Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649820 | XP_003607652.1 | 96.639 | 357 | 11 | 1 | 1 | 356 | 1 | 357 | 0.0 | 695 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649820 | sp|Q9C6I6|ETFA_ARATH | 68.595 | 363 | 104 | 3 | 3 | 356 | 2 | 363 | 5.38e-176 | 496 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0643520 | Msa0649820 | 0.820971 | 5.174158e-53 | -8.615850e-47 |
| Msa0649820 | Msa0683000 | 0.801532 | 8.612261e-49 | -8.615850e-47 |
| Msa0649820 | Msa1219790 | 0.823236 | 1.543701e-53 | -8.615850e-47 |
| Msa0649820 | Msa1267080 | 0.815399 | 9.431679e-52 | -8.615850e-47 |
| Msa0649820 | Msa1370080 | 0.805233 | 1.473502e-49 | -8.615850e-47 |
| Msa0649820 | Msa1401550 | 0.831749 | 1.399126e-55 | -8.615850e-47 |
| Msa0268070 | Msa0649820 | 0.821155 | 4.693400e-53 | -8.615850e-47 |
| Msa0602180 | Msa0649820 | 0.833226 | 6.021272e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649820 | MtrunA17_Chr4g0041791 | 96.639 | 357 | 11 | 1 | 1 | 356 | 1 | 357 | 0.0 | 695 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649820 | AT1G50940.1 | 68.595 | 363 | 104 | 3 | 3 | 356 | 2 | 363 | 5.47e-177 | 496 |
Find 101 sgRNAs with CRISPR-Local
Find 348 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCAGCTTCAAATTCTTT+TGG | 0.232309 | 4_3:-56567717 | Msa0649820:CDS |
| TGCTGATGCTCCTATATTTC+AGG | 0.232369 | 4_3:-56564410 | Msa0649820:intron |
| ACCAGCAGCACCAAGTTTCT+TGG | 0.273868 | 4_3:+56565805 | None:intergenic |
| CCCGAACTCTATATGGCTTT+TGG | 0.284745 | 4_3:-56564502 | Msa0649820:CDS |
| TCTCCAGTTACTGATGTTAC+AGG | 0.286599 | 4_3:-56567654 | Msa0649820:CDS |
| GAACTACAGGTTGCTGATTA+TGG | 0.290961 | 4_3:-56564283 | Msa0649820:intron |
| TGTTGCTCCCGAACTCTATA+TGG | 0.302664 | 4_3:-56564509 | Msa0649820:CDS |
| AGTGCATTTCCTGCATATAT+TGG | 0.304541 | 4_3:+56566361 | None:intergenic |
| TATATGAAGGTTGGACAAAC+TGG | 0.344212 | 4_3:-56564538 | Msa0649820:intron |
| GTCCTTGTATATTAACAATT+AGG | 0.357874 | 4_3:-56566312 | Msa0649820:CDS |
| GTTGCTTAATGTTTCATCCT+TGG | 0.361639 | 4_3:-56564162 | Msa0649820:three_prime_UTR |
| TCTGTTTCTCTTCTCTTAGC+TGG | 0.364516 | 4_3:-56568700 | Msa0649820:CDS |
| AAAGCAATTACCTGAAATAT+AGG | 0.367457 | 4_3:+56564400 | None:intergenic |
| CTTTGTACAGTCCGATATAC+TGG | 0.386395 | 4_3:-56566340 | Msa0649820:CDS |
| GAAACAGAAGAGTCATTGTT+AGG | 0.386575 | 4_3:+56568715 | None:intergenic |
| TCTCTTCTCTTAGCTGGCTC+TGG | 0.387863 | 4_3:-56568694 | Msa0649820:CDS |
| CATTGTATTGTATTTCTCTT+CGG | 0.388773 | 4_3:+56569001 | None:intergenic |
| TCAACAGGCTTCTGAGAAAC+AGG | 0.395915 | 4_3:+56566277 | None:intergenic |
| ACCAAAAGCCATATAGAGTT+CGG | 0.403600 | 4_3:+56564501 | None:intergenic |
| TGTATTTCTCTTCGGAATGC+TGG | 0.410010 | 4_3:+56569009 | None:intergenic |
| CTGGGCTAAACTAGTCCATT+TGG | 0.420011 | 4_3:-56567769 | Msa0649820:CDS |
| TGAAAGATCAACCTGAGATA+TGG | 0.422186 | 4_3:+56566234 | None:intergenic |
| GGTATATATCTCAAACTTCT+CGG | 0.422410 | 4_3:-56565925 | Msa0649820:CDS |
| CTCCCACCCTTCCATCTCTC+AGG | 0.427763 | 4_3:-56568635 | Msa0649820:intron |
| ATTCCTGTAACATCAGTAAC+TGG | 0.428271 | 4_3:+56567651 | None:intergenic |
| GCCAAGAAACTTGGTGCTGC+TGG | 0.432419 | 4_3:-56565806 | Msa0649820:intron |
| GGAGAGAGAAGGAGGTTTGA+TGG | 0.437229 | 4_3:+56568762 | None:intergenic |
| CGAGGTGCTACCAGAGTTGT+TGG | 0.446069 | 4_3:-56564242 | Msa0649820:CDS |
| CCAAAAGCCATATAGAGTTC+GGG | 0.449038 | 4_3:+56564502 | None:intergenic |
| CACCTCTTTGCTGAACCAAA+TGG | 0.450358 | 4_3:+56567754 | None:intergenic |
| TAGCCCAGGGTTCTGCCAAT+GGG | 0.450731 | 4_3:+56567784 | None:intergenic |
| AAGGACTGGCACCAGTATAT+CGG | 0.456890 | 4_3:+56566329 | None:intergenic |
| TATTATTACGTTTCGAGAAG+TGG | 0.458296 | 4_3:+56568914 | None:intergenic |
| GTTCACAGCAACAATGACTT+TGG | 0.458974 | 4_3:+56564438 | None:intergenic |
| AGGAAAATGAAGTCTATTAG+TGG | 0.461919 | 4_3:-56564097 | Msa0649820:three_prime_UTR |
| CTCTTCGGAATGCTGGTTGG+TGG | 0.463609 | 4_3:+56569016 | None:intergenic |
| GTTGCTGATTATGGACTAGT+AGG | 0.465111 | 4_3:-56564274 | Msa0649820:CDS |
| ATCCGTGCATTCCCAAGGTC+TGG | 0.468558 | 4_3:+56565890 | None:intergenic |
| GGCAGCCGCCTACTCGCAAA+TGG | 0.475148 | 4_3:-56569162 | None:intergenic |
| TTAGCCCAGGGTTCTGCCAA+TGG | 0.475265 | 4_3:+56567783 | None:intergenic |
| TACGTTTCGAGAAGTGGAAA+AGG | 0.475864 | 4_3:+56568920 | None:intergenic |
| TGATAAGGCTTCCATATCTC+AGG | 0.477728 | 4_3:-56566245 | Msa0649820:CDS |
| ACTCGTGCTGCTGTTGATGC+AGG | 0.488675 | 4_3:-56565337 | Msa0649820:CDS |
| GTATATATCTCAAACTTCTC+GGG | 0.489381 | 4_3:-56565924 | Msa0649820:CDS |
| TGACAGATCTGGACAAGTCT+AGG | 0.502015 | 4_3:-56565946 | Msa0649820:intron |
| TGTTGACTCAAAATCTGATA+AGG | 0.502932 | 4_3:-56566260 | Msa0649820:CDS |
| GGAGCTATTCAACATATAGC+AGG | 0.502950 | 4_3:-56564472 | Msa0649820:CDS |
| TGAGTGAGTAACCTGAGAGA+TGG | 0.507897 | 4_3:+56568624 | None:intergenic |
| ATGATGAAGGACCAGACCTT+GGG | 0.508260 | 4_3:-56565901 | Msa0649820:CDS |
| ATTTGTTGCTAATGATCTCC+AGG | 0.509284 | 4_3:-56565314 | Msa0649820:intron |
| AATGCACGGATTGTAGTTAC+TGG | 0.510808 | 4_3:-56565878 | Msa0649820:CDS |
| CAAACTTCTCGGGATGATGA+AGG | 0.521219 | 4_3:-56565914 | Msa0649820:CDS |
| GATGATGAAGGACCAGACCT+TGG | 0.521865 | 4_3:-56565902 | Msa0649820:CDS |
| AGAACCCATTGGCAGAACCC+TGG | 0.524794 | 4_3:-56567788 | Msa0649820:CDS |
| GAACCCATTGGCAGAACCCT+GGG | 0.532115 | 4_3:-56567787 | Msa0649820:CDS |
| CAAATGGACTAGTTTAGCCC+AGG | 0.533498 | 4_3:+56567770 | None:intergenic |
| GAAAATCTAGCCAAGAAACT+TGG | 0.537062 | 4_3:-56565815 | Msa0649820:CDS |
| GCGTGGAGTGCGGAGAGAGA+AGG | 0.540459 | 4_3:+56568751 | None:intergenic |
| GTCATCGCGGAGCACGATAA+CGG | 0.542485 | 4_3:-56568787 | Msa0649820:CDS |
| GATCTTTCAACCTTTGACGA+AGG | 0.548642 | 4_3:-56566220 | Msa0649820:intron |
| AATTGTTAATATACAAGGAC+TGG | 0.548727 | 4_3:+56566315 | None:intergenic |
| TTTCTCTTCGGAATGCTGGT+TGG | 0.550559 | 4_3:+56569013 | None:intergenic |
| GACCTAATTGTTAATATACA+AGG | 0.553893 | 4_3:+56566310 | None:intergenic |
| TCATACAGGCCAATATATGC+AGG | 0.554146 | 4_3:-56566370 | Msa0649820:intron |
| GTCCATTTGGTTCAGCAAAG+AGG | 0.561354 | 4_3:-56567756 | Msa0649820:CDS |
| ATGCTGATTCAGTTTAAGCA+AGG | 0.565986 | 4_3:+56569044 | None:intergenic |
| TTCAACATATAGCAGGGATG+AGG | 0.567627 | 4_3:-56564465 | Msa0649820:CDS |
| GACCAGACCTTGGGAATGCA+CGG | 0.569448 | 4_3:-56565892 | Msa0649820:CDS |
| AACCTGAGAGATGGAAGGGT+GGG | 0.578721 | 4_3:+56568633 | None:intergenic |
| ATTGTGAAATTGTATTTCCA+AGG | 0.581089 | 4_3:+56564145 | None:intergenic |
| CTGAGAGATGGAAGGGTGGG+AGG | 0.582498 | 4_3:+56568636 | None:intergenic |
| GATAAACAGACCTTCGTCAA+AGG | 0.586100 | 4_3:+56566210 | None:intergenic |
| TTAGTGGAACATTATACTAC+CGG | 0.586275 | 4_3:-56564081 | Msa0649820:three_prime_UTR |
| TCAACATATAGCAGGGATGA+GGG | 0.589099 | 4_3:-56564464 | Msa0649820:CDS |
| TGGAGTGCGGAGAGAGAAGG+AGG | 0.590939 | 4_3:+56568754 | None:intergenic |
| ACACGTGGCGGCGTGGAGTG+CGG | 0.594993 | 4_3:+56568741 | None:intergenic |
| GAAGCAGCTTGATGAAGAGA+AGG | 0.597420 | 4_3:+56568670 | None:intergenic |
| AGATACATTCAAGAACCCAT+TGG | 0.600709 | 4_3:-56567799 | Msa0649820:CDS |
| GCTTGTGGTGTAGGTGCTCG+TGG | 0.604147 | 4_3:-56567829 | Msa0649820:intron |
| AAAGGATGGATGTAAGAAGA+AGG | 0.605037 | 4_3:+56568938 | None:intergenic |
| CTACAATCCGTGCATTCCCA+AGG | 0.606621 | 4_3:+56565885 | None:intergenic |
| TTTCGAGAAGTGGAAAAGGA+TGG | 0.607804 | 4_3:+56568924 | None:intergenic |
| CATTTGGTTCAGCAAAGAGG+TGG | 0.612054 | 4_3:-56567753 | Msa0649820:CDS |
| GAGTAACCTGAGAGATGGAA+GGG | 0.616601 | 4_3:+56568629 | None:intergenic |
| GTTTCTTAATTGCTCCTCTG+AGG | 0.618185 | 4_3:+56568964 | None:intergenic |
| GAGCTATTCAACATATAGCA+GGG | 0.627640 | 4_3:-56564471 | Msa0649820:CDS |
| TAGGAAGACACGTGGCGGCG+TGG | 0.629518 | 4_3:+56568734 | None:intergenic |
| AAATGGACTAGTTTAGCCCA+GGG | 0.633679 | 4_3:+56567771 | None:intergenic |
| CGAAGAGAAATACAATACAA+TGG | 0.634117 | 4_3:-56569000 | Msa0649820:exon |
| TAACCTGAGAGATGGAAGGG+TGG | 0.634315 | 4_3:+56568632 | None:intergenic |
| ACTAGTAGGAGATTTATTCG+AGG | 0.644611 | 4_3:-56564260 | Msa0649820:CDS |
| ATAATGCAAAATGAGCCTAC+CGG | 0.658046 | 4_3:+56564062 | None:intergenic |
| TGAGTAACCTGAGAGATGGA+AGG | 0.658729 | 4_3:+56568628 | None:intergenic |
| TCTAAAAGAGCAGCAGCACG+CGG | 0.669095 | 4_3:+56567681 | None:intergenic |
| GCACGGATTGTAGTTACTGG+TGG | 0.675072 | 4_3:-56565875 | Msa0649820:CDS |
| TGGAACATTATACTACCGGT+AGG | 0.680103 | 4_3:-56564077 | Msa0649820:three_prime_UTR |
| GGGTAGCACTCTTGTCATCG+CGG | 0.684508 | 4_3:-56568800 | Msa0649820:CDS |
| GCGACTCGCATGATCCTCAG+AGG | 0.704824 | 4_3:-56568978 | Msa0649820:CDS |
| GTCATTGTTAGGAAGACACG+TGG | 0.713047 | 4_3:+56568726 | None:intergenic |
| ATTGTTAGGAAGACACGTGG+CGG | 0.756297 | 4_3:+56568729 | None:intergenic |
| TGTGGTGTAGGTGCTCGTGG+CGG | 0.764994 | 4_3:-56567826 | Msa0649820:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCAGTATTATTTTAATTTA+TGG | + | chr4_3:56565101-56565120 | None:intergenic | 10.0% |
| !!! | GTTTTTTAATTTTATTGTTT+TGG | - | chr4_3:56566684-56566703 | Msa0649820:intron | 10.0% |
| !!! | TATTTAATTTTGAATTTGAA+AGG | + | chr4_3:56567914-56567933 | None:intergenic | 10.0% |
| !! | ATAATTAAAAACTTAAAAGT+CGG | - | chr4_3:56568125-56568144 | Msa0649820:intron | 10.0% |
| !! | TTTAGTTACTTGATTTAAAT+TGG | - | chr4_3:56564665-56564684 | Msa0649820:intron | 15.0% |
| !!! | AGTTATTATTCTGTTTTTAT+TGG | - | chr4_3:56565170-56565189 | Msa0649820:intron | 15.0% |
| !! | TATTTATTAAGATTTAAGTG+TGG | + | chr4_3:56566439-56566458 | None:intergenic | 15.0% |
| !!! | TTTATATTTTGATTTCATAC+AGG | - | chr4_3:56566808-56566827 | Msa0649820:intron | 15.0% |
| !! | AAAAAGAAATAATAAATCTC+TGG | + | chr4_3:56567454-56567473 | None:intergenic | 15.0% |
| !!! | ATTTATTATTTCTTTTTTGC+TGG | - | chr4_3:56567457-56567476 | Msa0649820:intron | 15.0% |
| !! | TTCATATACAATTTGAAAAT+AGG | + | chr4_3:56568642-56568661 | None:intergenic | 15.0% |
| !!! | TATTTTCAAATTGTATATGA+AGG | - | chr4_3:56568641-56568660 | Msa0649820:CDS | 15.0% |
| !! | ACATACGTATTATAGATTTA+TGG | - | chr4_3:56565885-56565904 | Msa0649820:CDS | 20.0% |
| !! | ATATACATGAACCAAATTTA+CGG | + | chr4_3:56566397-56566416 | None:intergenic | 20.0% |
| !! | AACAAATAAACAAGTTACAA+GGG | + | chr4_3:56566546-56566565 | None:intergenic | 20.0% |
| !! | TATTTATAGAGCTAAAAAGT+CGG | - | chr4_3:56566636-56566655 | Msa0649820:intron | 20.0% |
| !! | AACATTTATATTTCATAAGC+AGG | + | chr4_3:56566764-56566783 | None:intergenic | 20.0% |
| !! | TGCTTATGAAATATAAATGT+TGG | - | chr4_3:56566763-56566782 | Msa0649820:intron | 20.0% |
| !! | GCTTATGAAATATAAATGTT+GGG | - | chr4_3:56566764-56566783 | Msa0649820:intron | 20.0% |
| !!! | TACACAATTTTCTATGTAAA+AGG | + | chr4_3:56567596-56567615 | None:intergenic | 20.0% |
| !! | ACAAAACAAACAATATGATA+CGG | + | chr4_3:56567784-56567803 | None:intergenic | 20.0% |
| !!! | TTTTAGCAAGTTTTGTTATT+TGG | - | chr4_3:56568319-56568338 | Msa0649820:intron | 20.0% |
| ! | TGAGAACAAAAAAGATGATA+GGG | + | chr4_3:56564104-56564123 | None:intergenic | 25.0% |
| ! | ATGAGAACAAAAAAGATGAT+AGG | + | chr4_3:56564105-56564124 | None:intergenic | 25.0% |
| ! | CATTGTATTGTATTTCTCTT+CGG | + | chr4_3:56564194-56564213 | None:intergenic | 25.0% |
| ! | TATAAGTAAGTAACTGAAAG+AGG | + | chr4_3:56564599-56564618 | None:intergenic | 25.0% |
| ! | TAAAATACCAAGTTTGAATC+TGG | - | chr4_3:56564767-56564786 | Msa0649820:intron | 25.0% |
| !!! | TATTGCTGATGTTGTTTTTT+TGG | - | chr4_3:56565133-56565152 | Msa0649820:intron | 25.0% |
| ! | GAACTTGAAATGATAAAAAG+AGG | - | chr4_3:56565235-56565254 | Msa0649820:intron | 25.0% |
| !! | AAGAAAATGTAAGTTGAGAA+AGG | - | chr4_3:56565260-56565279 | Msa0649820:intron | 25.0% |
| !! | AGAAAATGTAAGTTGAGAAA+GGG | - | chr4_3:56565261-56565280 | Msa0649820:intron | 25.0% |
| !! | CTGATTCTCATACTTTTATA+AGG | - | chr4_3:56565566-56565585 | Msa0649820:intron | 25.0% |
| ! | GCTTATCATACTAAAATTGT+GGG | + | chr4_3:56566083-56566102 | None:intergenic | 25.0% |
| ! | AGCTTATCATACTAAAATTG+TGG | + | chr4_3:56566084-56566103 | None:intergenic | 25.0% |
| ! | GAACAAATAAACAAGTTACA+AGG | + | chr4_3:56566547-56566566 | None:intergenic | 25.0% |
| ! | AATTGTTAATATACAAGGAC+TGG | + | chr4_3:56566880-56566899 | None:intergenic | 25.0% |
| ! | GTCCTTGTATATTAACAATT+AGG | - | chr4_3:56566880-56566899 | Msa0649820:intron | 25.0% |
| ! | GACCTAATTGTTAATATACA+AGG | + | chr4_3:56566885-56566904 | None:intergenic | 25.0% |
| !!! | TGCATTGACAATTTGTTTTT+GGG | - | chr4_3:56567014-56567033 | Msa0649820:intron | 25.0% |
| ! | CTATAGTCAACAGATAAATA+AGG | + | chr4_3:56567073-56567092 | None:intergenic | 25.0% |
| ! | CAAATCGATGTAAATAACTA+AGG | + | chr4_3:56567150-56567169 | None:intergenic | 25.0% |
| !!! | CTTTATTATTTTGACAGATC+TGG | - | chr4_3:56567235-56567254 | Msa0649820:intron | 25.0% |
| ! | ATGAACTGGAATTTAAATCA+GGG | + | chr4_3:56567497-56567516 | None:intergenic | 25.0% |
| ! | AATGAACTGGAATTTAAATC+AGG | + | chr4_3:56567498-56567517 | None:intergenic | 25.0% |
| ! | TTTAAATTCCAGTTCATTGA+TGG | - | chr4_3:56567500-56567519 | Msa0649820:intron | 25.0% |
| !!! | TCTTTTATCAAGTTGTAGTT+TGG | + | chr4_3:56567968-56567987 | None:intergenic | 25.0% |
| ! | AAAAACTTAAAAGTCGGAAA+TGG | - | chr4_3:56568131-56568150 | Msa0649820:intron | 25.0% |
| ! | GGAATAGATAGATAATTTAC+TGG | - | chr4_3:56568180-56568199 | Msa0649820:intron | 25.0% |
| !! | ATTTTCTGTCAAGTATAACA+TGG | - | chr4_3:56568263-56568282 | Msa0649820:intron | 25.0% |
| !!! | AAACTTGCTAAAAGAATGAA+AGG | + | chr4_3:56568312-56568331 | None:intergenic | 25.0% |
| ! | ATGATGTATGGATCTATATT+AGG | - | chr4_3:56568406-56568425 | Msa0649820:intron | 25.0% |
| ! | CAATTTGAAAATAGGAAACA+CGG | + | chr4_3:56568634-56568653 | None:intergenic | 25.0% |
| ! | TTCAAATTGTATATGAAGGT+TGG | - | chr4_3:56568645-56568664 | Msa0649820:CDS | 25.0% |
| ! | AAAGCAATTACCTGAAATAT+AGG | + | chr4_3:56568795-56568814 | None:intergenic | 25.0% |
| !!! | TATTTCAGGTAATTGCTTTT+TGG | - | chr4_3:56568796-56568815 | Msa0649820:CDS | 25.0% |
| !!! | CACACATTTTATTTTTTCTC+AGG | + | chr4_3:56568984-56569003 | None:intergenic | 25.0% |
| ! | ATTGTGAAATTGTATTTCCA+AGG | + | chr4_3:56569050-56569069 | None:intergenic | 25.0% |
| !! | ATTTTGCATTATTACTACAG+TGG | - | chr4_3:56569141-56569160 | Msa0649820:five_prime_UTR | 25.0% |
| CGAAGAGAAATACAATACAA+TGG | - | chr4_3:56564192-56564211 | Msa0649820:three_prime_UTR | 30.0% | |
| TATTATTACGTTTCGAGAAG+TGG | + | chr4_3:56564281-56564300 | None:intergenic | 30.0% | |
| AGTTACTTACTTATATGCTC+TGG | - | chr4_3:56564604-56564623 | Msa0649820:intron | 30.0% | |
| TAATAAGCCTAAGAATTGCA+TGG | + | chr4_3:56564632-56564651 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTGTGTGTGAATGC+AGG | + | chr4_3:56564712-56564731 | None:intergenic | 30.0% |
| ATCGTTCAATCAAGATCAAA+CGG | + | chr4_3:56564794-56564813 | None:intergenic | 30.0% | |
| CTTCACAAATTCACTCATTT+GGG | + | chr4_3:56564826-56564845 | None:intergenic | 30.0% | |
| TCTTCACAAATTCACTCATT+TGG | + | chr4_3:56564827-56564846 | None:intergenic | 30.0% | |
| TTTGTGAAGACATGATTGTA+AGG | - | chr4_3:56564837-56564856 | Msa0649820:intron | 30.0% | |
| TTGTGAAGACATGATTGTAA+GGG | - | chr4_3:56564838-56564857 | Msa0649820:intron | 30.0% | |
| !! | TTCGTTGATTTCTAATACTG+AGG | - | chr4_3:56564900-56564919 | Msa0649820:intron | 30.0% |
| AGGTTTATTAACCAAGCAAT+TGG | - | chr4_3:56564920-56564939 | Msa0649820:intron | 30.0% | |
| GGTTTATTAACCAAGCAATT+GGG | - | chr4_3:56564921-56564940 | Msa0649820:intron | 30.0% | |
| ! | GAAAATGTAAGTTGAGAAAG+GGG | - | chr4_3:56565262-56565281 | Msa0649820:intron | 30.0% |
| TTGGAAGGGAGATTTAAATT+TGG | - | chr4_3:56565312-56565331 | Msa0649820:intron | 30.0% | |
| TGGAAGGGAGATTTAAATTT+GGG | - | chr4_3:56565313-56565332 | Msa0649820:intron | 30.0% | |
| ! | ATTGCAGCTTCAAATTCTTT+TGG | - | chr4_3:56565475-56565494 | Msa0649820:intron | 30.0% |
| ! | TTGCAGCTTCAAATTCTTTT+GGG | - | chr4_3:56565476-56565495 | Msa0649820:intron | 30.0% |
| !!! | GCGTTAACTTTATTTTTGTG+AGG | - | chr4_3:56565590-56565609 | Msa0649820:intron | 30.0% |
| GAATAACAATACCAAACAGA+GGG | + | chr4_3:56565777-56565796 | None:intergenic | 30.0% | |
| AGAATAACAATACCAAACAG+AGG | + | chr4_3:56565778-56565797 | None:intergenic | 30.0% | |
| TAGCGATTAGGCTATATTTA+TGG | - | chr4_3:56565815-56565834 | Msa0649820:CDS | 30.0% | |
| CACTTGATCTGATATTAATC+TGG | - | chr4_3:56566181-56566200 | Msa0649820:intron | 30.0% | |
| TGATATTAATCTGGATTCTG+AGG | - | chr4_3:56566190-56566209 | Msa0649820:intron | 30.0% | |
| AAATGAAAAACCTGTAAACC+TGG | - | chr4_3:56566218-56566237 | Msa0649820:intron | 30.0% | |
| ACAACTCATGAGTTCAAAAT+CGG | + | chr4_3:56566340-56566359 | None:intergenic | 30.0% | |
| TAATACTATCCCATTAGCTA+TGG | + | chr4_3:56566587-56566606 | None:intergenic | 30.0% | |
| GAATAACTTTGCATGTGTTA+AGG | - | chr4_3:56566611-56566630 | Msa0649820:intron | 30.0% | |
| !! | TTATCAGATTTTGAGTCAAC+AGG | + | chr4_3:56566933-56566952 | None:intergenic | 30.0% |
| !! | TGTTGACTCAAAATCTGATA+AGG | - | chr4_3:56566932-56566951 | Msa0649820:intron | 30.0% |
| !! | GTGCATTGACAATTTGTTTT+TGG | - | chr4_3:56567013-56567032 | Msa0649820:intron | 30.0% |
| TTTGATGCTACAAAGATCAA+TGG | - | chr4_3:56567100-56567119 | Msa0649820:intron | 30.0% | |
| GGTATATATCTCAAACTTCT+CGG | - | chr4_3:56567267-56567286 | Msa0649820:intron | 30.0% | |
| GTATATATCTCAAACTTCTC+GGG | - | chr4_3:56567268-56567287 | Msa0649820:intron | 30.0% | |
| !!! | TTTTTTGCTGGATTCACAAT+AGG | - | chr4_3:56567469-56567488 | Msa0649820:intron | 30.0% |
| ! | ATGGCATGGAGAATATTTTA+AGG | - | chr4_3:56567519-56567538 | Msa0649820:intron | 30.0% |
| ! | AAGACAAAGTTTCTTTTCGT+GGG | - | chr4_3:56567650-56567669 | Msa0649820:CDS | 30.0% |
| TTGTGTGTGTATTGTTTCAT+GGG | + | chr4_3:56567938-56567957 | None:intergenic | 30.0% | |
| TTTGTGTGTGTATTGTTTCA+TGG | + | chr4_3:56567939-56567958 | None:intergenic | 30.0% | |
| TTGATAAAAGATGAATGACG+AGG | - | chr4_3:56567977-56567996 | Msa0649820:intron | 30.0% | |
| ACAATTAGCAGCATAATCAT+GGG | + | chr4_3:56568057-56568076 | None:intergenic | 30.0% | |
| TTACTGGTCAATTATCACTT+TGG | - | chr4_3:56568196-56568215 | Msa0649820:intron | 30.0% | |
| TACTGGTCAATTATCACTTT+GGG | - | chr4_3:56568197-56568216 | Msa0649820:intron | 30.0% | |
| TCAAATTAACCTCTAGCATA+AGG | + | chr4_3:56568435-56568454 | None:intergenic | 30.0% | |
| ! | GTTAATTTGATTCTTCAGCT+TGG | - | chr4_3:56568445-56568464 | Msa0649820:intron | 30.0% |
| !! | GTCAATTCCATTTTAGTACA+TGG | - | chr4_3:56568589-56568608 | Msa0649820:intron | 30.0% |
| TTGTTTACCTGAAAAAGTAG+AGG | - | chr4_3:56569075-56569094 | Msa0649820:five_prime_UTR | 30.0% | |
| !!! | TCATTTTCCTCTACTTTTTC+AGG | + | chr4_3:56569085-56569104 | None:intergenic | 30.0% |
| AGGAAAATGAAGTCTATTAG+TGG | - | chr4_3:56569095-56569114 | Msa0649820:five_prime_UTR | 30.0% | |
| TTAGTGGAACATTATACTAC+CGG | - | chr4_3:56569111-56569130 | Msa0649820:five_prime_UTR | 30.0% | |
| !! | ATGCTGATTCAGTTTAAGCA+AGG | + | chr4_3:56564151-56564170 | None:intergenic | 35.0% |
| AAAGGATGGATGTAAGAAGA+AGG | + | chr4_3:56564257-56564276 | None:intergenic | 35.0% | |
| AATTGGATCGATGTAGTGTA+GGG | - | chr4_3:56564372-56564391 | Msa0649820:intron | 35.0% | |
| GAAACAGAAGAGTCATTGTT+AGG | + | chr4_3:56564480-56564499 | None:intergenic | 35.0% | |
| TAAATTGGATTCAGTGCAGT+CGG | - | chr4_3:56564680-56564699 | Msa0649820:intron | 35.0% | |
| TGAGTGGAACAATTCTTTGT+CGG | - | chr4_3:56565005-56565024 | Msa0649820:intron | 35.0% | |
| ! | GCTCTTGATAATCTGGATTT+CGG | + | chr4_3:56565049-56565068 | None:intergenic | 35.0% |
| ! | AATTTATGGTGTTAACCCTC+TGG | + | chr4_3:56565087-56565106 | None:intergenic | 35.0% |
| GGAAGGGAGATTTAAATTTG+GGG | - | chr4_3:56565314-56565333 | Msa0649820:intron | 35.0% | |
| GAAGGGAGATTTAAATTTGG+GGG | - | chr4_3:56565315-56565334 | Msa0649820:CDS | 35.0% | |
| !! | GGGGTTTTGATAGTTTACTT+GGG | - | chr4_3:56565334-56565353 | Msa0649820:CDS | 35.0% |
| AGATACATTCAAGAACCCAT+TGG | - | chr4_3:56565393-56565412 | Msa0649820:intron | 35.0% | |
| ATTCCTGTAACATCAGTAAC+TGG | + | chr4_3:56565544-56565563 | None:intergenic | 35.0% | |
| TGTATTGCACAATTCAACAC+TGG | - | chr4_3:56565663-56565682 | Msa0649820:intron | 35.0% | |
| CACTATTACATCGTCATGAT+TGG | - | chr4_3:56565687-56565706 | Msa0649820:intron | 35.0% | |
| CTATCAACTGTTTAGCGATT+AGG | - | chr4_3:56565803-56565822 | Msa0649820:intron | 35.0% | |
| CGATTAGGCTATATTTATGG+AGG | - | chr4_3:56565818-56565837 | Msa0649820:CDS | 35.0% | |
| ATACTAAAATTGTGGGCAAG+TGG | + | chr4_3:56566076-56566095 | None:intergenic | 35.0% | |
| AATACCTACCCTAAGTTTGA+AGG | + | chr4_3:56566261-56566280 | None:intergenic | 35.0% | |
| AGGTCTTGATACAAAACATC+AGG | - | chr4_3:56566314-56566333 | Msa0649820:CDS | 35.0% | |
| GAAGTGATACACCGTAAATT+TGG | - | chr4_3:56566383-56566402 | Msa0649820:intron | 35.0% | |
| TGTGAAAGTCTAAACGGTTA+TGG | + | chr4_3:56566515-56566534 | None:intergenic | 35.0% | |
| AGCTATGGAGGTGAAATTAA+CGG | + | chr4_3:56566572-56566591 | None:intergenic | 35.0% | |
| AATTTCACCTCCATAGCTAA+TGG | - | chr4_3:56566574-56566593 | Msa0649820:intron | 35.0% | |
| ATTTCACCTCCATAGCTAAT+GGG | - | chr4_3:56566575-56566594 | Msa0649820:intron | 35.0% | |
| AAAAAGTCGGCTAACAAAGT+AGG | - | chr4_3:56566649-56566668 | Msa0649820:intron | 35.0% | |
| AAAAGTCGGCTAACAAAGTA+GGG | - | chr4_3:56566650-56566669 | Msa0649820:intron | 35.0% | |
| AGTGCATTTCCTGCATATAT+TGG | + | chr4_3:56566834-56566853 | None:intergenic | 35.0% | |
| TGAAAGATCAACCTGAGATA+TGG | + | chr4_3:56566961-56566980 | None:intergenic | 35.0% | |
| GGCAAATTGAAAACACAAGT+AGG | - | chr4_3:56567035-56567054 | Msa0649820:intron | 35.0% | |
| ! | TATCTGTTGACTATAGATCC+TGG | - | chr4_3:56567077-56567096 | Msa0649820:intron | 35.0% |
| ATCAATGGATCATCTGTATC+AGG | - | chr4_3:56567115-56567134 | Msa0649820:intron | 35.0% | |
| TCAATGGATCATCTGTATCA+GGG | - | chr4_3:56567116-56567135 | Msa0649820:intron | 35.0% | |
| TTCACATATCCAAGTCTGAA+GGG | + | chr4_3:56567185-56567204 | None:intergenic | 35.0% | |
| GATATGTGAACAATTGCAAG+TGG | - | chr4_3:56567195-56567214 | Msa0649820:intron | 35.0% | |
| GAAAATCTAGCCAAGAAACT+TGG | - | chr4_3:56567377-56567396 | Msa0649820:intron | 35.0% | |
| AAATGCTAACAAGTTCCCTT+AGG | - | chr4_3:56567543-56567562 | Msa0649820:intron | 35.0% | |
| AATGCTAACAAGTTCCCTTA+GGG | - | chr4_3:56567544-56567563 | Msa0649820:intron | 35.0% | |
| TTGCTTAAACAATGCCCTAA+GGG | + | chr4_3:56567561-56567580 | None:intergenic | 35.0% | |
| ATTGCTTAAACAATGCCCTA+AGG | + | chr4_3:56567562-56567581 | None:intergenic | 35.0% | |
| ! | CAAGACAAAGTTTCTTTTCG+TGG | - | chr4_3:56567649-56567668 | Msa0649820:CDS | 35.0% |
| TTCCTTAAACAATGCCCTTA+GGG | - | chr4_3:56567673-56567692 | Msa0649820:CDS | 35.0% | |
| AAACACGCTATCATGTGTTA+AGG | + | chr4_3:56567747-56567766 | None:intergenic | 35.0% | |
| ! | ATTTGTTGCTAATGATCTCC+AGG | - | chr4_3:56567878-56567897 | Msa0649820:intron | 35.0% |
| TTGAAAGGAAGTTAAGTACC+TGG | + | chr4_3:56567899-56567918 | None:intergenic | 35.0% | |
| TGTGTGTGTATTGTTTCATG+GGG | + | chr4_3:56567937-56567956 | None:intergenic | 35.0% | |
| GACAATTAGCAGCATAATCA+TGG | + | chr4_3:56568058-56568077 | None:intergenic | 35.0% | |
| AATGGAAAAACATCTGTGTG+TGG | - | chr4_3:56568149-56568168 | Msa0649820:intron | 35.0% | |
| TGCAATGGCATATCATTTGA+GGG | - | chr4_3:56568518-56568537 | Msa0649820:intron | 35.0% | |
| GTACTAAAATGGAATTGACG+TGG | + | chr4_3:56568588-56568607 | None:intergenic | 35.0% | |
| AACTAGGCCATGTACTAAAA+TGG | + | chr4_3:56568599-56568618 | None:intergenic | 35.0% | |
| ACGGATGTGAGAATAAAACT+AGG | + | chr4_3:56568615-56568634 | None:intergenic | 35.0% | |
| TATATGAAGGTTGGACAAAC+TGG | - | chr4_3:56568654-56568673 | Msa0649820:CDS | 35.0% | |
| ACCAAAAGCCATATAGAGTT+CGG | + | chr4_3:56568694-56568713 | None:intergenic | 35.0% | |
| !! | TATATGGCTTTTGGTGTATC+TGG | - | chr4_3:56568699-56568718 | Msa0649820:CDS | 35.0% |
| GAGCTATTCAACATATAGCA+GGG | - | chr4_3:56568721-56568740 | Msa0649820:CDS | 35.0% | |
| ACTAGTAGGAGATTTATTCG+AGG | - | chr4_3:56568932-56568951 | Msa0649820:CDS | 35.0% | |
| GTTGCTTAATGTTTCATCCT+TGG | - | chr4_3:56569030-56569049 | Msa0649820:five_prime_UTR | 35.0% | |
| ATAATGCAAAATGAGCCTAC+CGG | + | chr4_3:56569133-56569152 | None:intergenic | 35.0% | |
| TGTATTTCTCTTCGGAATGC+TGG | + | chr4_3:56564186-56564205 | None:intergenic | 40.0% | |
| GTTTCTTAATTGCTCCTCTG+AGG | + | chr4_3:56564231-56564250 | None:intergenic | 40.0% | |
| TTTCGAGAAGTGGAAAAGGA+TGG | + | chr4_3:56564271-56564290 | None:intergenic | 40.0% | |
| TACGTTTCGAGAAGTGGAAA+AGG | + | chr4_3:56564275-56564294 | None:intergenic | 40.0% | |
| ATTCAGCAACAACGACAAAG+TGG | + | chr4_3:56564355-56564374 | None:intergenic | 40.0% | |
| CTTTGTCGTTGTTGCTGAAT+TGG | - | chr4_3:56564355-56564374 | Msa0649820:intron | 40.0% | |
| GAATTGGATCGATGTAGTGT+AGG | - | chr4_3:56564371-56564390 | Msa0649820:intron | 40.0% | |
| ! | TCTGTTTCTCTTCTCTTAGC+TGG | - | chr4_3:56564492-56564511 | Msa0649820:CDS | 40.0% |
| ! | TCTGGAACCATGCAATTCTT+AGG | - | chr4_3:56564622-56564641 | Msa0649820:intron | 40.0% |
| AAACGGTCCAGATTCAAACT+TGG | + | chr4_3:56564777-56564796 | None:intergenic | 40.0% | |
| ATTAACCAAGCAATTGGGCT+CGG | - | chr4_3:56564926-56564945 | Msa0649820:intron | 40.0% | |
| AATCGAGTTCAATTCCTGAG+TGG | - | chr4_3:56564989-56565008 | Msa0649820:intron | 40.0% | |
| GACAAAGAATTGTTCCACTC+AGG | + | chr4_3:56565006-56565025 | None:intergenic | 40.0% | |
| GAGTGGAACAATTCTTTGTC+GGG | - | chr4_3:56565006-56565025 | Msa0649820:intron | 40.0% | |
| TAATCTGGATTTCGGTTGTG+AGG | + | chr4_3:56565041-56565060 | None:intergenic | 40.0% | |
| ! | AATGTAAGTTGAGAAAGGGG+TGG | - | chr4_3:56565265-56565284 | Msa0649820:intron | 40.0% |
| GTATCTGTGCAGATATGTGT+TGG | - | chr4_3:56565293-56565312 | Msa0649820:intron | 40.0% | |
| TGTGCAGATATGTGTTGGAA+GGG | - | chr4_3:56565298-56565317 | Msa0649820:intron | 40.0% | |
| !! | GGGGGTTTTGATAGTTTACT+TGG | - | chr4_3:56565333-56565352 | Msa0649820:CDS | 40.0% |
| !! | AAATGGACTAGTTTAGCCCA+GGG | + | chr4_3:56565424-56565443 | None:intergenic | 40.0% |
| TCTCCAGTTACTGATGTTAC+AGG | - | chr4_3:56565538-56565557 | Msa0649820:intron | 40.0% | |
| TACATCGTCATGATTGGACA+TGG | - | chr4_3:56565693-56565712 | Msa0649820:intron | 40.0% | |
| ! | ACTGAGCAAATTTTGTGCTG+TGG | - | chr4_3:56565729-56565748 | Msa0649820:intron | 40.0% |
| ! | AACAGAGGGTCTTGTCAAAT+AGG | + | chr4_3:56565763-56565782 | None:intergenic | 40.0% |
| ATTTGACAAGACCCTCTGTT+TGG | - | chr4_3:56565763-56565782 | Msa0649820:intron | 40.0% | |
| ATGGAAAATCTCACTCCCTT+TGG | - | chr4_3:56565904-56565923 | Msa0649820:CDS | 40.0% | |
| AGCAGCGCAACTATAAATCT+AGG | - | chr4_3:56566044-56566063 | Msa0649820:intron | 40.0% | |
| AGGACCTATCCTTCAAACTT+AGG | - | chr4_3:56566249-56566268 | Msa0649820:CDS | 40.0% | |
| GGACCTATCCTTCAAACTTA+GGG | - | chr4_3:56566250-56566269 | Msa0649820:CDS | 40.0% | |
| CTACCCTAAGTTTGAAGGAT+AGG | + | chr4_3:56566256-56566275 | None:intergenic | 40.0% | |
| CTATCCTTCAAACTTAGGGT+AGG | - | chr4_3:56566254-56566273 | Msa0649820:CDS | 40.0% | |
| ! | TTAGGGTAGGTATTGCTATC+AGG | - | chr4_3:56566267-56566286 | Msa0649820:CDS | 40.0% |
| ! | ATTTGCCATAGCTAGCTTCT+AGG | - | chr4_3:56566294-56566313 | Msa0649820:CDS | 40.0% |
| ! | ATGAGTTGTGACTTGTGACT+TGG | - | chr4_3:56566351-56566370 | Msa0649820:CDS | 40.0% |
| ! | TGAGTTGTGACTTGTGACTT+GGG | - | chr4_3:56566352-56566371 | Msa0649820:CDS | 40.0% |
| CCTGCTTGTGAAAGTCTAAA+CGG | + | chr4_3:56566521-56566540 | None:intergenic | 40.0% | |
| TACTATCCCATTAGCTATGG+AGG | + | chr4_3:56566584-56566603 | None:intergenic | 40.0% | |
| !!! | TTATTGTTTTGGCAGCTGAC+TGG | - | chr4_3:56566695-56566714 | Msa0649820:intron | 40.0% |
| TCATACAGGCCAATATATGC+AGG | - | chr4_3:56566822-56566841 | Msa0649820:intron | 40.0% | |
| CTTTGTACAGTCCGATATAC+TGG | - | chr4_3:56566852-56566871 | Msa0649820:intron | 40.0% | |
| TGATAAGGCTTCCATATCTC+AGG | - | chr4_3:56566947-56566966 | Msa0649820:intron | 40.0% | |
| GATCTTTCAACCTTTGACGA+AGG | - | chr4_3:56566972-56566991 | Msa0649820:intron | 40.0% | |
| GATAAACAGACCTTCGTCAA+AGG | + | chr4_3:56566985-56567004 | None:intergenic | 40.0% | |
| GATCTTTGTAGCATCAAACC+AGG | + | chr4_3:56567098-56567117 | None:intergenic | 40.0% | |
| AATTACTTCCCCTTCAGACT+TGG | - | chr4_3:56567173-56567192 | Msa0649820:intron | 40.0% | |
| TCACATATCCAAGTCTGAAG+GGG | + | chr4_3:56567184-56567203 | None:intergenic | 40.0% | |
| GTTCACATATCCAAGTCTGA+AGG | + | chr4_3:56567186-56567205 | None:intergenic | 40.0% | |
| ! | AATGCACGGATTGTAGTTAC+TGG | - | chr4_3:56567314-56567333 | Msa0649820:intron | 40.0% |
| ! | ATTCCAGTTCATTGATGGCA+TGG | - | chr4_3:56567505-56567524 | Msa0649820:intron | 40.0% |
| GTTCCTTAAACAATGCCCTT+AGG | - | chr4_3:56567672-56567691 | Msa0649820:CDS | 40.0% | |
| !! | TTCCCTAAGGGCATTGTTTA+AGG | + | chr4_3:56567678-56567697 | None:intergenic | 40.0% |
| CATTCTCTCCTTTGTTCAGT+TGG | - | chr4_3:56567828-56567847 | Msa0649820:intron | 40.0% | |
| ! | CTTTTTACATCCCTTGCTAC+TGG | - | chr4_3:56568017-56568036 | Msa0649820:intron | 40.0% |
| CAGCATAATCATGGGAGAAA+CGG | + | chr4_3:56568049-56568068 | None:intergenic | 40.0% | |
| GAAGGGTTGGATATGATGTA+TGG | - | chr4_3:56568394-56568413 | Msa0649820:intron | 40.0% | |
| !! | ATTAGGTAGCCTTATGCTAG+AGG | - | chr4_3:56568423-56568442 | Msa0649820:intron | 40.0% |
| CGAACGTTAAGTATCTAGTC+AGG | + | chr4_3:56568498-56568517 | None:intergenic | 40.0% | |
| GATACTTAACGTTCGTGCAA+TGG | - | chr4_3:56568503-56568522 | Msa0649820:intron | 40.0% | |
| GTGCAATGGCATATCATTTG+AGG | - | chr4_3:56568517-56568536 | Msa0649820:intron | 40.0% | |
| CCAAAAGCCATATAGAGTTC+GGG | + | chr4_3:56568693-56568712 | None:intergenic | 40.0% | |
| GGAGCTATTCAACATATAGC+AGG | - | chr4_3:56568720-56568739 | Msa0649820:CDS | 40.0% | |
| TTCAACATATAGCAGGGATG+AGG | - | chr4_3:56568727-56568746 | Msa0649820:CDS | 40.0% | |
| TCAACATATAGCAGGGATGA+GGG | - | chr4_3:56568728-56568747 | Msa0649820:CDS | 40.0% | |
| GTTCACAGCAACAATGACTT+TGG | + | chr4_3:56568757-56568776 | None:intergenic | 40.0% | |
| TGCTGATGCTCCTATATTTC+AGG | - | chr4_3:56568782-56568801 | Msa0649820:CDS | 40.0% | |
| ACATGAGGCAAAACTGTTTC+AGG | + | chr4_3:56568881-56568900 | None:intergenic | 40.0% | |
| GTAGTTCAGCATATCACATG+AGG | + | chr4_3:56568896-56568915 | None:intergenic | 40.0% | |
| CATGTGATATGCTGAACTAC+AGG | - | chr4_3:56568896-56568915 | Msa0649820:intron | 40.0% | |
| ! | GAACTACAGGTTGCTGATTA+TGG | - | chr4_3:56568909-56568928 | Msa0649820:intron | 40.0% |
| !! | GTTGCTGATTATGGACTAGT+AGG | - | chr4_3:56568918-56568937 | Msa0649820:intron | 40.0% |
| TGGAACATTATACTACCGGT+AGG | - | chr4_3:56569115-56569134 | Msa0649820:five_prime_UTR | 40.0% | |
| TTTCTCTTCGGAATGCTGGT+TGG | + | chr4_3:56564182-56564201 | None:intergenic | 45.0% | |
| ATTGTTAGGAAGACACGTGG+CGG | + | chr4_3:56564466-56564485 | None:intergenic | 45.0% | |
| GTCATTGTTAGGAAGACACG+TGG | + | chr4_3:56564469-56564488 | None:intergenic | 45.0% | |
| GAAGCAGCTTGATGAAGAGA+AGG | + | chr4_3:56564525-56564544 | None:intergenic | 45.0% | |
| GAGTAACCTGAGAGATGGAA+GGG | + | chr4_3:56564566-56564585 | None:intergenic | 45.0% | |
| TGAGTAACCTGAGAGATGGA+AGG | + | chr4_3:56564567-56564586 | None:intergenic | 45.0% | |
| TGAGTGAGTAACCTGAGAGA+TGG | + | chr4_3:56564571-56564590 | None:intergenic | 45.0% | |
| AGACATGATTGTAAGGGAGC+TGG | - | chr4_3:56564844-56564863 | Msa0649820:intron | 45.0% | |
| ATGATTGTAAGGGAGCTGGA+TGG | - | chr4_3:56564848-56564867 | Msa0649820:intron | 45.0% | |
| TGATTGTAAGGGAGCTGGAT+GGG | - | chr4_3:56564849-56564868 | Msa0649820:intron | 45.0% | |
| TGGTTAATGAGCTCCACCAA+AGG | - | chr4_3:56564950-56564969 | Msa0649820:intron | 45.0% | |
| ! | TGTTAACCCTCTGGTTCCTA+GGG | + | chr4_3:56565078-56565097 | None:intergenic | 45.0% |
| CTGTGCAGATATGTGTTGGA+AGG | - | chr4_3:56565297-56565316 | Msa0649820:intron | 45.0% | |
| ! | TTACTTGGGTATGCTGCTTG+TGG | - | chr4_3:56565348-56565367 | Msa0649820:CDS | 45.0% |
| !! | CAAATGGACTAGTTTAGCCC+AGG | + | chr4_3:56565425-56565444 | None:intergenic | 45.0% |
| CTGGGCTAAACTAGTCCATT+TGG | - | chr4_3:56565423-56565442 | Msa0649820:intron | 45.0% | |
| ! | GTCCATTTGGTTCAGCAAAG+AGG | - | chr4_3:56565436-56565455 | Msa0649820:intron | 45.0% |
| CACCTCTTTGCTGAACCAAA+TGG | + | chr4_3:56565441-56565460 | None:intergenic | 45.0% | |
| ! | CATTTGGTTCAGCAAAGAGG+TGG | - | chr4_3:56565439-56565458 | Msa0649820:intron | 45.0% |
| GTTGCAAAGCAAGAGAAGGA+TGG | + | chr4_3:56565861-56565880 | None:intergenic | 45.0% | |
| GACAGTTGCAAAGCAAGAGA+AGG | + | chr4_3:56565865-56565884 | None:intergenic | 45.0% | |
| CTCAAACAGTCCAGGTTTAC+AGG | + | chr4_3:56566231-56566250 | None:intergenic | 45.0% | |
| CTGTAAACCTGGACTGTTTG+AGG | - | chr4_3:56566229-56566248 | Msa0649820:CDS | 45.0% | |
| CAAGACCTAGAAGCTAGCTA+TGG | + | chr4_3:56566302-56566321 | None:intergenic | 45.0% | |
| CCGTTTAGACTTTCACAAGC+AGG | - | chr4_3:56566518-56566537 | Msa0649820:intron | 45.0% | |
| ! | AAGGACTGGCACCAGTATAT+CGG | + | chr4_3:56566866-56566885 | None:intergenic | 45.0% |
| ! | TCAACAGGCTTCTGAGAAAC+AGG | + | chr4_3:56566918-56566937 | None:intergenic | 45.0% |
| TGACAGATCTGGACAAGTCT+AGG | - | chr4_3:56567246-56567265 | Msa0649820:intron | 45.0% | |
| CAAACTTCTCGGGATGATGA+AGG | - | chr4_3:56567278-56567297 | Msa0649820:intron | 45.0% | |
| ATGATGAAGGACCAGACCTT+GGG | - | chr4_3:56567291-56567310 | Msa0649820:intron | 45.0% | |
| TCTCCATGCCATCAATGAAC+TGG | + | chr4_3:56567511-56567530 | None:intergenic | 45.0% | |
| CATGCTAGCAAGTTCCCTAA+GGG | + | chr4_3:56567690-56567709 | None:intergenic | 45.0% | |
| TCATGCTAGCAAGTTCCCTA+AGG | + | chr4_3:56567691-56567710 | None:intergenic | 45.0% | |
| CGCTATCATGTGTTAAGGCA+TGG | + | chr4_3:56567742-56567761 | None:intergenic | 45.0% | |
| GAGTAGCACCAACTGAACAA+AGG | + | chr4_3:56567839-56567858 | None:intergenic | 45.0% | |
| CATCTGTGTGTGGAACAAAG+AGG | - | chr4_3:56568159-56568178 | Msa0649820:intron | 45.0% | |
| GGAAAATTAAAACGCCAGCC+TGG | - | chr4_3:56568340-56568359 | Msa0649820:intron | 45.0% | |
| CATCATATCCAACCCTTCCT+CGG | + | chr4_3:56568392-56568411 | None:intergenic | 45.0% | |
| TGTTGCTCCCGAACTCTATA+TGG | - | chr4_3:56568683-56568702 | Msa0649820:CDS | 45.0% | |
| ! | CCCGAACTCTATATGGCTTT+TGG | - | chr4_3:56568690-56568709 | Msa0649820:CDS | 45.0% |
| AACTGTTTCAGGATTGCTCG+TGG | + | chr4_3:56568870-56568889 | None:intergenic | 45.0% | |
| ! | GGAAGCTTTTCCAACAACTC+TGG | + | chr4_3:56568963-56568982 | None:intergenic | 45.0% |
| !! | GAATTATATATTAAAATATA+TGG | + | chr4_3:56567720-56567739 | None:intergenic | 5.0% |
| GGAGAGAGAAGGAGGTTTGA+TGG | + | chr4_3:56564433-56564452 | None:intergenic | 50.0% | |
| ! | TCTCTTCTCTTAGCTGGCTC+TGG | - | chr4_3:56564498-56564517 | Msa0649820:CDS | 50.0% |
| AACCTGAGAGATGGAAGGGT+GGG | + | chr4_3:56564562-56564581 | None:intergenic | 50.0% | |
| TAACCTGAGAGATGGAAGGG+TGG | + | chr4_3:56564563-56564582 | None:intergenic | 50.0% | |
| GATTGTAAGGGAGCTGGATG+GGG | - | chr4_3:56564850-56564869 | Msa0649820:intron | 50.0% | |
| CTGAACGATTCGTCCTTTGG+TGG | + | chr4_3:56564966-56564985 | None:intergenic | 50.0% | |
| CACCAAAGGACGAATCGTTC+AGG | - | chr4_3:56564964-56564983 | Msa0649820:intron | 50.0% | |
| CTCCTGAACGATTCGTCCTT+TGG | + | chr4_3:56564969-56564988 | None:intergenic | 50.0% | |
| ! | GGAAGGGGCTCTTGATAATC+TGG | + | chr4_3:56565056-56565075 | None:intergenic | 50.0% |
| ! | GTTAACCCTCTGGTTCCTAG+GGG | + | chr4_3:56565077-56565096 | None:intergenic | 50.0% |
| ! | GTGTTAACCCTCTGGTTCCT+AGG | + | chr4_3:56565079-56565098 | None:intergenic | 50.0% |
| TCTAAAAGAGCAGCAGCACG+CGG | + | chr4_3:56565514-56565533 | None:intergenic | 50.0% | |
| ACTCCCTTTGGACTGTGTCT+GGG | - | chr4_3:56565916-56565935 | Msa0649820:CDS | 50.0% | |
| CTTCCCAGACACAGTCCAAA+GGG | + | chr4_3:56565922-56565941 | None:intergenic | 50.0% | |
| TCTTCCCAGACACAGTCCAA+AGG | + | chr4_3:56565923-56565942 | None:intergenic | 50.0% | |
| GATAGGTCCTCAAACAGTCC+AGG | + | chr4_3:56566239-56566258 | None:intergenic | 50.0% | |
| ! | TGTGACTTGTGACTTGGGTG+AGG | - | chr4_3:56566357-56566376 | Msa0649820:CDS | 50.0% |
| GATGATGAAGGACCAGACCT+TGG | - | chr4_3:56567290-56567309 | Msa0649820:intron | 50.0% | |
| CTACAATCCGTGCATTCCCA+AGG | + | chr4_3:56567310-56567329 | None:intergenic | 50.0% | |
| ! | GCACGGATTGTAGTTACTGG+TGG | - | chr4_3:56567317-56567336 | Msa0649820:intron | 50.0% |
| ACCAGCAGCACCAAGTTTCT+TGG | + | chr4_3:56567390-56567409 | None:intergenic | 50.0% | |
| TGAATGACGAGGTCTCACTC+TGG | - | chr4_3:56567988-56568007 | Msa0649820:intron | 50.0% | |
| ACGGAGTACACCAGTAGCAA+GGG | + | chr4_3:56568030-56568049 | None:intergenic | 50.0% | |
| AACGGAGTACACCAGTAGCA+AGG | + | chr4_3:56568031-56568050 | None:intergenic | 50.0% | |
| CTGGTCCAATCGCTGTGTAT+GGG | - | chr4_3:56568359-56568378 | Msa0649820:intron | 50.0% | |
| TGGTCCAATCGCTGTGTATG+GGG | - | chr4_3:56568360-56568379 | Msa0649820:intron | 50.0% | |
| ! | CTCTTCGGAATGCTGGTTGG+TGG | + | chr4_3:56564179-56564198 | None:intergenic | 55.0% |
| GGGTAGCACTCTTGTCATCG+CGG | - | chr4_3:56564392-56564411 | Msa0649820:intron | 55.0% | |
| GTCATCGCGGAGCACGATAA+CGG | - | chr4_3:56564405-56564424 | Msa0649820:intron | 55.0% | |
| ! | ACCAAGCAATTGGGCTCGGT+TGG | - | chr4_3:56564930-56564949 | Msa0649820:intron | 55.0% |
| ACCAACCGAGCCCAATTGCT+TGG | + | chr4_3:56564934-56564953 | None:intergenic | 55.0% | |
| TATCAAGAGCCCCTTCCCCT+AGG | - | chr4_3:56565059-56565078 | Msa0649820:intron | 55.0% | |
| ! | GGGTATGCTGCTTGTGGTGT+AGG | - | chr4_3:56565354-56565373 | Msa0649820:intron | 55.0% |
| AGAACCCATTGGCAGAACCC+TGG | - | chr4_3:56565404-56565423 | Msa0649820:intron | 55.0% | |
| GAACCCATTGGCAGAACCCT+GGG | - | chr4_3:56565405-56565424 | Msa0649820:intron | 55.0% | |
| TAGCCCAGGGTTCTGCCAAT+GGG | + | chr4_3:56565411-56565430 | None:intergenic | 55.0% | |
| TTAGCCCAGGGTTCTGCCAA+TGG | + | chr4_3:56565412-56565431 | None:intergenic | 55.0% | |
| CACTCCCTTTGGACTGTGTC+TGG | - | chr4_3:56565915-56565934 | Msa0649820:CDS | 55.0% | |
| GACCAGACCTTGGGAATGCA+CGG | - | chr4_3:56567300-56567319 | Msa0649820:intron | 55.0% | |
| ATCCGTGCATTCCCAAGGTC+TGG | + | chr4_3:56567305-56567324 | None:intergenic | 55.0% | |
| !! | GCCAAGAAACTTGGTGCTGC+TGG | - | chr4_3:56567386-56567405 | Msa0649820:intron | 55.0% |
| ! | ACTCGTGCTGCTGTTGATGC+AGG | - | chr4_3:56567855-56567874 | Msa0649820:intron | 55.0% |
| CCATACACAGCGATTGGACC+AGG | + | chr4_3:56568361-56568380 | None:intergenic | 55.0% | |
| CCTGGTCCAATCGCTGTGTA+TGG | - | chr4_3:56568358-56568377 | Msa0649820:intron | 55.0% | |
| CAATCGCTGTGTATGGGGTC+CGG | - | chr4_3:56568365-56568384 | Msa0649820:intron | 55.0% | |
| TATCCAACCCTTCCTCGGAC+CGG | + | chr4_3:56568387-56568406 | None:intergenic | 55.0% | |
| ! | CGAGGTGCTACCAGAGTTGT+TGG | - | chr4_3:56568950-56568969 | Msa0649820:CDS | 55.0% |
| GCGACTCGCATGATCCTCAG+AGG | - | chr4_3:56564214-56564233 | Msa0649820:exon | 60.0% | |
| TGGAGTGCGGAGAGAGAAGG+AGG | + | chr4_3:56564441-56564460 | None:intergenic | 60.0% | |
| CTGAGAGATGGAAGGGTGGG+AGG | + | chr4_3:56564559-56564578 | None:intergenic | 60.0% | |
| CTCCCACCCTTCCATCTCTC+AGG | - | chr4_3:56564557-56564576 | Msa0649820:intron | 60.0% | |
| ! | CCTCTGGTTCCTAGGGGAAG+GGG | + | chr4_3:56565071-56565090 | None:intergenic | 60.0% |
| ! | CCCTCTGGTTCCTAGGGGAA+GGG | + | chr4_3:56565072-56565091 | None:intergenic | 60.0% |
| CCCTTCCCCTAGGAACCAGA+GGG | - | chr4_3:56565069-56565088 | Msa0649820:intron | 60.0% | |
| ! | ACCCTCTGGTTCCTAGGGGA+AGG | + | chr4_3:56565073-56565092 | None:intergenic | 60.0% |
| GCTTGTGGTGTAGGTGCTCG+TGG | - | chr4_3:56565363-56565382 | Msa0649820:intron | 60.0% | |
| TGTGGTGTAGGTGCTCGTGG+CGG | - | chr4_3:56565366-56565385 | Msa0649820:intron | 60.0% | |
| ACACAGCGATTGGACCAGGC+TGG | + | chr4_3:56568357-56568376 | None:intergenic | 60.0% | |
| CGGACCCCATACACAGCGAT+TGG | + | chr4_3:56568367-56568386 | None:intergenic | 60.0% | |
| GCGTGGAGTGCGGAGAGAGA+AGG | + | chr4_3:56564444-56564463 | None:intergenic | 65.0% | |
| TAGGAAGACACGTGGCGGCG+TGG | + | chr4_3:56564461-56564480 | None:intergenic | 65.0% | |
| CCCCTTCCCCTAGGAACCAG+AGG | - | chr4_3:56565068-56565087 | Msa0649820:intron | 65.0% | |
| TGTGTATGGGGTCCGGTCCG+AGG | - | chr4_3:56568372-56568391 | Msa0649820:intron | 65.0% | |
| TATGGGGTCCGGTCCGAGGA+AGG | - | chr4_3:56568376-56568395 | Msa0649820:intron | 65.0% | |
| ATGGGGTCCGGTCCGAGGAA+GGG | - | chr4_3:56568377-56568396 | Msa0649820:intron | 65.0% | |
| ACACGTGGCGGCGTGGAGTG+CGG | + | chr4_3:56564454-56564473 | None:intergenic | 70.0% | |
| GGTCCGGTCCGAGGAAGGGT+TGG | - | chr4_3:56568381-56568400 | Msa0649820:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 56564044 | 56569170 | 56564044 | ID=Msa0649820;Name=Msa0649820 |
| chr4_3 | mRNA | 56564044 | 56569170 | 56564044 | ID=Msa0649820-mRNA-1;Parent=Msa0649820;Name=Msa0649820-mRNA-1;_AED=0.08;_eAED=0.08;_QI=167|1|1|1|1|1|8|175|356 |
| chr4_3 | exon | 56564044 | 56564296 | 56564044 | ID=Msa0649820-mRNA-1:exon:14728;Parent=Msa0649820-mRNA-1 |
| chr4_3 | exon | 56564411 | 56564551 | 56564411 | ID=Msa0649820-mRNA-1:exon:14727;Parent=Msa0649820-mRNA-1 |
| chr4_3 | exon | 56565315 | 56565367 | 56565315 | ID=Msa0649820-mRNA-1:exon:14726;Parent=Msa0649820-mRNA-1 |
| chr4_3 | exon | 56565807 | 56565962 | 56565807 | ID=Msa0649820-mRNA-1:exon:14725;Parent=Msa0649820-mRNA-1 |
| chr4_3 | exon | 56566221 | 56566384 | 56566221 | ID=Msa0649820-mRNA-1:exon:14724;Parent=Msa0649820-mRNA-1 |
| chr4_3 | exon | 56567627 | 56567838 | 56567627 | ID=Msa0649820-mRNA-1:exon:14723;Parent=Msa0649820-mRNA-1 |
| chr4_3 | exon | 56568636 | 56568821 | 56568636 | ID=Msa0649820-mRNA-1:exon:14722;Parent=Msa0649820-mRNA-1 |
| chr4_3 | exon | 56568923 | 56569170 | 56568923 | ID=Msa0649820-mRNA-1:exon:14721;Parent=Msa0649820-mRNA-1 |
| chr4_3 | five_prime_UTR | 56569004 | 56569170 | 56569004 | ID=Msa0649820-mRNA-1:five_prime_utr;Parent=Msa0649820-mRNA-1 |
| chr4_3 | CDS | 56568923 | 56569003 | 56568923 | ID=Msa0649820-mRNA-1:cds;Parent=Msa0649820-mRNA-1 |
| chr4_3 | CDS | 56568636 | 56568821 | 56568636 | ID=Msa0649820-mRNA-1:cds;Parent=Msa0649820-mRNA-1 |
| chr4_3 | CDS | 56567627 | 56567838 | 56567627 | ID=Msa0649820-mRNA-1:cds;Parent=Msa0649820-mRNA-1 |
| chr4_3 | CDS | 56566221 | 56566384 | 56566221 | ID=Msa0649820-mRNA-1:cds;Parent=Msa0649820-mRNA-1 |
| chr4_3 | CDS | 56565807 | 56565962 | 56565807 | ID=Msa0649820-mRNA-1:cds;Parent=Msa0649820-mRNA-1 |
| chr4_3 | CDS | 56565315 | 56565367 | 56565315 | ID=Msa0649820-mRNA-1:cds;Parent=Msa0649820-mRNA-1 |
| chr4_3 | CDS | 56564411 | 56564551 | 56564411 | ID=Msa0649820-mRNA-1:cds;Parent=Msa0649820-mRNA-1 |
| chr4_3 | CDS | 56564219 | 56564296 | 56564219 | ID=Msa0649820-mRNA-1:cds;Parent=Msa0649820-mRNA-1 |
| chr4_3 | three_prime_UTR | 56564044 | 56564218 | 56564044 | ID=Msa0649820-mRNA-1:three_prime_utr;Parent=Msa0649820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
