGTAGAAAATGA+AGG + chr6_3:87611316-87611335 Msa0963190:intron 30.0%
GATGATGTTGACAAATACTT+TGG + chr6_3:87611386-87611405 Msa0963190:CDS 30.0%
AGACTGAAGACATACATTCA+AGG + chr6_3:87609105-87609124 Msa0963190:five_prime_UTR 35.0%
CATAGGACAAATACGATAGA+AGG + chr6_3:87609131-87609150 Msa0963190:five_prime_UTR 35.0%
!! ATAGAAGGCCCATTTGTTAT+AGG + chr6_3:87609146-87609165 Msa0963190:five_prime_UTR 35.0%
GTTCTTACAAATTGCCTATG+TGG + chr6_3:87609291-87609310 Msa0963190:intron 35.0%
! TTGTTAGTTTCACTCCACAT+AGG - chr6_3:87609308-87609327 None:intergenic 35.0%
CATATGACCATTAATTGGGA+TGG - chr6_3:87609541-87609560 None:intergenic 35.0%
TATGAGTCAGGTATTTGTGT+TGG + chr6_3:87609557-87609576 Msa0963190:intron 35.0%
CCTACAAACACAAATAATGG+AGG - chr6_3:87609681-87609700 None:intergenic 35.0%
CCTCCATTATTTGTGTTTGT+AGG + chr6_3:87609678-87609697 Msa0963190:intron 35.0%
CCTTGAATAAGTTCAAGTCT+GGG + chr6_3:87609762-87609781 Msa0963190:CDS 35.0%
CTTGAATAAGTTCAAGTCTG+GGG + chr6_3:87609763-87609782 Msa0963190:CDS 35.0%
TTAATCACCATATCTACTGC+TGG - chr6_3:87609839-87609858 None:intergenic 35.0%
!! CAACTTACTTTGGAGTTTGT+AGG - chr6_3:87609872-87609891 None:intergenic 35.0%
TTGCACAACACAACTTACTT+TGG - chr6_3:87609882-87609901 None:intergenic 35.0%
CAGGATTATATACATCGTGT+TGG + chr6_3:87610084-87610103 Msa0963190:intron 35.0%
! CAGCTCATATTGGTTAACAA+GGG - chr6_3:87610148-87610167 None:intergenic 35.0%
GTTCAGATAGAGAAGCTTAT+AGG + chr6_3:87610177-87610196 Msa0963190:CDS 35.0%
TCTTCATTTGCAGGATATTC+TGG - chr6_3:87610314-87610333 None:intergenic 35.0%
AGAATATCCTGCAAATGAAG+AGG + chr6_3:87610313-87610332 Msa0963190:CDS 35.0%
AAAACTTCCTCTTCATTTGC+AGG - chr6_3:87610323-87610342 None:intergenic 35.0%
! TGAAGAGGAAGTTTTGCTTT+TGG + chr6_3:87610328-87610347 Msa0963190:CDS 35.0%
! AGTAAGTTCGGGAAATTTTG+TGG + chr6_3:87610466-87610485 Msa0963190:intron 35.0%
! GTAAGTTCGGGAAATTTTGT+GGG + chr6_3:87610467-87610486 Msa0963190:intron 35.0%
TATGGCTTGAATTGTGGTAT+GGG - chr6_3:87611191-87611210 None:intergenic 35.0%
ATATGGCTTGAATTGTGGTA+TGG - chr6_3:87611192-87611211 None:intergenic 35.0%
GTGATATATGGCTTGAATTG+TGG - chr6_3:87611197-87611216 None:intergenic 35.0%
ACAACTTAGGATTACCAACA+TGG + chr6_3:87611220-87611239 Msa0963190:intron 35.0%
GTGTAGAAAATGAAGGAATC+CGG + chr6_3:87611323-87611342 Msa0963190:intron 35.0%
CAATTGCTTGCTTCTTTCCT+AGG + chr6_3:87609398-87609417 Msa0963190:intron 40.0%
GTATACAAGGTAGCAATCCT+AGG - chr6_3:87609418-87609437 None:intergenic 40.0%
TACATTCTCACTGAAATGGC+TGG + chr6_3:87609435-87609454 Msa0963190:CDS 40.0%
! AATGGCTGGAAGTACATCAA+TGG + chr6_3:87609449-87609468 Msa0963190:CDS 40.0%
GTACATCAATGGTGTTCACT+CGG + chr6_3:87609460-87609479 Msa0963190:CDS 40.0%
TGAGAATCAAAGCAAGAAGC+CGG - chr6_3:87609500-87609519 None:intergenic 40.0%
GCTTTGATTCTCAGGAATCT+CGG + chr6_3:87609507-87609526 Msa0963190:CDS 40.0%
! TTCCTTTTCTCTTTCCTTGC+TGG + chr6_3:87609615-87609634 Msa0963190:intron 40.0%
TTCCAGCAAGGAAAGAGAAA+AGG - chr6_3:87609620-87609639 None:intergenic 40.0%
GGAAGTCATGCTATTGTAGA+TGG + chr6_3:87609636-87609655 Msa0963190:intron 40.0%
! TTTTAACAGCCAAAGCGACT+TGG + chr6_3:87609737-87609756 Msa0963190:intron 40.0%
GCCTTGAATAAGTTCAAGTC+TGG + chr6_3:87609761-87609780 Msa0963190:CDS 40.0%
CCCAGACTTGAACTTATTCA+AGG - chr6_3:87609765-87609784 None:intergenic 40.0%
TACTAGCTACGTCAGTACAA+AGG - chr6_3:87609802-87609821 None:intergenic 40.0%
! TTTGTACTGACGTAGCTAGT+AGG + chr6_3:87609801-87609820 Msa0963190:CDS 40.0%
! TTGTACTGACGTAGCTAGTA+GGG + chr6_3:87609802-87609821 Msa0963190:CDS 40.0%
GGATATTCCAGCAGTAGATA+TGG + chr6_3:87609829-87609848 Msa0963190:CDS 40.0%
CACGATGTATATAATCCTGC+AGG - chr6_3:87610083-87610102 None:intergenic 40.0%
! CCAGCTCATATTGGTTAACA+AGG - chr6_3:87610149-87610168 None:intergenic 40.0%
CCTTGTTAACCAATATGAGC+TGG + chr6_3:87610146-87610165 Msa0963190:CDS 40.0%
TTAACCAATATGAGCTGGAG+TGG + chr6_3:87610151-87610170 Msa0963190:CDS 40.0%
GATAGAGAAGCTTATAGGTG+AGG + chr6_3:87610182-87610201 Msa0963190:intron 40.0%
AGCCAAAAGATTAGCAGCAA+CGG + chr6_3:87610367-87610386 Msa0963190:CDS 40.0%
! TACCGTTGCTGCTAATCTTT+TGG - chr6_3:87610372-87610391 None:intergenic 40.0%
GTTGATTATGTGGCTGAGTT+AGG - chr6_3:87610849-87610868 None:intergenic 40.0%
TAGGCCATATTACTGTCCAA+TGG + chr6_3:87610908-87610927 Msa0963190:intron 40.0%
GTGTTATACGGCAGATTCTT+TGG - chr6_3:87610949-87610968 None:intergenic 40.0%
ATCAGCCATGTTTCTTCCAT+AGG - chr6_3:87610982-87611001 None:intergenic 40.0%
GATTTAGTGCTAGTAGCCAT+AGG - chr6_3:87611021-87611040 None:intergenic 40.0%
! ACGGTTGCATCAAAGCATTA+TGG - chr6_3:87611051-87611070 None:intergenic 40.0%
ATAATGCTTTGATGCAACCG+TGG + chr6_3:87611050-87611069 Msa0963190:intron 40.0%
ATGGCTTGAATTGTGGTATG+GGG - chr6_3:87611190-87611209 None:intergenic 40.0%
TAGAAAATGAAGGAATCCGG+AGG + chr6_3:87611326-87611345 Msa0963190:intron 40.0%
AGAAAATGAAGGAATCCGGA+GGG + chr6_3:87611327-87611346 Msa0963190:intron 40.0%
GAGAATCAAAGCAAGAAGCC+GGG - chr6_3:87609499-87609518 None:intergenic 45.0%
GGCTTCTTGCTTTGATTCTC+AGG + chr6_3:87609499-87609518 Msa0963190:CDS 45.0%
CAATAGCATGACTTCCAGCA+AGG - chr6_3:87609632-87609651 None:intergenic 45.0%
! TGTACTGACGTAGCTAGTAG+GGG + chr6_3:87609803-87609822 Msa0963190:CDS 45.0%
ATAATCCTGCAGGTCACACA+AGG - chr6_3:87610073-87610092 None:intergenic 45.0%
TCCTTAAAATGTCACCGCCA+AGG - chr6_3:87610219-87610238 None:intergenic 45.0%
!! TTGCTTTTGGAAGAGCGTGT+TGG + chr6_3:87610341-87610360 Msa0963190:CDS 45.0%
GCCATATTACTGTCCAATGG+CGG + chr6_3:87610911-87610930 Msa0963190:intron 45.0%
TCCGCCATTGGACAGTAATA+TGG - chr6_3:87610915-87610934 None:intergenic 45.0%
!! ATTACTGTCCAATGGCGGAT+AGG + chr6_3:87610916-87610935 Msa0963190:intron 45.0%
!! TTACTGTCCAATGGCGGATA+GGG + chr6_3:87610917-87610936 Msa0963190:intron 45.0%
ATACGGCAGATTCTTTGGCT+TGG - chr6_3:87610944-87610963 None:intergenic 45.0%
TGCCGTATAACACGATGTTG+CGG + chr6_3:87610956-87610975 Msa0963190:intron 45.0%
ATAGAAGCTGTTGCAGCCTA+TGG + chr6_3:87611002-87611021 Msa0963190:intron 45.0%
ACTGTTGCAACTTTCTGCCA+CGG - chr6_3:87611070-87611089 None:intergenic 45.0%
CTCGGACATGTGATTCAACC+CGG + chr6_3:87609478-87609497 Msa0963190:CDS 50.0%
TTCAAGGCTCCAAGTCGCTT+TGG - chr6_3:87609749-87609768 None:intergenic 50.0%
CGTACCACTCCAGCTCATAT+TGG - chr6_3:87610158-87610177 None:intergenic 50.0%
! GTGAGGAGCATATTCTGCCT+TGG + chr6_3:87610199-87610218 Msa0963190:intron 50.0%
! AGGAGCATATTCTGCCTTGG+CGG + chr6_3:87610202-87610221 Msa0963190:intron 50.0%
! GCCTTGGCGGTGACATTTTA+AGG + chr6_3:87610215-87610234 Msa0963190:intron 50.0%
AATGGGCGGGCAAGTTACAA+GGG - chr6_3:87610508-87610527 None:intergenic 50.0%
!! TACTGTCCAATGGCGGATAG+GGG + chr6_3:87610918-87610937 Msa0963190:intron 50.0%
GGCCGCAACATCGTGTTATA+CGG - chr6_3:87610961-87610980 None:intergenic 50.0%
TAACACGATGTTGCGGCCTA+TGG + chr6_3:87610963-87610982 Msa0963190:intron 50.0%
TGCGGCCTATGGAAGAAACA+TGG + chr6_3:87610974-87610993 Msa0963190:intron 50.0%
TTCAACCAGCTCATTGCGTG+AGG + chr6_3:87611160-87611179 Msa0963190:intron 50.0%
TCAACCAGCTCATTGCGTGA+GGG + chr6_3:87611161-87611180 Msa0963190:intron 50.0%
AGGAATCCGGAGGGAAGAAA+CGG + chr6_3:87611336-87611355 Msa0963190:CDS 50.0%
TGACGTAGCTAGTAGGGGAC+TGG + chr6_3:87609808-87609827 Msa0963190:CDS 55.0%
TTGGAAGGACTGCTCGTGCA+GGG + chr6_3:87610103-87610122 Msa0963190:CDS 55.0%
GAATGGGCGGGCAAGTTACA+AGG - chr6_3:87610509-87610528 None:intergenic 55.0%
AATCCGGAGGGAAGAAACGG+AGG + chr6_3:87611339-87611358 Msa0963190:CDS 55.0%
ATCCGGAGGGAAGAAACGGA+GGG + chr6_3:87611340-87611359 Msa0963190:CDS 55.0%
CCTGCAGGTCACACAAGGTC+AGG - chr6_3:87610068-87610087 None:intergenic 60.0%
CCTGACCTTGTGTGACCTGC+AGG + chr6_3:87610065-87610084 Msa0963190:intron 60.0%
GTTGGAAGGACTGCTCGTGC+AGG + chr6_3:87610102-87610121 Msa0963190:CDS 60.0%
GCAACCCTCACGCAATGAGC+TGG - chr6_3:87611168-87611187 None:intergenic 60.0%
TCCGGAGGGAAGAAACGGAG+GGG + chr6_3:87611341-87611360 Msa0963190:CDS 60.0%
GGGCGAAGGAGATGTAGGAG+AGG + chr6_3:87611361-87611380 Msa0963190:CDS 60.0%
GCTTGGCCCCTATCCGCCAT+TGG - chr6_3:87610927-87610946 None:intergenic 65.0%
GCCCCTCCGTTTCTTCCCTC+CGG - chr6_3:87611345-87611364 None:intergenic 65.0%
GGGAAGAAACGGAGGGGCGA+AGG + chr6_3:87611347-87611366 Msa0963190:CDS 65.0%
CGGAGGGGCGAAGGAGATGT+AGG + chr6_3:87611356-87611375 Msa0963190:CDS 65.0%
! ACTGCTCGTGCAGGGCGCTC+TGG + chr6_3:87610111-87610130 Msa0963190:CDS 70.0%
! CTGCTCGTGCAGGGCGCTCT+GGG + chr6_3:87610112-87610131 Msa0963190:CDS 70.0%
! TGCTCGTGCAGGGCGCTCTG+GGG + chr6_3:87610113-87610132 Msa0963190:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 87609052 87611764 87609052 ID=Msa0963190;Name=Msa0963190
chr6_3 mRNA 87609052 87611764 87609052 ID=Msa0963190-mRNA-1;Parent=Msa0963190;Name=Msa0963190-mRNA-1;_AED=0.08;_eAED=0.08;_QI=145|1|1|1|0.8|0.66|6|316|221
chr6_3 exon 87609052 87609256 87609052 ID=Msa0963190-mRNA-1:exon:15874;Parent=Msa0963190-mRNA-1
chr6_3 exon 87609420 87609566 87609420 ID=Msa0963190-mRNA-1:exon:15875;Parent=Msa0963190-mRNA-1
chr6_3 exon 87609746 87609883 87609746 ID=Msa0963190-mRNA-1:exon:15876;Parent=Msa0963190-mRNA-1
chr6_3 exon 87610087 87610198 87610087 ID=Msa0963190-mRNA-1:exon:15877;Parent=Msa0963190-mRNA-1
chr6_3 exon 87610300 87610388 87610300 ID=Msa0963190-mRNA-1:exon:15878;Parent=Msa0963190-mRNA-1
chr6_3 exon 87611329 87611764 87611329 ID=Msa0963190-mRNA-1:exon:15879;Parent=Msa0963190-mRNA-1
chr6_3 five_prime_UTR 87609052 87609196 87609052 ID=Msa0963190-mRNA-1:five_prime_utr;Parent=Msa0963190-mRNA-1
chr6_3 CDS 87609197 87609256 87609197 ID=Msa0963190-mRNA-1:cds;Parent=Msa0963190-mRNA-1
chr6_3 CDS 87609420 87609566 87609420 ID=Msa0963190-mRNA-1:cds;Parent=Msa0963190-mRNA-1
chr6_3 CDS 87609746 87609883 87609746 ID=Msa0963190-mRNA-1:cds;Parent=Msa0963190-mRNA-1
chr6_3 CDS 87610087 87610198 87610087 ID=Msa0963190-mRNA-1:cds;Parent=Msa0963190-mRNA-1
chr6_3 CDS 87610300 87610388 87610300 ID=Msa0963190-mRNA-1:cds;Parent=Msa0963190-mRNA-1
chr6_3 CDS 87611329 87611448 87611329 ID=Msa0963190-mRNA-1:cds;Parent=Msa0963190-mRNA-1
chr6_3 three_prime_UTR 87611449 87611764 87611449 ID=Msa0963190-mRNA-1:three_prime_utr;Parent=Msa0963190-mRNA-1
Gene Sequence

>Msa0963190

ATGATATTCTTTGGAGAGTTTTTAAGAAAAGCATATATAAAGCAAAATATATTTTTTTTGGATTGCTACCTTGTATACATTCTCACTGAAATGGCTGGAAGTACATCAATGGTGTTCACTCGGACATGTGATTCAACCCGGCTTCTTGCTTTGATTCTCAGGAATCTCGGTTTAAAAGCCATCCCAATTAATGGTCATATGAGTCAGCCAAAGCGACTTGGAGCCTTGAATAAGTTCAAGTCTGGGGATTGCAATATTCTCCTTTGTACTGACGTAGCTAGTAGGGGACTGGATATTCCAGCAGTAGATATGGTGATTAACTATGATATTCCTACAAACTCCAAAGATTATATACATCGTGTTGGAAGGACTGCTCGTGCAGGGCGCTCTGGGGTTGCCATTTCCCTTGTTAACCAATATGAGCTGGAGTGGTACGTTCAGATAGAGAAGCTTATAGGCAAGAAGCTACCAGAATATCCTGCAAATGAAGAGGAAGTTTTGCTTTTGGAAGAGCGTGTTGGTGAAGCCAAAAGATTAGCAGCAACGAAAATGAAGGAATCCGGAGGGAAGAAACGGAGGGGCGAAGGAGATGTAGGAGAGGATGATGATGTTGACAAATACTTTGGTCTGAAAGACAGAAAATCGTCTAAGAAGTTTAGAAGATAA
Protein sequence

>Msa0963190

MIFFGEFLRKAYIKQNIFFLDCYLVYILTEMAGSTSMVFTRTCDSTRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNILLCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYVQIEKLIGKKLPEYPANEEEVLLLEERVGEAKRLAATKMKESGGKKRRGEGDVGEDDDVDKYFGLKDRKSSKKFRR*