AlfalfaGEDB | Msa0683000

M. sativa cultivar zhongmu-4 / Msa0683000

KEGG: K00253
GO: GO:0000166 GO:0003674 GO:0003824 GO:0003853 GO:0003995 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006139 GO:0006163 GO:0006195 GO:0006520 GO:0006551 GO:0006552 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008470 GO:0009056 GO:0009058 GO:0009063 GO:0009081 GO:0009083 GO:0009109 GO:0009117 GO:0009150 GO:0009154 GO:0009166 GO:0009259 GO:0009261 GO:0009987 GO:0016054 GO:0016491 GO:0016627 GO:0017076 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033869 GO:0033875 GO:0034031 GO:0034032 GO:0034034 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035337 GO:0035383 GO:0035639 GO:0036094 GO:0036115 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044273 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046434 GO:0046483 GO:0046700 GO:0051186 GO:0051187 GO:0055086 GO:0055114 GO:0070013 GO:0071704 GO:0072521 GO:0072523 GO:0097159 GO:0097367 GO:1901135 GO:1901136 GO:1901265 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901568 GO:1901569 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1902189 GO:1902190 GO:1902192 GO:1902195 GO:1902196 GO:1902198
PFAM: PF02771.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0683000	XP_003606450.1	89.209	417	4	2	1	376	1	417	0.0	754

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0683000	sp\|Q75IM9\|IVD_ORYSJ	80.779	385	33	2	33	376	25	409	0.0	634

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0683000	G7JQF7	89.209	417	4	2	1	376	1	417	0.0	754

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0008590	Msa0683000	0.816085	6.631211e-52	-8.615850e-47
Msa0374790	Msa0683000	0.818018	2.439723e-52	-8.615850e-47
Msa0424000	Msa0683000	0.811604	6.443992e-51	-8.615850e-47
Msa0481100	Msa0683000	0.826527	2.582827e-54	-8.615850e-47
Msa0547440	Msa0683000	0.863882	1.812737e-64	-8.615850e-47
Msa0602180	Msa0683000	0.949294	1.701417e-107	-8.615850e-47
Msa0643520	Msa0683000	0.927069	1.963733e-91	-8.615850e-47
Msa0649820	Msa0683000	0.801532	8.612261e-49	-8.615850e-47
Msa0683000	Msa0683030	0.967235	5.337065e-127	-8.615850e-47
Msa0683000	Msa0982380	0.810642	1.041658e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0683000	MtrunA17_Chr4g0029681	89.209	417	4	2	1	376	1	417	0.0	754
Msa0683000	MtrunA17_Chr7g0242641	29.814	322	220	3	52	372	28	344	1.58e-44	157
Msa0683000	MtrunA17_Chr2g0295521	26.736	288	199	6	93	370	519	804	2.02e-21	96.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0683000	AT3G45300.1	86.667	345	33	1	45	376	65	409	0.0	606
Msa0683000	AT3G51840.1	29.193	322	222	3	52	372	106	422	2.80e-42	153
Msa0683000	AT3G06810.1	26.736	288	199	6	93	370	530	815	2.14e-21	96.7
Msa0683000	AT5G65110.1	23.955	359	221	13	68	374	133	491	1.21e-11	66.6
Msa0683000	AT5G65110.2	23.955	359	221	13	68	374	133	491	1.26e-11	66.6

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Find 117 sgRNAs with CRISPR-Local

Find 471 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTTCTTGGGAAAGAA+GGG	0.542799	4_4:+45348636	Msa0683000:CDS
AAAGCTGATCGTGTAGATGG+GGG	0.688332	4_4:+45347908	Msa0683000:CDS
AACAAGATGTGGTGTACTAA+TGG	0.357977	4_4:+45347947	Msa0683000:CDS
AACATAAATAACTGTACTGG+AGG	0.582553	4_4:-45351598	None:intergenic
AACTTTGAAGCTTATCTCTG+GGG	0.593388	4_4:+45347737	Msa0683000:intron
AAGCACATACAGATCTAATA+TGG	0.347321	4_4:-45351460	None:intergenic
AAGCTCTACGAGATCGGGGC+CGG	0.529045	4_4:+45351279	Msa0683000:CDS
AATAGTAAACTAATATGGAA+TGG	0.482151	4_4:-45344736	None:intergenic
ACAAGATGTGGTGTACTAAT+GGG	0.455535	4_4:+45347948	Msa0683000:CDS
ACATGACTGCATAATACCAA+GGG	0.627108	4_4:-45349376	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTACTACTAATTTGAAGGAA+AGG	+	chr4_4:45344613-45344632	Msa0683000:five_prime_UTR	30.0%
TCTGAAAAGAGTTGAGAAAA+TGG	-	chr4_4:45344945-45344964	None:intergenic	30.0%
TAAGATGTTAGAGAAAGTAG+TGG	-	chr4_4:45345054-45345073	None:intergenic	30.0%
TTGAAATTCAGTGACTTTCA+TGG	+	chr4_4:45345404-45345423	Msa0683000:intron	30.0%
TTTCTCTTTCACTAAGGTTA+TGG	-	chr4_4:45345441-45345460	None:intergenic	30.0%
GTATCATTTCTCTTTCACTA+AGG	-	chr4_4:45345447-45345466	None:intergenic	30.0%
TCACACAAATTATTTCCCAA+AGG	+	chr4_4:45345773-45345792	Msa0683000:intron	30.0%
TCCATCTATTAAGGAGTTAA+AGG	+	chr4_4:45345944-45345963	Msa0683000:intron	30.0%
CCATCTATTAAGGAGTTAAA+GGG	+	chr4_4:45345945-45345964	Msa0683000:intron	30.0%
GGATCATTCATTATAACAGA+AGG	-	chr4_4:45346050-45346069	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	45344593	45351754	45344593	ID=Msa0683000;Name=Msa0683000
chr4_4	mRNA	45344593	45351754	45344593	ID=Msa0683000-mRNA-1;Parent=Msa0683000;Name=Msa0683000-mRNA-1;_AED=0.12;_eAED=0.12;_QI=318\|0.83\|0.92\|1\|1\|1\|13\|398\|376
chr4_4	exon	45344593	45345045	45344593	ID=Msa0683000-mRNA-1:exon:10954;Parent=Msa0683000-mRNA-1
chr4_4	exon	45346269	45346287	45346269	ID=Msa0683000-mRNA-1:exon:10955;Parent=Msa0683000-mRNA-1
chr4_4	exon	45347092	45347216	45347092	ID=Msa0683000-mRNA-1:exon:10956;Parent=Msa0683000-mRNA-1
chr4_4	exon	45347305	45347349	45347305	ID=Msa0683000-mRNA-1:exon:10957;Parent=Msa0683000-mRNA-1
chr4_4	exon	45347747	45347795	45347747	ID=Msa0683000-mRNA-1:exon:10958;Parent=Msa0683000-mRNA-1
chr4_4	exon	45347879	45347988	45347879	ID=Msa0683000-mRNA-1:exon:10959;Parent=Msa0683000-mRNA-1
chr4_4	exon	45348148	45348224	45348148	ID=Msa0683000-mRNA-1:exon:10960;Parent=Msa0683000-mRNA-1
chr4_4	exon	45348459	45348509	45348459	ID=Msa0683000-mRNA-1:exon:10961;Parent=Msa0683000-mRNA-1
chr4_4	exon	45348598	45348662	45348598	ID=Msa0683000-mRNA-1:exon:10962;Parent=Msa0683000-mRNA-1
chr4_4	exon	45349319	45349473	45349319	ID=Msa0683000-mRNA-1:exon:10963;Parent=Msa0683000-mRNA-1
chr4_4	exon	45349574	45349614	45349574	ID=Msa0683000-mRNA-1:exon:10964;Parent=Msa0683000-mRNA-1
chr4_4	exon	45349695	45349749	45349695	ID=Msa0683000-mRNA-1:exon:10965;Parent=Msa0683000-mRNA-1
chr4_4	exon	45351153	45351754	45351153	ID=Msa0683000-mRNA-1:exon:10966;Parent=Msa0683000-mRNA-1
chr4_4	five_prime_UTR	45344593	45344910	45344593	ID=Msa0683000-mRNA-1:five_prime_utr;Parent=Msa0683000-mRNA-1
chr4_4	CDS	45344911	45345045	45344911	ID=Msa0683000-mRNA-1:cds;Parent=Msa0683000-mRNA-1
chr4_4	CDS	45346269	45346287	45346269	ID=Msa0683000-mRNA-1:cds;Parent=Msa0683000-mRNA-1
chr4_4	CDS	45347092	45347216	45347092	ID=Msa0683000-mRNA-1:cds;Parent=Msa0683000-mRNA-1
chr4_4	CDS	45347305	45347349	45347305	ID=Msa0683000-mRNA-1:cds;Parent=Msa0683000-mRNA-1
chr4_4	CDS	45347747	45347795	45347747	ID=Msa0683000-mRNA-1:cds;Parent=Msa0683000-mRNA-1
chr4_4	CDS	45347879	45347988	45347879	ID=Msa0683000-mRNA-1:cds;Parent=Msa0683000-mRNA-1
chr4_4	CDS	45348148	45348224	45348148	ID=Msa0683000-mRNA-1:cds;Parent=Msa0683000-mRNA-1
chr4_4	CDS	45348459	45348509	45348459	ID=Msa0683000-mRNA-1:cds;Parent=Msa0683000-mRNA-1
chr4_4	CDS	45348598	45348662	45348598	ID=Msa0683000-mRNA-1:cds;Parent=Msa0683000-mRNA-1
chr4_4	CDS	45349319	45349473	45349319	ID=Msa0683000-mRNA-1:cds;Parent=Msa0683000-mRNA-1
chr4_4	CDS	45349574	45349614	45349574	ID=Msa0683000-mRNA-1:cds;Parent=Msa0683000-mRNA-1
chr4_4	CDS	45349695	45349749	45349695	ID=Msa0683000-mRNA-1:cds;Parent=Msa0683000-mRNA-1
chr4_4	CDS	45351153	45351356	45351153	ID=Msa0683000-mRNA-1:cds;Parent=Msa0683000-mRNA-1
chr4_4	three_prime_UTR	45351357	45351754	45351357	ID=Msa0683000-mRNA-1:three_prime_utr;Parent=Msa0683000-mRNA-1

Gene Sequence

>Msa0683000

ATGATTAGAACAAGAATCAACACAGCACGCACCATTTTCTCAACTCTTTTCAGAACTAATTCTTCTCATTCTCACTATGCTGCTGCTGCTGCTTTTTCCACTACTTCATTCCTCTTCGATGACACTCAGATACAGGATGTTAACCTGTGGAAAAAGGAGTATGGAGGGCTTGGTCTAGGTTACTTGTATCATTGTATAGCAATGGAAGAGATTAGCCGAGCTTCAGGATCTGTTGGTCTTTCTTATGGTGCTCATTCTAACCTATGTATCAATCAACTGGTGAGGAATGGAAGCCATGAACAGAAACAAAAATACTTGCCAAAGCTTATCTCTGGGGATCATGTGGGAGCTTTGGCAATGAGTGAACCAAATTCCGGATCTGATGTTGTCAGCATGAAGTGCAAAGCTGATCGTGTAGATGGGGGATATGTACTTAACGGGAACAAGATGTGGTGTACTAATGGGCCAACTGCTCAAACATTAGTTGTCTATGCAAAAACAGACGCAACAGCAGGGTCAAAAGGAATCACTGCATTTATCATCGAGAAGGGAATGCCTGGATTCAGTACTGCCCAGAAATTGGATAAACTAGGGATGCGAGGAAGTGATACATGTGAGCTAGTCTTCGAGAATTGCTTTGTTCCGGAGGAAAATGTTCTTGGGAAAGAAGGGAAAGGAGTCTATGTCATGATGTCTGGACTGGATTTGGAAAGGCTTGTTTTAGCAGCCGGTCCCCTTGGTATTATGCAGTCATGTCTTGATGTTGTCCTTCCTTATGTTCGACAAAGAGAGCAGTTCGGTCGTCCTATTGGGGAGTTTCAGTTTATACAGGGGAAAGTTGCTGACATGTATACATCTTTACAGTCTTCACGGTCTTATGTGTATTCTGTAGCTCGGGACTGTGACAACGGAAAAGTTGACCCAAAGGATTGTGCTGGAGTTATACTTTGTGCAGCTGAAAGAGCAACACAAGTTGCTTTGCAGGCGATACAATGTTTAGGTGGAAACGGCTATGTGAACGAGTATCCAACCGGTCGTCTCCTCAGAGATGCGAAGCTCTACGAGATCGGGGCCGGAACAAGTGAGATCAGAAGAATGATTATTGGACGTGATCTCTTCAAGGAGCAATGA

Protein sequence

>Msa0683000

MIRTRINTARTIFSTLFRTNSSHSHYAAAAAFSTTSFLFDDTQIQDVNLWKKEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRNGSHEQKQKYLPKLISGDHVGALAMSEPNSGSDVVSMKCKADRVDGGYVLNGNKMWCTNGPTAQTLVVYAKTDATAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGKEGKGVYVMMSGLDLERLVLAAGPLGIMQSCLDVVLPYVRQREQFGRPIGEFQFIQGKVADMYTSLQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYPTGRLLRDAKLYEIGAGTSEIRRMIIGRDLFKEQ*