AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0336310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0336310 MtrunA17_Chr2g0325651 86.563 387 39 1 1 374 2 388 0.0 636
Msa0336310 MtrunA17_Chr2g0325651 42.294 279 128 9 227 502 140 388 2.73e-32 129
Msa0336310 MtrunA17_Chr2g0325651 39.583 288 124 7 328 614 150 388 3.99e-29 119
Msa0336310 MtrunA17_Chr2g0325651 38.245 319 138 11 244 558 125 388 7.88e-26 110
Msa0336310 MtrunA17_Chr2g0325651 37.662 231 92 2 441 619 138 368 6.14e-23 101
Msa0336310 MtrunA17_Chr5g0434741 75.082 305 74 2 1 304 1 304 1.70e-146 426
Msa0336310 MtrunA17_Chr5g0434741 37.500 184 102 4 443 618 126 304 9.02e-14 72.4
Msa0336310 MtrunA17_Chr5g0434741 36.232 207 92 5 328 533 136 303 1.26e-13 72.0
Msa0336310 MtrunA17_Chr2g0325261 72.575 299 81 1 1 299 2 299 1.60e-139 408
Msa0336310 MtrunA17_Chr2g0325261 57.143 84 36 0 481 564 223 306 6.60e-16 79.0
Msa0336310 MtrunA17_Chr2g0325261 39.459 185 99 4 443 619 126 305 1.01e-13 72.4
Msa0336310 MtrunA17_Chr2g0325261 32.692 260 97 8 220 452 98 306 4.11e-12 67.8
Msa0336310 MtrunA17_Chr2g0325341 72.575 299 81 1 1 299 2 299 1.60e-139 408
Msa0336310 MtrunA17_Chr2g0325341 57.143 84 36 0 481 564 223 306 6.60e-16 79.0
Msa0336310 MtrunA17_Chr2g0325341 39.459 185 99 4 443 619 126 305 1.01e-13 72.4
Msa0336310 MtrunA17_Chr2g0325341 32.692 260 97 8 220 452 98 306 4.11e-12 67.8
Msa0336310 MtrunA17_Chr2g0325361 46.988 664 238 11 52 619 42 687 2.33e-135 422
Msa0336310 MtrunA17_Chr2g0325361 52.564 468 143 6 222 619 334 792 1.62e-104 340
Msa0336310 MtrunA17_Chr2g0325361 49.565 345 141 4 222 549 478 806 4.14e-58 211
Msa0336310 MtrunA17_Chr2g0325361 39.752 322 179 5 306 622 151 462 1.89e-34 140
Msa0336310 MtrunA17_Chr2g0325861 44.886 704 226 12 1 619 2 628 1.98e-132 409
Msa0336310 MtrunA17_Chr2g0325861 43.726 263 133 5 209 467 407 658 2.18e-37 149
Msa0336310 MtrunA17_Chr2g0325861 34.465 383 198 7 253 621 135 478 3.78e-31 129
Msa0336310 MtrunA17_Chr2g0325861 36.723 177 104 2 222 390 505 681 4.55e-16 82.0
Msa0336310 MtrunA17_Chr2g0325761 41.654 665 279 10 1 617 1 604 6.62e-112 350
Msa0336310 MtrunA17_Chr2g0325761 39.857 419 204 8 237 620 174 579 1.34e-48 180
Msa0336310 MtrunA17_Chr2g0325761 41.514 383 184 10 248 619 155 508 1.12e-44 169
Msa0336310 MtrunA17_Chr2g0325691 41.643 694 321 13 1 619 1 685 3.93e-110 347
Msa0336310 MtrunA17_Chr2g0325691 45.556 360 160 4 222 558 376 722 6.31e-54 196
Msa0336310 MtrunA17_Chr2g0325691 33.494 415 169 10 124 439 323 729 6.00e-22 100
Msa0336310 MtrunA17_Chr2g0325281 42.994 628 279 16 14 612 5 582 2.25e-102 323
Msa0336310 MtrunA17_Chr2g0325281 43.350 203 94 1 437 618 246 448 2.26e-28 120
Msa0336310 MtrunA17_Chr2g0325281 46.528 144 73 1 478 621 228 367 1.72e-21 99.0
Msa0336310 MtrunA17_Chr2g0325281 42.667 150 76 2 216 362 444 586 1.04e-15 80.5
Msa0336310 MtrunA17_Chr2g0325231 39.148 728 291 15 1 623 2 682 3.56e-102 330
Msa0336310 MtrunA17_Chr2g0325231 35.398 339 116 8 222 459 374 710 2.28e-28 121
Msa0336310 MtrunA17_Chr2g0325661 38.344 652 228 11 1 534 1 596 7.69e-97 316
Msa0336310 MtrunA17_Chr2g0325661 38.866 476 236 12 186 619 121 583 2.04e-50 187
Msa0336310 MtrunA17_Chr2g0325321 41.704 669 233 15 14 614 5 584 4.64e-96 311
Msa0336310 MtrunA17_Chr2g0325321 31.198 484 191 14 232 619 82 519 4.03e-25 110
Msa0336310 MtrunA17_Chr2g0325321 34.202 307 127 8 94 388 374 617 1.59e-13 73.9
Msa0336310 MtrunA17_Chr2g0325641 52.478 343 109 7 265 590 2 307 1.05e-77 250
Msa0336310 MtrunA17_Chr2g0325641 54.741 232 96 2 396 619 1 231 7.54e-56 192
Msa0336310 MtrunA17_Chr2g0325641 43.791 306 111 5 319 565 7 310 5.77e-46 165
Msa0336310 MtrunA17_Chr2g0325641 40.076 262 117 3 212 435 47 306 6.68e-33 129
Msa0336310 MtrunA17_Chr2g0325221 37.368 661 251 20 1 567 1 592 4.85e-77 259
Msa0336310 MtrunA17_Chr2g0325221 42.045 264 133 3 369 618 316 573 8.74e-34 137
Msa0336310 MtrunA17_Chr2g0325221 43.885 139 64 1 492 616 311 449 1.77e-16 83.2
Msa0336310 MtrunA17_Chr2g0325721 39.888 534 182 13 1 428 1 501 2.78e-76 251
Msa0336310 MtrunA17_Chr2g0325721 35.190 395 209 10 234 610 136 501 3.94e-31 127
Msa0336310 MtrunA17_Chr6g0471251 41.980 505 195 10 1 438 2 475 3.68e-72 247
Msa0336310 MtrunA17_Chr6g0471251 42.199 282 122 5 346 619 226 474 9.25e-27 115
Msa0336310 MtrunA17_Chr6g0471251 31.378 392 203 11 196 545 130 497 8.87e-19 90.9
Msa0336310 MtrunA17_Chr2g0325711 38.339 566 241 9 42 565 57 556 4.22e-71 245
Msa0336310 MtrunA17_Chr2g0325711 36.313 358 183 8 306 623 178 530 2.28e-33 136
Msa0336310 MtrunA17_Chr5g0434751 54.244 271 88 4 327 561 1 271 7.88e-59 199
Msa0336310 MtrunA17_Chr5g0434751 44.978 229 105 1 410 617 1 229 2.46e-33 129
Msa0336310 MtrunA17_Chr5g0434751 53.571 168 78 0 452 619 1 168 1.04e-31 125
Msa0336310 MtrunA17_Chr5g0434751 42.912 261 126 2 380 619 1 259 9.61e-30 119
Msa0336310 MtrunA17_Chr5g0434751 40.928 237 107 4 220 432 41 268 1.67e-27 112
Msa0336310 MtrunA17_Chr5g0434751 39.700 267 132 3 222 459 1 267 1.43e-25 107
Msa0336310 MtrunA17_Chr2g0325811 35.971 556 280 16 35 565 68 572 1.84e-54 199
Msa0336310 MtrunA17_Chr2g0325811 40.909 242 133 2 391 622 304 545 1.38e-30 127
Msa0336310 MtrunA17_Chr2g0325811 44.167 240 128 2 379 618 322 555 1.09e-29 125
Msa0336310 MtrunA17_Chr2g0325811 32.979 188 95 2 220 383 419 599 1.67e-12 70.9
Msa0336310 MtrunA17_Chr2g0280141 33.010 618 264 12 32 595 48 569 8.76e-52 191
Msa0336310 MtrunA17_Chr2g0280141 37.760 384 223 6 248 619 96 475 2.44e-39 154
Msa0336310 MtrunA17_Chr2g0325351 37.475 491 194 13 1 459 2 411 1.64e-51 189
Msa0336310 MtrunA17_Chr2g0325351 38.225 293 140 8 321 603 154 415 1.73e-24 108
Msa0336310 MtrunA17_Chr2g0325351 39.231 260 128 7 372 619 148 389 3.22e-23 104
Msa0336310 MtrunA17_Chr2g0325351 33.856 319 161 10 248 561 142 415 1.18e-19 93.2
Msa0336310 MtrunA17_Chr7g0235901 41.040 346 153 9 61 391 1 310 9.04e-46 164
Msa0336310 MtrunA17_Chr7g0235901 49.057 265 86 7 372 590 50 311 1.09e-44 161
Msa0336310 MtrunA17_Chr5g0416271 35.903 454 159 13 1 440 1 336 2.64e-45 167
Msa0336310 MtrunA17_Chr5g0416271 52.830 159 75 0 415 573 164 322 2.76e-34 136
Msa0336310 MtrunA17_Chr5g0416271 40.164 244 133 5 372 603 82 324 1.44e-28 119
Msa0336310 MtrunA17_Chr5g0416271 45.000 160 73 3 465 617 145 296 2.41e-21 97.8
Msa0336310 MtrunA17_Chr2g0325781 37.568 370 137 14 1 345 1 301 7.81e-45 161
Msa0336310 MtrunA17_Chr2g0325781 45.930 172 68 4 367 513 131 302 3.71e-23 100
Msa0336310 MtrunA17_Chr2g0333341 35.088 456 176 10 1 345 1 447 3.32e-44 167
Msa0336310 MtrunA17_Chr2g0333341 36.473 414 133 12 44 402 111 449 1.20e-33 136
Msa0336310 MtrunA17_Chr2g0333341 42.424 165 90 2 420 584 290 449 4.51e-19 91.3
Msa0336310 MtrunA17_Chr2g0333341 44.615 130 70 2 483 612 322 449 1.27e-16 83.6
Msa0336310 MtrunA17_Chr2g0333341 34.109 258 141 8 297 542 209 449 1.16e-12 70.9
Msa0336310 MtrunA17_Chr2g0325701 36.771 446 209 12 1 414 1 405 1.26e-42 162
Msa0336310 MtrunA17_Chr2g0325701 34.727 311 168 6 307 615 146 423 6.41e-28 118
Msa0336310 MtrunA17_Chr2g0325701 36.842 247 129 4 397 616 165 411 4.81e-25 109
Msa0336310 MtrunA17_Chr2g0325701 36.224 196 98 4 453 621 151 346 1.27e-11 67.8
Msa0336310 MtrunA17_Chr2g0325621 37.656 401 170 9 12 353 8 387 5.85e-42 161
Msa0336310 MtrunA17_Chr2g0325621 33.138 341 160 7 253 590 112 387 1.91e-17 86.3
Msa0336310 MtrunA17_Chr2g0325621 35.874 223 128 5 410 619 154 374 6.78e-17 84.7
Msa0336310 MtrunA17_Chr2g0325741 45.267 243 102 8 42 275 82 302 1.07e-38 145
Msa0336310 MtrunA17_Chr2g0325611 40.074 272 105 6 139 391 77 309 1.90e-29 123
Msa0336310 MtrunA17_Chr2g0325611 41.748 206 107 4 418 616 122 321 9.01e-24 105
Msa0336310 MtrunA17_Chr2g0325611 34.940 249 120 6 368 590 117 349 3.37e-17 85.5
Msa0336310 MtrunA17_Chr2g0325611 46.575 146 69 2 485 623 144 287 1.42e-16 83.2
Msa0336310 MtrunA17_Chr2g0325611 30.606 330 141 12 50 356 49 313 2.09e-11 67.0
Msa0336310 MtrunA17_Chr2g0325241 41.709 199 113 1 420 615 123 321 7.39e-27 113
Msa0336310 MtrunA17_Chr2g0325241 41.429 210 100 4 378 575 125 323 5.21e-25 108
Msa0336310 MtrunA17_Chr2g0325241 43.017 179 85 2 459 620 120 298 6.88e-25 107
Msa0336310 MtrunA17_Chr2g0325241 36.170 235 107 5 272 493 121 325 2.07e-16 82.0
Msa0336310 MtrunA17_Chr2g0325241 35.169 236 112 5 359 587 120 321 1.68e-15 79.3
Msa0336310 MtrunA17_Chr2g0325241 34.101 217 100 4 216 396 105 314 1.81e-14 75.9
Msa0336310 MtrunA17_Chr2g0325201 42.614 176 79 2 165 339 74 228 1.39e-22 97.1
Msa0336310 MtrunA17_Chr2g0325201 36.316 190 90 5 417 576 40 228 1.15e-13 70.9
Msa0336310 MtrunA17_Chr2g0325751 50.000 116 51 1 504 619 3 111 1.17e-19 86.3
Msa0336310 MtrunA17_Chr2g0325751 46.032 126 61 1 481 606 8 126 1.35e-18 83.2
Msa0336310 MtrunA17_Chr2g0325751 44.800 125 62 1 410 534 7 124 1.32e-17 80.5
Msa0336310 MtrunA17_Chr2g0325751 44.056 143 59 2 420 562 3 124 8.91e-17 78.2
Msa0336310 MtrunA17_Chr2g0325751 44.262 122 59 1 375 496 2 114 4.60e-16 75.9
Msa0336310 MtrunA17_Chr2g0325751 40.000 120 65 1 447 566 2 114 1.57e-13 68.6
Msa0336310 MtrunA17_Chr2g0325751 38.235 136 70 2 217 352 2 123 9.33e-11 60.8
Msa0336310 MtrunA17_Chr2g0325211 37.356 174 91 2 419 592 2 157 3.22e-17 80.1
Msa0336310 MtrunA17_Chr2g0325211 40.506 158 90 1 461 618 2 155 5.23e-16 76.6
Msa0336310 MtrunA17_Chr2g0325211 33.333 174 80 4 376 521 3 168 2.98e-11 63.2
Msa0336310 MtrunA17_Chr2g0325791 40.120 167 74 3 417 582 15 156 3.70e-17 83.2
Msa0336310 MtrunA17_Chr2g0325791 41.463 164 86 3 406 560 14 176 1.53e-16 81.3
Msa0336310 MtrunA17_Chr2g0325791 46.032 126 58 1 485 610 41 156 1.32e-14 75.5
Msa0336310 MtrunA17_Chr2g0325791 39.394 165 66 4 222 383 36 169 1.42e-12 69.3
Msa0336310 MtrunA17_Chr2g0325791 38.710 155 79 3 381 520 24 177 4.97e-12 67.4
Msa0336310 MtrunA17_Chr2g0332961 32.482 274 147 7 42 314 2 238 2.12e-16 81.3
Msa0336310 MtrunA17_Chr2g0332961 40.404 198 91 6 357 533 37 228 1.98e-14 75.1
Msa0336310 MtrunA17_Chr2g0325801 53.247 77 33 1 79 152 50 126 6.11e-16 74.7
Msa0336310 MtrunA17_Chr2g0325731 67.241 58 19 0 452 509 1 58 3.96e-15 70.5
Msa0336310 MtrunA17_Chr2g0325731 60.345 58 23 0 522 579 1 58 9.70e-14 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 104 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTCAATATCTTTCTTTA+TGG 0.077701 2_4:-55701063 None:intergenic
GCACTTTGAGGAACGGTTTA+AGG 0.168819 2_4:+55701460 Msa0336310:CDS
GCAATTGAAAGGACAATTTA+AGG 0.205523 2_4:+55702268 Msa0336310:CDS
GATGCAACAAACAAATTAAT+TGG 0.207790 2_4:+55701248 Msa0336310:CDS
GCCTTCAAGTTGATTCTCTT+TGG 0.237766 2_4:-55701681 None:intergenic
ATTGAAGGAGCATGAATTAA+AGG 0.284018 2_4:+55701706 Msa0336310:CDS
TGCATCAAGATCTTTCTCTT+TGG 0.298026 2_4:-55701231 None:intergenic
TAGATTCCAGTTCCTTCATT+TGG 0.303740 2_4:-55702406 None:intergenic
TGGACTCAAGCTCCTTCATT+TGG 0.314622 2_4:-55701661 None:intergenic
TTGACTCAAACTCCTTCATT+TGG 0.322454 2_4:-55702112 None:intergenic
CTTCGTCTAGTATGTCTAAA+AGG 0.323022 2_4:+55700925 Msa0336310:CDS
TTAATTCATGCTCCTTCAAT+TGG 0.328441 2_4:-55701703 None:intergenic
TTGATAGAAAATCCATCATT+TGG 0.338236 2_4:-55702070 None:intergenic
TCAATACCTGCTGCATCATT+TGG 0.344710 2_4:-55701619 None:intergenic
AGTCGTTTAAGAAATGTAAA+AGG 0.361598 2_4:+55701009 Msa0336310:CDS
GGCAATTGAAAGGACAAGTT+AGG 0.363535 2_4:+55702477 Msa0336310:CDS
TCATCAAACAGCCTCTTAAC+TGG 0.364820 2_4:-55700822 None:intergenic
TGCATGTACCGTGGAACTTC+AGG 0.384841 2_4:+55701208 Msa0336310:CDS
CTGCTAGACTTCCAGTTAAG+AGG 0.392854 2_4:+55700811 Msa0336310:CDS
GAATTTGAAGGCCAAGGAAC+TGG 0.393650 2_4:+55702605 Msa0336310:CDS
GGAATTTGAAGGTGAATTGA+AGG 0.408101 2_4:+55701974 Msa0336310:CDS
TCAAAGTCTTGACAAGAAAC+AGG 0.417784 2_4:-55700753 None:intergenic
GAATCTAAGAAGAAGCATTT+CGG 0.423186 2_4:+55701752 Msa0336310:CDS
TGAAGGCCAAATGAAGGAAC+TGG 0.424379 2_4:+55702400 Msa0336310:CDS
AAAAGTTGAAGTGAAGAAAG+AGG 0.426071 2_4:+55701157 Msa0336310:CDS
TTGATTCATGCTCCTTCGCT+CGG 0.428334 2_4:-55702364 None:intergenic
GGAATTTGAATGCCAAATGA+TGG 0.430842 2_4:+55702058 Msa0336310:CDS
TCTGATACGCCAACAATTTG+TGG 0.440814 2_4:+55700702 Msa0336310:CDS
TTGATTCATGCTCCTTCACT+CGG 0.444211 2_4:-55702154 None:intergenic
TTGATTCATGCTCCTTCACT+CGG 0.444211 2_4:-55702574 None:intergenic
TGAGGAACGGTTTAAGGAGC+TGG 0.447160 2_4:+55701466 Msa0336310:CDS
GTCTAGTATGTCTAAAAGGC+AGG 0.451554 2_4:+55700929 Msa0336310:CDS
TGAAGATCAAAGGAAGGAAC+TGG 0.456281 2_4:+55702190 Msa0336310:CDS
GTCAAACGAGAAGCACTTTG+AGG 0.466153 2_4:+55701448 Msa0336310:CDS
TCAAAAGATAACAAACTTGA+AGG 0.467231 2_4:+55702005 Msa0336310:CDS
GCAATTTAAAGACCAGGTTA+AGG 0.467484 2_4:+55701376 Msa0336310:CDS
TCTAAAGAGAAGCAATTTGA+TGG 0.470278 2_4:+55702509 Msa0336310:CDS
TCTAAAGAGAAGCAATTTGT+TGG 0.477580 2_4:+55702299 Msa0336310:CDS
AGAGAGAATTTGAAGATCAA+AGG 0.479440 2_4:+55702180 Msa0336310:CDS
TCCAAAGAGAATCAACTTGA+AGG 0.480104 2_4:+55701680 Msa0336310:CDS
CTCTTTGGCCTGAAGTTCCA+CGG 0.482562 2_4:-55701216 None:intergenic
GAAGGACGAGCAATGGAGCT+AGG 0.495539 2_4:+55701551 Msa0336310:CDS
TCACCACCACCACAAATTGT+TGG 0.495698 2_4:-55700711 None:intergenic
AGAGATGCAACATGAAGGTT+CGG 0.496357 2_4:+55701580 Msa0336310:CDS
TTGACTCAAGTTCCTTAACC+TGG 0.496862 2_4:-55701388 None:intergenic
AGAATTTGAAGGCCAAATGA+AGG 0.500127 2_4:+55702394 Msa0336310:CDS
GAGAGAGAATTTGAAGGCCA+AGG 0.505466 2_4:+55702599 Msa0336310:CDS
TCAAAAGAGAGAGAATTTGA+AGG 0.507245 2_4:+55702383 Msa0336310:CDS
TCAAAAGAGAGAGAATTTGA+AGG 0.507245 2_4:+55702593 Msa0336310:CDS
GGAACTTGAAGGACGAGCAA+TGG 0.514924 2_4:+55701544 Msa0336310:CDS
TGTGAAAGAATTTGAATCAA+AGG 0.523232 2_4:+55701517 Msa0336310:CDS
TCAACTTGAAGGCCAATTGA+AGG 0.523690 2_4:+55701691 Msa0336310:CDS
GGAGCATGAATTAAAGGAGA+AGG 0.524213 2_4:+55701712 Msa0336310:CDS
GGAGTTTGAATCAAAAGAGA+AGG 0.529370 2_4:+55702037 Msa0336310:CDS
TTAAAGGAGAAGGAATTTGA+AGG 0.539153 2_4:+55701722 Msa0336310:CDS
CAAACTTGAAGGCAAAGTAA+AGG 0.542147 2_4:+55702016 Msa0336310:CDS
AGAATTTGAATCAAAGGAGA+AGG 0.544260 2_4:+55701523 Msa0336310:CDS
GCAATTGAAAGGACAAGTTA+GGG 0.544310 2_4:+55702478 Msa0336310:CDS
GAATAGCTGTGCTCTAATGA+AGG 0.545828 2_4:+55701334 Msa0336310:CDS
TCAAAGGAGAAGGAACTTGA+AGG 0.549197 2_4:+55701533 Msa0336310:CDS
AGAATTTGAAGATCAAAGGA+AGG 0.550611 2_4:+55702184 Msa0336310:CDS
TCATTGCCGTGATCATCATA+TGG 0.558066 2_4:-55700888 None:intergenic
GCATTTCGAAAGCCAAATGA+AGG 0.558177 2_4:+55702100 Msa0336310:CDS
GCAATTTGTTGGCCGTGTGA+AGG 0.559960 2_4:+55702310 Msa0336310:CDS
AAGAGCTCAAAACAAAAGAA+AGG 0.562229 2_4:+55702456 Msa0336310:CDS
GCAATTTGATGGCCGTGTGA+AGG 0.565210 2_4:+55702520 Msa0336310:CDS
GCTGATGAATGAACTTGCAT+TGG 0.569923 2_4:+55700980 Msa0336310:CDS
GCAGAAGCAATTTAAAGACC+AGG 0.570414 2_4:+55701370 Msa0336310:CDS
GCATTGTGAAAGCCAAATGA+AGG 0.570742 2_4:+55701649 Msa0336310:CDS
GAAGCATTTCGGAAGCATGA+TGG 0.571608 2_4:+55701763 Msa0336310:CDS
AAGGACGAGCAATGGAGCTA+GGG 0.574030 2_4:+55701552 Msa0336310:CDS
GCAACATGAAAGCCGAGCGA+AGG 0.576142 2_4:+55702352 Msa0336310:CDS
TGGTGATGATAATGTGAAGA+AGG 0.576558 2_4:+55700728 Msa0336310:CDS
ACTGGAATCTAAAACGAAGC+AGG 0.577734 2_4:+55702418 Msa0336310:CDS
GCAACATGAAAGCCGAGTGA+AGG 0.578492 2_4:+55702562 Msa0336310:CDS
ACAAAAGAAAGGCAATTGAA+AGG 0.581900 2_4:+55702467 Msa0336310:CDS
AGTGAAGAAAGAGGAACTGA+AGG 0.582287 2_4:+55701166 Msa0336310:CDS
GCAACATGAAGGTTCGGTGA+AGG 0.584082 2_4:+55701586 Msa0336310:CDS
ACGAGAAGCACTTTGAGGAA+CGG 0.585238 2_4:+55701453 Msa0336310:CDS
ACAAAAGAGAGGCAATTGAA+AGG 0.586294 2_4:+55702257 Msa0336310:CDS
GCAGTGTGAAAGACGAGTGG+AGG 0.593274 2_4:+55701418 Msa0336310:CDS
ACGCCAACAATTTGTGGTGG+TGG 0.593868 2_4:+55700708 Msa0336310:CDS
TGAATGCCAAATGATGCAGC+AGG 0.601329 2_4:+55701613 Msa0336310:CDS
TCAACTTGAAGGCCGCGTGA+AGG 0.602903 2_4:+55701932 Msa0336310:intron
ACAAAAGAGATGCAACATGA+AGG 0.603273 2_4:+55701575 Msa0336310:CDS
TCAACATGAAAGCCGAGTGA+AGG 0.603798 2_4:+55702142 Msa0336310:CDS
TTGACTCAAACTCCTTCACA+CGG 0.618553 2_4:-55702322 None:intergenic
TTGACTCAAACTCCTTCACA+CGG 0.618553 2_4:-55702532 None:intergenic
TTGATTCAAATTCTTTCACA+CGG 0.620040 2_4:-55701514 None:intergenic
AGGAGCTCAAATCAAGAATG+AGG 0.620661 2_4:+55701786 Msa0336310:CDS
GCGCAACCATATGATGATCA+CGG 0.621089 2_4:+55700882 Msa0336310:CDS
CAGTTGAATAATGGATGTCG+AGG 0.622405 2_4:+55700677 None:intergenic
GATCACGGCAATGACGCAGA+TGG 0.626486 2_4:+55700897 Msa0336310:CDS
GAAGCAGTGTGAAAGACGAG+TGG 0.629119 2_4:+55701415 Msa0336310:CDS
TCTAGTATGTCTAAAAGGCA+GGG 0.633650 2_4:+55700930 Msa0336310:CDS
GTCATTGAAAGAACAAGTTG+AGG 0.638813 2_4:+55701808 Msa0336310:CDS
GCATTTCGGAAGCATGATGG+AGG 0.647166 2_4:+55701766 Msa0336310:CDS
TTGATTCAAATTCCTTCACG+CGG 0.649009 2_4:-55701944 None:intergenic
AGGAGCTCAAAACAAAAGAG+AGG 0.668553 2_4:+55702246 Msa0336310:CDS
TGCAAGTTCATTCATCAGCG+AGG 0.690629 2_4:-55700976 None:intergenic
GAAGGAATTTGAAGGCCGCG+TGG 0.695794 2_4:+55701730 Msa0336310:CDS
GAAGCAGGTTGAAAGCCAAG+TGG 0.696461 2_4:+55702433 Msa0336310:CDS
GATACGCCAACAATTTGTGG+TGG 0.704134 2_4:+55700705 Msa0336310:CDS
GCTTCTTCTTAGATTCCACG+CGG 0.781721 2_4:-55701745 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGTCGTTTAAGAAATGTAAA+AGG + chr2_4:55701009-55701028 Msa0336310:CDS 25.0%
! CTCTTCAATATCTTTCTTTA+TGG - chr2_4:55701066-55701085 None:intergenic 25.0%
! GATGCAACAAACAAATTAAT+TGG + chr2_4:55701248-55701267 Msa0336310:CDS 25.0%
! TTGATTCAAATTCTTTCACA+CGG - chr2_4:55701517-55701536 None:intergenic 25.0%
! TGTGAAAGAATTTGAATCAA+AGG + chr2_4:55701517-55701536 Msa0336310:CDS 25.0%
! GGAATTTGAATCAAAAAAGA+AGG + chr2_4:55701953-55701972 Msa0336310:CDS 25.0%
! TCAAAAAAGAAGGAATTTGA+AGG + chr2_4:55701963-55701982 Msa0336310:CDS 25.0%
! TCAAAAGATAACAAACTTGA+AGG + chr2_4:55702005-55702024 Msa0336310:CDS 25.0%
! TTGATAGAAAATCCATCATT+TGG - chr2_4:55702073-55702092 None:intergenic 25.0%
! AGTCGTTTAAGAAATGTAAA+AGG + chr2_4:55701009-55701028 Msa0336310:CDS 25.0%
! CTCTTCAATATCTTTCTTTA+TGG - chr2_4:55701066-55701085 None:intergenic 25.0%
! GATGCAACAAACAAATTAAT+TGG + chr2_4:55701248-55701267 Msa0336310:CDS 25.0%
! TTGATTCAAATTCTTTCACA+CGG - chr2_4:55701517-55701536 None:intergenic 25.0%
! TGTGAAAGAATTTGAATCAA+AGG + chr2_4:55701517-55701536 Msa0336310:CDS 25.0%
! GGAATTTGAATCAAAAAAGA+AGG + chr2_4:55701953-55701972 Msa0336310:CDS 25.0%
! TCAAAAAAGAAGGAATTTGA+AGG + chr2_4:55701963-55701982 Msa0336310:CDS 25.0%
! TCAAAAGATAACAAACTTGA+AGG + chr2_4:55702005-55702024 Msa0336310:CDS 25.0%
! TTGATAGAAAATCCATCATT+TGG - chr2_4:55702073-55702092 None:intergenic 25.0%
AAAAGTTGAAGTGAAGAAAG+AGG + chr2_4:55701157-55701176 Msa0336310:CDS 30.0%
AGAATTTGAATCAAAGGAGA+AGG + chr2_4:55701523-55701542 Msa0336310:CDS 30.0%
TTAATTCATGCTCCTTCAAT+TGG - chr2_4:55701706-55701725 None:intergenic 30.0%
! ATTGAAGGAGCATGAATTAA+AGG + chr2_4:55701706-55701725 Msa0336310:CDS 30.0%
TTAAAGGAGAAGGAATTTGA+AGG + chr2_4:55701722-55701741 Msa0336310:CDS 30.0%
!! GAATCTAAGAAGAAGCATTT+CGG + chr2_4:55701752-55701771 Msa0336310:CDS 30.0%
!! CCTTCACTTGTTTTTCAAAT+TGG - chr2_4:55701895-55701914 None:intergenic 30.0%
CCAATTTGAAAAACAAGTGA+AGG + chr2_4:55701892-55701911 Msa0336310:intron 30.0%
AGAGAGAATTTGAAGATCAA+AGG + chr2_4:55702180-55702199 Msa0336310:CDS 30.0%
AGAATTTGAAGATCAAAGGA+AGG + chr2_4:55702184-55702203 Msa0336310:CDS 30.0%
GCAATTGAAAGGACAATTTA+AGG + chr2_4:55702268-55702287 Msa0336310:CDS 30.0%
TCTAAAGAGAAGCAATTTGT+TGG + chr2_4:55702299-55702318 Msa0336310:CDS 30.0%
TCAAAAGAGAGAGAATTTGA+AGG + chr2_4:55702173-55702192 Msa0336310:CDS 30.0%
AAGAGCTCAAAACAAAAGAA+AGG + chr2_4:55702456-55702475 Msa0336310:CDS 30.0%
ACAAAAGAAAGGCAATTGAA+AGG + chr2_4:55702467-55702486 Msa0336310:CDS 30.0%
TCTAAAGAGAAGCAATTTGA+TGG + chr2_4:55702509-55702528 Msa0336310:CDS 30.0%
TCAAAAGAGAGAGAATTTGA+AGG + chr2_4:55702173-55702192 Msa0336310:CDS 30.0%
AAAAGTTGAAGTGAAGAAAG+AGG + chr2_4:55701157-55701176 Msa0336310:CDS 30.0%
AGAATTTGAATCAAAGGAGA+AGG + chr2_4:55701523-55701542 Msa0336310:CDS 30.0%
TTAATTCATGCTCCTTCAAT+TGG - chr2_4:55701706-55701725 None:intergenic 30.0%
! ATTGAAGGAGCATGAATTAA+AGG + chr2_4:55701706-55701725 Msa0336310:CDS 30.0%
TTAAAGGAGAAGGAATTTGA+AGG + chr2_4:55701722-55701741 Msa0336310:CDS 30.0%
!! GAATCTAAGAAGAAGCATTT+CGG + chr2_4:55701752-55701771 Msa0336310:CDS 30.0%
!! CCTTCACTTGTTTTTCAAAT+TGG - chr2_4:55701895-55701914 None:intergenic 30.0%
CCAATTTGAAAAACAAGTGA+AGG + chr2_4:55701892-55701911 Msa0336310:intron 30.0%
AGAGAGAATTTGAAGATCAA+AGG + chr2_4:55702180-55702199 Msa0336310:CDS 30.0%
AGAATTTGAAGATCAAAGGA+AGG + chr2_4:55702184-55702203 Msa0336310:CDS 30.0%
GCAATTGAAAGGACAATTTA+AGG + chr2_4:55702268-55702287 Msa0336310:CDS 30.0%
TCTAAAGAGAAGCAATTTGT+TGG + chr2_4:55702299-55702318 Msa0336310:CDS 30.0%
TCAAAAGAGAGAGAATTTGA+AGG + chr2_4:55702173-55702192 Msa0336310:CDS 30.0%
AAGAGCTCAAAACAAAAGAA+AGG + chr2_4:55702456-55702475 Msa0336310:CDS 30.0%
ACAAAAGAAAGGCAATTGAA+AGG + chr2_4:55702467-55702486 Msa0336310:CDS 30.0%
TCTAAAGAGAAGCAATTTGA+TGG + chr2_4:55702509-55702528 Msa0336310:CDS 30.0%
TCAAAAGAGAGAGAATTTGA+AGG + chr2_4:55702173-55702192 Msa0336310:CDS 30.0%
! TGGTGATGATAATGTGAAGA+AGG + chr2_4:55700728-55700747 Msa0336310:CDS 35.0%
TCAAAGTCTTGACAAGAAAC+AGG - chr2_4:55700756-55700775 None:intergenic 35.0%
! CTTTTAGACATACTAGACGA+AGG - chr2_4:55700927-55700946 None:intergenic 35.0%
CTTCGTCTAGTATGTCTAAA+AGG + chr2_4:55700925-55700944 Msa0336310:CDS 35.0%
TCTAGTATGTCTAAAAGGCA+GGG + chr2_4:55700930-55700949 Msa0336310:CDS 35.0%
!!! GGTACATGCAGCAATTTTTT+GGG - chr2_4:55701198-55701217 None:intergenic 35.0%
TGCATCAAGATCTTTCTCTT+TGG - chr2_4:55701234-55701253 None:intergenic 35.0%
GCAATTTAAAGACCAGGTTA+AGG + chr2_4:55701376-55701395 Msa0336310:CDS 35.0%
ACAAAAGAGATGCAACATGA+AGG + chr2_4:55701575-55701594 Msa0336310:CDS 35.0%
TCCAAAGAGAATCAACTTGA+AGG + chr2_4:55701680-55701699 Msa0336310:CDS 35.0%
GTCATTGAAAGAACAAGTTG+AGG + chr2_4:55701808-55701827 Msa0336310:CDS 35.0%
TTGATTCAAATTCCTTCACG+CGG - chr2_4:55701947-55701966 None:intergenic 35.0%
GGAATTTGAAGGTGAATTGA+AGG + chr2_4:55701974-55701993 Msa0336310:CDS 35.0%
CAAACTTGAAGGCAAAGTAA+AGG + chr2_4:55702016-55702035 Msa0336310:CDS 35.0%
GGAGTTTGAATCAAAAGAGA+AGG + chr2_4:55702037-55702056 Msa0336310:CDS 35.0%
GGAATTTGAATGCCAAATGA+TGG + chr2_4:55701607-55701626 Msa0336310:CDS 35.0%
TTGACTCAAACTCCTTCATT+TGG - chr2_4:55702115-55702134 None:intergenic 35.0%
ACAAAAGAGAGGCAATTGAA+AGG + chr2_4:55702257-55702276 Msa0336310:CDS 35.0%
AGAATTTGAAGGCCAAATGA+AGG + chr2_4:55702394-55702413 Msa0336310:CDS 35.0%
TAGATTCCAGTTCCTTCATT+TGG - chr2_4:55702409-55702428 None:intergenic 35.0%
GCAATTGAAAGGACAAGTTA+GGG + chr2_4:55702478-55702497 Msa0336310:CDS 35.0%
! TGGTGATGATAATGTGAAGA+AGG + chr2_4:55700728-55700747 Msa0336310:CDS 35.0%
TCAAAGTCTTGACAAGAAAC+AGG - chr2_4:55700756-55700775 None:intergenic 35.0%
! CTTTTAGACATACTAGACGA+AGG - chr2_4:55700927-55700946 None:intergenic 35.0%
CTTCGTCTAGTATGTCTAAA+AGG + chr2_4:55700925-55700944 Msa0336310:CDS 35.0%
TCTAGTATGTCTAAAAGGCA+GGG + chr2_4:55700930-55700949 Msa0336310:CDS 35.0%
!!! GGTACATGCAGCAATTTTTT+GGG - chr2_4:55701198-55701217 None:intergenic 35.0%
TGCATCAAGATCTTTCTCTT+TGG - chr2_4:55701234-55701253 None:intergenic 35.0%
GCAATTTAAAGACCAGGTTA+AGG + chr2_4:55701376-55701395 Msa0336310:CDS 35.0%
ACAAAAGAGATGCAACATGA+AGG + chr2_4:55701575-55701594 Msa0336310:CDS 35.0%
TCCAAAGAGAATCAACTTGA+AGG + chr2_4:55701680-55701699 Msa0336310:CDS 35.0%
GTCATTGAAAGAACAAGTTG+AGG + chr2_4:55701808-55701827 Msa0336310:CDS 35.0%
TTGATTCAAATTCCTTCACG+CGG - chr2_4:55701947-55701966 None:intergenic 35.0%
GGAATTTGAAGGTGAATTGA+AGG + chr2_4:55701974-55701993 Msa0336310:CDS 35.0%
CAAACTTGAAGGCAAAGTAA+AGG + chr2_4:55702016-55702035 Msa0336310:CDS 35.0%
GGAGTTTGAATCAAAAGAGA+AGG + chr2_4:55702037-55702056 Msa0336310:CDS 35.0%
GGAATTTGAATGCCAAATGA+TGG + chr2_4:55701607-55701626 Msa0336310:CDS 35.0%
TTGACTCAAACTCCTTCATT+TGG - chr2_4:55702115-55702134 None:intergenic 35.0%
ACAAAAGAGAGGCAATTGAA+AGG + chr2_4:55702257-55702276 Msa0336310:CDS 35.0%
AGAATTTGAAGGCCAAATGA+AGG + chr2_4:55702394-55702413 Msa0336310:CDS 35.0%
TAGATTCCAGTTCCTTCATT+TGG - chr2_4:55702409-55702428 None:intergenic 35.0%
GCAATTGAAAGGACAAGTTA+GGG + chr2_4:55702478-55702497 Msa0336310:CDS 35.0%
TCTGATACGCCAACAATTTG+TGG + chr2_4:55700702-55700721 Msa0336310:CDS 40.0%
TCATCAAACAGCCTCTTAAC+TGG - chr2_4:55700825-55700844 None:intergenic 40.0%
TCATTGCCGTGATCATCATA+TGG - chr2_4:55700891-55700910 None:intergenic 40.0%
GTCTAGTATGTCTAAAAGGC+AGG + chr2_4:55700929-55700948 Msa0336310:CDS 40.0%
GCTGATGAATGAACTTGCAT+TGG + chr2_4:55700980-55700999 Msa0336310:CDS 40.0%
AGTGAAGAAAGAGGAACTGA+AGG + chr2_4:55701166-55701185 Msa0336310:CDS 40.0%
!!! CGGTACATGCAGCAATTTTT+TGG - chr2_4:55701199-55701218 None:intergenic 40.0%
AAAAATTGCTGCATGTACCG+TGG + chr2_4:55701199-55701218 Msa0336310:CDS 40.0%
GAATAGCTGTGCTCTAATGA+AGG + chr2_4:55701334-55701353 Msa0336310:CDS 40.0%
GCAGAAGCAATTTAAAGACC+AGG + chr2_4:55701370-55701389 Msa0336310:CDS 40.0%
TTGACTCAAGTTCCTTAACC+TGG - chr2_4:55701391-55701410 None:intergenic 40.0%
TCAAAGGAGAAGGAACTTGA+AGG + chr2_4:55701533-55701552 Msa0336310:CDS 40.0%
AGAGATGCAACATGAAGGTT+CGG + chr2_4:55701580-55701599 Msa0336310:CDS 40.0%
TCAATACCTGCTGCATCATT+TGG - chr2_4:55701622-55701641 None:intergenic 40.0%
GCATTGTGAAAGCCAAATGA+AGG + chr2_4:55701649-55701668 Msa0336310:CDS 40.0%
!! GCCTTCAAGTTGATTCTCTT+TGG - chr2_4:55701684-55701703 None:intergenic 40.0%
TCAACTTGAAGGCCAATTGA+AGG + chr2_4:55701691-55701710 Msa0336310:CDS 40.0%
GGAGCATGAATTAAAGGAGA+AGG + chr2_4:55701712-55701731 Msa0336310:CDS 40.0%
AGGAGCTCAAATCAAGAATG+AGG + chr2_4:55701786-55701805 Msa0336310:CDS 40.0%
AGTCAAGAGAGTCAACTTGA+AGG + chr2_4:55701921-55701940 Msa0336310:intron 40.0%
GCATTTCGAAAGCCAAATGA+AGG + chr2_4:55702100-55702119 Msa0336310:CDS 40.0%
TTGATTCATGCTCCTTCACT+CGG - chr2_4:55702157-55702176 None:intergenic 40.0%
TGAAGATCAAAGGAAGGAAC+TGG + chr2_4:55702190-55702209 Msa0336310:CDS 40.0%
!! GAAGCATTTTGAAAGCCAAG+TGG + chr2_4:55702223-55702242 Msa0336310:CDS 40.0%
AGGAGCTCAAAACAAAAGAG+AGG + chr2_4:55702246-55702265 Msa0336310:CDS 40.0%
TTGACTCAAACTCCTTCACA+CGG - chr2_4:55702325-55702344 None:intergenic 40.0%
! ACTGGAATCTAAAACGAAGC+AGG + chr2_4:55702418-55702437 Msa0336310:CDS 40.0%
!!! TTGTTTTGAGCTCTTCCACT+TGG - chr2_4:55702451-55702470 None:intergenic 40.0%
GGCAATTGAAAGGACAAGTT+AGG + chr2_4:55702477-55702496 Msa0336310:CDS 40.0%
TTGACTCAAACTCCTTCACA+CGG - chr2_4:55702325-55702344 None:intergenic 40.0%
TTGATTCATGCTCCTTCACT+CGG - chr2_4:55702157-55702176 None:intergenic 40.0%
TCTGATACGCCAACAATTTG+TGG + chr2_4:55700702-55700721 Msa0336310:CDS 40.0%
TCATCAAACAGCCTCTTAAC+TGG - chr2_4:55700825-55700844 None:intergenic 40.0%
TCATTGCCGTGATCATCATA+TGG - chr2_4:55700891-55700910 None:intergenic 40.0%
GTCTAGTATGTCTAAAAGGC+AGG + chr2_4:55700929-55700948 Msa0336310:CDS 40.0%
GCTGATGAATGAACTTGCAT+TGG + chr2_4:55700980-55700999 Msa0336310:CDS 40.0%
AGTGAAGAAAGAGGAACTGA+AGG + chr2_4:55701166-55701185 Msa0336310:CDS 40.0%
!!! CGGTACATGCAGCAATTTTT+TGG - chr2_4:55701199-55701218 None:intergenic 40.0%
AAAAATTGCTGCATGTACCG+TGG + chr2_4:55701199-55701218 Msa0336310:CDS 40.0%
GAATAGCTGTGCTCTAATGA+AGG + chr2_4:55701334-55701353 Msa0336310:CDS 40.0%
GCAGAAGCAATTTAAAGACC+AGG + chr2_4:55701370-55701389 Msa0336310:CDS 40.0%
TTGACTCAAGTTCCTTAACC+TGG - chr2_4:55701391-55701410 None:intergenic 40.0%
TCAAAGGAGAAGGAACTTGA+AGG + chr2_4:55701533-55701552 Msa0336310:CDS 40.0%
AGAGATGCAACATGAAGGTT+CGG + chr2_4:55701580-55701599 Msa0336310:CDS 40.0%
TCAATACCTGCTGCATCATT+TGG - chr2_4:55701622-55701641 None:intergenic 40.0%
GCATTGTGAAAGCCAAATGA+AGG + chr2_4:55701649-55701668 Msa0336310:CDS 40.0%
!! GCCTTCAAGTTGATTCTCTT+TGG - chr2_4:55701684-55701703 None:intergenic 40.0%
TCAACTTGAAGGCCAATTGA+AGG + chr2_4:55701691-55701710 Msa0336310:CDS 40.0%
GGAGCATGAATTAAAGGAGA+AGG + chr2_4:55701712-55701731 Msa0336310:CDS 40.0%
AGGAGCTCAAATCAAGAATG+AGG + chr2_4:55701786-55701805 Msa0336310:CDS 40.0%
AGTCAAGAGAGTCAACTTGA+AGG + chr2_4:55701921-55701940 Msa0336310:intron 40.0%
GCATTTCGAAAGCCAAATGA+AGG + chr2_4:55702100-55702119 Msa0336310:CDS 40.0%
TTGATTCATGCTCCTTCACT+CGG - chr2_4:55702157-55702176 None:intergenic 40.0%
TGAAGATCAAAGGAAGGAAC+TGG + chr2_4:55702190-55702209 Msa0336310:CDS 40.0%
!! GAAGCATTTTGAAAGCCAAG+TGG + chr2_4:55702223-55702242 Msa0336310:CDS 40.0%
AGGAGCTCAAAACAAAAGAG+AGG + chr2_4:55702246-55702265 Msa0336310:CDS 40.0%
TTGACTCAAACTCCTTCACA+CGG - chr2_4:55702325-55702344 None:intergenic 40.0%
! ACTGGAATCTAAAACGAAGC+AGG + chr2_4:55702418-55702437 Msa0336310:CDS 40.0%
!!! TTGTTTTGAGCTCTTCCACT+TGG - chr2_4:55702451-55702470 None:intergenic 40.0%
GGCAATTGAAAGGACAAGTT+AGG + chr2_4:55702477-55702496 Msa0336310:CDS 40.0%
TTGACTCAAACTCCTTCACA+CGG - chr2_4:55702325-55702344 None:intergenic 40.0%
TTGATTCATGCTCCTTCACT+CGG - chr2_4:55702157-55702176 None:intergenic 40.0%
GATACGCCAACAATTTGTGG+TGG + chr2_4:55700705-55700724 Msa0336310:CDS 45.0%
TCACCACCACCACAAATTGT+TGG - chr2_4:55700714-55700733 None:intergenic 45.0%
CTGCTAGACTTCCAGTTAAG+AGG + chr2_4:55700811-55700830 Msa0336310:CDS 45.0%
GCGCAACCATATGATGATCA+CGG + chr2_4:55700882-55700901 Msa0336310:CDS 45.0%
TGCAAGTTCATTCATCAGCG+AGG - chr2_4:55700979-55700998 None:intergenic 45.0%
!! GTCAAACGAGAAGCACTTTG+AGG + chr2_4:55701448-55701467 Msa0336310:CDS 45.0%
!! ACGAGAAGCACTTTGAGGAA+CGG + chr2_4:55701453-55701472 Msa0336310:CDS 45.0%
! GCACTTTGAGGAACGGTTTA+AGG + chr2_4:55701460-55701479 Msa0336310:CDS 45.0%
TGAATGCCAAATGATGCAGC+AGG + chr2_4:55701613-55701632 Msa0336310:CDS 45.0%
TGGACTCAAGCTCCTTCATT+TGG - chr2_4:55701664-55701683 None:intergenic 45.0%
GCTTCTTCTTAGATTCCACG+CGG - chr2_4:55701748-55701767 None:intergenic 45.0%
! GAAGCATTTCGGAAGCATGA+TGG + chr2_4:55701763-55701782 Msa0336310:CDS 45.0%
TCAACATGAAAGCCGAGTGA+AGG + chr2_4:55702142-55702161 Msa0336310:CDS 45.0%
!! GCATTTTGAAAGCCAAGTGG+AGG + chr2_4:55702226-55702245 Msa0336310:CDS 45.0%
!!! TTGTTTTGAGCTCCTCCACT+TGG - chr2_4:55702241-55702260 None:intergenic 45.0%
TTGATTCATGCTCCTTCGCT+CGG - chr2_4:55702367-55702386 None:intergenic 45.0%
TGAAGGCCAAATGAAGGAAC+TGG + chr2_4:55702400-55702419 Msa0336310:CDS 45.0%
GAGAGAGAATTTGAAGGCCA+AGG + chr2_4:55702389-55702408 Msa0336310:CDS 45.0%
GAATTTGAAGGCCAAGGAAC+TGG + chr2_4:55702605-55702624 Msa0336310:CDS 45.0%
GATACGCCAACAATTTGTGG+TGG + chr2_4:55700705-55700724 Msa0336310:CDS 45.0%
TCACCACCACCACAAATTGT+TGG - chr2_4:55700714-55700733 None:intergenic 45.0%
CTGCTAGACTTCCAGTTAAG+AGG + chr2_4:55700811-55700830 Msa0336310:CDS 45.0%
GCGCAACCATATGATGATCA+CGG + chr2_4:55700882-55700901 Msa0336310:CDS 45.0%
TGCAAGTTCATTCATCAGCG+AGG - chr2_4:55700979-55700998 None:intergenic 45.0%
!! GTCAAACGAGAAGCACTTTG+AGG + chr2_4:55701448-55701467 Msa0336310:CDS 45.0%
!! ACGAGAAGCACTTTGAGGAA+CGG + chr2_4:55701453-55701472 Msa0336310:CDS 45.0%
! GCACTTTGAGGAACGGTTTA+AGG + chr2_4:55701460-55701479 Msa0336310:CDS 45.0%
TGAATGCCAAATGATGCAGC+AGG + chr2_4:55701613-55701632 Msa0336310:CDS 45.0%
TGGACTCAAGCTCCTTCATT+TGG - chr2_4:55701664-55701683 None:intergenic 45.0%
GCTTCTTCTTAGATTCCACG+CGG - chr2_4:55701748-55701767 None:intergenic 45.0%
! GAAGCATTTCGGAAGCATGA+TGG + chr2_4:55701763-55701782 Msa0336310:CDS 45.0%
TCAACATGAAAGCCGAGTGA+AGG + chr2_4:55702142-55702161 Msa0336310:CDS 45.0%
!! GCATTTTGAAAGCCAAGTGG+AGG + chr2_4:55702226-55702245 Msa0336310:CDS 45.0%
!!! TTGTTTTGAGCTCCTCCACT+TGG - chr2_4:55702241-55702260 None:intergenic 45.0%
TTGATTCATGCTCCTTCGCT+CGG - chr2_4:55702367-55702386 None:intergenic 45.0%
TGAAGGCCAAATGAAGGAAC+TGG + chr2_4:55702400-55702419 Msa0336310:CDS 45.0%
GAGAGAGAATTTGAAGGCCA+AGG + chr2_4:55702389-55702408 Msa0336310:CDS 45.0%
GAATTTGAAGGCCAAGGAAC+TGG + chr2_4:55702605-55702624 Msa0336310:CDS 45.0%
ACGCCAACAATTTGTGGTGG+TGG + chr2_4:55700708-55700727 Msa0336310:CDS 50.0%
TGCATGTACCGTGGAACTTC+AGG + chr2_4:55701208-55701227 Msa0336310:CDS 50.0%
CTCTTTGGCCTGAAGTTCCA+CGG - chr2_4:55701219-55701238 None:intergenic 50.0%
GAAGCAGTGTGAAAGACGAG+TGG + chr2_4:55701415-55701434 Msa0336310:CDS 50.0%
TGAGGAACGGTTTAAGGAGC+TGG + chr2_4:55701466-55701485 Msa0336310:CDS 50.0%
GGAACTTGAAGGACGAGCAA+TGG + chr2_4:55701544-55701563 Msa0336310:CDS 50.0%
AAGGACGAGCAATGGAGCTA+GGG + chr2_4:55701552-55701571 Msa0336310:CDS 50.0%
!! GCAACATGAAGGTTCGGTGA+AGG + chr2_4:55701586-55701605 Msa0336310:CDS 50.0%
! GCATTTCGGAAGCATGATGG+AGG + chr2_4:55701766-55701785 Msa0336310:CDS 50.0%
!! GCAATTTGTTGGCCGTGTGA+AGG + chr2_4:55702310-55702329 Msa0336310:CDS 50.0%
! GAAGCAGGTTGAAAGCCAAG+TGG + chr2_4:55702433-55702452 Msa0336310:CDS 50.0%
! GCAATTTGATGGCCGTGTGA+AGG + chr2_4:55702520-55702539 Msa0336310:CDS 50.0%
GCAACATGAAAGCCGAGTGA+AGG + chr2_4:55702562-55702581 Msa0336310:CDS 50.0%
ACGCCAACAATTTGTGGTGG+TGG + chr2_4:55700708-55700727 Msa0336310:CDS 50.0%
TGCATGTACCGTGGAACTTC+AGG + chr2_4:55701208-55701227 Msa0336310:CDS 50.0%
CTCTTTGGCCTGAAGTTCCA+CGG - chr2_4:55701219-55701238 None:intergenic 50.0%
GAAGCAGTGTGAAAGACGAG+TGG + chr2_4:55701415-55701434 Msa0336310:CDS 50.0%
TGAGGAACGGTTTAAGGAGC+TGG + chr2_4:55701466-55701485 Msa0336310:CDS 50.0%
GGAACTTGAAGGACGAGCAA+TGG + chr2_4:55701544-55701563 Msa0336310:CDS 50.0%
AAGGACGAGCAATGGAGCTA+GGG + chr2_4:55701552-55701571 Msa0336310:CDS 50.0%
!! GCAACATGAAGGTTCGGTGA+AGG + chr2_4:55701586-55701605 Msa0336310:CDS 50.0%
! GCATTTCGGAAGCATGATGG+AGG + chr2_4:55701766-55701785 Msa0336310:CDS 50.0%
!! GCAATTTGTTGGCCGTGTGA+AGG + chr2_4:55702310-55702329 Msa0336310:CDS 50.0%
! GAAGCAGGTTGAAAGCCAAG+TGG + chr2_4:55702433-55702452 Msa0336310:CDS 50.0%
! GCAATTTGATGGCCGTGTGA+AGG + chr2_4:55702520-55702539 Msa0336310:CDS 50.0%
GCAACATGAAAGCCGAGTGA+AGG + chr2_4:55702562-55702581 Msa0336310:CDS 50.0%
GATCACGGCAATGACGCAGA+TGG + chr2_4:55700897-55700916 Msa0336310:CDS 55.0%
GCAGTGTGAAAGACGAGTGG+AGG + chr2_4:55701418-55701437 Msa0336310:CDS 55.0%
GAAGGACGAGCAATGGAGCT+AGG + chr2_4:55701551-55701570 Msa0336310:CDS 55.0%
GAAGGAATTTGAAGGCCGCG+TGG + chr2_4:55701730-55701749 Msa0336310:CDS 55.0%
TCAACTTGAAGGCCGCGTGA+AGG + chr2_4:55701932-55701951 Msa0336310:intron 55.0%
GCAACATGAAAGCCGAGCGA+AGG + chr2_4:55702352-55702371 Msa0336310:CDS 55.0%
GATCACGGCAATGACGCAGA+TGG + chr2_4:55700897-55700916 Msa0336310:CDS 55.0%
GCAGTGTGAAAGACGAGTGG+AGG + chr2_4:55701418-55701437 Msa0336310:CDS 55.0%
GAAGGACGAGCAATGGAGCT+AGG + chr2_4:55701551-55701570 Msa0336310:CDS 55.0%
GAAGGAATTTGAAGGCCGCG+TGG + chr2_4:55701730-55701749 Msa0336310:CDS 55.0%
TCAACTTGAAGGCCGCGTGA+AGG + chr2_4:55701932-55701951 Msa0336310:intron 55.0%
GCAACATGAAAGCCGAGCGA+AGG + chr2_4:55702352-55702371 Msa0336310:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 55700687 55702634 55700687 ID=Msa0336310;Name=Msa0336310
chr2_4 mRNA 55700687 55702634 55700687 ID=Msa0336310-mRNA-1;Parent=Msa0336310;Name=Msa0336310-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0|0|1|1|1|2|0|623
chr2_4 exon 55700687 55701866 55700687 ID=Msa0336310-mRNA-1:exon:16939;Parent=Msa0336310-mRNA-1
chr2_4 exon 55701943 55702634 55701943 ID=Msa0336310-mRNA-1:exon:16940;Parent=Msa0336310-mRNA-1
chr2_4 CDS 55700687 55701866 55700687 ID=Msa0336310-mRNA-1:cds;Parent=Msa0336310-mRNA-1
chr2_4 CDS 55701943 55702634 55701943 ID=Msa0336310-mRNA-1:cds;Parent=Msa0336310-mRNA-1
Gene Sequence

>Msa0336310

ATGGATGTCGAGGCTTCTGATACGCCAACAATTTGTGGTGGTGGTGATGATAATGTGAAGAAGGAACCTGTTTCTTGTCAAGACTTTGAATCATGTTTTAGAACATTTAGTAGTAAACATGATTCTGCTAGACTTCCAGTTAAGAGGCTGTTTGATGACAGCGATTCATTCGATATTTCTGTTAAGAAATCAAAAGCGCAACCATATGATGATCACGGCAATGACGCAGATGGTATTCCTTCGTCTAGTATGTCTAAAAGGCAGGGCAAATTTACTAATGAATCATTTTCCTCGCTGATGAATGAACTTGCATTGGCACAAAAGTCGTTTAAGAAATGTAAAAGGAAGAGTCGAGTAGAAAAAGAGAGATTGCAGTCCATAAAGAAAGATATTGAAGAGTGCTTCAAAGAGCTTGAAGATAAGAACAAGCAAGTTAGTTGTGTAAATGAAATTCACAACGAAATGCAGAGAAAAGTTGAAGTGAAGAAAGAGGAACTGAAGGCTCTTTCCCAAAAAATTGCTGCATGTACCGTGGAACTTCAGGCCAAAGAGAAAGATCTTGATGCAACAAACAAATTAATTGGTGAAGAAGCAGAAAAATTAGAGTCGACAAAGAAGAAATCGATAAATATAATATTAGAAATGAAGAATAGCTGTGCTCTAATGAAGGACTCTGAGTCTAAGCAGAAGCAATTTAAAGACCAGGTTAAGGAACTTGAGTCAAAAGAGAAGCAGTGTGAAAGACGAGTGGAGGAGCTTCAGTCAAACGAGAAGCACTTTGAGGAACGGTTTAAGGAGCTGGAGTCAAGAGAGAAGCAGCTTGAAGTCCGTGTGAAAGAATTTGAATCAAAGGAGAAGGAACTTGAAGGACGAGCAATGGAGCTAGGGACAAAAGAGATGCAACATGAAGGTTCGGTGAAGGAATTTGAATGCCAAATGATGCAGCAGGTATTGAAGCAGAAGCATTGTGAAAGCCAAATGAAGGAGCTTGAGTCCAAAGAGAATCAACTTGAAGGCCAATTGAAGGAGCATGAATTAAAGGAGAAGGAATTTGAAGGCCGCGTGGAATCTAAGAAGAAGCATTTCGGAAGCATGATGGAGGAGCTCAAATCAAGAATGAGGTCATTGAAAGAACAAGTTGAGGAACTTGACTCTAAAGAGAAGCGACTTGATCATCAATGCCGCGTGAAGGAATTTGAATCAAAAAAGAAGGAATTTGAAGGTGAATTGAAGGAGTTTGAGTCAAAAGATAACAAACTTGAAGGCAAAGTAAAGGAGTTTGAATCAAAAGAGAAGGAATTTGAATGCCAAATGATGGATTTTCTATCAAAACAGAAGCATTTCGAAAGCCAAATGAAGGAGTTTGAGTCAAAAAAGAATCAACATGAAAGCCGAGTGAAGGAGCATGAATCAAAAGAGAGAGAATTTGAAGATCAAAGGAAGGAACTGGAATCTAAAAAGAAGCATTTTGAAAGCCAAGTGGAGGAGCTCAAAACAAAAGAGAGGCAATTGAAAGGACAATTTAAGGAACTTGAGTCTAAAGAGAAGCAATTTGTTGGCCGTGTGAAGGAGTTTGAGTCAAAAGAGAAGCAACATGAAAGCCGAGCGAAGGAGCATGAATCAAAAGAGAGAGAATTTGAAGGCCAAATGAAGGAACTGGAATCTAAAACGAAGCAGGTTGAAAGCCAAGTGGAAGAGCTCAAAACAAAAGAAAGGCAATTGAAAGGACAAGTTAGGGAACTTGAGTCTAAAGAGAAGCAATTTGATGGCCGTGTGAAGGAGTTTGAGTCAAAAGAGAAGCAACATGAAAGCCGAGTGAAGGAGCATGAATCAAAAGAGAGAGAATTTGAAGGCCAAGGAACTGGAATCTAA

Protein sequence

>Msa0336310

MDVEASDTPTICGGGDDNVKKEPVSCQDFESCFRTFSSKHDSARLPVKRLFDDSDSFDISVKKSKAQPYDDHGNDADGIPSSSMSKRQGKFTNESFSSLMNELALAQKSFKKCKRKSRVEKERLQSIKKDIEECFKELEDKNKQVSCVNEIHNEMQRKVEVKKEELKALSQKIAACTVELQAKEKDLDATNKLIGEEAEKLESTKKKSINIILEMKNSCALMKDSESKQKQFKDQVKELESKEKQCERRVEELQSNEKHFEERFKELESREKQLEVRVKEFESKEKELEGRAMELGTKEMQHEGSVKEFECQMMQQVLKQKHCESQMKELESKENQLEGQLKEHELKEKEFEGRVESKKKHFGSMMEELKSRMRSLKEQVEELDSKEKRLDHQCRVKEFESKKKEFEGELKEFESKDNKLEGKVKEFESKEKEFECQMMDFLSKQKHFESQMKEFESKKNQHESRVKEHESKEREFEDQRKELESKKKHFESQVEELKTKERQLKGQFKELESKEKQFVGRVKEFESKEKQHESRAKEHESKEREFEGQMKELESKTKQVESQVEELKTKERQLKGQVRELESKEKQFDGRVKEFESKEKQHESRVKEHESKEREFEGQGTGI*