Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556230 | GAU19951.1 | 86.957 | 161 | 19 | 2 | 1 | 160 | 1 | 160 | 1.33e-93 | 281 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556230 | sp|Q93YN0|SCO2_ARATH | 56.000 | 150 | 61 | 2 | 10 | 154 | 16 | 165 | 4.09e-49 | 162 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556230 | A0A2Z6LTV8 | 86.957 | 161 | 19 | 2 | 1 | 160 | 1 | 160 | 6.36e-94 | 281 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0081020 | Msa0556230 | -0.801298 | 9.618448e-49 | -8.615850e-47 |
| Msa0104670 | Msa0556230 | -0.803383 | 3.578195e-49 | -8.615850e-47 |
| Msa0168410 | Msa0556230 | 0.806398 | 8.389021e-50 | -8.615850e-47 |
| Msa0403470 | Msa0556230 | 0.812753 | 3.618088e-51 | -8.615850e-47 |
| Msa0416510 | Msa0556230 | -0.832249 | 1.052756e-55 | -8.615850e-47 |
| Msa0437270 | Msa0556230 | -0.818268 | 2.141941e-52 | -8.615850e-47 |
| Msa0271540 | Msa0556230 | -0.811246 | 7.705237e-51 | -8.615850e-47 |
| Msa0288010 | Msa0556230 | 0.817462 | 3.257020e-52 | -8.615850e-47 |
| Msa0349470 | Msa0556230 | -0.817861 | 2.647158e-52 | -8.615850e-47 |
| Msa0515440 | Msa0556230 | 0.802199 | 6.284689e-49 | -8.615850e-47 |
| Msa0556230 | Msa0611540 | 0.888968 | 3.687274e-73 | -8.615850e-47 |
| Msa0556230 | Msa0652180 | -0.801602 | 8.335179e-49 | -8.615850e-47 |
| Msa0556230 | Msa0665530 | 0.820864 | 5.476138e-53 | -8.615850e-47 |
| Msa0556230 | Msa0674480 | -0.808188 | 3.500652e-50 | -8.615850e-47 |
| Msa0556230 | Msa0694740 | -0.817383 | 3.393819e-52 | -8.615850e-47 |
| Msa0556230 | Msa0823540 | -0.810317 | 1.224353e-50 | -8.615850e-47 |
| Msa0556230 | Msa0858070 | -0.805762 | 1.141704e-49 | -8.615850e-47 |
| Msa0556230 | Msa0878220 | -0.823473 | 1.359463e-53 | -8.615850e-47 |
| Msa0556230 | Msa0944020 | -0.817910 | 2.580400e-52 | -8.615850e-47 |
| Msa0556230 | Msa1070540 | -0.803143 | 4.012402e-49 | -8.615850e-47 |
| Msa0556230 | Msa1101240 | -0.803747 | 3.007113e-49 | -8.615850e-47 |
| Msa0556230 | Msa1190100 | 0.812255 | 4.647491e-51 | -8.615850e-47 |
| Msa0556230 | Msa1236440 | -0.803702 | 3.072627e-49 | -8.615850e-47 |
| Msa0556230 | Msa1277670 | -0.810233 | 1.276499e-50 | -8.615850e-47 |
| Msa0556230 | Msa1325410 | 0.815025 | 1.142080e-51 | -8.615850e-47 |
| Msa0556230 | Msa1340200 | -0.823608 | 1.263721e-53 | -8.615850e-47 |
| Msa0556230 | Msa1356600 | 0.818474 | 1.923186e-52 | -8.615850e-47 |
| Msa0556230 | Msa1363820 | 0.843114 | 1.709185e-58 | -8.615850e-47 |
| Msa0556230 | Msa1452710 | -0.816959 | 4.225123e-52 | -8.615850e-47 |
| Msa0556230 | Msa1464090 | -0.808204 | 3.474359e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556230 | MtrunA17_Chr4g0044951 | 65.957 | 235 | 17 | 5 | 1 | 230 | 1 | 177 | 3.71e-97 | 281 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556230 | AT3G19220.1 | 56.000 | 150 | 61 | 2 | 10 | 154 | 16 | 165 | 4.16e-50 | 162 |
Find 91 sgRNAs with CRISPR-Local
Find 293 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAATAATAATATCTCTTT+TGG | 0.163618 | 4_1:+54313288 | None:intergenic |
| TTCTTCTTCTCTGTATGTAT+TGG | 0.265394 | 4_1:-54313392 | None:intergenic |
| TCGGAAAGATATTGATTTAA+TGG | 0.291501 | 4_1:+54317302 | Msa0556230:CDS |
| AGTTGTCAACTTGGAATAAC+TGG | 0.313953 | 4_1:+54317237 | Msa0556230:intron |
| TTGCAAATGCATTCCTTGTA+TGG | 0.315686 | 4_1:+54314360 | Msa0556230:CDS |
| TAGATAGGATACCTCAAGTT+TGG | 0.327979 | 4_1:-54313849 | None:intergenic |
| TGCATTCCTTGTATGGGAAT+TGG | 0.330677 | 4_1:+54314367 | Msa0556230:CDS |
| GTGTAAGATAGATTGAAATT+AGG | 0.357326 | 4_1:-54313502 | None:intergenic |
| AGATAGGATACCTCAAGTTT+GGG | 0.369199 | 4_1:-54313848 | None:intergenic |
| AGGCGTTCATCAACGACTTC+AGG | 0.372761 | 4_1:-54313815 | None:intergenic |
| TTCTACGACGGCCGAGGTGG+TGG | 0.373631 | 4_1:-54313639 | None:intergenic |
| ACGAAATAGAGAAGGATATA+TGG | 0.381212 | 4_1:+54313733 | Msa0556230:CDS |
| ATGTAATGTAATACGTTGAT+AGG | 0.384669 | 4_1:-54314400 | None:intergenic |
| GGAGAAACAGGAGAAGAATC+AGG | 0.384713 | 4_1:-54313794 | None:intergenic |
| GGGCCGTGGGGAAAGGTCTC+CGG | 0.391665 | 4_1:-54313579 | None:intergenic |
| ACAAGACAAGCATACAATTC+AGG | 0.395765 | 4_1:-54317079 | None:intergenic |
| CCGCTGCTAGACGCGCCGGC+GGG | 0.397750 | 4_1:+54313669 | Msa0556230:CDS |
| CGAGGGATAGAGGTGGGCCG+TGG | 0.399101 | 4_1:-54313593 | None:intergenic |
| GTTATAGTAGCTTACATATC+CGG | 0.401921 | 4_1:-54314317 | None:intergenic |
| GAAGGATATATGGTTGATAA+TGG | 0.408638 | 4_1:+54313743 | Msa0556230:CDS |
| ACCACCTCGGCCGTCGTAGA+AGG | 0.411149 | 4_1:+54313641 | Msa0556230:CDS |
| TGAAAGCTAAGGAGAGAAAA+TGG | 0.412578 | 4_1:+54313708 | Msa0556230:CDS |
| TATTGATTTAATGGAGGACT+TGG | 0.415117 | 4_1:+54317311 | Msa0556230:CDS |
| TGGTGGGGAGGGAGAGCGAC+TGG | 0.425439 | 4_1:-54313622 | None:intergenic |
| TTAATGGAGGACTTGGGTAA+TGG | 0.431654 | 4_1:+54317318 | Msa0556230:CDS |
| ATATGCAAAGTGTCTTGCTT+TGG | 0.440861 | 4_1:+54317106 | Msa0556230:CDS |
| TCAACGACTTCAGGAGAAAC+AGG | 0.446064 | 4_1:-54313806 | None:intergenic |
| CAACTTGGAATAACTGGTCT+TGG | 0.457372 | 4_1:+54317243 | Msa0556230:CDS |
| CCCGCCGGCGCGTCTAGCAG+CGG | 0.458625 | 4_1:-54313669 | None:intergenic |
| CTGGAAGAGACGAGGGATAG+AGG | 0.462107 | 4_1:-54313603 | None:intergenic |
| TAGAGGTGGGCCGTGGGGAA+AGG | 0.462906 | 4_1:-54313586 | None:intergenic |
| TTCCGCTACCGTGCTTCTGC+CGG | 0.465937 | 4_1:+54313560 | Msa0556230:CDS |
| CAAGTTTGGGGTCACATTGA+AGG | 0.467284 | 4_1:-54313835 | None:intergenic |
| GTAAAGAGGTGGTTTATGAA+TGG | 0.468333 | 4_1:+54314266 | Msa0556230:CDS |
| AATGCGATAATTTCAGAGAA+AGG | 0.472868 | 4_1:-54313459 | None:intergenic |
| GCCGCTGCTAGACGCGCCGG+CGG | 0.485119 | 4_1:+54313668 | Msa0556230:CDS |
| AGCTTACATATCCGGATCCT+TGG | 0.485700 | 4_1:-54314309 | None:intergenic |
| TCTACGACGGCCGAGGTGGT+GGG | 0.486217 | 4_1:-54313638 | None:intergenic |
| TGTCGTAGCTGCCAAGGATC+CGG | 0.492139 | 4_1:+54314298 | Msa0556230:CDS |
| ATGCGATAATTTCAGAGAAA+GGG | 0.498266 | 4_1:-54313458 | None:intergenic |
| TCAGGGTAAGTCATGGGAAG+TGG | 0.505112 | 4_1:-54313776 | None:intergenic |
| CTACGACGGCCGAGGTGGTG+GGG | 0.506106 | 4_1:-54313637 | None:intergenic |
| GACGGCCGAGGTGGTGGGGA+GGG | 0.506391 | 4_1:-54313633 | None:intergenic |
| CGACGGCCGAGGTGGTGGGG+AGG | 0.506589 | 4_1:-54313634 | None:intergenic |
| GTAAGCTACTATAACAAAAG+AGG | 0.507758 | 4_1:+54314325 | Msa0556230:CDS |
| TAAGTCATGGGAAGTGGAAG+AGG | 0.508061 | 4_1:-54313770 | None:intergenic |
| GGCGCCGCTGCTAGACGCGC+CGG | 0.508225 | 4_1:+54313665 | Msa0556230:CDS |
| TGCAAATGCATTCCTTGTAT+GGG | 0.514891 | 4_1:+54314361 | Msa0556230:CDS |
| GAGGGATAGAGGTGGGCCGT+GGG | 0.518062 | 4_1:-54313592 | None:intergenic |
| CTCCGGCAGAAGCACGGTAG+CGG | 0.523548 | 4_1:-54313562 | None:intergenic |
| CATAAATAAAAGTGATAGCA+TGG | 0.525311 | 4_1:+54313350 | Msa0556230:five_prime_UTR |
| AGCGGCGCCACCTTCTACGA+CGG | 0.531670 | 4_1:-54313651 | None:intergenic |
| GACGCGCCGGCGGGAACGAG+TGG | 0.537435 | 4_1:+54313678 | Msa0556230:CDS |
| TAAGCTACTATAACAAAAGA+GGG | 0.541971 | 4_1:+54314326 | Msa0556230:CDS |
| CTATAACAAAAGAGGGAAAG+AGG | 0.547070 | 4_1:+54314333 | Msa0556230:CDS |
| CGGCGGGAACGAGTGGATGA+AGG | 0.547338 | 4_1:+54313685 | Msa0556230:CDS |
| GAAGAATCAGGGTAAGTCAT+GGG | 0.548546 | 4_1:-54313782 | None:intergenic |
| ATTGATTTAATGGAGGACTT+GGG | 0.552134 | 4_1:+54317312 | Msa0556230:CDS |
| GTTATAGGATTGTAAAGAGG+TGG | 0.562864 | 4_1:+54314255 | Msa0556230:intron |
| GTAATGGAAAACCGTTATGA+TGG | 0.564931 | 4_1:+54317334 | Msa0556230:CDS |
| AAGCACGGTAGCGGAAGATG+AGG | 0.572632 | 4_1:-54313553 | None:intergenic |
| GCCACCTTCTACGACGGCCG+AGG | 0.576103 | 4_1:-54313645 | None:intergenic |
| CTTCATCCACTCGTTCCCGC+CGG | 0.576282 | 4_1:-54313684 | None:intergenic |
| ACCTTCTACGACGGCCGAGG+TGG | 0.577117 | 4_1:-54313642 | None:intergenic |
| GTGGATGAAGGTGAAAGCTA+AGG | 0.585939 | 4_1:+54313697 | Msa0556230:CDS |
| GCATTACCAATTCCCATACA+AGG | 0.590823 | 4_1:-54314373 | None:intergenic |
| ACCTCGGCCGTCGTAGAAGG+TGG | 0.591927 | 4_1:+54313644 | Msa0556230:CDS |
| AGAAGAATCAGGGTAAGTCA+TGG | 0.594348 | 4_1:-54313783 | None:intergenic |
| AAATGGTCACGAAATAGAGA+AGG | 0.599995 | 4_1:+54313725 | Msa0556230:CDS |
| GAGAAACAGGAGAAGAATCA+GGG | 0.602861 | 4_1:-54313793 | None:intergenic |
| AGGAGTCTATCTCAAATCAG+TGG | 0.603211 | 4_1:+54317050 | Msa0556230:intron |
| AGATAGATTGAAATTAGGCG+AGG | 0.604271 | 4_1:-54313497 | None:intergenic |
| GGCAAGTGTCGTAGCTGCCA+AGG | 0.605231 | 4_1:+54314292 | Msa0556230:CDS |
| AAAGGTCTCCGGCAGAAGCA+CGG | 0.606022 | 4_1:-54313568 | None:intergenic |
| GGAGTCTATCTCAAATCAGT+GGG | 0.608347 | 4_1:+54317051 | Msa0556230:intron |
| CTGCCGGAGACCTTTCCCCA+CGG | 0.611563 | 4_1:+54313576 | Msa0556230:CDS |
| TCAATGTGACCCCAAACTTG+AGG | 0.614543 | 4_1:+54313838 | Msa0556230:CDS |
| GAAAGATATTGATTTAATGG+AGG | 0.617023 | 4_1:+54317305 | Msa0556230:CDS |
| GATAGATTGAAATTAGGCGA+GGG | 0.619292 | 4_1:-54313496 | None:intergenic |
| TGGGTTATAGGATTGTAAAG+AGG | 0.620510 | 4_1:+54314252 | Msa0556230:intron |
| AGGGATAGAGGTGGGCCGTG+GGG | 0.627374 | 4_1:-54313591 | None:intergenic |
| GAGAACATCAACCATCATAA+CGG | 0.631195 | 4_1:-54317345 | None:intergenic |
| AAGAGACGAGGGATAGAGGT+GGG | 0.633620 | 4_1:-54313599 | None:intergenic |
| GAGGTGGTTTATGAATGGAC+TGG | 0.635099 | 4_1:+54314271 | Msa0556230:CDS |
| GAGAGCGACTGGAAGAGACG+AGG | 0.635228 | 4_1:-54313611 | None:intergenic |
| AGAGCGACTGGAAGAGACGA+GGG | 0.639552 | 4_1:-54313610 | None:intergenic |
| GAAGAGACGAGGGATAGAGG+TGG | 0.643962 | 4_1:-54313600 | None:intergenic |
| AGCACGGTAGCGGAAGATGA+GGG | 0.649637 | 4_1:-54313552 | None:intergenic |
| GCTCTCCCTCCCCACCACCT+CGG | 0.664061 | 4_1:+54313628 | Msa0556230:CDS |
| ATGTGCAGAAGATAACAGCT+CGG | 0.677955 | 4_1:+54317283 | Msa0556230:CDS |
| GATAGGATACCTCAAGTTTG+GGG | 0.702768 | 4_1:-54313847 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTAAAAAAAAACAATTTTT+TGG | + | chr4_1:54315371-54315390 | Msa0556230:intron | 10.0% |
| !!! | ATTAAATTTTTATTTTACCT+AGG | + | chr4_1:54316808-54316827 | Msa0556230:intron | 10.0% |
| !!! | TATAATGAATCATAATTTGT+TGG | - | chr4_1:54314601-54314620 | None:intergenic | 15.0% |
| !! | TTATGATTTATGATTTACTT+TGG | + | chr4_1:54315867-54315886 | Msa0556230:intron | 15.0% |
| !! | CATTTATGAAAAAAAAGAAA+CGG | - | chr4_1:54316142-54316161 | None:intergenic | 15.0% |
| !! | AGAATCTTATTAATTCAAAT+TGG | - | chr4_1:54316665-54316684 | None:intergenic | 15.0% |
| !!! | ATGCTATCACTTTTATTTAT+GGG | - | chr4_1:54313351-54313370 | None:intergenic | 20.0% |
| !! | TTTCATAATTTCTAATTAGC+AGG | + | chr4_1:54315174-54315193 | Msa0556230:intron | 20.0% |
| !! | TTCATAATTTCTAATTAGCA+GGG | + | chr4_1:54315175-54315194 | Msa0556230:intron | 20.0% |
| !!! | TTGTTTTTTTAGACAACAAA+AGG | - | chr4_1:54315284-54315303 | None:intergenic | 20.0% |
| !! | AAAAAAATTGAGATGAGTAT+AGG | - | chr4_1:54315415-54315434 | None:intergenic | 20.0% |
| !! | ATTATCATGCTAATATTCAT+AGG | - | chr4_1:54315835-54315854 | None:intergenic | 20.0% |
| !!! | TTACTTTGGCTTATATTTTA+TGG | + | chr4_1:54315881-54315900 | Msa0556230:intron | 20.0% |
| !!! | CGTTTCTTTTTTTTCATAAA+TGG | + | chr4_1:54316140-54316159 | Msa0556230:intron | 20.0% |
| !!! | TGTTTTTATTGACTTGTTTT+GGG | - | chr4_1:54316279-54316298 | None:intergenic | 20.0% |
| !!! | TTGTTTTTATTGACTTGTTT+TGG | - | chr4_1:54316280-54316299 | None:intergenic | 20.0% |
| !! | TTAAAGCTAGATATATTCTA+CGG | + | chr4_1:54316520-54316539 | Msa0556230:intron | 20.0% |
| !!! | CATGCTATCACTTTTATTTA+TGG | - | chr4_1:54313352-54313371 | None:intergenic | 25.0% |
| ! | CATAAATAAAAGTGATAGCA+TGG | + | chr4_1:54313350-54313369 | Msa0556230:five_prime_UTR | 25.0% |
| ! | GTGTAAGATAGATTGAAATT+AGG | - | chr4_1:54313505-54313524 | None:intergenic | 25.0% |
| ! | GATATAAGCTATAAGTTGTT+TGG | - | chr4_1:54313923-54313942 | None:intergenic | 25.0% |
| ! | TAACCAATTAATTAAGTGGT+TGG | + | chr4_1:54314017-54314036 | Msa0556230:intron | 25.0% |
| ! | AACACTAGATAAGTTCAAAT+AGG | - | chr4_1:54314051-54314070 | None:intergenic | 25.0% |
| ! | TTTCTAATTCTATAAGGTCT+CGG | - | chr4_1:54314075-54314094 | None:intergenic | 25.0% |
| !!! | GGATTGTTTCTAATTCTATA+AGG | - | chr4_1:54314081-54314100 | None:intergenic | 25.0% |
| !! | AATAAGTTGAAAACAGCTTA+TGG | - | chr4_1:54314102-54314121 | None:intergenic | 25.0% |
| !!! | TTGAGTAGATATTTTGATGA+TGG | + | chr4_1:54314232-54314251 | Msa0556230:intron | 25.0% |
| !!! | TGAGTAGATATTTTGATGAT+GGG | + | chr4_1:54314233-54314252 | Msa0556230:intron | 25.0% |
| !!! | ATATTTTGATGATGGGTTAT+AGG | + | chr4_1:54314240-54314259 | Msa0556230:intron | 25.0% |
| ! | TAAGCTACTATAACAAAAGA+GGG | + | chr4_1:54314326-54314345 | Msa0556230:CDS | 25.0% |
| ! | ATGTAATGTAATACGTTGAT+AGG | - | chr4_1:54314403-54314422 | None:intergenic | 25.0% |
| ! | ACTGTATCAAATGTCTTTAA+AGG | + | chr4_1:54314682-54314701 | Msa0556230:intron | 25.0% |
| ! | AACATATATATGATCACACT+TGG | + | chr4_1:54314711-54314730 | Msa0556230:intron | 25.0% |
| !!! | TTTTTAGTGTCTTTGAAACT+AGG | + | chr4_1:54315062-54315081 | Msa0556230:intron | 25.0% |
| !!! | TCATTTTTACACAACAACTA+TGG | + | chr4_1:54315249-54315268 | Msa0556230:intron | 25.0% |
| ! | CTAAAAAAACAATTTCCCTT+TGG | + | chr4_1:54315292-54315311 | Msa0556230:intron | 25.0% |
| !! | AGTACTTGTATCTTTTACAA+AGG | - | chr4_1:54315318-54315337 | None:intergenic | 25.0% |
| !!! | ATGCAGTTTTGTAATTTGTA+AGG | - | chr4_1:54315465-54315484 | None:intergenic | 25.0% |
| ! | CTTGCATATAAAAAAACTCA+GGG | - | chr4_1:54315608-54315627 | None:intergenic | 25.0% |
| ! | TCTTGCATATAAAAAAACTC+AGG | - | chr4_1:54315609-54315628 | None:intergenic | 25.0% |
| ! | TCTATGTTGAAATGGTTAAA+AGG | - | chr4_1:54315987-54316006 | None:intergenic | 25.0% |
| ! | TGTCCATTATATTTCAAACA+GGG | - | chr4_1:54316213-54316232 | None:intergenic | 25.0% |
| ! | TTGTCCATTATATTTCAAAC+AGG | - | chr4_1:54316214-54316233 | None:intergenic | 25.0% |
| ! | ACTCTGATATTTCCATTATA+AGG | + | chr4_1:54316485-54316504 | Msa0556230:intron | 25.0% |
| ! | TATTTCCATTATAAGGTTTC+AGG | + | chr4_1:54316492-54316511 | Msa0556230:intron | 25.0% |
| ! | TATAACCTGAAACCTTATAA+TGG | - | chr4_1:54316500-54316519 | None:intergenic | 25.0% |
| ! | TAAAGCTAGATATATTCTAC+GGG | + | chr4_1:54316521-54316540 | Msa0556230:intron | 25.0% |
| ! | TATTAAAGTAAGCAAGATGT+AGG | + | chr4_1:54316762-54316781 | Msa0556230:intron | 25.0% |
| ! | AATATACACATGAAATTCCT+AGG | - | chr4_1:54316828-54316847 | None:intergenic | 25.0% |
| ! | AGGAATTTCATGTGTATATT+AGG | + | chr4_1:54316828-54316847 | Msa0556230:intron | 25.0% |
| ! | ACATAGAATTAAGATCATAG+AGG | - | chr4_1:54317159-54317178 | None:intergenic | 25.0% |
| ! | AAGTGAATACAAAGAAACAA+TGG | - | chr4_1:54317197-54317216 | None:intergenic | 25.0% |
| !!! | TTCTTTGTATTCACTTTTAC+TGG | + | chr4_1:54317201-54317220 | Msa0556230:intron | 25.0% |
| !!! | TCGGAAAGATATTGATTTAA+TGG | + | chr4_1:54317302-54317321 | Msa0556230:CDS | 25.0% |
| !!! | GAAAGATATTGATTTAATGG+AGG | + | chr4_1:54317305-54317324 | Msa0556230:CDS | 25.0% |
| TTCTTCTTCTCTGTATGTAT+TGG | - | chr4_1:54313395-54313414 | None:intergenic | 30.0% | |
| ATGCGATAATTTCAGAGAAA+GGG | - | chr4_1:54313461-54313480 | None:intergenic | 30.0% | |
| AATGCGATAATTTCAGAGAA+AGG | - | chr4_1:54313462-54313481 | None:intergenic | 30.0% | |
| ACGAAATAGAGAAGGATATA+TGG | + | chr4_1:54313733-54313752 | Msa0556230:CDS | 30.0% | |
| !! | GAAGGATATATGGTTGATAA+TGG | + | chr4_1:54313743-54313762 | Msa0556230:CDS | 30.0% |
| TTAATTGGTTAGAGCATAAG+TGG | - | chr4_1:54314008-54314027 | None:intergenic | 30.0% | |
| GCTCTAACCAATTAATTAAG+TGG | + | chr4_1:54314013-54314032 | Msa0556230:intron | 30.0% | |
| AGTCCAACCACTTAATTAAT+TGG | - | chr4_1:54314023-54314042 | None:intergenic | 30.0% | |
| TTAATTAAGTGGTTGGACTT+CGG | + | chr4_1:54314024-54314043 | Msa0556230:intron | 30.0% | |
| GTTATAGTAGCTTACATATC+CGG | - | chr4_1:54314320-54314339 | None:intergenic | 30.0% | |
| GTAAGCTACTATAACAAAAG+AGG | + | chr4_1:54314325-54314344 | Msa0556230:CDS | 30.0% | |
| ! | AAAAGTATACCAGCACAAAA+AGG | - | chr4_1:54314442-54314461 | None:intergenic | 30.0% |
| !! | TTTTTAGTCAAGTAGCTTAG+TGG | + | chr4_1:54314488-54314507 | Msa0556230:intron | 30.0% |
| !! | GAATCATAATTTGTTGGTAG+CGG | - | chr4_1:54314595-54314614 | None:intergenic | 30.0% |
| !!! | GTTAGGTTCTTTTTTGTATG+TGG | + | chr4_1:54314933-54314952 | Msa0556230:intron | 30.0% |
| TATGTGGAACCTTTAGATAT+AGG | + | chr4_1:54314949-54314968 | Msa0556230:intron | 30.0% | |
| ! | TTTGAGATAGAAAAGTGGTT+GGG | - | chr4_1:54315002-54315021 | None:intergenic | 30.0% |
| !! | ATGACTTTGAGATAGAAAAG+TGG | - | chr4_1:54315007-54315026 | None:intergenic | 30.0% |
| ! | CTTTTCTATCTCAAAGTCAT+TGG | + | chr4_1:54315007-54315026 | Msa0556230:intron | 30.0% |
| TATAACCCTATATCTCCTTA+GGG | + | chr4_1:54315109-54315128 | Msa0556230:intron | 30.0% | |
| !!! | TGCTCTCAAATTATTTTGAC+TGG | + | chr4_1:54315203-54315222 | Msa0556230:intron | 30.0% |
| GTAAAAATGAAAACCCTTCA+TGG | - | chr4_1:54315239-54315258 | None:intergenic | 30.0% | |
| ! | TATCTTTTACAAAGGCCAAA+GGG | - | chr4_1:54315310-54315329 | None:intergenic | 30.0% |
| AAGGACTGAAAACTGAATAT+AGG | - | chr4_1:54315446-54315465 | None:intergenic | 30.0% | |
| ! | CATGCTTTTAGTCATTCTTT+AGG | + | chr4_1:54315482-54315501 | Msa0556230:intron | 30.0% |
| ! | ATGCAGTTTTGCAATTTGTA+GGG | + | chr4_1:54315515-54315534 | Msa0556230:intron | 30.0% |
| CACTATCTTCTATGTTGAAA+TGG | - | chr4_1:54315995-54316014 | None:intergenic | 30.0% | |
| CATTTCAACATAGAAGATAG+TGG | + | chr4_1:54315993-54316012 | Msa0556230:intron | 30.0% | |
| GATACTAAAACTTGAGAAGA+CGG | + | chr4_1:54316022-54316041 | Msa0556230:intron | 30.0% | |
| ACGACATAAGTTTATCTGTT+AGG | + | chr4_1:54316063-54316082 | Msa0556230:intron | 30.0% | |
| ! | AACCCCTGTTTGAAATATAA+TGG | + | chr4_1:54316207-54316226 | Msa0556230:intron | 30.0% |
| GTCCATTATATTTCAAACAG+GGG | - | chr4_1:54316212-54316231 | None:intergenic | 30.0% | |
| AGTCAATAAAAACAAGATGC+TGG | + | chr4_1:54316285-54316304 | Msa0556230:intron | 30.0% | |
| GTCAATAAAAACAAGATGCT+GGG | + | chr4_1:54316286-54316305 | Msa0556230:intron | 30.0% | |
| TCAATAAAAACAAGATGCTG+GGG | + | chr4_1:54316287-54316306 | Msa0556230:intron | 30.0% | |
| TACTTAATAGTGAGCTATAG+TGG | - | chr4_1:54316466-54316485 | None:intergenic | 30.0% | |
| AAAGATCAATGGAATACAAG+TGG | - | chr4_1:54316572-54316591 | None:intergenic | 30.0% | |
| ! | TTTTTCTCGACTTCTCTATA+TGG | + | chr4_1:54316589-54316608 | Msa0556230:intron | 30.0% |
| ! | AATTTTCTGTTGCGTGATTT+TGG | + | chr4_1:54316633-54316652 | Msa0556230:intron | 30.0% |
| GTCATGATTCATATGACTAT+GGG | - | chr4_1:54316691-54316710 | None:intergenic | 30.0% | |
| TGTCATGATTCATATGACTA+TGG | - | chr4_1:54316692-54316711 | None:intergenic | 30.0% | |
| ATCATGACATCTAATTCTGT+AGG | + | chr4_1:54316703-54316722 | Msa0556230:intron | 30.0% | |
| ! | GTAAAAGCACAATGAAACAA+TGG | - | chr4_1:54316742-54316761 | None:intergenic | 30.0% |
| ATGTGTATATTAGGAGTTGT+TGG | + | chr4_1:54316837-54316856 | Msa0556230:intron | 30.0% | |
| ! | ATTTTATACCACGTTATCTC+TGG | + | chr4_1:54316945-54316964 | Msa0556230:intron | 30.0% |
| ! | TTTTATACCACGTTATCTCT+GGG | + | chr4_1:54316946-54316965 | Msa0556230:intron | 30.0% |
| GATAAGCTGCATAAATAAGA+TGG | + | chr4_1:54316976-54316995 | Msa0556230:intron | 30.0% | |
| ! | AAGTAAGAATTCTGTTGCTT+TGG | + | chr4_1:54317019-54317038 | Msa0556230:intron | 30.0% |
| !! | AGTAAGAATTCTGTTGCTTT+GGG | + | chr4_1:54317020-54317039 | Msa0556230:intron | 30.0% |
| ! | AGGTACCTTTTCAATAGAAA+AGG | - | chr4_1:54317139-54317158 | None:intergenic | 30.0% |
| !!! | TGTTTTTGAAGTTGTCAACT+TGG | + | chr4_1:54317228-54317247 | Msa0556230:intron | 30.0% |
| !! | TATTGATTTAATGGAGGACT+TGG | + | chr4_1:54317311-54317330 | Msa0556230:CDS | 30.0% |
| ! | ATTGATTTAATGGAGGACTT+GGG | + | chr4_1:54317312-54317331 | Msa0556230:CDS | 30.0% |
| GATAGATTGAAATTAGGCGA+GGG | - | chr4_1:54313499-54313518 | None:intergenic | 35.0% | |
| AGATAGATTGAAATTAGGCG+AGG | - | chr4_1:54313500-54313519 | None:intergenic | 35.0% | |
| TGAAAGCTAAGGAGAGAAAA+TGG | + | chr4_1:54313708-54313727 | Msa0556230:CDS | 35.0% | |
| AAATGGTCACGAAATAGAGA+AGG | + | chr4_1:54313725-54313744 | Msa0556230:CDS | 35.0% | |
| AGATAGGATACCTCAAGTTT+GGG | - | chr4_1:54313851-54313870 | None:intergenic | 35.0% | |
| TAGATAGGATACCTCAAGTT+TGG | - | chr4_1:54313852-54313871 | None:intergenic | 35.0% | |
| TGGGTTATAGGATTGTAAAG+AGG | + | chr4_1:54314252-54314271 | Msa0556230:intron | 35.0% | |
| GTTATAGGATTGTAAAGAGG+TGG | + | chr4_1:54314255-54314274 | Msa0556230:intron | 35.0% | |
| GTAAAGAGGTGGTTTATGAA+TGG | + | chr4_1:54314266-54314285 | Msa0556230:CDS | 35.0% | |
| CTATAACAAAAGAGGGAAAG+AGG | + | chr4_1:54314333-54314352 | Msa0556230:CDS | 35.0% | |
| TTGCAAATGCATTCCTTGTA+TGG | + | chr4_1:54314360-54314379 | Msa0556230:CDS | 35.0% | |
| TGCAAATGCATTCCTTGTAT+GGG | + | chr4_1:54314361-54314380 | Msa0556230:CDS | 35.0% | |
| !!! | TCGTTTTTTCCTTTTTGTGC+TGG | + | chr4_1:54314430-54314449 | Msa0556230:intron | 35.0% |
| !! | ATAATTTGTTGGTAGCGGTA+AGG | - | chr4_1:54314590-54314609 | None:intergenic | 35.0% |
| ! | TCAGACATGTCTGTATTTTG+TGG | - | chr4_1:54314744-54314763 | None:intergenic | 35.0% |
| TTAAATGGTTGCAGCCATAT+GGG | + | chr4_1:54314841-54314860 | Msa0556230:intron | 35.0% | |
| ! | TTAAGGGCTTTGACTTCAAA+TGG | + | chr4_1:54314911-54314930 | Msa0556230:intron | 35.0% |
| !! | CTTTGAGATAGAAAAGTGGT+TGG | - | chr4_1:54315003-54315022 | None:intergenic | 35.0% |
| GTATAACCCTATATCTCCTT+AGG | + | chr4_1:54315108-54315127 | Msa0556230:intron | 35.0% | |
| ACTATCCCTAAGGAGATATA+GGG | - | chr4_1:54315117-54315136 | None:intergenic | 35.0% | |
| TACTATCCCTAAGGAGATAT+AGG | - | chr4_1:54315118-54315137 | None:intergenic | 35.0% | |
| ! | GAAATAGAGTACTATCCCTA+AGG | - | chr4_1:54315127-54315146 | None:intergenic | 35.0% |
| ! | GTATCTTTTACAAAGGCCAA+AGG | - | chr4_1:54315311-54315330 | None:intergenic | 35.0% |
| !! | AGTACTGATGTACATACACT+AGG | + | chr4_1:54315332-54315351 | Msa0556230:intron | 35.0% |
| ! | ATTGCAAAACTGCATGCTTT+TGG | - | chr4_1:54315510-54315529 | None:intergenic | 35.0% |
| ! | CATGCAGTTTTGCAATTTGT+AGG | + | chr4_1:54315514-54315533 | Msa0556230:intron | 35.0% |
| TGCAATTTGTAGGGACTAAA+AGG | + | chr4_1:54315524-54315543 | Msa0556230:intron | 35.0% | |
| GCAATTTGTAGGGACTAAAA+GGG | + | chr4_1:54315525-54315544 | Msa0556230:intron | 35.0% | |
| CAATTTGTAGGGACTAAAAG+GGG | + | chr4_1:54315526-54315545 | Msa0556230:intron | 35.0% | |
| AATTTGTAGGGACTAAAAGG+GGG | + | chr4_1:54315527-54315546 | Msa0556230:intron | 35.0% | |
| !!! | GTATGCAGCATCTTATTTTG+AGG | + | chr4_1:54315673-54315692 | Msa0556230:intron | 35.0% |
| !! | CAAGTTTTATCTCACTAGGT+GGG | - | chr4_1:54315726-54315745 | None:intergenic | 35.0% |
| !! | CAACCAAGTTTTATCTCACT+AGG | - | chr4_1:54315730-54315749 | None:intergenic | 35.0% |
| CAAAATTATACCTTCTAGCG+AGG | + | chr4_1:54316103-54316122 | Msa0556230:intron | 35.0% | |
| ! | TTATCCCAGTACGGAATTTT+TGG | - | chr4_1:54316185-54316204 | None:intergenic | 35.0% |
| TATTAATTCCAGTGCCTCTT+TGG | - | chr4_1:54316365-54316384 | None:intergenic | 35.0% | |
| CAAGTGGAAACATTCTACAT+CGG | - | chr4_1:54316556-54316575 | None:intergenic | 35.0% | |
| GAAGTCGAGAAAAAGATCAA+TGG | - | chr4_1:54316583-54316602 | None:intergenic | 35.0% | |
| ! | AAAGCACCTAAGAATCTATG+CGG | - | chr4_1:54316911-54316930 | None:intergenic | 35.0% |
| TTTATACCACGTTATCTCTG+GGG | + | chr4_1:54316947-54316966 | Msa0556230:intron | 35.0% | |
| !! | GTAAGAATTCTGTTGCTTTG+GGG | + | chr4_1:54317021-54317040 | Msa0556230:intron | 35.0% |
| ACAAGACAAGCATACAATTC+AGG | - | chr4_1:54317082-54317101 | None:intergenic | 35.0% | |
| ! | ATATGCAAAGTGTCTTGCTT+TGG | + | chr4_1:54317106-54317125 | Msa0556230:CDS | 35.0% |
| ! | GTACGCCTTTTCTATTGAAA+AGG | + | chr4_1:54317131-54317150 | Msa0556230:CDS | 35.0% |
| AGTTGTCAACTTGGAATAAC+TGG | + | chr4_1:54317237-54317256 | Msa0556230:intron | 35.0% | |
| TCTGCACATATCCTGAAAAA+CGG | - | chr4_1:54317272-54317291 | None:intergenic | 35.0% | |
| GAAGAATCAGGGTAAGTCAT+GGG | - | chr4_1:54313785-54313804 | None:intergenic | 40.0% | |
| AGAAGAATCAGGGTAAGTCA+TGG | - | chr4_1:54313786-54313805 | None:intergenic | 40.0% | |
| GAGAAACAGGAGAAGAATCA+GGG | - | chr4_1:54313796-54313815 | None:intergenic | 40.0% | |
| GATAGGATACCTCAAGTTTG+GGG | - | chr4_1:54313850-54313869 | None:intergenic | 40.0% | |
| ! | CAAAGAGAGTGTAGGTAGAT+AGG | - | chr4_1:54313867-54313886 | None:intergenic | 40.0% |
| CTATCTACCTACACTCTCTT+TGG | + | chr4_1:54313865-54313884 | Msa0556230:intron | 40.0% | |
| ! | AGTCAAACCAAAGAGAGTGT+AGG | - | chr4_1:54313875-54313894 | None:intergenic | 40.0% |
| TGCATTCCTTGTATGGGAAT+TGG | + | chr4_1:54314367-54314386 | Msa0556230:CDS | 40.0% | |
| GCATTACCAATTCCCATACA+AGG | - | chr4_1:54314376-54314395 | None:intergenic | 40.0% | |
| AAACTCACACACCTTAAGTG+TGG | + | chr4_1:54314513-54314532 | Msa0556230:intron | 40.0% | |
| ACACCTTAAGTGTGGATGAA+TGG | + | chr4_1:54314521-54314540 | Msa0556230:intron | 40.0% | |
| TCTCCATTCATCCACACTTA+AGG | - | chr4_1:54314527-54314546 | None:intergenic | 40.0% | |
| TGTGGATGAATGGAGAATCT+CGG | + | chr4_1:54314531-54314550 | Msa0556230:intron | 40.0% | |
| TATATATGTAGCGAAGCCTG+AGG | + | chr4_1:54314617-54314636 | Msa0556230:intron | 40.0% | |
| ATATATGTAGCGAAGCCTGA+GGG | + | chr4_1:54314618-54314637 | Msa0556230:intron | 40.0% | |
| TACGCCTAACTCTCCTTAAA+TGG | + | chr4_1:54314826-54314845 | Msa0556230:intron | 40.0% | |
| GCAACCATTTAAGGAGAGTT+AGG | - | chr4_1:54314833-54314852 | None:intergenic | 40.0% | |
| CATATGGCTGCAACCATTTA+AGG | - | chr4_1:54314842-54314861 | None:intergenic | 40.0% | |
| CTTAAATGGTTGCAGCCATA+TGG | + | chr4_1:54314840-54314859 | Msa0556230:intron | 40.0% | |
| TAAATGGTTGCAGCCATATG+GGG | + | chr4_1:54314842-54314861 | Msa0556230:intron | 40.0% | |
| GGAAGGGATTACAGTAAAGT+CGG | + | chr4_1:54314874-54314893 | Msa0556230:intron | 40.0% | |
| !! | GGTGCTGCTTAGCTATTTAA+GGG | + | chr4_1:54314895-54314914 | Msa0556230:intron | 40.0% |
| ! | GGCTTTGACTTCAAATGGTT+AGG | + | chr4_1:54314916-54314935 | Msa0556230:intron | 40.0% |
| TCAGGTGTGCCTATATCTAA+AGG | - | chr4_1:54314961-54314980 | None:intergenic | 40.0% | |
| ACTTACATCACTTCGAAGCT+GGG | - | chr4_1:54315090-54315109 | None:intergenic | 40.0% | |
| TACTTACATCACTTCGAAGC+TGG | - | chr4_1:54315091-54315110 | None:intergenic | 40.0% | |
| TGGCTAACATAGTCCATGAA+GGG | + | chr4_1:54315223-54315242 | Msa0556230:intron | 40.0% | |
| TTTATCTCACTAGGTGGGTA+GGG | - | chr4_1:54315721-54315740 | None:intergenic | 40.0% | |
| ! | TTTTATCTCACTAGGTGGGT+AGG | - | chr4_1:54315722-54315741 | None:intergenic | 40.0% |
| !! | CCAAGTTTTATCTCACTAGG+TGG | - | chr4_1:54315727-54315746 | None:intergenic | 40.0% |
| CCACCTAGTGAGATAAAACT+TGG | + | chr4_1:54315724-54315743 | Msa0556230:intron | 40.0% | |
| ACAACTTTGATGCAGGACTT+AGG | - | chr4_1:54315779-54315798 | None:intergenic | 40.0% | |
| CATCTAGACAACTTTGATGC+AGG | - | chr4_1:54315786-54315805 | None:intergenic | 40.0% | |
| AGCTCCAAAAATTCCGTACT+GGG | + | chr4_1:54316178-54316197 | Msa0556230:intron | 40.0% | |
| CATTATCTCAGCCACAACTA+CGG | - | chr4_1:54316327-54316346 | None:intergenic | 40.0% | |
| ATCCTACCACACTTTCATTG+TGG | + | chr4_1:54316877-54316896 | Msa0556230:intron | 40.0% | |
| ! | TACCACAATGAAAGTGTGGT+AGG | - | chr4_1:54316882-54316901 | None:intergenic | 40.0% |
| TACCACACTTTCATTGTGGT+AGG | + | chr4_1:54316881-54316900 | Msa0556230:intron | 40.0% | |
| TACCTACCACAATGAAAGTG+TGG | - | chr4_1:54316886-54316905 | None:intergenic | 40.0% | |
| TTATACCACGTTATCTCTGG+GGG | + | chr4_1:54316948-54316967 | Msa0556230:intron | 40.0% | |
| AGGAGTCTATCTCAAATCAG+TGG | + | chr4_1:54317050-54317069 | Msa0556230:intron | 40.0% | |
| GGAGTCTATCTCAAATCAGT+GGG | + | chr4_1:54317051-54317070 | Msa0556230:intron | 40.0% | |
| ! | CAACTTGGAATAACTGGTCT+TGG | + | chr4_1:54317243-54317262 | Msa0556230:CDS | 40.0% |
| ATGTGCAGAAGATAACAGCT+CGG | + | chr4_1:54317283-54317302 | Msa0556230:CDS | 40.0% | |
| TTAATGGAGGACTTGGGTAA+TGG | + | chr4_1:54317318-54317337 | Msa0556230:CDS | 40.0% | |
| GTGGATGAAGGTGAAAGCTA+AGG | + | chr4_1:54313697-54313716 | Msa0556230:CDS | 45.0% | |
| TAAGTCATGGGAAGTGGAAG+AGG | - | chr4_1:54313773-54313792 | None:intergenic | 45.0% | |
| GGAGAAACAGGAGAAGAATC+AGG | - | chr4_1:54313797-54313816 | None:intergenic | 45.0% | |
| TCAACGACTTCAGGAGAAAC+AGG | - | chr4_1:54313809-54313828 | None:intergenic | 45.0% | |
| ! | CAAGTTTGGGGTCACATTGA+AGG | - | chr4_1:54313838-54313857 | None:intergenic | 45.0% |
| TCAATGTGACCCCAAACTTG+AGG | + | chr4_1:54313838-54313857 | Msa0556230:CDS | 45.0% | |
| GAGGTGGTTTATGAATGGAC+TGG | + | chr4_1:54314271-54314290 | Msa0556230:CDS | 45.0% | |
| AGCTTACATATCCGGATCCT+TGG | - | chr4_1:54314312-54314331 | None:intergenic | 45.0% | |
| GTGGATGAATGGAGAATCTC+GGG | + | chr4_1:54314532-54314551 | Msa0556230:intron | 45.0% | |
| AGAATCTCGGGTTCGAACTT+AGG | + | chr4_1:54314544-54314563 | Msa0556230:intron | 45.0% | |
| GAATCTCGGGTTCGAACTTA+GGG | + | chr4_1:54314545-54314564 | Msa0556230:intron | 45.0% | |
| !! | CGGTGCTGCTTAGCTATTTA+AGG | + | chr4_1:54314894-54314913 | Msa0556230:intron | 45.0% |
| CTGGCTAACATAGTCCATGA+AGG | + | chr4_1:54315222-54315241 | Msa0556230:intron | 45.0% | |
| AAGTTTCTCTCCTCGCTAGA+AGG | - | chr4_1:54316116-54316135 | None:intergenic | 45.0% | |
| !!! | CAGTACGGAATTTTTGGAGC+TGG | - | chr4_1:54316179-54316198 | None:intergenic | 45.0% |
| CAGCTCCAAAAATTCCGTAC+TGG | + | chr4_1:54316177-54316196 | Msa0556230:intron | 45.0% | |
| !! | AGGGGTTAGTTATCCCAGTA+CGG | - | chr4_1:54316194-54316213 | None:intergenic | 45.0% |
| AAAACAAGATGCTGGGGCTA+AGG | + | chr4_1:54316293-54316312 | Msa0556230:intron | 45.0% | |
| ! | AGGTTTAAGTGCCGTAGTTG+TGG | + | chr4_1:54316313-54316332 | Msa0556230:intron | 45.0% |
| GGTACTCCGCATAGATTCTT+AGG | + | chr4_1:54316902-54316921 | Msa0556230:intron | 45.0% | |
| !!! | TATAAAATTTACATTTTTTT+TGG | - | chr4_1:54315561-54315580 | None:intergenic | 5.0% |
| !!! | AAAAAAAATGTAAATTTTAT+AGG | + | chr4_1:54315560-54315579 | Msa0556230:intron | 5.0% |
| !!! | AAAAAAATGTAAATTTTATA+GGG | + | chr4_1:54315561-54315580 | Msa0556230:intron | 5.0% |
| AAGAGACGAGGGATAGAGGT+GGG | - | chr4_1:54313602-54313621 | None:intergenic | 50.0% | |
| TCAGGGTAAGTCATGGGAAG+TGG | - | chr4_1:54313779-54313798 | None:intergenic | 50.0% | |
| AGGCGTTCATCAACGACTTC+AGG | - | chr4_1:54313818-54313837 | None:intergenic | 50.0% | |
| TGAACGCTCTCAAATCCCTC+AGG | - | chr4_1:54314636-54314655 | None:intergenic | 50.0% | |
| TTGTGGCTGAGATAATGCCC+TGG | + | chr4_1:54316330-54316349 | Msa0556230:intron | 50.0% | |
| TACGTGCTATATGCCTGCGT+TGG | + | chr4_1:54316413-54316432 | Msa0556230:intron | 50.0% | |
| ACGTGCTATATGCCTGCGTT+GGG | + | chr4_1:54316414-54316433 | Msa0556230:intron | 50.0% | |
| ACTATCCCCCAGAGATAACG+TGG | - | chr4_1:54316956-54316975 | None:intergenic | 50.0% | |
| !!! | GGTCTTGGTGTCCGTTTTTC+AGG | + | chr4_1:54317258-54317277 | Msa0556230:CDS | 50.0% |
| !! | AGCACGGTAGCGGAAGATGA+GGG | - | chr4_1:54313555-54313574 | None:intergenic | 55.0% |
| !! | AAGCACGGTAGCGGAAGATG+AGG | - | chr4_1:54313556-54313575 | None:intergenic | 55.0% |
| AAAGGTCTCCGGCAGAAGCA+CGG | - | chr4_1:54313571-54313590 | None:intergenic | 55.0% | |
| GAAGAGACGAGGGATAGAGG+TGG | - | chr4_1:54313603-54313622 | None:intergenic | 55.0% | |
| CTGGAAGAGACGAGGGATAG+AGG | - | chr4_1:54313606-54313625 | None:intergenic | 55.0% | |
| AGAGCGACTGGAAGAGACGA+GGG | - | chr4_1:54313613-54313632 | None:intergenic | 55.0% | |
| TGTCGTAGCTGCCAAGGATC+CGG | + | chr4_1:54314298-54314317 | Msa0556230:CDS | 55.0% | |
| CGGTAAGGACGCTGACATGT+TGG | - | chr4_1:54314575-54314594 | None:intergenic | 55.0% | |
| ATGGTTGCAGCCATATGGGG+TGG | + | chr4_1:54314845-54314864 | Msa0556230:intron | 55.0% | |
| AGTGGTTGGGCCTGCAGAAA+GGG | - | chr4_1:54314989-54315008 | None:intergenic | 55.0% | |
| AAGTGGTTGGGCCTGCAGAA+AGG | - | chr4_1:54314990-54315009 | None:intergenic | 55.0% | |
| ! | AGGGACTAAAAGGGGGCACA+AGG | + | chr4_1:54315534-54315553 | Msa0556230:intron | 55.0% |
| TCTCACTAGGTGGGTAGGGT+TGG | - | chr4_1:54315717-54315736 | None:intergenic | 55.0% | |
| CTCTTTGGTGAAGCCTGCCA+GGG | - | chr4_1:54316350-54316369 | None:intergenic | 55.0% | |
| ! | AGGCTTCACCAAAGAGGCAC+TGG | + | chr4_1:54316354-54316373 | Msa0556230:intron | 55.0% |
| !! | CTGTTGCTTTGGGGTCACGT+AGG | + | chr4_1:54317030-54317049 | Msa0556230:intron | 55.0% |
| TTCCGCTACCGTGCTTCTGC+CGG | + | chr4_1:54313560-54313579 | Msa0556230:CDS | 60.0% | |
| GAGAGCGACTGGAAGAGACG+AGG | - | chr4_1:54313614-54313633 | None:intergenic | 60.0% | |
| CTTCATCCACTCGTTCCCGC+CGG | - | chr4_1:54313687-54313706 | None:intergenic | 60.0% | |
| ! | GGCAAGTGTCGTAGCTGCCA+AGG | + | chr4_1:54314292-54314311 | Msa0556230:CDS | 60.0% |
| TGCAGCCATATGGGGTGGAG+TGG | + | chr4_1:54314850-54314869 | Msa0556230:intron | 60.0% | |
| GCAGCCATATGGGGTGGAGT+GGG | + | chr4_1:54314851-54314870 | Msa0556230:intron | 60.0% | |
| CAGCCATATGGGGTGGAGTG+GGG | + | chr4_1:54314852-54314871 | Msa0556230:intron | 60.0% | |
| AGCCATATGGGGTGGAGTGG+GGG | + | chr4_1:54314853-54314872 | Msa0556230:intron | 60.0% | |
| TTCCCCCACTCCACCCCATA+TGG | - | chr4_1:54314858-54314877 | None:intergenic | 60.0% | |
| ATATGGGGTGGAGTGGGGGA+AGG | + | chr4_1:54314857-54314876 | Msa0556230:intron | 60.0% | |
| TATGGGGTGGAGTGGGGGAA+GGG | + | chr4_1:54314858-54314877 | Msa0556230:intron | 60.0% | |
| CCTGCAGAAAGGGGACAGTC+AGG | - | chr4_1:54314979-54314998 | None:intergenic | 60.0% | |
| CCTGACTGTCCCCTTTCTGC+AGG | + | chr4_1:54314976-54314995 | Msa0556230:intron | 60.0% | |
| GTGGTTGGGCCTGCAGAAAG+GGG | - | chr4_1:54314988-54315007 | None:intergenic | 60.0% | |
| GGCTGAGATAATGCCCTGGC+AGG | + | chr4_1:54316334-54316353 | Msa0556230:intron | 60.0% | |
| CCTCTTTGGTGAAGCCTGCC+AGG | - | chr4_1:54316351-54316370 | None:intergenic | 60.0% | |
| CCTGGCAGGCTTCACCAAAG+AGG | + | chr4_1:54316348-54316367 | Msa0556230:intron | 60.0% | |
| GCTATATGCCTGCGTTGGGC+TGG | + | chr4_1:54316418-54316437 | Msa0556230:intron | 60.0% | |
| CATGACAACCAGCCCAACGC+AGG | - | chr4_1:54316429-54316448 | None:intergenic | 60.0% | |
| !! | CTGCGTTGGGCTGGTTGTCA+TGG | + | chr4_1:54316427-54316446 | Msa0556230:intron | 60.0% |
| !! | CGTTGGGCTGGTTGTCATGG+CGG | + | chr4_1:54316430-54316449 | Msa0556230:intron | 60.0% |
| ! | CTCCGGCAGAAGCACGGTAG+CGG | - | chr4_1:54313565-54313584 | None:intergenic | 65.0% |
| CTGCCGGAGACCTTTCCCCA+CGG | + | chr4_1:54313576-54313595 | Msa0556230:CDS | 65.0% | |
| TAGAGGTGGGCCGTGGGGAA+AGG | - | chr4_1:54313589-54313608 | None:intergenic | 65.0% | |
| AGGGATAGAGGTGGGCCGTG+GGG | - | chr4_1:54313594-54313613 | None:intergenic | 65.0% | |
| GAGGGATAGAGGTGGGCCGT+GGG | - | chr4_1:54313595-54313614 | None:intergenic | 65.0% | |
| TCTACGACGGCCGAGGTGGT+GGG | - | chr4_1:54313641-54313660 | None:intergenic | 65.0% | |
| TTCTACGACGGCCGAGGTGG+TGG | - | chr4_1:54313642-54313661 | None:intergenic | 65.0% | |
| ACCACCTCGGCCGTCGTAGA+AGG | + | chr4_1:54313641-54313660 | Msa0556230:CDS | 65.0% | |
| ACCTTCTACGACGGCCGAGG+TGG | - | chr4_1:54313645-54313664 | None:intergenic | 65.0% | |
| ACCTCGGCCGTCGTAGAAGG+TGG | + | chr4_1:54313644-54313663 | Msa0556230:CDS | 65.0% | |
| AGCGGCGCCACCTTCTACGA+CGG | - | chr4_1:54313654-54313673 | None:intergenic | 65.0% | |
| CGGCGGGAACGAGTGGATGA+AGG | + | chr4_1:54313685-54313704 | Msa0556230:CDS | 65.0% | |
| GGGCCGTGGGGAAAGGTCTC+CGG | - | chr4_1:54313582-54313601 | None:intergenic | 70.0% | |
| CGAGGGATAGAGGTGGGCCG+TGG | - | chr4_1:54313596-54313615 | None:intergenic | 70.0% | |
| TGGTGGGGAGGGAGAGCGAC+TGG | - | chr4_1:54313625-54313644 | None:intergenic | 70.0% | |
| GCTCTCCCTCCCCACCACCT+CGG | + | chr4_1:54313628-54313647 | Msa0556230:CDS | 70.0% | |
| CTACGACGGCCGAGGTGGTG+GGG | - | chr4_1:54313640-54313659 | None:intergenic | 70.0% | |
| GCCACCTTCTACGACGGCCG+AGG | - | chr4_1:54313648-54313667 | None:intergenic | 70.0% | |
| !! | GACGGCCGAGGTGGTGGGGA+GGG | - | chr4_1:54313636-54313655 | None:intergenic | 75.0% |
| !!! | CGACGGCCGAGGTGGTGGGG+AGG | - | chr4_1:54313637-54313656 | None:intergenic | 80.0% |
| ! | GGCGCCGCTGCTAGACGCGC+CGG | + | chr4_1:54313665-54313684 | Msa0556230:CDS | 80.0% |
| ! | GCCGCTGCTAGACGCGCCGG+CGG | + | chr4_1:54313668-54313687 | Msa0556230:CDS | 80.0% |
| ! | CCCGCCGGCGCGTCTAGCAG+CGG | - | chr4_1:54313672-54313691 | None:intergenic | 80.0% |
| !! | CCGCTGCTAGACGCGCCGGC+GGG | + | chr4_1:54313669-54313688 | Msa0556230:CDS | 80.0% |
| !! | GACGCGCCGGCGGGAACGAG+TGG | + | chr4_1:54313678-54313697 | Msa0556230:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 54313299 | 54317353 | 54313299 | ID=Msa0556230;Name=Msa0556230 |
| chr4_1 | mRNA | 54313299 | 54317353 | 54313299 | ID=Msa0556230-mRNA-1;Parent=Msa0556230;Name=Msa0556230-mRNA-1;_AED=0.38;_eAED=0.44;_QI=228|0.33|0.25|0.75|1|1|4|0|231 |
| chr4_1 | exon | 54313299 | 54313859 | 54313299 | ID=Msa0556230-mRNA-1:exon:15956;Parent=Msa0556230-mRNA-1 |
| chr4_1 | exon | 54314262 | 54314408 | 54314262 | ID=Msa0556230-mRNA-1:exon:15957;Parent=Msa0556230-mRNA-1 |
| chr4_1 | exon | 54317052 | 54317152 | 54317052 | ID=Msa0556230-mRNA-1:exon:15958;Parent=Msa0556230-mRNA-1 |
| chr4_1 | exon | 54317239 | 54317353 | 54317239 | ID=Msa0556230-mRNA-1:exon:15959;Parent=Msa0556230-mRNA-1 |
| chr4_1 | five_prime_UTR | 54313299 | 54313526 | 54313299 | ID=Msa0556230-mRNA-1:five_prime_utr;Parent=Msa0556230-mRNA-1 |
| chr4_1 | CDS | 54313527 | 54313859 | 54313527 | ID=Msa0556230-mRNA-1:cds;Parent=Msa0556230-mRNA-1 |
| chr4_1 | CDS | 54314262 | 54314408 | 54314262 | ID=Msa0556230-mRNA-1:cds;Parent=Msa0556230-mRNA-1 |
| chr4_1 | CDS | 54317052 | 54317152 | 54317052 | ID=Msa0556230-mRNA-1:cds;Parent=Msa0556230-mRNA-1 |
| chr4_1 | CDS | 54317239 | 54317353 | 54317239 | ID=Msa0556230-mRNA-1:cds;Parent=Msa0556230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
