Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683000 | XP_003606450.1 | 89.209 | 417 | 4 | 2 | 1 | 376 | 1 | 417 | 0.0 | 754 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683000 | sp|Q75IM9|IVD_ORYSJ | 80.779 | 385 | 33 | 2 | 33 | 376 | 25 | 409 | 0.0 | 634 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683000 | G7JQF7 | 89.209 | 417 | 4 | 2 | 1 | 376 | 1 | 417 | 0.0 | 754 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008590 | Msa0683000 | 0.816085 | 6.631211e-52 | -8.615850e-47 |
| Msa0643520 | Msa0683000 | 0.927069 | 1.963733e-91 | -8.615850e-47 |
| Msa0649820 | Msa0683000 | 0.801532 | 8.612261e-49 | -8.615850e-47 |
| Msa0683000 | Msa0683030 | 0.967235 | 5.337065e-127 | -8.615850e-47 |
| Msa0683000 | Msa0982380 | 0.810642 | 1.041658e-50 | -8.615850e-47 |
| Msa0683000 | Msa1217950 | 0.834194 | 3.451408e-56 | -8.615850e-47 |
| Msa0683000 | Msa1462640 | 0.802307 | 5.969955e-49 | -8.615850e-47 |
| Msa0374790 | Msa0683000 | 0.818018 | 2.439723e-52 | -8.615850e-47 |
| Msa0424000 | Msa0683000 | 0.811604 | 6.443992e-51 | -8.615850e-47 |
| Msa0481100 | Msa0683000 | 0.826527 | 2.582827e-54 | -8.615850e-47 |
| Msa0547440 | Msa0683000 | 0.863882 | 1.812737e-64 | -8.615850e-47 |
| Msa0602180 | Msa0683000 | 0.949294 | 1.701417e-107 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683000 | MtrunA17_Chr4g0029681 | 89.209 | 417 | 4 | 2 | 1 | 376 | 1 | 417 | 0.0 | 754 |
| Msa0683000 | MtrunA17_Chr7g0242641 | 29.814 | 322 | 220 | 3 | 52 | 372 | 28 | 344 | 1.58e-44 | 157 |
| Msa0683000 | MtrunA17_Chr2g0295521 | 26.736 | 288 | 199 | 6 | 93 | 370 | 519 | 804 | 2.02e-21 | 96.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683000 | AT3G45300.1 | 86.667 | 345 | 33 | 1 | 45 | 376 | 65 | 409 | 0.0 | 606 |
| Msa0683000 | AT3G51840.1 | 29.193 | 322 | 222 | 3 | 52 | 372 | 106 | 422 | 2.80e-42 | 153 |
| Msa0683000 | AT3G06810.1 | 26.736 | 288 | 199 | 6 | 93 | 370 | 530 | 815 | 2.14e-21 | 96.7 |
| Msa0683000 | AT5G65110.1 | 23.955 | 359 | 221 | 13 | 68 | 374 | 133 | 491 | 1.21e-11 | 66.6 |
| Msa0683000 | AT5G65110.2 | 23.955 | 359 | 221 | 13 | 68 | 374 | 133 | 491 | 1.26e-11 | 66.6 |
Find 117 sgRNAs with CRISPR-Local
Find 471 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCTAGTTTATCCAATTTC+TGG | 0.126605 | 4_4:-45348471 | None:intergenic |
| GGATCTGTTGGTCTTTCTTA+TGG | 0.218631 | 4_4:+45347163 | Msa0683000:CDS |
| ATTCTTGTTCTAATCATCTT+TGG | 0.276096 | 4_4:-45344905 | None:intergenic |
| ATTCAGTACTGCCCAGAAAT+TGG | 0.276268 | 4_4:+45348459 | Msa0683000:CDS |
| GAGATCAGAAGAATGATTAT+TGG | 0.293324 | 4_4:+45351309 | Msa0683000:CDS |
| TGCTTATTTGCAGAGGAGTA+TGG | 0.296519 | 4_4:+45347079 | Msa0683000:intron |
| GGAATCTATTACATTACTTT+TGG | 0.301187 | 4_4:-45351577 | None:intergenic |
| AGCAACACAAGTTGCTTTGC+AGG | 0.308452 | 4_4:+45351188 | Msa0683000:CDS |
| AGGTCTGAGATTCAATAATT+TGG | 0.315835 | 4_4:+45351552 | Msa0683000:three_prime_UTR |
| CATGATGTCTGGACTGGATT+TGG | 0.321758 | 4_4:+45349329 | Msa0683000:CDS |
| AGCAGTTCGGTCGTCCTATT+GGG | 0.323036 | 4_4:+45349433 | Msa0683000:CDS |
| GAGCAGTTCGGTCGTCCTAT+TGG | 0.326208 | 4_4:+45349432 | Msa0683000:CDS |
| GTTCCGGAGGAAAATGTTCT+TGG | 0.329541 | 4_4:+45348626 | Msa0683000:CDS |
| TCTGAAAAGAGTTGAGAAAA+TGG | 0.338845 | 4_4:-45344942 | None:intergenic |
| TCTTCTGATCTCACTTGTTC+CGG | 0.339052 | 4_4:-45351298 | None:intergenic |
| CTTCGAGAATTGCTTTGTTC+CGG | 0.341846 | 4_4:+45348610 | Msa0683000:CDS |
| TACTAAATAGTAAACTAATA+TGG | 0.341856 | 4_4:-45344741 | None:intergenic |
| TGGGGATCATGTGGGAGCTT+TGG | 0.343115 | 4_4:+45347755 | Msa0683000:CDS |
| TGCAAAGCTGATCGTGTAGA+TGG | 0.343954 | 4_4:+45347905 | Msa0683000:CDS |
| AAGCACATACAGATCTAATA+TGG | 0.347321 | 4_4:-45351460 | None:intergenic |
| ACCTATTGTTGGTACTGTAT+TGG | 0.353949 | 4_4:+45351682 | Msa0683000:three_prime_UTR |
| AACAAGATGTGGTGTACTAA+TGG | 0.357977 | 4_4:+45347947 | Msa0683000:CDS |
| CAGCGCTACTACTAATTTGA+AGG | 0.364024 | 4_4:+45344608 | Msa0683000:five_prime_UTR |
| GAAGAGATTAGCCGAGCTTC+AGG | 0.365845 | 4_4:+45347142 | Msa0683000:CDS |
| CCCTAGTTTATCCAATTTCT+GGG | 0.377085 | 4_4:-45348470 | None:intergenic |
| TCAACTTTGAAGCTTATCTC+TGG | 0.384395 | 4_4:+45347735 | Msa0683000:intron |
| TTGCAGGCGATACAATGTTT+AGG | 0.392157 | 4_4:+45351204 | Msa0683000:CDS |
| CTTCGATGACACTCAGATAC+AGG | 0.395511 | 4_4:+45345024 | Msa0683000:CDS |
| TTGAAGCAAATCATTCCTCT+TGG | 0.399533 | 4_4:+45351501 | Msa0683000:three_prime_UTR |
| TATTGTATATGATATGATAT+CGG | 0.403469 | 4_4:-45344837 | None:intergenic |
| ATGGAATGGGTGTAGTGTTT+TGG | 0.406758 | 4_4:-45344722 | None:intergenic |
| GGAGTCTATGTCATGATGTC+TGG | 0.411304 | 4_4:+45349318 | Msa0683000:intron |
| TGGGGAGTTTCAGTTTATAC+AGG | 0.418608 | 4_4:+45349452 | Msa0683000:CDS |
| ATGCGAAGCTCTACGAGATC+GGG | 0.423929 | 4_4:+45351274 | Msa0683000:CDS |
| TGCTCTCTTTGTCGAACATA+AGG | 0.427952 | 4_4:-45349414 | None:intergenic |
| TTACCAGTTGATTGATACAT+AGG | 0.435581 | 4_4:-45347198 | None:intergenic |
| ATAAACTGAAACTCCCCAAT+AGG | 0.438380 | 4_4:-45349447 | None:intergenic |
| GCAGAGGAGTATGGAGGGCT+TGG | 0.439310 | 4_4:+45347088 | Msa0683000:intron |
| TTCCGGAGGAAAATGTTCTT+GGG | 0.444098 | 4_4:+45348627 | Msa0683000:CDS |
| TGCAGTGCCTTACCTATTGT+TGG | 0.444742 | 4_4:+45351671 | Msa0683000:three_prime_UTR |
| TAACCTATGTATCAATCAAC+TGG | 0.447355 | 4_4:+45347195 | Msa0683000:CDS |
| GACGCAACAGCAGGGTCAAA+AGG | 0.449570 | 4_4:+45348166 | Msa0683000:CDS |
| CATACTAATGTTTGAGCAGT+TGG | 0.450831 | 4_4:-45347971 | None:intergenic |
| CAACTTTGAAGCTTATCTCT+GGG | 0.454090 | 4_4:+45347736 | Msa0683000:intron |
| ACAAGATGTGGTGTACTAAT+GGG | 0.455535 | 4_4:+45347948 | Msa0683000:CDS |
| ATCATCGAGAAGGGAATGCC+TGG | 0.460608 | 4_4:+45348202 | Msa0683000:CDS |
| TAGCTGAATCAGATAGTAGT+AGG | 0.469758 | 4_4:-45344657 | None:intergenic |
| GGCAGTTGAGATAAGGATGA+AGG | 0.474878 | 4_4:-45344701 | None:intergenic |
| ATAGTAAACTAATATGGAAT+GGG | 0.480097 | 4_4:-45344735 | None:intergenic |
| ATACATCTTTACAGTCTTCA+CGG | 0.482149 | 4_4:+45349593 | Msa0683000:CDS |
| AATAGTAAACTAATATGGAA+TGG | 0.482151 | 4_4:-45344736 | None:intergenic |
| GAGTATGGAGGGCTTGGTCT+AGG | 0.483008 | 4_4:+45347094 | Msa0683000:CDS |
| TCCAATACAGTACCAACAAT+AGG | 0.483846 | 4_4:-45351683 | None:intergenic |
| CAATGACATGCTAGTCCCCT+TGG | 0.484232 | 4_4:+45351351 | Msa0683000:exon |
| GAAAATGTTCTTGGGAAAGA+AGG | 0.485757 | 4_4:+45348635 | Msa0683000:CDS |
| TGATTGTTGATTACTTAGCT+TGG | 0.489097 | 4_4:-45344872 | None:intergenic |
| TTCCTCTTGGAAAATGATGA+TGG | 0.489349 | 4_4:+45351514 | Msa0683000:three_prime_UTR |
| TTGATTACTTAGCTTGGTGT+TGG | 0.494607 | 4_4:-45344866 | None:intergenic |
| TATTGGACGTGATCTCTTCA+AGG | 0.497284 | 4_4:+45351326 | Msa0683000:CDS |
| GATGCGAAGCTCTACGAGAT+CGG | 0.508301 | 4_4:+45351273 | Msa0683000:CDS |
| CTATGTCATGATGTCTGGAC+TGG | 0.510832 | 4_4:+45349323 | Msa0683000:CDS |
| CTTGTATCATTGTATAGCAA+TGG | 0.513555 | 4_4:+45347120 | Msa0683000:CDS |
| GTTCTAATCATCTTTGGCAA+CGG | 0.520212 | 4_4:-45344899 | None:intergenic |
| GCAAAGCTGATCGTGTAGAT+GGG | 0.520482 | 4_4:+45347906 | Msa0683000:CDS |
| GCTTATCTCTGGGGATCATG+TGG | 0.520908 | 4_4:+45347746 | Msa0683000:intron |
| TACTAATTTCAGGATTGTGC+TGG | 0.524388 | 4_4:+45351141 | Msa0683000:intron |
| AGCCGAGCTTCAGGATCTGT+TGG | 0.526762 | 4_4:+45347151 | Msa0683000:CDS |
| TTATGTGTATTCTGTAGCTC+GGG | 0.527867 | 4_4:+45349698 | Msa0683000:CDS |
| CTACTACTAATTTGAAGGAA+AGG | 0.528150 | 4_4:+45344613 | Msa0683000:five_prime_UTR |
| AAGCTCTACGAGATCGGGGC+CGG | 0.529045 | 4_4:+45351279 | Msa0683000:CDS |
| ATACAATGTTTAGGTGGAAA+CGG | 0.532313 | 4_4:+45351213 | Msa0683000:CDS |
| CTTATGTGTATTCTGTAGCT+CGG | 0.533799 | 4_4:+45349697 | Msa0683000:CDS |
| CATGCTGACAACATCAGATC+CGG | 0.534166 | 4_4:-45347879 | None:intergenic |
| CACTGCATTTATCATCGAGA+AGG | 0.536640 | 4_4:+45348192 | Msa0683000:CDS |
| TACAGTACCAACAATAGGTA+AGG | 0.541934 | 4_4:-45351678 | None:intergenic |
| CGAGAATTGCTTTGTTCCGG+AGG | 0.542177 | 4_4:+45348613 | Msa0683000:CDS |
| AAAATGTTCTTGGGAAAGAA+GGG | 0.542799 | 4_4:+45348636 | Msa0683000:CDS |
| TTGACTGGAACTGAGCGCCT+CGG | 0.545543 | 4_4:+45351377 | Msa0683000:three_prime_UTR |
| CCCAGAAATTGGATAAACTA+GGG | 0.547673 | 4_4:+45348470 | Msa0683000:CDS |
| TCAGTTCCAGTCAAAATCCA+AGG | 0.562699 | 4_4:-45351368 | None:intergenic |
| GCCCAGAAATTGGATAAACT+AGG | 0.571430 | 4_4:+45348469 | Msa0683000:CDS |
| CTGCATAATACCAAGGGGAC+CGG | 0.575815 | 4_4:-45349370 | None:intergenic |
| AACATAAATAACTGTACTGG+AGG | 0.582553 | 4_4:-45351598 | None:intergenic |
| GTTCGACAAAGAGAGCAGTT+CGG | 0.583442 | 4_4:+45349420 | Msa0683000:CDS |
| TATGTGAACGAGTATCCAAC+CGG | 0.585904 | 4_4:+45351237 | Msa0683000:CDS |
| CAGGCGATACAATGTTTAGG+TGG | 0.587882 | 4_4:+45351207 | Msa0683000:CDS |
| TACTTAACGGGAACAAGATG+TGG | 0.589905 | 4_4:+45347936 | Msa0683000:CDS |
| GACCAACAGATCCTGAAGCT+CGG | 0.593218 | 4_4:-45347153 | None:intergenic |
| AACTTTGAAGCTTATCTCTG+GGG | 0.593388 | 4_4:+45347737 | Msa0683000:intron |
| ATCGAAGAGGAATGAAGTAG+TGG | 0.599042 | 4_4:-45345008 | None:intergenic |
| CAAAGCTGATCGTGTAGATG+GGG | 0.599234 | 4_4:+45347907 | Msa0683000:CDS |
| CGCATCTCTGAGGAGACGAC+CGG | 0.599352 | 4_4:-45351256 | None:intergenic |
| GTAGCTCGGGACTGTGACAA+CGG | 0.602533 | 4_4:+45349711 | Msa0683000:CDS |
| TTATTTGCAGAGGAGTATGG+AGG | 0.603677 | 4_4:+45347082 | Msa0683000:intron |
| CTTATCTCTGGGGATCATGT+GGG | 0.603883 | 4_4:+45347747 | Msa0683000:CDS |
| TATTTGCAGAGGAGTATGGA+GGG | 0.604314 | 4_4:+45347083 | Msa0683000:intron |
| CAGTTCCAGTCAAAATCCAA+GGG | 0.606897 | 4_4:-45351367 | None:intergenic |
| ACTGCATTTATCATCGAGAA+GGG | 0.609190 | 4_4:+45348193 | Msa0683000:CDS |
| GTTCTTGGGAAAGAAGGGAA+AGG | 0.623097 | 4_4:+45348641 | Msa0683000:CDS |
| TGTCTGGACTGGATTTGGAA+AGG | 0.626784 | 4_4:+45349334 | Msa0683000:CDS |
| ACATGACTGCATAATACCAA+GGG | 0.627108 | 4_4:-45349376 | None:intergenic |
| CTCTTTGTCGAACATAAGGA+AGG | 0.631959 | 4_4:-45349410 | None:intergenic |
| GTATCTGAGTGTCATCGAAG+AGG | 0.631985 | 4_4:-45345021 | None:intergenic |
| TTGGATAAACTAGGGATGCG+AGG | 0.637106 | 4_4:+45348478 | Msa0683000:CDS |
| TCTCTGAGGAGACGACCGGT+TGG | 0.638940 | 4_4:-45351252 | None:intergenic |
| TCATCGAGAAGGGAATGCCT+GGG | 0.639355 | 4_4:+45348203 | Msa0683000:CDS |
| GACATGACTGCATAATACCA+AGG | 0.639799 | 4_4:-45349377 | None:intergenic |
| TAATTTAGGATGTTAACCTG+TGG | 0.645371 | 4_4:+45346261 | Msa0683000:intron |
| GCAGTTCGGTCGTCCTATTG+GGG | 0.659632 | 4_4:+45349434 | Msa0683000:CDS |
| TATATGATATGATATCGGTA+TGG | 0.660165 | 4_4:-45344832 | None:intergenic |
| CGTAGAGCTTCGCATCTCTG+AGG | 0.668421 | 4_4:-45351266 | None:intergenic |
| TGCGAAGCTCTACGAGATCG+GGG | 0.673463 | 4_4:+45351275 | Msa0683000:CDS |
| CAACGGAAAAGTTGACCCAA+AGG | 0.674588 | 4_4:+45349728 | Msa0683000:CDS |
| AAAGCTGATCGTGTAGATGG+GGG | 0.688332 | 4_4:+45347908 | Msa0683000:CDS |
| AGTTCCAGTCAAAATCCAAG+GGG | 0.744256 | 4_4:-45351366 | None:intergenic |
| TTACAAAGGAATCATCTCCG+AGG | 0.747071 | 4_4:-45351394 | None:intergenic |
| CATGACTGCATAATACCAAG+GGG | 0.751632 | 4_4:-45349375 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTTAAACTTTTTCATT+TGG | + | chr4_4:45345109-45345128 | Msa0683000:intron | 10.0% |
| !!! | AAATTTAAACTTTTTCATTT+GGG | + | chr4_4:45345110-45345129 | Msa0683000:intron | 10.0% |
| !! | TTAAACAAAGAAAATTAAAA+TGG | - | chr4_4:45348528-45348547 | None:intergenic | 10.0% |
| !! | AATTGAAAAATTCAATTAAA+GGG | - | chr4_4:45349849-45349868 | None:intergenic | 10.0% |
| !! | TAATTGAAAAATTCAATTAA+AGG | - | chr4_4:45349850-45349869 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAAAGAAGAA+TGG | + | chr4_4:45350214-45350233 | Msa0683000:intron | 10.0% |
| !! | AAGATAATAAAAAAAATCAA+AGG | - | chr4_4:45350422-45350441 | None:intergenic | 10.0% |
| !! | TACTAAATAGTAAACTAATA+TGG | - | chr4_4:45344744-45344763 | None:intergenic | 15.0% |
| !! | TATTGTATATGATATGATAT+CGG | - | chr4_4:45344840-45344859 | None:intergenic | 15.0% |
| !!! | TTTTACAACTAACTAAAAAT+GGG | - | chr4_4:45345092-45345111 | None:intergenic | 15.0% |
| !!! | TTTTTACAACTAACTAAAAA+TGG | - | chr4_4:45345093-45345112 | None:intergenic | 15.0% |
| !!! | TTTTACAAAAACAGAATAAT+GGG | - | chr4_4:45345166-45345185 | None:intergenic | 15.0% |
| !!! | TTTTTACAAAAACAGAATAA+TGG | - | chr4_4:45345167-45345186 | None:intergenic | 15.0% |
| !!! | AAAAATTGAACTTTTTTAGT+TGG | + | chr4_4:45345183-45345202 | Msa0683000:intron | 15.0% |
| !!! | AAAATTGAACTTTTTTAGTT+GGG | + | chr4_4:45345184-45345203 | Msa0683000:intron | 15.0% |
| !!! | TTTTATGAAAACAGATAAAT+GGG | - | chr4_4:45345591-45345610 | None:intergenic | 15.0% |
| !!! | TTTTTATGAAAACAGATAAA+TGG | - | chr4_4:45345592-45345611 | None:intergenic | 15.0% |
| !!! | AATTTGAACTTTTTTTCATT+TGG | + | chr4_4:45345610-45345629 | Msa0683000:intron | 15.0% |
| !!! | ATTTGAACTTTTTTTCATTT+GGG | + | chr4_4:45345611-45345630 | Msa0683000:intron | 15.0% |
| !! | ATTTAATAATACATACCTTT+GGG | - | chr4_4:45345791-45345810 | None:intergenic | 15.0% |
| !!! | ATTTTAGAATACAGAAAATA+CGG | - | chr4_4:45346405-45346424 | None:intergenic | 15.0% |
| !!! | ATTTTATATGTCTTACAATT+TGG | - | chr4_4:45347792-45347811 | None:intergenic | 15.0% |
| !!! | GTTTTATACTATATATATGT+GGG | - | chr4_4:45348053-45348072 | None:intergenic | 15.0% |
| !! | ACATATATATAGTATAAAAC+CGG | + | chr4_4:45348053-45348072 | Msa0683000:intron | 15.0% |
| !! | ACTGTAATAAAATGATTTAT+CGG | - | chr4_4:45348384-45348403 | None:intergenic | 15.0% |
| !!! | TAGTCTTTATTATTTTTGAA+AGG | + | chr4_4:45348681-45348700 | Msa0683000:intron | 15.0% |
| !! | ATAAAATAAACCCTTAATTT+GGG | - | chr4_4:45348902-45348921 | None:intergenic | 15.0% |
| !! | AATAAAATAAACCCTTAATT+TGG | - | chr4_4:45348903-45348922 | None:intergenic | 15.0% |
| !!! | AATGAAAATTACTTTTACAA+AGG | - | chr4_4:45351411-45351430 | None:intergenic | 15.0% |
| !!! | AACCTTTTTGAATAATAAAA+AGG | + | chr4_4:45351630-45351649 | Msa0683000:three_prime_UTR | 15.0% |
| !!! | ACCTTTTTGAATAATAAAAA+GGG | + | chr4_4:45351631-45351650 | Msa0683000:three_prime_UTR | 15.0% |
| !!! | TAGGATAGTTATTTTATTCA+CGG | - | chr4_4:45344641-45344660 | None:intergenic | 20.0% |
| !! | ATAGTAAACTAATATGGAAT+GGG | - | chr4_4:45344738-45344757 | None:intergenic | 20.0% |
| !! | AATAGTAAACTAATATGGAA+TGG | - | chr4_4:45344739-45344758 | None:intergenic | 20.0% |
| !! | TTTACAACTAACTAAAAATG+GGG | - | chr4_4:45345091-45345110 | None:intergenic | 20.0% |
| !! | TTTACAAAAACAGAATAATG+GGG | - | chr4_4:45345165-45345184 | None:intergenic | 20.0% |
| !! | GTTACAAAAACAGATAAATT+GGG | - | chr4_4:45345236-45345255 | None:intergenic | 20.0% |
| !! | TGTTACAAAAACAGATAAAT+TGG | - | chr4_4:45345237-45345256 | None:intergenic | 20.0% |
| !!! | AATTTGAACTTTTTATACCT+TGG | + | chr4_4:45345256-45345275 | Msa0683000:intron | 20.0% |
| !! | TTTATGAAAACAGATAAATG+GGG | - | chr4_4:45345590-45345609 | None:intergenic | 20.0% |
| !! | CATTTAATAATACATACCTT+TGG | - | chr4_4:45345792-45345811 | None:intergenic | 20.0% |
| !! | TCCTTCATATAAAAACATTA+GGG | + | chr4_4:45346083-45346102 | Msa0683000:intron | 20.0% |
| !!! | TTTTTAGTAAGAGACTAAAT+TGG | + | chr4_4:45346123-45346142 | Msa0683000:intron | 20.0% |
| !!! | TTTTAGTAAGAGACTAAATT+GGG | + | chr4_4:45346124-45346143 | Msa0683000:intron | 20.0% |
| !!! | GAAAATAAAAAAGTATTACC+TGG | - | chr4_4:45346326-45346345 | None:intergenic | 20.0% |
| !!! | TTTTAGAATACAGAAAATAC+GGG | - | chr4_4:45346404-45346423 | None:intergenic | 20.0% |
| !!! | TGTAATTTCTAGAATCATTT+TGG | + | chr4_4:45346591-45346610 | Msa0683000:intron | 20.0% |
| !! | ATTACACAAATTGAATGATA+TGG | + | chr4_4:45346932-45346951 | Msa0683000:intron | 20.0% |
| !! | AAATTGAATGATATGGAATA+GGG | + | chr4_4:45346939-45346958 | Msa0683000:intron | 20.0% |
| !! | CTTAAATATTTGATATTCCA+AGG | + | chr4_4:45347825-45347844 | Msa0683000:intron | 20.0% |
| !!! | GGTTTTATACTATATATATG+TGG | - | chr4_4:45348054-45348073 | None:intergenic | 20.0% |
| !!! | ATATCTAAGATCTGTTTTAA+AGG | + | chr4_4:45348753-45348772 | Msa0683000:intron | 20.0% |
| !! | AGTAAAACTTCAAAAATAAG+TGG | - | chr4_4:45348866-45348885 | None:intergenic | 20.0% |
| !!! | TCTGTTTCTTATTGTTAATA+CGG | + | chr4_4:45349763-45349782 | Msa0683000:intron | 20.0% |
| !! | AAAATGTAAACATCATTCTT+GGG | + | chr4_4:45349823-45349842 | Msa0683000:intron | 20.0% |
| !! | ATGAATACAAAGAAAACTAT+AGG | + | chr4_4:45350034-45350053 | Msa0683000:intron | 20.0% |
| !!! | AATTATTAAGAAAGCCTTTT+TGG | + | chr4_4:45350393-45350412 | Msa0683000:intron | 20.0% |
| !!! | AAGATTTTTAAAGATTGTGT+AGG | - | chr4_4:45350586-45350605 | None:intergenic | 20.0% |
| !! | TGATTTATGATAGAGAATTA+TGG | + | chr4_4:45350688-45350707 | Msa0683000:intron | 20.0% |
| !!! | AATGATGATGGAAAAAAAAA+AGG | + | chr4_4:45351526-45351545 | Msa0683000:three_prime_UTR | 20.0% |
| !! | AAAAACATAAATAACTGTAC+TGG | - | chr4_4:45351604-45351623 | None:intergenic | 20.0% |
| !!! | ACCCTTTTTATTATTCAAAA+AGG | - | chr4_4:45351635-45351654 | None:intergenic | 20.0% |
| ! | TATATGATATGATATCGGTA+TGG | - | chr4_4:45344835-45344854 | None:intergenic | 25.0% |
| ! | ATTCTTGTTCTAATCATCTT+TGG | - | chr4_4:45344908-45344927 | None:intergenic | 25.0% |
| !! | TCTTCTATTTTCTATCAACT+TGG | + | chr4_4:45345637-45345656 | Msa0683000:intron | 25.0% |
| !! | ATTGCATATCATGCTTTTAA+TGG | + | chr4_4:45345669-45345688 | Msa0683000:intron | 25.0% |
| !! | ATAATTTGTGTGATCAATGT+GGG | - | chr4_4:45345766-45345785 | None:intergenic | 25.0% |
| !! | AATAATTTGTGTGATCAATG+TGG | - | chr4_4:45345767-45345786 | None:intergenic | 25.0% |
| !! | GTATTATTTATCTTTTGCTG+GGG | - | chr4_4:45345886-45345905 | None:intergenic | 25.0% |
| !! | GGTATTATTTATCTTTTGCT+GGG | - | chr4_4:45345887-45345906 | None:intergenic | 25.0% |
| !! | TGGTATTATTTATCTTTTGC+TGG | - | chr4_4:45345888-45345907 | None:intergenic | 25.0% |
| !!! | TAGTCTGTCATTTTCAAATT+GGG | + | chr4_4:45345911-45345930 | Msa0683000:intron | 25.0% |
| ! | ACAAATTAGTCCATCTATTA+AGG | + | chr4_4:45345935-45345954 | Msa0683000:intron | 25.0% |
| ! | TACGATTAACATACTAACAT+CGG | + | chr4_4:45346008-45346027 | Msa0683000:intron | 25.0% |
| ! | TTCTGTTATAATGAATGATC+CGG | + | chr4_4:45346049-45346068 | Msa0683000:intron | 25.0% |
| ! | GTCCTTCATATAAAAACATT+AGG | + | chr4_4:45346082-45346101 | Msa0683000:intron | 25.0% |
| ! | CCTTCATATAAAAACATTAG+GGG | + | chr4_4:45346084-45346103 | Msa0683000:intron | 25.0% |
| ! | AAATTAGTAAACACCCAATT+TGG | - | chr4_4:45346171-45346190 | None:intergenic | 25.0% |
| !!! | GTTGTGTTTTGATCTAATTT+AGG | + | chr4_4:45346247-45346266 | Msa0683000:intron | 25.0% |
| ! | GATTATATGTATGTGATTCT+AGG | - | chr4_4:45346432-45346451 | None:intergenic | 25.0% |
| ! | CATTGTCTCTTTAATACAAA+CGG | + | chr4_4:45346545-45346564 | Msa0683000:intron | 25.0% |
| !!! | ATTTTGGAATATTGATAACG+TGG | + | chr4_4:45346607-45346626 | Msa0683000:intron | 25.0% |
| ! | TACAATTTCAAAGACCAAAT+TGG | + | chr4_4:45346651-45346670 | Msa0683000:intron | 25.0% |
| ! | TTACTCTACTTTACTTTGTT+TGG | + | chr4_4:45346682-45346701 | Msa0683000:intron | 25.0% |
| ! | AATTTGTGTAATACTGCAAA+AGG | - | chr4_4:45346924-45346943 | None:intergenic | 25.0% |
| ! | CAAATTGAATGATATGGAAT+AGG | + | chr4_4:45346938-45346957 | Msa0683000:intron | 25.0% |
| !!! | AGTATTTTTGTTTCTGTTCA+TGG | - | chr4_4:45347322-45347341 | None:intergenic | 25.0% |
| ! | GAATTACACAACATTAAACT+AGG | - | chr4_4:45347371-45347390 | None:intergenic | 25.0% |
| !! | TATTTTCCAGCTATAAACTA+AGG | - | chr4_4:45348316-45348335 | None:intergenic | 25.0% |
| ! | GTAATAAAATGATTTATCGG+TGG | - | chr4_4:45348381-45348400 | None:intergenic | 25.0% |
| ! | TAATCTTTATATTGCTCGTT+TGG | + | chr4_4:45348707-45348726 | Msa0683000:intron | 25.0% |
| ! | AAAATAAGTGGAAGATTAAG+AGG | - | chr4_4:45348854-45348873 | None:intergenic | 25.0% |
| !!! | ATTTTGGAAAATTATGCAAC+TGG | - | chr4_4:45349172-45349191 | None:intergenic | 25.0% |
| ! | CCTGAACAAAAAGAAAATAA+TGG | - | chr4_4:45349300-45349319 | None:intergenic | 25.0% |
| !! | CCATTATTTTCTTTTTGTTC+AGG | + | chr4_4:45349297-45349316 | Msa0683000:intron | 25.0% |
| ! | TTTATACAGGTTCATTTCAT+CGG | + | chr4_4:45349465-45349484 | Msa0683000:intron | 25.0% |
| !! | TTCATTGTCAATTGATCTTT+TGG | + | chr4_4:45349545-45349564 | Msa0683000:intron | 25.0% |
| ! | AACAATAAGAAACAGATTTG+AGG | - | chr4_4:45349759-45349778 | None:intergenic | 25.0% |
| ! | GAAAATGTAAACATCATTCT+TGG | + | chr4_4:45349822-45349841 | Msa0683000:intron | 25.0% |
| ! | CCTTATCTTGTCTAATAATA+GGG | - | chr4_4:45349885-45349904 | None:intergenic | 25.0% |
| ! | ACCTTATCTTGTCTAATAAT+AGG | - | chr4_4:45349886-45349905 | None:intergenic | 25.0% |
| ! | TTATTAGACAAGATAAGGTT+AGG | + | chr4_4:45349887-45349906 | Msa0683000:intron | 25.0% |
| ! | AAAAAAGAAGAATGGTAACA+AGG | + | chr4_4:45350222-45350241 | Msa0683000:intron | 25.0% |
| !!! | ATCAGACAATTTTGAGATTA+AGG | + | chr4_4:45350253-45350272 | Msa0683000:intron | 25.0% |
| !!! | AATTGCAATTTTGATAACAC+CGG | + | chr4_4:45350366-45350385 | Msa0683000:intron | 25.0% |
| ! | AAAATACCAAATTACAAGAG+TGG | - | chr4_4:45350452-45350471 | None:intergenic | 25.0% |
| ! | ATTAACTTTCATGATTTCGA+GGG | - | chr4_4:45350558-45350577 | None:intergenic | 25.0% |
| ! | TATTAACTTTCATGATTTCG+AGG | - | chr4_4:45350559-45350578 | None:intergenic | 25.0% |
| !!! | GGGATTTTAAAAGACTATTT+TGG | - | chr4_4:45350623-45350642 | None:intergenic | 25.0% |
| !!! | TTACAACTTTGTTTTTGTCA+TGG | + | chr4_4:45350933-45350952 | Msa0683000:intron | 25.0% |
| ! | TGAATAGTATGATGCAAAAA+AGG | - | chr4_4:45351098-45351117 | None:intergenic | 25.0% |
| !! | GGAATCTATTACATTACTTT+TGG | - | chr4_4:45351580-45351599 | None:intergenic | 25.0% |
| CTACTACTAATTTGAAGGAA+AGG | + | chr4_4:45344613-45344632 | Msa0683000:five_prime_UTR | 30.0% | |
| ! | TGATTGTTGATTACTTAGCT+TGG | - | chr4_4:45344875-45344894 | None:intergenic | 30.0% |
| TCTGAAAAGAGTTGAGAAAA+TGG | - | chr4_4:45344945-45344964 | None:intergenic | 30.0% | |
| TAAGATGTTAGAGAAAGTAG+TGG | - | chr4_4:45345054-45345073 | None:intergenic | 30.0% | |
| !!! | GTCAATCTTATTTTTGACCA+AGG | - | chr4_4:45345276-45345295 | None:intergenic | 30.0% |
| TTGAAATTCAGTGACTTTCA+TGG | + | chr4_4:45345404-45345423 | Msa0683000:intron | 30.0% | |
| TTTCTCTTTCACTAAGGTTA+TGG | - | chr4_4:45345441-45345460 | None:intergenic | 30.0% | |
| GTATCATTTCTCTTTCACTA+AGG | - | chr4_4:45345447-45345466 | None:intergenic | 30.0% | |
| ! | CTATTTTCTATCAACTTGGT+TGG | + | chr4_4:45345641-45345660 | Msa0683000:intron | 30.0% |
| TCACACAAATTATTTCCCAA+AGG | + | chr4_4:45345773-45345792 | Msa0683000:intron | 30.0% | |
| ! | TTGAAAATGACAGACTAGTT+TGG | - | chr4_4:45345908-45345927 | None:intergenic | 30.0% |
| !!! | CTAGTCTGTCATTTTCAAAT+TGG | + | chr4_4:45345910-45345929 | Msa0683000:intron | 30.0% |
| !!! | AGTCTGTCATTTTCAAATTG+GGG | + | chr4_4:45345912-45345931 | Msa0683000:intron | 30.0% |
| TCCATCTATTAAGGAGTTAA+AGG | + | chr4_4:45345944-45345963 | Msa0683000:intron | 30.0% | |
| CCATCTATTAAGGAGTTAAA+GGG | + | chr4_4:45345945-45345964 | Msa0683000:intron | 30.0% | |
| GGATCATTCATTATAACAGA+AGG | - | chr4_4:45346050-45346069 | None:intergenic | 30.0% | |
| TCTGTTATAATGAATGATCC+GGG | + | chr4_4:45346050-45346069 | Msa0683000:intron | 30.0% | |
| !! | CCCCTAATGTTTTTATATGA+AGG | - | chr4_4:45346087-45346106 | None:intergenic | 30.0% |
| AAAACATTAGGGGATTAACT+TGG | + | chr4_4:45346094-45346113 | Msa0683000:intron | 30.0% | |
| AAACATTAGGGGATTAACTT+GGG | + | chr4_4:45346095-45346114 | Msa0683000:intron | 30.0% | |
| ! | TAATTTAGGATGTTAACCTG+TGG | + | chr4_4:45346261-45346280 | Msa0683000:intron | 30.0% |
| TGATAACATATCCAAACAGA+AGG | - | chr4_4:45346463-45346482 | None:intergenic | 30.0% | |
| AAGAGACAATGACATTATGT+TGG | - | chr4_4:45346536-45346555 | None:intergenic | 30.0% | |
| !! | ATATTGATAACGTGGATGAT+TGG | + | chr4_4:45346615-45346634 | Msa0683000:intron | 30.0% |
| !! | TATTGATAACGTGGATGATT+GGG | + | chr4_4:45346616-45346635 | Msa0683000:intron | 30.0% |
| GAGTAACTAACTATCCAATT+TGG | - | chr4_4:45346668-45346687 | None:intergenic | 30.0% | |
| TTCACTATCTCATAGTATAC+AGG | - | chr4_4:45346791-45346810 | None:intergenic | 30.0% | |
| AGAATGTAGATACTATTTGC+AGG | + | chr4_4:45346859-45346878 | Msa0683000:intron | 30.0% | |
| ATTTCAAATCGTCCTTCTTT+AGG | + | chr4_4:45346968-45346987 | Msa0683000:intron | 30.0% | |
| TAAATCAGAACACCTAAAGA+AGG | - | chr4_4:45346983-45347002 | None:intergenic | 30.0% | |
| CAAATAAGCAGACATAGAAT+TGG | - | chr4_4:45347069-45347088 | None:intergenic | 30.0% | |
| CTTGTATCATTGTATAGCAA+TGG | + | chr4_4:45347120-45347139 | Msa0683000:CDS | 30.0% | |
| TAACCTATGTATCAATCAAC+TGG | + | chr4_4:45347195-45347214 | Msa0683000:CDS | 30.0% | |
| TTACCAGTTGATTGATACAT+AGG | - | chr4_4:45347201-45347220 | None:intergenic | 30.0% | |
| ATCAATCAACTGGTAATTGA+AGG | + | chr4_4:45347205-45347224 | Msa0683000:intron | 30.0% | |
| TCAATCAACTGGTAATTGAA+GGG | + | chr4_4:45347206-45347225 | Msa0683000:intron | 30.0% | |
| ! | CAATTTTTAAACGAGTCTTC+AGG | + | chr4_4:45347258-45347277 | Msa0683000:intron | 30.0% |
| !!! | TTTTTTGTTTAGGTGAGGAA+TGG | + | chr4_4:45347293-45347312 | Msa0683000:intron | 30.0% |
| GAAACAAAAATACTTGCCAA+AGG | + | chr4_4:45347328-45347347 | Msa0683000:CDS | 30.0% | |
| ! | CAACTAGTTATGAGCATTTT+TGG | - | chr4_4:45347462-45347481 | None:intergenic | 30.0% |
| AAAGGAGTTGAAGGAATTAA+AGG | + | chr4_4:45347528-45347547 | Msa0683000:intron | 30.0% | |
| CTATTAATGAGCACAAGAAA+TGG | - | chr4_4:45347648-45347667 | None:intergenic | 30.0% | |
| CTTAACTGTAGACAAACAAA+TGG | - | chr4_4:45347692-45347711 | None:intergenic | 30.0% | |
| AAAACCGGATGTAATAATGT+AGG | + | chr4_4:45348068-45348087 | Msa0683000:intron | 30.0% | |
| TATGCCTACATTATTACATC+CGG | - | chr4_4:45348075-45348094 | None:intergenic | 30.0% | |
| !! | TATCACAAAACTTGTTGTCA+AGG | - | chr4_4:45348242-45348261 | None:intergenic | 30.0% |
| TTGATTCCTTAGTTTATAGC+TGG | + | chr4_4:45348307-45348326 | Msa0683000:intron | 30.0% | |
| ! | AGCTGGAAAATATCCTTTTA+TGG | + | chr4_4:45348324-45348343 | Msa0683000:intron | 30.0% |
| TTCAAGTACACTTCCATAAA+AGG | - | chr4_4:45348340-45348359 | None:intergenic | 30.0% | |
| TAAAATCAAGTGGTTGGAAA+TGG | - | chr4_4:45348552-45348571 | None:intergenic | 30.0% | |
| ATCTTGTCAGTAAAATCAAG+TGG | - | chr4_4:45348562-45348581 | None:intergenic | 30.0% | |
| ! | ACTGACAAGATAGAATTTTG+TGG | + | chr4_4:45348571-45348590 | Msa0683000:intron | 30.0% |
| ! | CTGACAAGATAGAATTTTGT+GGG | + | chr4_4:45348572-45348591 | Msa0683000:intron | 30.0% |
| AAAATGTTCTTGGGAAAGAA+GGG | + | chr4_4:45348636-45348655 | Msa0683000:CDS | 30.0% | |
| ! | TAAGAGAGTAATTTTGCATC+TGG | + | chr4_4:45348784-45348803 | Msa0683000:intron | 30.0% |
| ! | AAATAAACCCTTAATTTGGG+AGG | - | chr4_4:45348899-45348918 | None:intergenic | 30.0% |
| ! | ATAGTCTCACAACAAACTTT+TGG | - | chr4_4:45348943-45348962 | None:intergenic | 30.0% |
| ! | ATGTGTCAATCTAGTGATTT+TGG | - | chr4_4:45349188-45349207 | None:intergenic | 30.0% |
| GATTCACCATACAATACAAA+GGG | - | chr4_4:45349521-45349540 | None:intergenic | 30.0% | |
| AGATTCACCATACAATACAA+AGG | - | chr4_4:45349522-45349541 | None:intergenic | 30.0% | |
| !! | TCAATTGATCTTTTGGTTAC+AGG | + | chr4_4:45349552-45349571 | Msa0683000:intron | 30.0% |
| !! | CAATTGATCTTTTGGTTACA+GGG | + | chr4_4:45349553-45349572 | Msa0683000:intron | 30.0% |
| !! | AATTGATCTTTTGGTTACAG+GGG | + | chr4_4:45349554-45349573 | Msa0683000:intron | 30.0% |
| ATACATCTTTACAGTCTTCA+CGG | + | chr4_4:45349593-45349612 | Msa0683000:CDS | 30.0% | |
| TCGATAATGTTCTTCATTTC+AGG | + | chr4_4:45349673-45349692 | Msa0683000:intron | 30.0% | |
| AATAAGAAACAGATTTGAGG+AGG | - | chr4_4:45349756-45349775 | None:intergenic | 30.0% | |
| CCCTATTATTAGACAAGATA+AGG | + | chr4_4:45349882-45349901 | Msa0683000:intron | 30.0% | |
| CTTCTTAGTATGGAATCAAA+AGG | - | chr4_4:45349975-45349994 | None:intergenic | 30.0% | |
| !! | GAATGAATGTTTTCAAGATC+AGG | + | chr4_4:45350059-45350078 | Msa0683000:intron | 30.0% |
| ! | AGGGTATCATGATCATAAAA+AGG | + | chr4_4:45350103-45350122 | Msa0683000:intron | 30.0% |
| !!! | ATTCTAGGTAATTTTTGGGT+AGG | - | chr4_4:45350139-45350158 | None:intergenic | 30.0% |
| ACCCAAAAATTACCTAGAAT+TGG | + | chr4_4:45350139-45350158 | Msa0683000:intron | 30.0% | |
| ! | CCCAATTCTAGGTAATTTTT+GGG | - | chr4_4:45350143-45350162 | None:intergenic | 30.0% |
| CCCAAAAATTACCTAGAATT+GGG | + | chr4_4:45350140-45350159 | Msa0683000:intron | 30.0% | |
| ! | TCCCAATTCTAGGTAATTTT+TGG | - | chr4_4:45350144-45350163 | None:intergenic | 30.0% |
| AAAAATTACCTAGAATTGGG+AGG | + | chr4_4:45350143-45350162 | Msa0683000:intron | 30.0% | |
| AAAATTACCTAGAATTGGGA+GGG | + | chr4_4:45350144-45350163 | Msa0683000:intron | 30.0% | |
| TAAAACGTAGAATCGTAACA+AGG | + | chr4_4:45350180-45350199 | Msa0683000:intron | 30.0% | |
| !!! | CAATTTTGAGATTAAGGTAC+CGG | + | chr4_4:45350259-45350278 | Msa0683000:intron | 30.0% |
| !! | ATTGCAATTTTGATAACACC+GGG | + | chr4_4:45350367-45350386 | Msa0683000:intron | 30.0% |
| AAAATCAAAGGCTTCCAAAA+AGG | - | chr4_4:45350410-45350429 | None:intergenic | 30.0% | |
| TTGTGTTACATCATGCAAAT+TGG | - | chr4_4:45350879-45350898 | None:intergenic | 30.0% | |
| TTGGCTCATTATAATTCTAG+TGG | + | chr4_4:45351036-45351055 | Msa0683000:intron | 30.0% | |
| TGGCTCATTATAATTCTAGT+GGG | + | chr4_4:45351037-45351056 | Msa0683000:intron | 30.0% | |
| AAATAGTAGAGTTGTTGCAT+TGG | - | chr4_4:45351074-45351093 | None:intergenic | 30.0% | |
| ATACAATGTTTAGGTGGAAA+CGG | + | chr4_4:45351213-45351232 | Msa0683000:CDS | 30.0% | |
| GAGATCAGAAGAATGATTAT+TGG | + | chr4_4:45351309-45351328 | Msa0683000:CDS | 30.0% | |
| AAGCACATACAGATCTAATA+TGG | - | chr4_4:45351463-45351482 | None:intergenic | 30.0% | |
| GATGGAAAAAAAAAAGGTTC+AGG | + | chr4_4:45351532-45351551 | Msa0683000:three_prime_UTR | 30.0% | |
| ! | AGGTCTGAGATTCAATAATT+TGG | + | chr4_4:45351552-45351571 | Msa0683000:three_prime_UTR | 30.0% |
| AACATAAATAACTGTACTGG+AGG | - | chr4_4:45351601-45351620 | None:intergenic | 30.0% | |
| TAGCTGAATCAGATAGTAGT+AGG | - | chr4_4:45344660-45344679 | None:intergenic | 35.0% | |
| !! | TTGATTACTTAGCTTGGTGT+TGG | - | chr4_4:45344869-45344888 | None:intergenic | 35.0% |
| GTTCTAATCATCTTTGGCAA+CGG | - | chr4_4:45344902-45344921 | None:intergenic | 35.0% | |
| TGAGTTAAGTCTTACGAACT+GGG | - | chr4_4:45345304-45345323 | None:intergenic | 35.0% | |
| TTGAGTTAAGTCTTACGAAC+TGG | - | chr4_4:45345305-45345324 | None:intergenic | 35.0% | |
| TTCGTAAGACTTAACTCAAC+TGG | + | chr4_4:45345306-45345325 | Msa0683000:intron | 35.0% | |
| AGACTTAACTCAACTGGTTA+AGG | + | chr4_4:45345312-45345331 | Msa0683000:intron | 35.0% | |
| ATCGAGATCCACTACATTTA+AGG | - | chr4_4:45345512-45345531 | None:intergenic | 35.0% | |
| CCCTTTAACTCCTTAATAGA+TGG | - | chr4_4:45345948-45345967 | None:intergenic | 35.0% | |
| ! | TAGTATTTTTCTCCCTTGTC+TGG | - | chr4_4:45345984-45346003 | None:intergenic | 35.0% |
| CTGTTATAATGAATGATCCG+GGG | + | chr4_4:45346051-45346070 | Msa0683000:intron | 35.0% | |
| AAAGTTGTGAGAGACCAAAT+TGG | + | chr4_4:45346154-45346173 | Msa0683000:intron | 35.0% | |
| AAGTTGTGAGAGACCAAATT+GGG | + | chr4_4:45346155-45346174 | Msa0683000:intron | 35.0% | |
| CATAGTGTAACTGAATATGC+TGG | + | chr4_4:45346225-45346244 | Msa0683000:intron | 35.0% | |
| TGTTAACCTGTGGAAAAGTA+TGG | + | chr4_4:45346271-45346290 | Msa0683000:intron | 35.0% | |
| ! | GTTAACCTGTGGAAAAGTAT+GGG | + | chr4_4:45346272-45346291 | Msa0683000:intron | 35.0% |
| ATGGGAGAATTTAATCTCCA+TGG | + | chr4_4:45346290-45346309 | Msa0683000:intron | 35.0% | |
| TGGGAGAATTTAATCTCCAT+GGG | + | chr4_4:45346291-45346310 | Msa0683000:intron | 35.0% | |
| CTACAATTTCATGACCAACA+TGG | - | chr4_4:45346362-45346381 | None:intergenic | 35.0% | |
| CATGTTGGTCATGAAATTGT+AGG | + | chr4_4:45346360-45346379 | Msa0683000:intron | 35.0% | |
| ATCAAGTTCATCCTTCTGTT+TGG | + | chr4_4:45346449-45346468 | Msa0683000:intron | 35.0% | |
| ACATTATGTTGGCAATGCAT+AGG | - | chr4_4:45346525-45346544 | None:intergenic | 35.0% | |
| !!! | TGCTGCCTTCTTTTTTGTTT+AGG | + | chr4_4:45347283-45347302 | Msa0683000:intron | 35.0% |
| CCTCACCTAAACAAAAAAGA+AGG | - | chr4_4:45347291-45347310 | None:intergenic | 35.0% | |
| !!! | CCTTCTTTTTTGTTTAGGTG+AGG | + | chr4_4:45347288-45347307 | Msa0683000:intron | 35.0% |
| CATTGCACATATCAGCAATA+GGG | - | chr4_4:45347426-45347445 | None:intergenic | 35.0% | |
| ACATTGCACATATCAGCAAT+AGG | - | chr4_4:45347427-45347446 | None:intergenic | 35.0% | |
| CATAACTAGTTGTAGCTTTC+AGG | + | chr4_4:45347470-45347489 | Msa0683000:intron | 35.0% | |
| AATGAGCACAAGAAATGGTT+GGG | - | chr4_4:45347643-45347662 | None:intergenic | 35.0% | |
| TAATGAGCACAAGAAATGGT+TGG | - | chr4_4:45347644-45347663 | None:intergenic | 35.0% | |
| !! | TCAACTTTGAAGCTTATCTC+TGG | + | chr4_4:45347735-45347754 | Msa0683000:intron | 35.0% |
| !! | CAACTTTGAAGCTTATCTCT+GGG | + | chr4_4:45347736-45347755 | Msa0683000:intron | 35.0% |
| !! | AACTTTGAAGCTTATCTCTG+GGG | + | chr4_4:45347737-45347756 | Msa0683000:intron | 35.0% |
| GCAGAAAAGACAAATTCACT+AGG | - | chr4_4:45347857-45347876 | None:intergenic | 35.0% | |
| AACAAGATGTGGTGTACTAA+TGG | + | chr4_4:45347947-45347966 | Msa0683000:CDS | 35.0% | |
| ACAAGATGTGGTGTACTAAT+GGG | + | chr4_4:45347948-45347967 | Msa0683000:CDS | 35.0% | |
| CATACTAATGTTTGAGCAGT+TGG | - | chr4_4:45347974-45347993 | None:intergenic | 35.0% | |
| AAACATGCTTAGCATGGAAA+TGG | - | chr4_4:45348028-45348047 | None:intergenic | 35.0% | |
| TGATTGTGTTGAATTGCATC+AGG | + | chr4_4:45348126-45348145 | Msa0683000:intron | 35.0% | |
| ACTGCATTTATCATCGAGAA+GGG | + | chr4_4:45348193-45348212 | Msa0683000:CDS | 35.0% | |
| ! | GACAAACATCATTGATTGTC+AGG | - | chr4_4:45348434-45348453 | None:intergenic | 35.0% |
| CCCTAGTTTATCCAATTTCT+GGG | - | chr4_4:45348473-45348492 | None:intergenic | 35.0% | |
| CCCAGAAATTGGATAAACTA+GGG | + | chr4_4:45348470-45348489 | Msa0683000:CDS | 35.0% | |
| TCCCTAGTTTATCCAATTTC+TGG | - | chr4_4:45348474-45348493 | None:intergenic | 35.0% | |
| TGTCAGTAAAATCAAGTGGT+TGG | - | chr4_4:45348558-45348577 | None:intergenic | 35.0% | |
| GAAAATGTTCTTGGGAAAGA+AGG | + | chr4_4:45348635-45348654 | Msa0683000:CDS | 35.0% | |
| ! | ACTCTTTTCCTCCCAAATTA+AGG | + | chr4_4:45348888-45348907 | Msa0683000:intron | 35.0% |
| ! | CTCTTTTCCTCCCAAATTAA+GGG | + | chr4_4:45348889-45348908 | Msa0683000:intron | 35.0% |
| GGAAAATTATGCAACTGGAA+AGG | - | chr4_4:45349167-45349186 | None:intergenic | 35.0% | |
| !! | AAAACCACTTTTGCTTTGTC+AGG | + | chr4_4:45349252-45349271 | Msa0683000:intron | 35.0% |
| ACATGACTGCATAATACCAA+GGG | - | chr4_4:45349379-45349398 | None:intergenic | 35.0% | |
| ATAAACTGAAACTCCCCAAT+AGG | - | chr4_4:45349450-45349469 | None:intergenic | 35.0% | |
| !! | TCCTGCTAAATTAGTTTGCA+CGG | + | chr4_4:45349647-45349666 | Msa0683000:intron | 35.0% |
| CTTATGTGTATTCTGTAGCT+CGG | + | chr4_4:45349697-45349716 | Msa0683000:CDS | 35.0% | |
| TTATGTGTATTCTGTAGCTC+GGG | + | chr4_4:45349698-45349717 | Msa0683000:CDS | 35.0% | |
| ATGATAGCATTAGAGAGAGT+TGG | + | chr4_4:45349911-45349930 | Msa0683000:intron | 35.0% | |
| !! | AGTTGGTAGTAGCACAAATT+AGG | + | chr4_4:45349928-45349947 | Msa0683000:intron | 35.0% |
| !! | GTTGGTAGTAGCACAAATTA+GGG | + | chr4_4:45349929-45349948 | Msa0683000:intron | 35.0% |
| CTGATCTACTCTTCTTAGTA+TGG | - | chr4_4:45349985-45350004 | None:intergenic | 35.0% | |
| ACTAAGAAGAGTAGATCAGA+TGG | + | chr4_4:45349986-45350005 | Msa0683000:intron | 35.0% | |
| AAATTACCTAGAATTGGGAG+GGG | + | chr4_4:45350145-45350164 | Msa0683000:intron | 35.0% | |
| TAAAAGACCGCAATTGAAAC+CGG | - | chr4_4:45350281-45350300 | None:intergenic | 35.0% | |
| ! | CGTAAAATCGTGCGATTTTA+CGG | + | chr4_4:45350339-45350358 | Msa0683000:intron | 35.0% |
| !! | TTGCAATTTTGATAACACCG+GGG | + | chr4_4:45350368-45350387 | Msa0683000:intron | 35.0% |
| GCTTTCTTAATAATTCTCCC+CGG | - | chr4_4:45350388-45350407 | None:intergenic | 35.0% | |
| AGTCATCCACTCTTGTAATT+TGG | + | chr4_4:45350443-45350462 | Msa0683000:intron | 35.0% | |
| !! | AAACCATTGATTTCTAAGGG+GGG | - | chr4_4:45350657-45350676 | None:intergenic | 35.0% |
| !! | CAAACCATTGATTTCTAAGG+GGG | - | chr4_4:45350658-45350677 | None:intergenic | 35.0% |
| !! | CCAAACCATTGATTTCTAAG+GGG | - | chr4_4:45350659-45350678 | None:intergenic | 35.0% |
| !! | GCCAAACCATTGATTTCTAA+GGG | - | chr4_4:45350660-45350679 | None:intergenic | 35.0% |
| !! | AGCCAAACCATTGATTTCTA+AGG | - | chr4_4:45350661-45350680 | None:intergenic | 35.0% |
| CACGCAATGCATAAGAAATA+TGG | - | chr4_4:45350788-45350807 | None:intergenic | 35.0% | |
| ! | TTTTTGTGTTTTTCCCCGTT+CGG | + | chr4_4:45350832-45350851 | Msa0683000:intron | 35.0% |
| AACAAAATCAACAAGCCGAA+CGG | - | chr4_4:45350850-45350869 | None:intergenic | 35.0% | |
| !!! | CGGCTTGTTGATTTTGTTTT+TGG | + | chr4_4:45350852-45350871 | Msa0683000:intron | 35.0% |
| ATAATGAGCCAACATGATCT+TGG | - | chr4_4:45351028-45351047 | None:intergenic | 35.0% | |
| !! | TTATAATTCTAGTGGGCTAG+TGG | + | chr4_4:45351044-45351063 | Msa0683000:intron | 35.0% |
| ! | TCTCATGTGCTACTAATTTC+AGG | + | chr4_4:45351131-45351150 | Msa0683000:intron | 35.0% |
| TACTAATTTCAGGATTGTGC+TGG | + | chr4_4:45351141-45351160 | Msa0683000:intron | 35.0% | |
| TTGAAGCAAATCATTCCTCT+TGG | + | chr4_4:45351501-45351520 | Msa0683000:three_prime_UTR | 35.0% | |
| TTCCTCTTGGAAAATGATGA+TGG | + | chr4_4:45351514-45351533 | Msa0683000:three_prime_UTR | 35.0% | |
| ! | TTCCATCATCATTTTCCAAG+AGG | - | chr4_4:45351519-45351538 | None:intergenic | 35.0% |
| TACAGTACCAACAATAGGTA+AGG | - | chr4_4:45351681-45351700 | None:intergenic | 35.0% | |
| ACCTATTGTTGGTACTGTAT+TGG | + | chr4_4:45351682-45351701 | Msa0683000:three_prime_UTR | 35.0% | |
| TCCAATACAGTACCAACAAT+AGG | - | chr4_4:45351686-45351705 | None:intergenic | 35.0% | |
| CAGCGCTACTACTAATTTGA+AGG | + | chr4_4:45344608-45344627 | Msa0683000:five_prime_UTR | 40.0% | |
| !!! | GTGTTTTGGCAGTTGAGATA+AGG | - | chr4_4:45344711-45344730 | None:intergenic | 40.0% |
| ! | ATGGAATGGGTGTAGTGTTT+TGG | - | chr4_4:45344725-45344744 | None:intergenic | 40.0% |
| ATCGAAGAGGAATGAAGTAG+TGG | - | chr4_4:45345011-45345030 | None:intergenic | 40.0% | |
| GAGTTAAGTCTTACGAACTG+GGG | - | chr4_4:45345303-45345322 | None:intergenic | 40.0% | |
| TGGTTAAGGATCGTCAAAGT+TGG | + | chr4_4:45345326-45345345 | Msa0683000:intron | 40.0% | |
| ATCCTTAACCAGTTCGAACT+CGG | - | chr4_4:45345362-45345381 | None:intergenic | 40.0% | |
| AATTCAGTGACTTTCATGGC+AGG | + | chr4_4:45345408-45345427 | Msa0683000:intron | 40.0% | |
| ! | AGATCCACTACATTTAAGGC+GGG | - | chr4_4:45345508-45345527 | None:intergenic | 40.0% |
| GAGATCCACTACATTTAAGG+CGG | - | chr4_4:45345509-45345528 | None:intergenic | 40.0% | |
| AAACTGTCGGGGAACAAATT+GGG | - | chr4_4:45345844-45345863 | None:intergenic | 40.0% | |
| AAAACTGTCGGGGAACAAAT+TGG | - | chr4_4:45345845-45345864 | None:intergenic | 40.0% | |
| ATTAAGGAGTTAAAGGGCCA+AGG | + | chr4_4:45345951-45345970 | Msa0683000:intron | 40.0% | |
| CAAGGTTCAAATCCAGACAA+GGG | + | chr4_4:45345969-45345988 | Msa0683000:intron | 40.0% | |
| ATGAAGGACAAATTAGTCCC+CGG | - | chr4_4:45346071-45346090 | None:intergenic | 40.0% | |
| ! | ATTCTCCCATACTTTTCCAC+AGG | - | chr4_4:45346280-45346299 | None:intergenic | 40.0% |
| TACAGAAAATACGGGAGACT+TGG | - | chr4_4:45346396-45346415 | None:intergenic | 40.0% | |
| CTATGTCTGCTTATTTGCAG+AGG | + | chr4_4:45347072-45347091 | Msa0683000:intron | 40.0% | |
| TGCTTATTTGCAGAGGAGTA+TGG | + | chr4_4:45347079-45347098 | Msa0683000:intron | 40.0% | |
| ! | TTATTTGCAGAGGAGTATGG+AGG | + | chr4_4:45347082-45347101 | Msa0683000:intron | 40.0% |
| ! | TATTTGCAGAGGAGTATGGA+GGG | + | chr4_4:45347083-45347102 | Msa0683000:intron | 40.0% |
| !! | GGATCTGTTGGTCTTTCTTA+TGG | + | chr4_4:45347163-45347182 | Msa0683000:CDS | 40.0% |
| !! | AAACTAGAGTGTCGAACCTT+TGG | - | chr4_4:45347347-45347366 | None:intergenic | 40.0% |
| AACTAGTTGTAGCTTTCAGG+TGG | + | chr4_4:45347473-45347492 | Msa0683000:intron | 40.0% | |
| !! | AGCTCAATTGGTTTGAGCTA+AGG | + | chr4_4:45347502-45347521 | Msa0683000:intron | 40.0% |
| !! | GCTCAATTGGTTTGAGCTAA+GGG | + | chr4_4:45347503-45347522 | Msa0683000:intron | 40.0% |
| TGGTTTGAGCTAAGGGTTAA+AGG | + | chr4_4:45347510-45347529 | Msa0683000:intron | 40.0% | |
| CTAAGGGTTAAAGGAGTTGA+AGG | + | chr4_4:45347519-45347538 | Msa0683000:intron | 40.0% | |
| AAGGACTAGATTTCAAACCC+TGG | + | chr4_4:45347547-45347566 | Msa0683000:intron | 40.0% | |
| TAGATTTCAAACCCTGGTGA+AGG | + | chr4_4:45347553-45347572 | Msa0683000:intron | 40.0% | |
| ! | CAGTATTTTCTCCTTCACCA+GGG | - | chr4_4:45347567-45347586 | None:intergenic | 40.0% |
| ! | TCAGTATTTTCTCCTTCACC+AGG | - | chr4_4:45347568-45347587 | None:intergenic | 40.0% |
| AATTCACTAGGCTAAGTCCT+TGG | - | chr4_4:45347845-45347864 | None:intergenic | 40.0% | |
| ! | GAATTTGTCTTTTCTGCAGC+CGG | + | chr4_4:45347860-45347879 | Msa0683000:intron | 40.0% |
| GATGGGGGATATGTACTTAA+CGG | + | chr4_4:45347923-45347942 | Msa0683000:CDS | 40.0% | |
| ATGGGGGATATGTACTTAAC+GGG | + | chr4_4:45347924-45347943 | Msa0683000:CDS | 40.0% | |
| TACTTAACGGGAACAAGATG+TGG | + | chr4_4:45347936-45347955 | Msa0683000:CDS | 40.0% | |
| CACTGCATTTATCATCGAGA+AGG | + | chr4_4:45348192-45348211 | Msa0683000:CDS | 40.0% | |
| AAGGTTCAGTACAATTACCC+AGG | - | chr4_4:45348223-45348242 | None:intergenic | 40.0% | |
| ATTCAGTACTGCCCAGAAAT+TGG | + | chr4_4:45348459-45348478 | Msa0683000:CDS | 40.0% | |
| GCCCAGAAATTGGATAAACT+AGG | + | chr4_4:45348469-45348488 | Msa0683000:CDS | 40.0% | |
| ! | CTTCGAGAATTGCTTTGTTC+CGG | + | chr4_4:45348610-45348629 | Msa0683000:CDS | 40.0% |
| TTCCGGAGGAAAATGTTCTT+GGG | + | chr4_4:45348627-45348646 | Msa0683000:CDS | 40.0% | |
| ! | TTCCCAAGAACATTTTCCTC+CGG | - | chr4_4:45348632-45348651 | None:intergenic | 40.0% |
| AAGCTGATATGATGCAAGAG+AGG | - | chr4_4:45348986-45349005 | None:intergenic | 40.0% | |
| CATGACTGCATAATACCAAG+GGG | - | chr4_4:45349378-45349397 | None:intergenic | 40.0% | |
| GACATGACTGCATAATACCA+AGG | - | chr4_4:45349380-45349399 | None:intergenic | 40.0% | |
| CTCTTTGTCGAACATAAGGA+AGG | - | chr4_4:45349413-45349432 | None:intergenic | 40.0% | |
| TGCTCTCTTTGTCGAACATA+AGG | - | chr4_4:45349417-45349436 | None:intergenic | 40.0% | |
| TGGGGAGTTTCAGTTTATAC+AGG | + | chr4_4:45349452-45349471 | Msa0683000:CDS | 40.0% | |
| GGTATGAGATTCTAATGCCA+TGG | + | chr4_4:45349614-45349633 | Msa0683000:intron | 40.0% | |
| GTAGCACAAATTAGGGAGTT+TGG | + | chr4_4:45349936-45349955 | Msa0683000:intron | 40.0% | |
| AAGAAGAGTAGATCAGATGG+AGG | + | chr4_4:45349989-45350008 | Msa0683000:intron | 40.0% | |
| AGAAGAGTAGATCAGATGGA+GGG | + | chr4_4:45349990-45350009 | Msa0683000:intron | 40.0% | |
| TCAAGATCAGGATCTTGCTT+AGG | + | chr4_4:45350071-45350090 | Msa0683000:intron | 40.0% | |
| ATCAGGATCTTGCTTAGGAT+TGG | + | chr4_4:45350076-45350095 | Msa0683000:intron | 40.0% | |
| AATTACCTAGAATTGGGAGG+GGG | + | chr4_4:45350146-45350165 | Msa0683000:intron | 40.0% | |
| !! | TAAGGTACCGGTTTCAATTG+CGG | + | chr4_4:45350271-45350290 | Msa0683000:intron | 40.0% |
| AAACGATCTTACTCGTTCCA+TGG | + | chr4_4:45350307-45350326 | Msa0683000:intron | 40.0% | |
| AACGATCTTACTCGTTCCAT+GGG | + | chr4_4:45350308-45350327 | Msa0683000:intron | 40.0% | |
| CCCCTTAGAAATCAATGGTT+TGG | + | chr4_4:45350656-45350675 | Msa0683000:intron | 40.0% | |
| ACAAAATCAACAAGCCGAAC+GGG | - | chr4_4:45350849-45350868 | None:intergenic | 40.0% | |
| AACTTGAGCCAAGATCATGT+TGG | + | chr4_4:45351017-45351036 | Msa0683000:intron | 40.0% | |
| TTGCAGGCGATACAATGTTT+AGG | + | chr4_4:45351204-45351223 | Msa0683000:CDS | 40.0% | |
| TATGTGAACGAGTATCCAAC+CGG | + | chr4_4:45351237-45351256 | Msa0683000:CDS | 40.0% | |
| TCTTCTGATCTCACTTGTTC+CGG | - | chr4_4:45351301-45351320 | None:intergenic | 40.0% | |
| TATTGGACGTGATCTCTTCA+AGG | + | chr4_4:45351326-45351345 | Msa0683000:CDS | 40.0% | |
| AGTTCCAGTCAAAATCCAAG+GGG | - | chr4_4:45351369-45351388 | None:intergenic | 40.0% | |
| CAGTTCCAGTCAAAATCCAA+GGG | - | chr4_4:45351370-45351389 | None:intergenic | 40.0% | |
| TCAGTTCCAGTCAAAATCCA+AGG | - | chr4_4:45351371-45351390 | None:intergenic | 40.0% | |
| TTACAAAGGAATCATCTCCG+AGG | - | chr4_4:45351397-45351416 | None:intergenic | 40.0% | |
| GGCAGTTGAGATAAGGATGA+AGG | - | chr4_4:45344704-45344723 | None:intergenic | 45.0% | |
| GTATCTGAGTGTCATCGAAG+AGG | - | chr4_4:45345024-45345043 | None:intergenic | 45.0% | |
| CTTCGATGACACTCAGATAC+AGG | + | chr4_4:45345024-45345043 | Msa0683000:CDS | 45.0% | |
| TAAGTCTTACGAACTGGGGT+GGG | - | chr4_4:45345299-45345318 | None:intergenic | 45.0% | |
| TTAAGTCTTACGAACTGGGG+TGG | - | chr4_4:45345300-45345319 | None:intergenic | 45.0% | |
| ATCCGAGTTCGAACTGGTTA+AGG | + | chr4_4:45345357-45345376 | Msa0683000:intron | 45.0% | |
| CTTTCCCGCCTTAAATGTAG+TGG | + | chr4_4:45345501-45345520 | Msa0683000:intron | 45.0% | |
| GTGGATCTCGATCTCAGTTT+CGG | + | chr4_4:45345520-45345539 | Msa0683000:intron | 45.0% | |
| ATCTCGATCTCAGTTTCGGA+TGG | + | chr4_4:45345524-45345543 | Msa0683000:intron | 45.0% | |
| ! | ATCAATGTGGGAAGCATGAG+GGG | - | chr4_4:45345754-45345773 | None:intergenic | 45.0% |
| ! | GATCAATGTGGGAAGCATGA+GGG | - | chr4_4:45345755-45345774 | None:intergenic | 45.0% |
| ! | TGATCAATGTGGGAAGCATG+AGG | - | chr4_4:45345756-45345775 | None:intergenic | 45.0% |
| TTGAGCAGCGAGAAAACTGT+CGG | - | chr4_4:45345857-45345876 | None:intergenic | 45.0% | |
| CCTTGTCTGGATTTGAACCT+TGG | - | chr4_4:45345971-45345990 | None:intergenic | 45.0% | |
| CCAAGGTTCAAATCCAGACA+AGG | + | chr4_4:45345968-45345987 | Msa0683000:intron | 45.0% | |
| CACATATCAGCAATAGGGCA+AGG | - | chr4_4:45347421-45347440 | None:intergenic | 45.0% | |
| ! | AGTTGTAGCTTTCAGGTGGT+TGG | + | chr4_4:45347477-45347496 | Msa0683000:intron | 45.0% |
| ! | GTTGTAGCTTTCAGGTGGTT+GGG | + | chr4_4:45347478-45347497 | Msa0683000:intron | 45.0% |
| ! | CTTATCTCTGGGGATCATGT+GGG | + | chr4_4:45347747-45347766 | Msa0683000:CDS | 45.0% |
| CATGCTGACAACATCAGATC+CGG | - | chr4_4:45347882-45347901 | None:intergenic | 45.0% | |
| TGCAAAGCTGATCGTGTAGA+TGG | + | chr4_4:45347905-45347924 | Msa0683000:CDS | 45.0% | |
| GCAAAGCTGATCGTGTAGAT+GGG | + | chr4_4:45347906-45347925 | Msa0683000:CDS | 45.0% | |
| CAAAGCTGATCGTGTAGATG+GGG | + | chr4_4:45347907-45347926 | Msa0683000:CDS | 45.0% | |
| AAAGCTGATCGTGTAGATGG+GGG | + | chr4_4:45347908-45347927 | Msa0683000:CDS | 45.0% | |
| TGCTTAGCATGGAAATGGCA+TGG | - | chr4_4:45348023-45348042 | None:intergenic | 45.0% | |
| TGGGACAAACATGCTTAGCA+TGG | - | chr4_4:45348034-45348053 | None:intergenic | 45.0% | |
| CAAAAACAGACGCAACAGCA+GGG | + | chr4_4:45348158-45348177 | Msa0683000:CDS | 45.0% | |
| TTGGATAAACTAGGGATGCG+AGG | + | chr4_4:45348478-45348497 | Msa0683000:CDS | 45.0% | |
| GTTCCGGAGGAAAATGTTCT+TGG | + | chr4_4:45348626-45348645 | Msa0683000:CDS | 45.0% | |
| GTTCTTGGGAAAGAAGGGAA+AGG | + | chr4_4:45348641-45348660 | Msa0683000:CDS | 45.0% | |
| AGCCACTCACTAAGAACGTA+AGG | + | chr4_4:45349064-45349083 | Msa0683000:intron | 45.0% | |
| GTCCTTACGTTCTTAGTGAG+TGG | - | chr4_4:45349069-45349088 | None:intergenic | 45.0% | |
| GACACCTGACAAAGCAAAAG+TGG | - | chr4_4:45349259-45349278 | None:intergenic | 45.0% | |
| GGAGTCTATGTCATGATGTC+TGG | + | chr4_4:45349318-45349337 | Msa0683000:intron | 45.0% | |
| CTATGTCATGATGTCTGGAC+TGG | + | chr4_4:45349323-45349342 | Msa0683000:CDS | 45.0% | |
| ! | CATGATGTCTGGACTGGATT+TGG | + | chr4_4:45349329-45349348 | Msa0683000:CDS | 45.0% |
| ! | TGTCTGGACTGGATTTGGAA+AGG | + | chr4_4:45349334-45349353 | Msa0683000:CDS | 45.0% |
| !!! | GAAAGGCTTGTTTTAGCAGC+CGG | + | chr4_4:45349351-45349370 | Msa0683000:CDS | 45.0% |
| GTTCGACAAAGAGAGCAGTT+CGG | + | chr4_4:45349420-45349439 | Msa0683000:CDS | 45.0% | |
| ATCGCGCCCTTTGTATTGTA+TGG | + | chr4_4:45349512-45349531 | Msa0683000:intron | 45.0% | |
| AGCAGGAGAAAATAGCACCA+TGG | - | chr4_4:45349634-45349653 | None:intergenic | 45.0% | |
| GCCGTGCAAACTAATTTAGC+AGG | - | chr4_4:45349651-45349670 | None:intergenic | 45.0% | |
| CAACGGAAAAGTTGACCCAA+AGG | + | chr4_4:45349728-45349747 | Msa0683000:CDS | 45.0% | |
| !! | AGATTTGAGGAGGCACCTTT+GGG | - | chr4_4:45349746-45349765 | None:intergenic | 45.0% |
| !! | TGGAGGGTATCCTAATCACT+AGG | + | chr4_4:45350006-45350025 | Msa0683000:intron | 45.0% |
| !! | GGAGGGTATCCTAATCACTA+GGG | + | chr4_4:45350007-45350026 | Msa0683000:intron | 45.0% |
| !! | GAGGGTATCCTAATCACTAG+GGG | + | chr4_4:45350008-45350027 | Msa0683000:intron | 45.0% |
| TTCATCAGCCCCTAGTGATT+AGG | - | chr4_4:45350019-45350038 | None:intergenic | 45.0% | |
| ! | TCTTGCTTAGGATTGGCAAG+AGG | + | chr4_4:45350083-45350102 | Msa0683000:intron | 45.0% |
| ! | CTTGCTTAGGATTGGCAAGA+GGG | + | chr4_4:45350084-45350103 | Msa0683000:intron | 45.0% |
| ! | GATTTCTAAGGGGGGTGTAT+CGG | - | chr4_4:45350649-45350668 | None:intergenic | 45.0% |
| ACACCCCCCTTAGAAATCAA+TGG | + | chr4_4:45350651-45350670 | Msa0683000:intron | 45.0% | |
| ACTAGGTGGAGTCAGATACA+TGG | - | chr4_4:45350725-45350744 | None:intergenic | 45.0% | |
| ATGTATCTGACTCCACCTAG+TGG | + | chr4_4:45350724-45350743 | Msa0683000:intron | 45.0% | |
| TGTATCTGACTCCACCTAGT+GGG | + | chr4_4:45350725-45350744 | Msa0683000:intron | 45.0% | |
| CAACCAAGATTTGTCCCACT+AGG | - | chr4_4:45350742-45350761 | None:intergenic | 45.0% | |
| GGGACAAATCTTGGTTGTTG+TGG | + | chr4_4:45350745-45350764 | Msa0683000:intron | 45.0% | |
| CAAAATCAACAAGCCGAACG+GGG | - | chr4_4:45350848-45350867 | None:intergenic | 45.0% | |
| AACACAAGTACAGTGTGCAG+TGG | + | chr4_4:45350892-45350911 | Msa0683000:intron | 45.0% | |
| ! | AGCAACACAAGTTGCTTTGC+AGG | + | chr4_4:45351188-45351207 | Msa0683000:CDS | 45.0% |
| CAGGCGATACAATGTTTAGG+TGG | + | chr4_4:45351207-45351226 | Msa0683000:CDS | 45.0% | |
| !! | TAGTCCCCTTGGATTTTGAC+TGG | + | chr4_4:45351362-45351381 | Msa0683000:three_prime_UTR | 45.0% |
| TGCAGTGCCTTACCTATTGT+TGG | + | chr4_4:45351671-45351690 | Msa0683000:three_prime_UTR | 45.0% | |
| AAGTCTTACGAACTGGGGTG+GGG | - | chr4_4:45345298-45345317 | None:intergenic | 50.0% | |
| ACCTTCATCCGAGTTCGAAC+TGG | + | chr4_4:45345351-45345370 | Msa0683000:intron | 50.0% | |
| ACCAGTTCGAACTCGGATGA+AGG | - | chr4_4:45345355-45345374 | None:intergenic | 50.0% | |
| TGAGCAGCGAGAAAACTGTC+GGG | - | chr4_4:45345856-45345875 | None:intergenic | 50.0% | |
| GGTCTCTCACAACTTTCTCG+CGG | - | chr4_4:45346150-45346169 | None:intergenic | 50.0% | |
| TACCTGGTGCAGTAATCCCA+TGG | - | chr4_4:45346310-45346329 | None:intergenic | 50.0% | |
| CCAACATGGATGCTCACTCA+AGG | - | chr4_4:45346348-45346367 | None:intergenic | 50.0% | |
| CCTTGAGTGAGCATCCATGT+TGG | + | chr4_4:45346345-45346364 | Msa0683000:intron | 50.0% | |
| ! | GAAGAGATTAGCCGAGCTTC+AGG | + | chr4_4:45347142-45347161 | Msa0683000:CDS | 50.0% |
| GACCAACAGATCCTGAAGCT+CGG | - | chr4_4:45347156-45347175 | None:intergenic | 50.0% | |
| AGGTGGTTGGGTAGCTCAAT+TGG | + | chr4_4:45347490-45347509 | Msa0683000:intron | 50.0% | |
| ! | GCTTATCTCTGGGGATCATG+TGG | + | chr4_4:45347746-45347765 | Msa0683000:intron | 50.0% |
| GCAAAAACAGACGCAACAGC+AGG | + | chr4_4:45348157-45348176 | Msa0683000:CDS | 50.0% | |
| ATCATCGAGAAGGGAATGCC+TGG | + | chr4_4:45348202-45348221 | Msa0683000:CDS | 50.0% | |
| TCATCGAGAAGGGAATGCCT+GGG | + | chr4_4:45348203-45348222 | Msa0683000:CDS | 50.0% | |
| ! | CGAGAATTGCTTTGTTCCGG+AGG | + | chr4_4:45348613-45348632 | Msa0683000:CDS | 50.0% |
| GTTCTTAGTGAGTGGCTGAG+TGG | - | chr4_4:45349061-45349080 | None:intergenic | 50.0% | |
| CTGCATAATACCAAGGGGAC+CGG | - | chr4_4:45349373-45349392 | None:intergenic | 50.0% | |
| AGCAGTTCGGTCGTCCTATT+GGG | + | chr4_4:45349433-45349452 | Msa0683000:CDS | 50.0% | |
| !! | CAGATTTGAGGAGGCACCTT+TGG | - | chr4_4:45349747-45349766 | None:intergenic | 50.0% |
| TCTTACTCGTTCCATGGGAG+TGG | + | chr4_4:45350313-45350332 | Msa0683000:intron | 50.0% | |
| CTTACTCGTTCCATGGGAGT+GGG | + | chr4_4:45350314-45350333 | Msa0683000:intron | 50.0% | |
| TTACTCGTTCCATGGGAGTG+GGG | + | chr4_4:45350315-45350334 | Msa0683000:intron | 50.0% | |
| ! | ATTTTACGACCCCACTCCCA+TGG | - | chr4_4:45350327-45350346 | None:intergenic | 50.0% |
| ! | TAAGGGGGGTGTATCGGATT+GGG | - | chr4_4:45350643-45350662 | None:intergenic | 50.0% |
| CCAAGATTTGTCCCACTAGG+TGG | - | chr4_4:45350739-45350758 | None:intergenic | 50.0% | |
| CCACCTAGTGGGACAAATCT+TGG | + | chr4_4:45350736-45350755 | Msa0683000:intron | 50.0% | |
| GATGCGAAGCTCTACGAGAT+CGG | + | chr4_4:45351273-45351292 | Msa0683000:CDS | 50.0% | |
| ATGCGAAGCTCTACGAGATC+GGG | + | chr4_4:45351274-45351293 | Msa0683000:CDS | 50.0% | |
| CAATGACATGCTAGTCCCCT+TGG | + | chr4_4:45351351-45351370 | Msa0683000:exon | 50.0% | |
| GAGCAGCGAGAAAACTGTCG+GGG | - | chr4_4:45345855-45345874 | None:intergenic | 55.0% | |
| CTCCATGGGATTACTGCACC+AGG | + | chr4_4:45346305-45346324 | Msa0683000:intron | 55.0% | |
| ! | GAGTATGGAGGGCTTGGTCT+AGG | + | chr4_4:45347094-45347113 | Msa0683000:CDS | 55.0% |
| AGCCGAGCTTCAGGATCTGT+TGG | + | chr4_4:45347151-45347170 | Msa0683000:CDS | 55.0% | |
| TGGGGATCATGTGGGAGCTT+TGG | + | chr4_4:45347755-45347774 | Msa0683000:CDS | 55.0% | |
| GACGCAACAGCAGGGTCAAA+AGG | + | chr4_4:45348166-45348185 | Msa0683000:CDS | 55.0% | |
| GAGCAGTTCGGTCGTCCTAT+TGG | + | chr4_4:45349432-45349451 | Msa0683000:CDS | 55.0% | |
| GCAGTTCGGTCGTCCTATTG+GGG | + | chr4_4:45349434-45349453 | Msa0683000:CDS | 55.0% | |
| GTAGCTCGGGACTGTGACAA+CGG | + | chr4_4:45349711-45349730 | Msa0683000:CDS | 55.0% | |
| TGCAACCCCCTCCCAATTCT+AGG | - | chr4_4:45350154-45350173 | None:intergenic | 55.0% | |
| ! | CTAAGGGGGGTGTATCGGAT+TGG | - | chr4_4:45350644-45350663 | None:intergenic | 55.0% |
| CGTAGAGCTTCGCATCTCTG+AGG | - | chr4_4:45351269-45351288 | None:intergenic | 55.0% | |
| TGCGAAGCTCTACGAGATCG+GGG | + | chr4_4:45351275-45351294 | Msa0683000:CDS | 55.0% | |
| TTGACTGGAACTGAGCGCCT+CGG | + | chr4_4:45351377-45351396 | Msa0683000:three_prime_UTR | 55.0% | |
| ! | GCAGAGGAGTATGGAGGGCT+TGG | + | chr4_4:45347088-45347107 | Msa0683000:intron | 60.0% |
| !! | GTTTTAGCAGCCGGTCCCCT+TGG | + | chr4_4:45349360-45349379 | Msa0683000:CDS | 60.0% |
| ! | TCTCTGAGGAGACGACCGGT+TGG | - | chr4_4:45351255-45351274 | None:intergenic | 60.0% |
| ! | CGCATCTCTGAGGAGACGAC+CGG | - | chr4_4:45351259-45351278 | None:intergenic | 60.0% |
| AAGCTCTACGAGATCGGGGC+CGG | + | chr4_4:45351279-45351298 | Msa0683000:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 45344593 | 45351754 | 45344593 | ID=Msa0683000;Name=Msa0683000 |
| chr4_4 | mRNA | 45344593 | 45351754 | 45344593 | ID=Msa0683000-mRNA-1;Parent=Msa0683000;Name=Msa0683000-mRNA-1;_AED=0.12;_eAED=0.12;_QI=318|0.83|0.92|1|1|1|13|398|376 |
| chr4_4 | exon | 45344593 | 45345045 | 45344593 | ID=Msa0683000-mRNA-1:exon:10954;Parent=Msa0683000-mRNA-1 |
| chr4_4 | exon | 45346269 | 45346287 | 45346269 | ID=Msa0683000-mRNA-1:exon:10955;Parent=Msa0683000-mRNA-1 |
| chr4_4 | exon | 45347092 | 45347216 | 45347092 | ID=Msa0683000-mRNA-1:exon:10956;Parent=Msa0683000-mRNA-1 |
| chr4_4 | exon | 45347305 | 45347349 | 45347305 | ID=Msa0683000-mRNA-1:exon:10957;Parent=Msa0683000-mRNA-1 |
| chr4_4 | exon | 45347747 | 45347795 | 45347747 | ID=Msa0683000-mRNA-1:exon:10958;Parent=Msa0683000-mRNA-1 |
| chr4_4 | exon | 45347879 | 45347988 | 45347879 | ID=Msa0683000-mRNA-1:exon:10959;Parent=Msa0683000-mRNA-1 |
| chr4_4 | exon | 45348148 | 45348224 | 45348148 | ID=Msa0683000-mRNA-1:exon:10960;Parent=Msa0683000-mRNA-1 |
| chr4_4 | exon | 45348459 | 45348509 | 45348459 | ID=Msa0683000-mRNA-1:exon:10961;Parent=Msa0683000-mRNA-1 |
| chr4_4 | exon | 45348598 | 45348662 | 45348598 | ID=Msa0683000-mRNA-1:exon:10962;Parent=Msa0683000-mRNA-1 |
| chr4_4 | exon | 45349319 | 45349473 | 45349319 | ID=Msa0683000-mRNA-1:exon:10963;Parent=Msa0683000-mRNA-1 |
| chr4_4 | exon | 45349574 | 45349614 | 45349574 | ID=Msa0683000-mRNA-1:exon:10964;Parent=Msa0683000-mRNA-1 |
| chr4_4 | exon | 45349695 | 45349749 | 45349695 | ID=Msa0683000-mRNA-1:exon:10965;Parent=Msa0683000-mRNA-1 |
| chr4_4 | exon | 45351153 | 45351754 | 45351153 | ID=Msa0683000-mRNA-1:exon:10966;Parent=Msa0683000-mRNA-1 |
| chr4_4 | five_prime_UTR | 45344593 | 45344910 | 45344593 | ID=Msa0683000-mRNA-1:five_prime_utr;Parent=Msa0683000-mRNA-1 |
| chr4_4 | CDS | 45344911 | 45345045 | 45344911 | ID=Msa0683000-mRNA-1:cds;Parent=Msa0683000-mRNA-1 |
| chr4_4 | CDS | 45346269 | 45346287 | 45346269 | ID=Msa0683000-mRNA-1:cds;Parent=Msa0683000-mRNA-1 |
| chr4_4 | CDS | 45347092 | 45347216 | 45347092 | ID=Msa0683000-mRNA-1:cds;Parent=Msa0683000-mRNA-1 |
| chr4_4 | CDS | 45347305 | 45347349 | 45347305 | ID=Msa0683000-mRNA-1:cds;Parent=Msa0683000-mRNA-1 |
| chr4_4 | CDS | 45347747 | 45347795 | 45347747 | ID=Msa0683000-mRNA-1:cds;Parent=Msa0683000-mRNA-1 |
| chr4_4 | CDS | 45347879 | 45347988 | 45347879 | ID=Msa0683000-mRNA-1:cds;Parent=Msa0683000-mRNA-1 |
| chr4_4 | CDS | 45348148 | 45348224 | 45348148 | ID=Msa0683000-mRNA-1:cds;Parent=Msa0683000-mRNA-1 |
| chr4_4 | CDS | 45348459 | 45348509 | 45348459 | ID=Msa0683000-mRNA-1:cds;Parent=Msa0683000-mRNA-1 |
| chr4_4 | CDS | 45348598 | 45348662 | 45348598 | ID=Msa0683000-mRNA-1:cds;Parent=Msa0683000-mRNA-1 |
| chr4_4 | CDS | 45349319 | 45349473 | 45349319 | ID=Msa0683000-mRNA-1:cds;Parent=Msa0683000-mRNA-1 |
| chr4_4 | CDS | 45349574 | 45349614 | 45349574 | ID=Msa0683000-mRNA-1:cds;Parent=Msa0683000-mRNA-1 |
| chr4_4 | CDS | 45349695 | 45349749 | 45349695 | ID=Msa0683000-mRNA-1:cds;Parent=Msa0683000-mRNA-1 |
| chr4_4 | CDS | 45351153 | 45351356 | 45351153 | ID=Msa0683000-mRNA-1:cds;Parent=Msa0683000-mRNA-1 |
| chr4_4 | three_prime_UTR | 45351357 | 45351754 | 45351357 | ID=Msa0683000-mRNA-1:three_prime_utr;Parent=Msa0683000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
