Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660050 | XP_003630404.1 | 89.183 | 416 | 1 | 1 | 1 | 416 | 54 | 425 | 0.0 | 738 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660050 | sp|A4YGN0|SUCD_METS5 | 39.709 | 413 | 195 | 6 | 1 | 413 | 1 | 359 | 2.27e-78 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0053640 | Msa0660050 | 0.814781 | 1.293809e-51 | -8.615850e-47 |
| Msa0660050 | Msa0706080 | 0.930877 | 8.621207e-94 | -8.615850e-47 |
| Msa0660050 | Msa0706110 | 0.987266 | 1.217107e-169 | -8.615850e-47 |
| Msa0148040 | Msa0660050 | 0.800459 | 1.426946e-48 | -8.615850e-47 |
| Msa0569900 | Msa0660050 | 0.825410 | 4.758802e-54 | -8.615850e-47 |
| Msa0577690 | Msa0660050 | 0.804812 | 1.804972e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660050 | MtrunA17_Chr8g0385221 | 89.183 | 416 | 1 | 1 | 1 | 416 | 54 | 425 | 0.0 | 738 |
| Msa0660050 | MtrunA17_Chr7g0262421 | 27.845 | 413 | 236 | 9 | 2 | 406 | 13 | 371 | 6.66e-40 | 146 |
| Msa0660050 | MtrunA17_Chr1g0183131 | 27.317 | 410 | 240 | 9 | 2 | 405 | 11 | 368 | 1.27e-39 | 145 |
| Msa0660050 | MtrunA17_Chr3g0125961 | 28.605 | 423 | 237 | 15 | 2 | 415 | 12 | 378 | 4.11e-39 | 144 |
| Msa0660050 | MtrunA17_Chr3g0125911 | 28.132 | 423 | 239 | 15 | 2 | 415 | 12 | 378 | 3.92e-38 | 141 |
| Msa0660050 | MtrunA17_Chr3g0125941 | 28.029 | 421 | 238 | 15 | 4 | 415 | 15 | 379 | 6.66e-37 | 138 |
| Msa0660050 | MtrunA17_Chr5g0440521 | 28.029 | 421 | 244 | 11 | 2 | 415 | 21 | 389 | 6.75e-34 | 130 |
| Msa0660050 | MtrunA17_Chr4g0021211 | 26.841 | 421 | 243 | 10 | 2 | 415 | 36 | 398 | 7.00e-31 | 122 |
| Msa0660050 | MtrunA17_Chr6g0478081 | 26.492 | 419 | 247 | 11 | 2 | 415 | 13 | 375 | 7.44e-29 | 116 |
| Msa0660050 | MtrunA17_Chr3g0132351 | 26.540 | 422 | 251 | 11 | 2 | 415 | 19 | 389 | 1.86e-28 | 115 |
| Msa0660050 | MtrunA17_Chr5g0419681 | 25.060 | 419 | 254 | 9 | 2 | 415 | 11 | 374 | 7.27e-27 | 110 |
| Msa0660050 | MtrunA17_Chr7g0242291 | 27.990 | 418 | 233 | 15 | 2 | 406 | 23 | 385 | 1.26e-25 | 107 |
| Msa0660050 | MtrunA17_Chr3g0118441 | 25.485 | 412 | 249 | 11 | 2 | 406 | 16 | 376 | 2.01e-25 | 106 |
| Msa0660050 | MtrunA17_Chr3g0118431 | 31.513 | 238 | 153 | 8 | 178 | 407 | 56 | 291 | 1.23e-21 | 94.4 |
| Msa0660050 | MtrunA17_Chr7g0242301 | 25.879 | 398 | 208 | 10 | 15 | 406 | 1 | 317 | 9.58e-19 | 86.7 |
| Msa0660050 | MtrunA17_Chr6g0474141 | 27.706 | 231 | 151 | 7 | 176 | 400 | 127 | 347 | 8.05e-17 | 81.3 |
| Msa0660050 | MtrunA17_Chr8g0367151 | 25.305 | 328 | 163 | 11 | 15 | 334 | 25 | 278 | 1.23e-13 | 72.0 |
| Msa0660050 | MtrunA17_Chr4g0013331 | 28.862 | 246 | 157 | 7 | 176 | 413 | 137 | 372 | 1.42e-12 | 68.6 |
| Msa0660050 | MtrunA17_Chr2g0281281 | 28.796 | 191 | 131 | 5 | 187 | 376 | 92 | 278 | 2.37e-12 | 67.8 |
| Msa0660050 | MtrunA17_Chr5g0411911 | 24.634 | 410 | 219 | 16 | 15 | 415 | 27 | 355 | 6.60e-12 | 66.6 |
| Msa0660050 | MtrunA17_Chr2g0281301 | 25.275 | 273 | 170 | 8 | 134 | 376 | 23 | 291 | 1.02e-11 | 65.9 |
| Msa0660050 | MtrunA17_Chr8g0383721 | 35.043 | 117 | 65 | 6 | 14 | 124 | 24 | 135 | 9.38e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660050 | AT5G63620.1 | 74.279 | 416 | 63 | 2 | 1 | 416 | 56 | 427 | 0.0 | 632 |
| Msa0660050 | AT5G63620.2 | 73.798 | 416 | 65 | 2 | 1 | 416 | 56 | 427 | 0.0 | 629 |
| Msa0660050 | AT5G63620.3 | 71.186 | 295 | 41 | 1 | 1 | 295 | 56 | 306 | 5.49e-152 | 433 |
| Msa0660050 | AT5G43940.1 | 27.208 | 419 | 246 | 10 | 2 | 414 | 11 | 376 | 2.97e-39 | 145 |
| Msa0660050 | AT5G43940.2 | 27.338 | 417 | 244 | 10 | 4 | 414 | 25 | 388 | 5.97e-39 | 144 |
| Msa0660050 | AT1G77120.1 | 27.660 | 423 | 241 | 13 | 2 | 415 | 11 | 377 | 1.78e-37 | 140 |
| Msa0660050 | AT4G22110.2 | 30.602 | 415 | 225 | 12 | 2 | 406 | 18 | 379 | 2.29e-36 | 137 |
| Msa0660050 | AT4G22110.1 | 30.602 | 415 | 225 | 12 | 2 | 406 | 18 | 379 | 2.29e-36 | 137 |
| Msa0660050 | AT1G64710.1 | 26.034 | 411 | 249 | 8 | 2 | 406 | 11 | 372 | 3.54e-36 | 137 |
| Msa0660050 | AT1G64710.2 | 25.879 | 398 | 240 | 8 | 15 | 406 | 1 | 349 | 2.13e-34 | 131 |
| Msa0660050 | AT5G42250.1 | 27.316 | 421 | 248 | 11 | 2 | 415 | 20 | 389 | 4.95e-34 | 131 |
| Msa0660050 | AT1G32780.1 | 27.725 | 422 | 252 | 12 | 2 | 415 | 12 | 388 | 7.39e-34 | 130 |
| Msa0660050 | AT1G22430.2 | 28.916 | 415 | 232 | 12 | 2 | 406 | 17 | 378 | 5.39e-33 | 128 |
| Msa0660050 | AT1G22430.1 | 28.916 | 415 | 232 | 12 | 2 | 406 | 17 | 378 | 5.39e-33 | 128 |
| Msa0660050 | AT5G24760.1 | 26.841 | 421 | 243 | 12 | 2 | 415 | 17 | 379 | 1.28e-31 | 124 |
| Msa0660050 | AT1G22440.1 | 27.078 | 421 | 245 | 12 | 2 | 413 | 15 | 382 | 6.09e-30 | 119 |
| Msa0660050 | AT5G24760.2 | 26.716 | 408 | 234 | 12 | 15 | 415 | 1 | 350 | 1.62e-29 | 118 |
| Msa0660050 | AT5G24760.3 | 26.716 | 408 | 234 | 12 | 15 | 415 | 1 | 350 | 1.62e-29 | 118 |
| Msa0660050 | AT1G64710.3 | 25.449 | 334 | 201 | 6 | 77 | 406 | 14 | 303 | 1.31e-27 | 112 |
| Msa0660050 | AT5G24760.4 | 31.557 | 244 | 158 | 6 | 178 | 415 | 25 | 265 | 6.03e-24 | 100 |
| Msa0660050 | AT4G22110.3 | 30.662 | 287 | 148 | 6 | 2 | 286 | 18 | 255 | 1.87e-23 | 99.8 |
| Msa0660050 | AT1G22430.3 | 28.797 | 316 | 170 | 8 | 2 | 312 | 17 | 282 | 7.75e-23 | 98.6 |
| Msa0660050 | AT1G22430.4 | 28.322 | 286 | 154 | 6 | 2 | 285 | 17 | 253 | 3.55e-21 | 93.6 |
| Msa0660050 | AT1G22430.5 | 28.322 | 286 | 154 | 6 | 2 | 285 | 17 | 253 | 3.55e-21 | 93.6 |
| Msa0660050 | AT5G51970.1 | 26.122 | 245 | 165 | 7 | 176 | 416 | 129 | 361 | 2.63e-14 | 74.3 |
| Msa0660050 | AT5G51970.2 | 26.122 | 245 | 165 | 7 | 176 | 416 | 129 | 361 | 2.63e-14 | 74.3 |
| Msa0660050 | AT4G21580.2 | 27.000 | 200 | 141 | 5 | 183 | 380 | 55 | 251 | 9.74e-13 | 68.9 |
| Msa0660050 | AT5G61510.2 | 28.390 | 236 | 155 | 7 | 186 | 413 | 117 | 346 | 1.36e-12 | 68.9 |
| Msa0660050 | AT4G21580.1 | 27.000 | 200 | 141 | 5 | 183 | 380 | 88 | 284 | 1.76e-12 | 68.6 |
| Msa0660050 | AT5G61510.1 | 30.481 | 187 | 122 | 6 | 172 | 354 | 158 | 340 | 3.14e-12 | 68.2 |
| Msa0660050 | AT2G21730.1 | 35.593 | 118 | 63 | 6 | 15 | 127 | 19 | 128 | 6.73e-11 | 63.9 |
Find 124 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTAACCTTTCTATGGTTT+TGG | 0.175052 | 4_3:+70562867 | None:intergenic |
| AAAATAATTGGCAAATTTAT+AGG | 0.215037 | 4_3:-70562236 | Msa0660050:CDS |
| GGTGATACTGTTGCTGTTAT+TGG | 0.219498 | 4_3:-70562044 | Msa0660050:CDS |
| CTGGCACAAGCTGGTTCTTT+AGG | 0.246946 | 4_3:-70561367 | Msa0660050:CDS |
| AGAGTAGACTCCTTTATAAT+TGG | 0.267174 | 4_3:-70562266 | Msa0660050:CDS |
| ATTGGAATACTGAAAATAAT+TGG | 0.285996 | 4_3:-70562248 | Msa0660050:CDS |
| ACCGATATACATGTATAGTA+TGG | 0.286726 | 4_3:-70562210 | Msa0660050:CDS |
| TGTGAACAGATAAAAGTTAT+TGG | 0.299278 | 4_3:-70560794 | Msa0660050:intron |
| TCGAGTTTCACCATCGTATA+AGG | 0.300970 | 4_3:+70562485 | None:intergenic |
| ACTGTTGCTGTTATTGGAAC+TGG | 0.304388 | 4_3:-70562038 | Msa0660050:CDS |
| TTTCAGTATTCCAATTATAA+AGG | 0.312430 | 4_3:+70562256 | None:intergenic |
| GATGAGAAGTTCACCAGCTT+TGG | 0.318763 | 4_3:+70563228 | None:intergenic |
| TATACCGAGTCTGCAATTCT+AGG | 0.324055 | 4_3:-70562122 | Msa0660050:CDS |
| TCGGTATATGGCATTGAGTT+TGG | 0.337585 | 4_3:+70562137 | None:intergenic |
| CCAATTGGATCTCGAGTTGT+TGG | 0.344296 | 4_3:-70562685 | Msa0660050:CDS |
| TTCAATGGTGAGAGGTTTGT+TGG | 0.348495 | 4_3:+70563270 | None:intergenic |
| AACTTCACGCAGGAAATTAC+TGG | 0.359885 | 4_3:-70561493 | Msa0660050:intron |
| GATGTTGCTGTTGAAGCCTT+AGG | 0.362906 | 4_3:-70561457 | Msa0660050:CDS |
| TTAATTAGATTGGCAGAAAC+AGG | 0.368222 | 4_3:-70560734 | Msa0660050:CDS |
| ATAAAAGTTATTGGCTCATA+TGG | 0.373792 | 4_3:-70560785 | Msa0660050:CDS |
| ATGAGAAGTTCACCAGCTTT+GGG | 0.377738 | 4_3:+70563229 | None:intergenic |
| TATAATTGCTGTTGATGTTC+AGG | 0.379502 | 4_3:-70561746 | Msa0660050:CDS |
| GGAGTCAGGCAAAGCATTCC+AGG | 0.386069 | 4_3:-70560666 | Msa0660050:CDS |
| TCTTGAAAAGGTTGTCTTGT+TGG | 0.386179 | 4_3:-70563420 | Msa0660050:five_prime_UTR |
| TCTTCCAAAGTTAATTAGAT+TGG | 0.387780 | 4_3:-70560744 | Msa0660050:CDS |
| CTGCAGATAGCTAGAGCATT+TGG | 0.389366 | 4_3:-70561778 | Msa0660050:CDS |
| AGAATTGCAGACTCGGTATA+TGG | 0.391325 | 4_3:+70562125 | None:intergenic |
| GTTGTGGGCCATGAGATTAC+TGG | 0.411881 | 4_3:-70562922 | Msa0660050:CDS |
| GATTGTTTCAGGCTTCCAAT+TGG | 0.413947 | 4_3:-70562700 | Msa0660050:intron |
| CTGTTGCTGTTATTGGAACT+GGG | 0.417859 | 4_3:-70562037 | Msa0660050:CDS |
| CCCATACTATACATGTATAT+CGG | 0.418017 | 4_3:+70562209 | None:intergenic |
| ATAGTATAGCTCTACATTCC+AGG | 0.421704 | 4_3:-70560602 | Msa0660050:exon |
| TGAATCAAGTAAGAAGTAAG+AGG | 0.421869 | 4_3:+70562437 | None:intergenic |
| TTGTTTCATTTCAGTTTCAT+TGG | 0.430102 | 4_3:-70563520 | Msa0660050:five_prime_UTR |
| TCTGCCAATCTAATTAACTT+TGG | 0.433236 | 4_3:+70560740 | None:intergenic |
| TCATAAAATAACTGATTGTA+AGG | 0.434577 | 4_3:-70560467 | Msa0660050:three_prime_UTR |
| GCTCATATGGAGGGAGGGCT+AGG | 0.438318 | 4_3:-70560772 | Msa0660050:CDS |
| CGCTGCACAAAAGCATTGCC+TGG | 0.444811 | 4_3:+70560584 | None:intergenic |
| GGAGGAAAAGCAGTGATGAT+TGG | 0.449002 | 4_3:-70561391 | Msa0660050:CDS |
| ATCGCAACAACTTCTTGAAA+AGG | 0.450013 | 4_3:-70563432 | Msa0660050:five_prime_UTR |
| TGCAACTCACACAATAAATT+CGG | 0.452277 | 4_3:-70561692 | Msa0660050:CDS |
| TTTGCTTATAACCGCGCAAA+AGG | 0.453633 | 4_3:-70562510 | Msa0660050:CDS |
| ACCAACAGCTTCTGTGTGAA+TGG | 0.454170 | 4_3:+70563339 | None:intergenic |
| ACAGAAGCTGTTGGTGGTGT+TGG | 0.457231 | 4_3:-70563331 | Msa0660050:five_prime_UTR |
| CGACTGTTTCTTCGAGGAAG+TGG | 0.460944 | 4_3:-70562465 | Msa0660050:CDS |
| GAAACAGGTATCTTCGACCT+TGG | 0.461531 | 4_3:-70560719 | Msa0660050:CDS |
| TCAATGGTGAGAGGTTTGTT+GGG | 0.468644 | 4_3:+70563271 | None:intergenic |
| AGCTAGAGCATTTGGTGCCT+CGG | 0.473664 | 4_3:-70561770 | Msa0660050:CDS |
| CCAACAACTCGAGATCCAAT+TGG | 0.477791 | 4_3:+70562685 | None:intergenic |
| TTCTAAGTGAGATTGAGAAA+TGG | 0.478336 | 4_3:-70563481 | Msa0660050:five_prime_UTR |
| TTTCAGTTTCATTGGAAGAT+CGG | 0.481224 | 4_3:-70563512 | Msa0660050:five_prime_UTR |
| CATATTCCTCGTCCCAAAGC+TGG | 0.483522 | 4_3:-70563241 | Msa0660050:CDS |
| AATACCGCCAATGCATTTGC+TGG | 0.484950 | 4_3:+70562161 | None:intergenic |
| AGTTCACCAGCTTTGGGACG+AGG | 0.494387 | 4_3:+70563235 | None:intergenic |
| TACAATCATTTCACATGTAT+CGG | 0.496233 | 4_3:+70562407 | None:intergenic |
| CATGCAGCCGAAGTGCGCCC+TGG | 0.499244 | 4_3:-70562065 | Msa0660050:CDS |
| ATGTTGCTGTTGAAGCCTTA+GGG | 0.501604 | 4_3:-70561456 | Msa0660050:CDS |
| AGCTGGTTCTTTAGGAGAGG+TGG | 0.503154 | 4_3:-70561359 | Msa0660050:CDS |
| AGACACCTATATGTGTTCTC+AGG | 0.510626 | 4_3:+70560517 | None:intergenic |
| CAATGTTACCTTTGAACAGT+AGG | 0.517503 | 4_3:+70562633 | None:intergenic |
| AGGAATATGAAATTCTTCAA+TGG | 0.521033 | 4_3:+70563255 | None:intergenic |
| TTCTTGTAACAGCATGGCCA+AGG | 0.522537 | 4_3:+70560702 | None:intergenic |
| AAATAGACTTGTTCGCAGAA+AGG | 0.523418 | 4_3:-70561332 | Msa0660050:intron |
| GAAACTCGACTGTTTCTTCG+AGG | 0.525121 | 4_3:-70562471 | Msa0660050:CDS |
| CAGGAAATTACTGGTGGAAA+GGG | 0.526933 | 4_3:-70561484 | Msa0660050:CDS |
| ACAACACAAGGACTTGAAAA+CGG | 0.537012 | 4_3:+70562940 | None:intergenic |
| CGGCCATATGTCTCACACAT+TGG | 0.547239 | 4_3:-70560560 | Msa0660050:three_prime_UTR |
| GCAGGAAATTACTGGTGGAA+AGG | 0.554988 | 4_3:-70561485 | Msa0660050:intron |
| CCGATATACATGTATAGTAT+GGG | 0.556704 | 4_3:-70562209 | Msa0660050:CDS |
| AGTGGTGAAAGACTCGTCAT+TGG | 0.558258 | 4_3:-70560389 | Msa0660050:three_prime_UTR |
| ACAGCACCACGCATGTAAGA+TGG | 0.560649 | 4_3:+70563304 | None:intergenic |
| GCAAAAGGAACCTTATACGA+TGG | 0.560670 | 4_3:-70562495 | Msa0660050:CDS |
| CTGATTCCAAAACCATAGAA+AGG | 0.561548 | 4_3:-70562873 | Msa0660050:intron |
| CTAGAGAAAGCAAAGACACT+TGG | 0.562324 | 4_3:-70561715 | Msa0660050:CDS |
| ATCTCATGGCCCACAACACA+AGG | 0.562994 | 4_3:+70562928 | None:intergenic |
| TCTGATCTTCATGTCATGAA+AGG | 0.564745 | 4_3:-70562970 | Msa0660050:CDS |
| AAATGTCTGTGGTCTCCCTA+AGG | 0.567546 | 4_3:+70561441 | None:intergenic |
| TGCACACAAAGTGTGAAAGA+TGG | 0.567900 | 4_3:-70561412 | Msa0660050:CDS |
| ACTCCAATGTGTGAGACATA+TGG | 0.568581 | 4_3:+70560557 | None:intergenic |
| TCCATTCACACAGAAGCTGT+TGG | 0.570592 | 4_3:-70563340 | Msa0660050:five_prime_UTR |
| AAAGTTATTGGCTCATATGG+AGG | 0.577253 | 4_3:-70560782 | Msa0660050:CDS |
| TTTGCATCTTGCTCATGTAG+TGG | 0.582769 | 4_3:-70560407 | Msa0660050:three_prime_UTR |
| TGAAATTCTTCAATGGTGAG+AGG | 0.583588 | 4_3:+70563262 | None:intergenic |
| TGTTGAAGCTGATGCATGTA+CGG | 0.583923 | 4_3:-70563365 | Msa0660050:five_prime_UTR |
| TCACACAATAAATTCGGCTA+AGG | 0.585756 | 4_3:-70561686 | Msa0660050:CDS |
| ATTCACACAGAAGCTGTTGG+TGG | 0.585825 | 4_3:-70563337 | Msa0660050:five_prime_UTR |
| CTCACACATTGGAGTTGCAA+AGG | 0.592098 | 4_3:-70560549 | Msa0660050:three_prime_UTR |
| AGTATCACCAGGGCGCACTT+CGG | 0.593810 | 4_3:+70562058 | None:intergenic |
| CAACTTCACCAGTAATCTCA+TGG | 0.594487 | 4_3:+70562914 | None:intergenic |
| ACAAGCTGGTTCTTTAGGAG+AGG | 0.597825 | 4_3:-70561362 | Msa0660050:CDS |
| TGTTGCTGTTATTGGAACTG+GGG | 0.602671 | 4_3:-70562036 | Msa0660050:CDS |
| CAACTGTTCCTACTGTTCAA+AGG | 0.602922 | 4_3:-70562641 | Msa0660050:intron |
| TGAAATGAAACAAAACAAAG+TGG | 0.605297 | 4_3:+70563530 | None:intergenic |
| ACATCCTAGAATTGCAGACT+CGG | 0.607209 | 4_3:+70562118 | None:intergenic |
| AAGTTATTGGCTCATATGGA+GGG | 0.607746 | 4_3:-70560781 | Msa0660050:CDS |
| GGAGCCTTCATTATGCCTTG+CGG | 0.609397 | 4_3:-70562664 | Msa0660050:CDS |
| TGGCATCTGCACTAGTTCGT+AGG | 0.610288 | 4_3:-70563461 | Msa0660050:five_prime_UTR |
| TGTGCCAGCAAATGCATTGG+CGG | 0.610816 | 4_3:-70562165 | Msa0660050:CDS |
| CATTGGAGTTGCAAAGGTGT+TGG | 0.610873 | 4_3:-70560543 | Msa0660050:three_prime_UTR |
| ATGATTGGACTGGCACAAGC+TGG | 0.611907 | 4_3:-70561376 | Msa0660050:CDS |
| GTTGCTGTTATTGGAACTGG+GGG | 0.615280 | 4_3:-70562035 | Msa0660050:CDS |
| ATATACATGTATAGTATGGG+AGG | 0.616452 | 4_3:-70562206 | Msa0660050:CDS |
| ATAACAGCAACAGTATCACC+AGG | 0.620053 | 4_3:+70562047 | None:intergenic |
| AAGCTTCGCACAGATCATCA+TGG | 0.622065 | 4_3:+70562535 | None:intergenic |
| GTTGCCGCAAGGCATAATGA+AGG | 0.623436 | 4_3:+70562660 | None:intergenic |
| AAAAGCAGTGATGATTGGAC+TGG | 0.624735 | 4_3:-70561386 | Msa0660050:CDS |
| GTGCACTGAGCAAATGTCTG+TGG | 0.625723 | 4_3:+70561430 | None:intergenic |
| CAGTAGGAACAGTTGCCGCA+AGG | 0.626718 | 4_3:+70562649 | None:intergenic |
| GAATCAAGTAAGAAGTAAGA+GGG | 0.626857 | 4_3:+70562438 | None:intergenic |
| ACTGGTGAAGTTGTTGAACA+TGG | 0.627651 | 4_3:-70562904 | Msa0660050:CDS |
| GAACTTCTCATCAAAACCAA+GGG | 0.629940 | 4_3:-70563217 | Msa0660050:intron |
| TTCACGCAGGAAATTACTGG+TGG | 0.641213 | 4_3:-70561490 | Msa0660050:intron |
| TATACATGTATAGTATGGGA+GGG | 0.642941 | 4_3:-70562205 | Msa0660050:CDS |
| TGAACTTCTCATCAAAACCA+AGG | 0.647879 | 4_3:-70563218 | Msa0660050:CDS |
| TATTGGCTCATATGGAGGGA+GGG | 0.648186 | 4_3:-70560777 | Msa0660050:CDS |
| TTATTGGCTCATATGGAGGG+AGG | 0.648294 | 4_3:-70560778 | Msa0660050:CDS |
| ATCAACAGCAATTATATCCG+AGG | 0.648309 | 4_3:+70561753 | None:intergenic |
| TGTTGTGCCAGCAAATGCAT+TGG | 0.658264 | 4_3:-70562168 | Msa0660050:CDS |
| GGATTGCCATCTTACATGCG+TGG | 0.668555 | 4_3:-70563310 | Msa0660050:exon |
| GGTGTCCTGAGAACACATAT+AGG | 0.669550 | 4_3:-70560522 | Msa0660050:three_prime_UTR |
| GCATTCCAGGATCTCAACGA+AGG | 0.671434 | 4_3:-70560653 | Msa0660050:CDS |
| ACACAAAGTGTGAAAGATGG+AGG | 0.689218 | 4_3:-70561409 | Msa0660050:CDS |
| TCATGACATGAAGATCAGAG+TGG | 0.751085 | 4_3:+70562974 | None:intergenic |
| TAACAGCAACAGTATCACCA+GGG | 0.751466 | 4_3:+70562048 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTGATATTGTTATGAT+TGG | - | chr4_3:70560811-70560830 | Msa0660050:intron | 15.0% |
| !! | AAAATAATTGGCAAATTTAT+AGG | - | chr4_3:70561634-70561653 | Msa0660050:intron | 15.0% |
| !! | TAGAGAAAACAATTAAATAA+AGG | + | chr4_3:70562358-70562377 | None:intergenic | 15.0% |
| !! | AAAAAACTTTAACCTTTCTA+TGG | + | chr4_3:70561012-70561031 | None:intergenic | 20.0% |
| !! | TAAATTAAGCTTGTCTATAT+GGG | + | chr4_3:70561502-70561521 | None:intergenic | 20.0% |
| !! | ATAAATTAAGCTTGTCTATA+TGG | + | chr4_3:70561503-70561522 | None:intergenic | 20.0% |
| !! | TTTCAGTATTCCAATTATAA+AGG | + | chr4_3:70561617-70561636 | None:intergenic | 20.0% |
| !! | ATTGGAATACTGAAAATAAT+TGG | - | chr4_3:70561622-70561641 | Msa0660050:intron | 20.0% |
| !!! | TATACAAGTATCTTTTCAAT+GGG | + | chr4_3:70562215-70562234 | None:intergenic | 20.0% |
| !!! | ATATACAAGTATCTTTTCAA+TGG | + | chr4_3:70562216-70562235 | None:intergenic | 20.0% |
| !! | GATTAAATTGTTCATATCAA+GGG | - | chr4_3:70562848-70562867 | Msa0660050:intron | 20.0% |
| !!! | ACATACAAATTTAATTTGCT+TGG | + | chr4_3:70563059-70563078 | None:intergenic | 20.0% |
| !!! | TTACAATCAGTTATTTTATG+AGG | + | chr4_3:70563404-70563423 | None:intergenic | 20.0% |
| !! | TCATAAAATAACTGATTGTA+AGG | - | chr4_3:70563403-70563422 | Msa0660050:five_prime_UTR | 20.0% |
| ! | TGAAATGAAACAAAACAAAG+TGG | + | chr4_3:70560343-70560362 | None:intergenic | 25.0% |
| ! | TTGTTTCATTTCAGTTTCAT+TGG | - | chr4_3:70560350-70560369 | Msa0660050:three_prime_UTR | 25.0% |
| ! | AGGAATATGAAATTCTTCAA+TGG | + | chr4_3:70560618-70560637 | None:intergenic | 25.0% |
| ! | TTTGATATTGTTATGATTGG+TGG | - | chr4_3:70560814-70560833 | Msa0660050:intron | 25.0% |
| !! | TTATGATTGGTGGTTATTAT+TGG | - | chr4_3:70560824-70560843 | Msa0660050:intron | 25.0% |
| ! | TACAATCATTTCACATGTAT+CGG | + | chr4_3:70561466-70561485 | None:intergenic | 25.0% |
| ! | TAACTAAATCAATTGTCAAG+TGG | - | chr4_3:70561871-70561890 | Msa0660050:intron | 25.0% |
| ! | GAAACAGCAAAAATAGAAAA+AGG | + | chr4_3:70561936-70561955 | None:intergenic | 25.0% |
| ! | AAATGATTCAAGATAACCTT+TGG | - | chr4_3:70562825-70562844 | Msa0660050:intron | 25.0% |
| ! | AATGATTCAAGATAACCTTT+GGG | - | chr4_3:70562826-70562845 | Msa0660050:intron | 25.0% |
| ! | TATGAACAATTTAATCCCAA+AGG | + | chr4_3:70562844-70562863 | None:intergenic | 25.0% |
| ! | GGATTAAATTGTTCATATCA+AGG | - | chr4_3:70562847-70562866 | Msa0660050:intron | 25.0% |
| ! | ATGAATTTGTCAAATAAGTG+AGG | + | chr4_3:70563036-70563055 | None:intergenic | 25.0% |
| ! | TGTGAACAGATAAAAGTTAT+TGG | - | chr4_3:70563076-70563095 | Msa0660050:intron | 25.0% |
| !!! | ATAAAAGTTATTGGCTCATA+TGG | - | chr4_3:70563085-70563104 | Msa0660050:intron | 25.0% |
| ! | TCTTCCAAAGTTAATTAGAT+TGG | - | chr4_3:70563126-70563145 | Msa0660050:intron | 25.0% |
| !! | TACAAGAAAATACACTTTTG+AGG | - | chr4_3:70563183-70563202 | Msa0660050:intron | 25.0% |
| TTTCAGTTTCATTGGAAGAT+CGG | - | chr4_3:70560358-70560377 | Msa0660050:three_prime_UTR | 30.0% | |
| TTCTAAGTGAGATTGAGAAA+TGG | - | chr4_3:70560389-70560408 | Msa0660050:three_prime_UTR | 30.0% | |
| ! | AGCTGCAATATACAAGTTTT+AGG | + | chr4_3:70560757-70560776 | None:intergenic | 30.0% |
| TGTATATTGCAGCTTAATTG+TGG | - | chr4_3:70560763-70560782 | Msa0660050:CDS | 30.0% | |
| !!! | AGATGTGATTTTTTGAATGC+AGG | - | chr4_3:70560861-70560880 | Msa0660050:intron | 30.0% |
| ! | CTTTAACCTTTCTATGGTTT+TGG | + | chr4_3:70561006-70561025 | None:intergenic | 30.0% |
| AGCATTATCACACAAAAATG+TGG | + | chr4_3:70561069-70561088 | None:intergenic | 30.0% | |
| AGCAAAAAGGAATAACAAGT+AGG | - | chr4_3:70561138-70561157 | Msa0660050:intron | 30.0% | |
| TCCATTTGTCAACTGAATTA+TGG | - | chr4_3:70561275-70561294 | Msa0660050:intron | 30.0% | |
| ACCATAATTCAGTTGACAAA+TGG | + | chr4_3:70561279-70561298 | None:intergenic | 30.0% | |
| GAATCAAGTAAGAAGTAAGA+GGG | + | chr4_3:70561435-70561454 | None:intergenic | 30.0% | |
| TGAATCAAGTAAGAAGTAAG+AGG | + | chr4_3:70561436-70561455 | None:intergenic | 30.0% | |
| GACTATGTAAACACATACTT+AGG | + | chr4_3:70561527-70561546 | None:intergenic | 30.0% | |
| AGAGTAGACTCCTTTATAAT+TGG | - | chr4_3:70561604-70561623 | Msa0660050:intron | 30.0% | |
| ACCGATATACATGTATAGTA+TGG | - | chr4_3:70561660-70561679 | Msa0660050:intron | 30.0% | |
| CCCATACTATACATGTATAT+CGG | + | chr4_3:70561664-70561683 | None:intergenic | 30.0% | |
| CCGATATACATGTATAGTAT+GGG | - | chr4_3:70561661-70561680 | Msa0660050:intron | 30.0% | |
| ATATACATGTATAGTATGGG+AGG | - | chr4_3:70561664-70561683 | Msa0660050:CDS | 30.0% | |
| TATACATGTATAGTATGGGA+GGG | - | chr4_3:70561665-70561684 | Msa0660050:CDS | 30.0% | |
| GCAAAAATAGAAAAAGGAAG+TGG | + | chr4_3:70561930-70561949 | None:intergenic | 30.0% | |
| TTCGATAATGCTTGCTTAAA+TGG | - | chr4_3:70561953-70561972 | Msa0660050:intron | 30.0% | |
| AAGCGGTGATAAAGTTAAAA+TGG | + | chr4_3:70562064-70562083 | None:intergenic | 30.0% | |
| ! | TATAATTGCTGTTGATGTTC+AGG | - | chr4_3:70562124-70562143 | Msa0660050:CDS | 30.0% |
| TGCAACTCACACAATAAATT+CGG | - | chr4_3:70562178-70562197 | Msa0660050:CDS | 30.0% | |
| !!! | ACCACTAGTTTTATTCATGT+TGG | - | chr4_3:70562624-70562643 | Msa0660050:intron | 30.0% |
| TCCAACATGAATAAAACTAG+TGG | + | chr4_3:70562628-70562647 | None:intergenic | 30.0% | |
| ! | TAAGAATTAGGTTGTACAAG+TGG | - | chr4_3:70562776-70562795 | Msa0660050:intron | 30.0% |
| TTGTTCAACAGTTCAAGTAA+AGG | + | chr4_3:70562807-70562826 | None:intergenic | 30.0% | |
| CACTCAATTGAGTTTAAAAG+CGG | + | chr4_3:70562874-70562893 | None:intergenic | 30.0% | |
| TCTGCCAATCTAATTAACTT+TGG | + | chr4_3:70563133-70563152 | None:intergenic | 30.0% | |
| TTAATTAGATTGGCAGAAAC+AGG | - | chr4_3:70563136-70563155 | Msa0660050:intron | 30.0% | |
| ! | TGTATTTTCTTGTAACAGCA+TGG | + | chr4_3:70563177-70563196 | None:intergenic | 30.0% |
| ATCGCAACAACTTCTTGAAA+AGG | - | chr4_3:70560438-70560457 | Msa0660050:three_prime_UTR | 35.0% | |
| TCTTGAAAAGGTTGTCTTGT+TGG | - | chr4_3:70560450-70560469 | Msa0660050:three_prime_UTR | 35.0% | |
| TGAAATTCTTCAATGGTGAG+AGG | + | chr4_3:70560611-70560630 | None:intergenic | 35.0% | |
| TGAACTTCTCATCAAAACCA+AGG | - | chr4_3:70560652-70560671 | Msa0660050:CDS | 35.0% | |
| GAACTTCTCATCAAAACCAA+GGG | - | chr4_3:70560653-70560672 | Msa0660050:CDS | 35.0% | |
| AGAGAGATAAACAATACCCT+TGG | + | chr4_3:70560672-70560691 | None:intergenic | 35.0% | |
| !!! | GATTTTTTGAATGCAGGATG+TGG | - | chr4_3:70560867-70560886 | Msa0660050:intron | 35.0% |
| TCTGATCTTCATGTCATGAA+AGG | - | chr4_3:70560900-70560919 | Msa0660050:intron | 35.0% | |
| ACAACACAAGGACTTGAAAA+CGG | + | chr4_3:70560933-70560952 | None:intergenic | 35.0% | |
| !!! | TTTTCAAGTCCTTGTGTTGT+GGG | - | chr4_3:70560933-70560952 | Msa0660050:intron | 35.0% |
| CTGATTCCAAAACCATAGAA+AGG | - | chr4_3:70560997-70561016 | Msa0660050:intron | 35.0% | |
| ! | GTTCTTGATGACTAGCAAAA+AGG | - | chr4_3:70561125-70561144 | Msa0660050:intron | 35.0% |
| GGATTGTTCTTGATTGTTTC+AGG | - | chr4_3:70561159-70561178 | Msa0660050:intron | 35.0% | |
| CAATGTTACCTTTGAACAGT+AGG | + | chr4_3:70561240-70561259 | None:intergenic | 35.0% | |
| TGTCAACTGAATTATGGTCT+CGG | - | chr4_3:70561281-70561300 | Msa0660050:intron | 35.0% | |
| GTGTTTATGCTGTCTACAAA+CGG | - | chr4_3:70561303-70561322 | Msa0660050:intron | 35.0% | |
| ! | AGTCATAGTTTTCTCTGCTA+TGG | - | chr4_3:70561543-70561562 | Msa0660050:intron | 35.0% |
| !!! | TGTGCTGTTTTTACTGCTTA+TGG | - | chr4_3:70561772-70561791 | Msa0660050:CDS | 35.0% |
| ! | TTTTACTGCTTATGGTGCAA+TGG | - | chr4_3:70561780-70561799 | Msa0660050:CDS | 35.0% |
| ! | TTTTCATATATCCGAGCAGT+AGG | - | chr4_3:70562016-70562035 | Msa0660050:intron | 35.0% |
| ATCAACAGCAATTATATCCG+AGG | + | chr4_3:70562120-70562139 | None:intergenic | 35.0% | |
| TCACACAATAAATTCGGCTA+AGG | - | chr4_3:70562184-70562203 | Msa0660050:CDS | 35.0% | |
| GTTCTGGCAATTAAACAATG+AGG | + | chr4_3:70562253-70562272 | None:intergenic | 35.0% | |
| ! | AAATAGACTTGTTCGCAGAA+AGG | - | chr4_3:70562538-70562557 | Msa0660050:CDS | 35.0% |
| ! | TATTCCCATACCCCTAATTT+TGG | + | chr4_3:70562758-70562777 | None:intergenic | 35.0% |
| !! | AAAGTTATTGGCTCATATGG+AGG | - | chr4_3:70563088-70563107 | Msa0660050:intron | 35.0% |
| !! | AAGTTATTGGCTCATATGGA+GGG | - | chr4_3:70563089-70563108 | Msa0660050:intron | 35.0% |
| !! | AAATACACTTTTGAGGAGTC+AGG | - | chr4_3:70563190-70563209 | Msa0660050:intron | 35.0% |
| CTCAACGAAGGAAAAATAGT+CGG | - | chr4_3:70563229-70563248 | Msa0660050:CDS | 35.0% | |
| ! | ATAGTATAGCTCTACATTCC+AGG | - | chr4_3:70563268-70563287 | Msa0660050:CDS | 35.0% |
| TGTTGAAGCTGATGCATGTA+CGG | - | chr4_3:70560505-70560524 | Msa0660050:three_prime_UTR | 40.0% | |
| ! | TCAATGGTGAGAGGTTTGTT+GGG | + | chr4_3:70560602-70560621 | None:intergenic | 40.0% |
| TTCAATGGTGAGAGGTTTGT+TGG | + | chr4_3:70560603-70560622 | None:intergenic | 40.0% | |
| ATGAGAAGTTCACCAGCTTT+GGG | + | chr4_3:70560644-70560663 | None:intergenic | 40.0% | |
| TTGCAGCTTAATTGTGGTTG+TGG | - | chr4_3:70560769-70560788 | Msa0660050:CDS | 40.0% | |
| TCATGACATGAAGATCAGAG+TGG | + | chr4_3:70560899-70560918 | None:intergenic | 40.0% | |
| !!! | GTTTTCAAGTCCTTGTGTTG+TGG | - | chr4_3:70560932-70560951 | Msa0660050:intron | 40.0% |
| CAACTTCACCAGTAATCTCA+TGG | + | chr4_3:70560959-70560978 | None:intergenic | 40.0% | |
| ACTGGTGAAGTTGTTGAACA+TGG | - | chr4_3:70560966-70560985 | Msa0660050:intron | 40.0% | |
| GATTGTTTCAGGCTTCCAAT+TGG | - | chr4_3:70561170-70561189 | Msa0660050:intron | 40.0% | |
| CAACTGTTCCTACTGTTCAA+AGG | - | chr4_3:70561229-70561248 | Msa0660050:intron | 40.0% | |
| TTTGCTTATAACCGCGCAAA+AGG | - | chr4_3:70561360-70561379 | Msa0660050:CDS | 40.0% | |
| GCAAAAGGAACCTTATACGA+TGG | - | chr4_3:70561375-70561394 | Msa0660050:CDS | 40.0% | |
| TCGAGTTTCACCATCGTATA+AGG | + | chr4_3:70561388-70561407 | None:intergenic | 40.0% | |
| ! | TCGGTATATGGCATTGAGTT+TGG | + | chr4_3:70561736-70561755 | None:intergenic | 40.0% |
| ! | AGAATTGCAGACTCGGTATA+TGG | + | chr4_3:70561748-70561767 | None:intergenic | 40.0% |
| TATACCGAGTCTGCAATTCT+AGG | - | chr4_3:70561748-70561767 | Msa0660050:CDS | 40.0% | |
| ACATCCTAGAATTGCAGACT+CGG | + | chr4_3:70561755-70561774 | None:intergenic | 40.0% | |
| TAACAGCAACAGTATCACCA+GGG | + | chr4_3:70561825-70561844 | None:intergenic | 40.0% | |
| ATAACAGCAACAGTATCACC+AGG | + | chr4_3:70561826-70561845 | None:intergenic | 40.0% | |
| ! | GGTGATACTGTTGCTGTTAT+TGG | - | chr4_3:70561826-70561845 | Msa0660050:intron | 40.0% |
| ! | ACTGTTGCTGTTATTGGAAC+TGG | - | chr4_3:70561832-70561851 | Msa0660050:intron | 40.0% |
| ! | CTGTTGCTGTTATTGGAACT+GGG | - | chr4_3:70561833-70561852 | Msa0660050:intron | 40.0% |
| ! | TGTTGCTGTTATTGGAACTG+GGG | - | chr4_3:70561834-70561853 | Msa0660050:intron | 40.0% |
| CTAGAGAAAGCAAAGACACT+TGG | - | chr4_3:70562155-70562174 | Msa0660050:CDS | 40.0% | |
| TGTTAGGAGCTAATAGACAG+AGG | + | chr4_3:70562290-70562309 | None:intergenic | 40.0% | |
| TTATGCACGATAGTGTGAGT+GGG | + | chr4_3:70562316-70562335 | None:intergenic | 40.0% | |
| TTTATGCACGATAGTGTGAG+TGG | + | chr4_3:70562317-70562336 | None:intergenic | 40.0% | |
| ! | TGTTTTCTCTAACTTCACGC+AGG | - | chr4_3:70562367-70562386 | Msa0660050:intron | 40.0% |
| AACTTCACGCAGGAAATTAC+TGG | - | chr4_3:70562377-70562396 | Msa0660050:intron | 40.0% | |
| CAGGAAATTACTGGTGGAAA+GGG | - | chr4_3:70562386-70562405 | Msa0660050:intron | 40.0% | |
| ! | ATGTTGCTGTTGAAGCCTTA+GGG | - | chr4_3:70562414-70562433 | Msa0660050:CDS | 40.0% |
| TGCACACAAAGTGTGAAAGA+TGG | - | chr4_3:70562458-70562477 | Msa0660050:CDS | 40.0% | |
| ACACAAAGTGTGAAAGATGG+AGG | - | chr4_3:70562461-70562480 | Msa0660050:CDS | 40.0% | |
| AAAAGCAGTGATGATTGGAC+TGG | - | chr4_3:70562484-70562503 | Msa0660050:CDS | 40.0% | |
| TCAAGCCAAAATTAGGGGTA+TGG | - | chr4_3:70562750-70562769 | Msa0660050:intron | 40.0% | |
| ! | CAAGCCAAAATTAGGGGTAT+GGG | - | chr4_3:70562751-70562770 | Msa0660050:intron | 40.0% |
| GGGGTATGGGAATAAGAATT+AGG | - | chr4_3:70562764-70562783 | Msa0660050:intron | 40.0% | |
| ACTTCACGTCAATTCTGCTT+TGG | + | chr4_3:70562959-70562978 | None:intergenic | 40.0% | |
| ! | TAAGTGAGGTGCTACACTAA+AGG | + | chr4_3:70563022-70563041 | None:intergenic | 40.0% |
| ! | TTTTTCCTTCGTTGAGATCC+TGG | + | chr4_3:70563225-70563244 | None:intergenic | 40.0% |
| ACGAAGGAAAAATAGTCGGT+CGG | - | chr4_3:70563233-70563252 | Msa0660050:CDS | 40.0% | |
| ACTCCAATGTGTGAGACATA+TGG | + | chr4_3:70563316-70563335 | None:intergenic | 40.0% | |
| AGACACCTATATGTGTTCTC+AGG | + | chr4_3:70563356-70563375 | None:intergenic | 40.0% | |
| TTTGCATCTTGCTCATGTAG+TGG | - | chr4_3:70563463-70563482 | Msa0660050:five_prime_UTR | 40.0% | |
| TCCATTCACACAGAAGCTGT+TGG | - | chr4_3:70560530-70560549 | Msa0660050:three_prime_UTR | 45.0% | |
| ACCAACAGCTTCTGTGTGAA+TGG | + | chr4_3:70560534-70560553 | None:intergenic | 45.0% | |
| ATTCACACAGAAGCTGTTGG+TGG | - | chr4_3:70560533-70560552 | Msa0660050:three_prime_UTR | 45.0% | |
| !!! | ACATGCGTGGTGCTGTTTTT+CGG | - | chr4_3:70560573-70560592 | Msa0660050:three_prime_UTR | 45.0% |
| GATGAGAAGTTCACCAGCTT+TGG | + | chr4_3:70560645-70560664 | None:intergenic | 45.0% | |
| CCAACAACTCGAGATCCAAT+TGG | + | chr4_3:70561188-70561207 | None:intergenic | 45.0% | |
| ! | CCAATTGGATCTCGAGTTGT+TGG | - | chr4_3:70561185-70561204 | Msa0660050:intron | 45.0% |
| CTGTCTACAAACGGTATGCA+GGG | - | chr4_3:70561312-70561331 | Msa0660050:intron | 45.0% | |
| AAGCTTCGCACAGATCATCA+TGG | + | chr4_3:70561338-70561357 | None:intergenic | 45.0% | |
| ! | CGTATAAGGTTCCTTTTGCG+CGG | + | chr4_3:70561374-70561393 | None:intergenic | 45.0% |
| ! | GAAACTCGACTGTTTCTTCG+AGG | - | chr4_3:70561399-70561418 | Msa0660050:CDS | 45.0% |
| TGTTGTGCCAGCAAATGCAT+TGG | - | chr4_3:70561702-70561721 | Msa0660050:CDS | 45.0% | |
| AATACCGCCAATGCATTTGC+TGG | + | chr4_3:70561712-70561731 | None:intergenic | 45.0% | |
| ! | GTTGCTGTTATTGGAACTGG+GGG | - | chr4_3:70561835-70561854 | Msa0660050:intron | 45.0% |
| TATCTGCAGACAACTGGAAG+CGG | + | chr4_3:70562081-70562100 | None:intergenic | 45.0% | |
| TCTAGCTATCTGCAGACAAC+TGG | + | chr4_3:70562087-70562106 | None:intergenic | 45.0% | |
| ! | CTGCAGATAGCTAGAGCATT+TGG | - | chr4_3:70562092-70562111 | Msa0660050:CDS | 45.0% |
| TGCCAGAACTCTATCTTGTG+CGG | - | chr4_3:70562264-70562283 | Msa0660050:CDS | 45.0% | |
| TAGTGTGAGTGGGTGATGTT+AGG | + | chr4_3:70562306-70562325 | None:intergenic | 45.0% | |
| TTCACGCAGGAAATTACTGG+TGG | - | chr4_3:70562380-70562399 | Msa0660050:intron | 45.0% | |
| GCAGGAAATTACTGGTGGAA+AGG | - | chr4_3:70562385-70562404 | Msa0660050:intron | 45.0% | |
| ! | GATGTTGCTGTTGAAGCCTT+AGG | - | chr4_3:70562413-70562432 | Msa0660050:CDS | 45.0% |
| AAATGTCTGTGGTCTCCCTA+AGG | + | chr4_3:70562432-70562451 | None:intergenic | 45.0% | |
| GGAGGAAAAGCAGTGATGAT+TGG | - | chr4_3:70562479-70562498 | Msa0660050:CDS | 45.0% | |
| ! | ACAAGCTGGTTCTTTAGGAG+AGG | - | chr4_3:70562508-70562527 | Msa0660050:CDS | 45.0% |
| !!! | CCCTAATTTTGGCTTGAGCA+GGG | + | chr4_3:70562747-70562766 | None:intergenic | 45.0% |
| CCCTGCTCAAGCCAAAATTA+GGG | - | chr4_3:70562744-70562763 | Msa0660050:intron | 45.0% | |
| CCTGCTCAAGCCAAAATTAG+GGG | - | chr4_3:70562745-70562764 | Msa0660050:intron | 45.0% | |
| !! | TTATTGGCTCATATGGAGGG+AGG | - | chr4_3:70563092-70563111 | Msa0660050:intron | 45.0% |
| !! | TATTGGCTCATATGGAGGGA+GGG | - | chr4_3:70563093-70563112 | Msa0660050:intron | 45.0% |
| GAAACAGGTATCTTCGACCT+TGG | - | chr4_3:70563151-70563170 | Msa0660050:intron | 45.0% | |
| TTCTTGTAACAGCATGGCCA+AGG | + | chr4_3:70563171-70563190 | None:intergenic | 45.0% | |
| CGAAGGAAAAATAGTCGGTC+GGG | - | chr4_3:70563234-70563253 | Msa0660050:CDS | 45.0% | |
| CTCACACATTGGAGTTGCAA+AGG | - | chr4_3:70563321-70563340 | Msa0660050:five_prime_UTR | 45.0% | |
| ! | CATTGGAGTTGCAAAGGTGT+TGG | - | chr4_3:70563327-70563346 | Msa0660050:five_prime_UTR | 45.0% |
| GGTGTCCTGAGAACACATAT+AGG | - | chr4_3:70563348-70563367 | Msa0660050:five_prime_UTR | 45.0% | |
| AGTGGTGAAAGACTCGTCAT+TGG | - | chr4_3:70563481-70563500 | Msa0660050:five_prime_UTR | 45.0% | |
| TGGCATCTGCACTAGTTCGT+AGG | - | chr4_3:70560409-70560428 | Msa0660050:three_prime_UTR | 50.0% | |
| !! | ACAGAAGCTGTTGGTGGTGT+TGG | - | chr4_3:70560539-70560558 | Msa0660050:three_prime_UTR | 50.0% |
| GGATTGCCATCTTACATGCG+TGG | - | chr4_3:70560560-70560579 | Msa0660050:three_prime_UTR | 50.0% | |
| ACAGCACCACGCATGTAAGA+TGG | + | chr4_3:70560569-70560588 | None:intergenic | 50.0% | |
| !!! | CATGCGTGGTGCTGTTTTTC+GGG | - | chr4_3:70560574-70560593 | Msa0660050:three_prime_UTR | 50.0% |
| CATATTCCTCGTCCCAAAGC+TGG | - | chr4_3:70560629-70560648 | Msa0660050:CDS | 50.0% | |
| ATCTCATGGCCCACAACACA+AGG | + | chr4_3:70560945-70560964 | None:intergenic | 50.0% | |
| GTTGTGGGCCATGAGATTAC+TGG | - | chr4_3:70560948-70560967 | Msa0660050:intron | 50.0% | |
| GGAGCCTTCATTATGCCTTG+CGG | - | chr4_3:70561206-70561225 | Msa0660050:intron | 50.0% | |
| GTTGCCGCAAGGCATAATGA+AGG | + | chr4_3:70561213-70561232 | None:intergenic | 50.0% | |
| GCTGTCTACAAACGGTATGC+AGG | - | chr4_3:70561311-70561330 | Msa0660050:intron | 50.0% | |
| ! | CGACTGTTTCTTCGAGGAAG+TGG | - | chr4_3:70561405-70561424 | Msa0660050:CDS | 50.0% |
| TGTGCCAGCAAATGCATTGG+CGG | - | chr4_3:70561705-70561724 | Msa0660050:CDS | 50.0% | |
| ! | GTTATTGGAACTGGGGGTGT+TGG | - | chr4_3:70561841-70561860 | Msa0660050:intron | 50.0% |
| GTTGATCAGAGCCTACTGCT+CGG | + | chr4_3:70562030-70562049 | None:intergenic | 50.0% | |
| !! | AGCTAGAGCATTTGGTGCCT+CGG | - | chr4_3:70562100-70562119 | Msa0660050:CDS | 50.0% |
| GTGCACTGAGCAAATGTCTG+TGG | + | chr4_3:70562443-70562462 | None:intergenic | 50.0% | |
| !! | ATGATTGGACTGGCACAAGC+TGG | - | chr4_3:70562494-70562513 | Msa0660050:CDS | 50.0% |
| ! | CTGGCACAAGCTGGTTCTTT+AGG | - | chr4_3:70562503-70562522 | Msa0660050:CDS | 50.0% |
| ! | AGCTGGTTCTTTAGGAGAGG+TGG | - | chr4_3:70562511-70562530 | Msa0660050:CDS | 50.0% |
| GCCCTGCTCAAGCCAAAATT+AGG | - | chr4_3:70562743-70562762 | Msa0660050:intron | 50.0% | |
| !!! | CCCCTAATTTTGGCTTGAGC+AGG | + | chr4_3:70562748-70562767 | None:intergenic | 50.0% |
| GCATTCCAGGATCTCAACGA+AGG | - | chr4_3:70563217-70563236 | Msa0660050:intron | 50.0% | |
| ! | GCAATGCTTTTGTGCAGCGA+CGG | - | chr4_3:70563290-70563309 | Msa0660050:CDS | 50.0% |
| CGGCCATATGTCTCACACAT+TGG | - | chr4_3:70563310-70563329 | Msa0660050:exon | 50.0% | |
| !! | AGTTCACCAGCTTTGGGACG+AGG | + | chr4_3:70560638-70560657 | None:intergenic | 55.0% |
| CAGTAGGAACAGTTGCCGCA+AGG | + | chr4_3:70561224-70561243 | None:intergenic | 55.0% | |
| AGTATCACCAGGGCGCACTT+CGG | + | chr4_3:70561815-70561834 | None:intergenic | 55.0% | |
| !! | GAACTGGGGGTGTTGGTTCT+AGG | - | chr4_3:70561848-70561867 | Msa0660050:intron | 55.0% |
| GGCCGCACAAGATAGAGTTC+TGG | + | chr4_3:70562269-70562288 | None:intergenic | 55.0% | |
| ! | GGAGTCAGGCAAAGCATTCC+AGG | - | chr4_3:70563204-70563223 | Msa0660050:intron | 55.0% |
| !! | CGCTGCACAAAAGCATTGCC+TGG | + | chr4_3:70563289-70563308 | None:intergenic | 55.0% |
| GCTCATATGGAGGGAGGGCT+AGG | - | chr4_3:70563098-70563117 | Msa0660050:intron | 60.0% | |
| CATGCAGCCGAAGTGCGCCC+TGG | - | chr4_3:70561805-70561824 | Msa0660050:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 70560311 | 70563581 | 70560311 | ID=Msa0660050;Name=Msa0660050 |
| chr4_3 | mRNA | 70560311 | 70563581 | 70560311 | ID=Msa0660050-mRNA-1;Parent=Msa0660050;Name=Msa0660050-mRNA-1;_AED=0.13;_eAED=0.13;_QI=264|0.85|0.75|1|1|1|8|305|416 |
| chr4_3 | exon | 70560311 | 70560807 | 70560311 | ID=Msa0660050-mRNA-1:exon:21016;Parent=Msa0660050-mRNA-1 |
| chr4_3 | exon | 70561333 | 70561503 | 70561333 | ID=Msa0660050-mRNA-1:exon:21015;Parent=Msa0660050-mRNA-1 |
| chr4_3 | exon | 70561663 | 70561804 | 70561663 | ID=Msa0660050-mRNA-1:exon:21014;Parent=Msa0660050-mRNA-1 |
| chr4_3 | exon | 70562023 | 70562312 | 70562023 | ID=Msa0660050-mRNA-1:exon:21013;Parent=Msa0660050-mRNA-1 |
| chr4_3 | exon | 70562410 | 70562559 | 70562410 | ID=Msa0660050-mRNA-1:exon:21012;Parent=Msa0660050-mRNA-1 |
| chr4_3 | exon | 70562642 | 70562711 | 70562642 | ID=Msa0660050-mRNA-1:exon:21011;Parent=Msa0660050-mRNA-1 |
| chr4_3 | exon | 70562874 | 70563009 | 70562874 | ID=Msa0660050-mRNA-1:exon:21010;Parent=Msa0660050-mRNA-1 |
| chr4_3 | exon | 70563218 | 70563581 | 70563218 | ID=Msa0660050-mRNA-1:exon:21009;Parent=Msa0660050-mRNA-1 |
| chr4_3 | five_prime_UTR | 70563318 | 70563581 | 70563318 | ID=Msa0660050-mRNA-1:five_prime_utr;Parent=Msa0660050-mRNA-1 |
| chr4_3 | CDS | 70563218 | 70563317 | 70563218 | ID=Msa0660050-mRNA-1:cds;Parent=Msa0660050-mRNA-1 |
| chr4_3 | CDS | 70562874 | 70563009 | 70562874 | ID=Msa0660050-mRNA-1:cds;Parent=Msa0660050-mRNA-1 |
| chr4_3 | CDS | 70562642 | 70562711 | 70562642 | ID=Msa0660050-mRNA-1:cds;Parent=Msa0660050-mRNA-1 |
| chr4_3 | CDS | 70562410 | 70562559 | 70562410 | ID=Msa0660050-mRNA-1:cds;Parent=Msa0660050-mRNA-1 |
| chr4_3 | CDS | 70562023 | 70562312 | 70562023 | ID=Msa0660050-mRNA-1:cds;Parent=Msa0660050-mRNA-1 |
| chr4_3 | CDS | 70561663 | 70561804 | 70561663 | ID=Msa0660050-mRNA-1:cds;Parent=Msa0660050-mRNA-1 |
| chr4_3 | CDS | 70561333 | 70561503 | 70561333 | ID=Msa0660050-mRNA-1:cds;Parent=Msa0660050-mRNA-1 |
| chr4_3 | CDS | 70560616 | 70560807 | 70560616 | ID=Msa0660050-mRNA-1:cds;Parent=Msa0660050-mRNA-1 |
| chr4_3 | three_prime_UTR | 70560311 | 70560615 | 70560311 | ID=Msa0660050-mRNA-1:three_prime_utr;Parent=Msa0660050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
