Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706110 | XP_003630404.1 | 88.771 | 472 | 6 | 3 | 1 | 472 | 1 | 425 | 0.0 | 830 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706110 | sp|A4YGN0|SUCD_METS5 | 39.709 | 413 | 195 | 6 | 57 | 469 | 1 | 359 | 1.40e-77 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706110 | G7LFT6 | 88.771 | 472 | 6 | 3 | 1 | 472 | 1 | 425 | 0.0 | 830 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011920 | Msa0706110 | -0.801623 | 8.251331e-49 | -8.615850e-47 |
| Msa0030050 | Msa0706110 | 0.801606 | 8.316447e-49 | -8.615850e-47 |
| Msa0053640 | Msa0706110 | 0.824705 | 6.983408e-54 | -8.615850e-47 |
| Msa0660050 | Msa0706110 | 0.987266 | 1.217107e-169 | -8.615850e-47 |
| Msa0706080 | Msa0706110 | 0.943847 | 5.737890e-103 | -8.615850e-47 |
| Msa0706110 | Msa1087890 | 0.814638 | 1.391248e-51 | -8.615850e-47 |
| Msa0706110 | Msa1249600 | 0.817784 | 2.755012e-52 | -8.615850e-47 |
| Msa0706110 | Msa1385970 | 0.804699 | 1.906078e-49 | -8.615850e-47 |
| Msa0706110 | Msa1417110 | 0.808069 | 3.712196e-50 | -8.615850e-47 |
| Msa0148040 | Msa0706110 | 0.808794 | 2.599249e-50 | -8.615850e-47 |
| Msa0233920 | Msa0706110 | 0.811422 | 7.058882e-51 | -8.615850e-47 |
| Msa0312640 | Msa0706110 | 0.820201 | 7.773916e-53 | -8.615850e-47 |
| Msa0341490 | Msa0706110 | -0.803653 | 3.145598e-49 | -8.615850e-47 |
| Msa0569900 | Msa0706110 | 0.837467 | 5.109429e-57 | -8.615850e-47 |
| Msa0577690 | Msa0706110 | 0.826038 | 3.378491e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706110 | MtrunA17_Chr8g0385221 | 88.771 | 472 | 6 | 3 | 1 | 472 | 1 | 425 | 0.0 | 830 |
| Msa0706110 | MtrunA17_Chr7g0262421 | 28.261 | 414 | 233 | 10 | 58 | 462 | 13 | 371 | 2.11e-39 | 146 |
| Msa0706110 | MtrunA17_Chr1g0183131 | 27.737 | 411 | 237 | 10 | 58 | 461 | 11 | 368 | 3.40e-39 | 145 |
| Msa0706110 | MtrunA17_Chr3g0125961 | 28.605 | 423 | 237 | 15 | 58 | 471 | 12 | 378 | 1.07e-38 | 144 |
| Msa0706110 | MtrunA17_Chr3g0125911 | 28.132 | 423 | 239 | 15 | 58 | 471 | 12 | 378 | 1.08e-37 | 141 |
| Msa0706110 | MtrunA17_Chr3g0125941 | 28.029 | 421 | 238 | 15 | 60 | 471 | 15 | 379 | 1.63e-36 | 138 |
| Msa0706110 | MtrunA17_Chr5g0440521 | 28.162 | 419 | 242 | 11 | 58 | 469 | 21 | 387 | 2.17e-33 | 130 |
| Msa0706110 | MtrunA17_Chr4g0021211 | 26.841 | 421 | 243 | 10 | 58 | 471 | 36 | 398 | 1.65e-30 | 122 |
| Msa0706110 | MtrunA17_Chr3g0132351 | 26.573 | 429 | 256 | 11 | 51 | 471 | 12 | 389 | 3.78e-29 | 118 |
| Msa0706110 | MtrunA17_Chr6g0478081 | 26.492 | 419 | 247 | 11 | 58 | 471 | 13 | 375 | 1.25e-28 | 116 |
| Msa0706110 | MtrunA17_Chr5g0419681 | 25.366 | 410 | 246 | 9 | 67 | 471 | 20 | 374 | 1.46e-26 | 110 |
| Msa0706110 | MtrunA17_Chr3g0118441 | 25.714 | 420 | 254 | 11 | 50 | 462 | 8 | 376 | 2.82e-26 | 110 |
| Msa0706110 | MtrunA17_Chr7g0242291 | 27.990 | 418 | 233 | 15 | 58 | 462 | 23 | 385 | 2.68e-25 | 107 |
| Msa0706110 | MtrunA17_Chr3g0118431 | 31.513 | 238 | 153 | 8 | 234 | 463 | 56 | 291 | 1.05e-21 | 95.1 |
| Msa0706110 | MtrunA17_Chr7g0242301 | 25.879 | 398 | 208 | 10 | 71 | 462 | 1 | 317 | 1.36e-18 | 86.7 |
| Msa0706110 | MtrunA17_Chr6g0474141 | 27.706 | 231 | 151 | 7 | 232 | 456 | 127 | 347 | 9.64e-17 | 81.6 |
| Msa0706110 | MtrunA17_Chr8g0367151 | 25.305 | 328 | 163 | 11 | 71 | 390 | 25 | 278 | 1.90e-13 | 71.6 |
| Msa0706110 | MtrunA17_Chr4g0013331 | 28.862 | 246 | 157 | 7 | 232 | 469 | 137 | 372 | 2.26e-12 | 68.6 |
| Msa0706110 | MtrunA17_Chr2g0281281 | 28.796 | 191 | 131 | 5 | 243 | 432 | 92 | 278 | 3.03e-12 | 67.8 |
| Msa0706110 | MtrunA17_Chr2g0281301 | 25.275 | 273 | 170 | 8 | 190 | 432 | 23 | 291 | 1.64e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706110 | AT5G63620.1 | 67.789 | 475 | 100 | 5 | 1 | 472 | 3 | 427 | 0.0 | 639 |
| Msa0706110 | AT5G63620.2 | 67.368 | 475 | 102 | 5 | 1 | 472 | 3 | 427 | 0.0 | 636 |
| Msa0706110 | AT5G63620.3 | 62.994 | 354 | 78 | 4 | 1 | 351 | 3 | 306 | 2.02e-153 | 439 |
| Msa0706110 | AT5G43940.1 | 27.317 | 410 | 240 | 9 | 58 | 461 | 11 | 368 | 9.18e-39 | 145 |
| Msa0706110 | AT5G43940.2 | 27.338 | 417 | 244 | 10 | 60 | 470 | 25 | 388 | 1.64e-38 | 144 |
| Msa0706110 | AT1G77120.1 | 27.660 | 423 | 241 | 13 | 58 | 471 | 11 | 377 | 4.56e-37 | 140 |
| Msa0706110 | AT4G22110.2 | 30.641 | 421 | 229 | 12 | 52 | 462 | 12 | 379 | 1.01e-36 | 139 |
| Msa0706110 | AT4G22110.1 | 30.641 | 421 | 229 | 12 | 52 | 462 | 12 | 379 | 1.01e-36 | 139 |
| Msa0706110 | AT1G64710.1 | 26.034 | 411 | 249 | 8 | 58 | 462 | 11 | 372 | 8.33e-36 | 137 |
| Msa0706110 | AT5G42250.1 | 27.273 | 418 | 247 | 10 | 54 | 464 | 16 | 383 | 4.21e-34 | 132 |
| Msa0706110 | AT1G64710.2 | 25.879 | 398 | 240 | 8 | 71 | 462 | 1 | 349 | 5.40e-34 | 131 |
| Msa0706110 | AT1G32780.1 | 27.725 | 422 | 252 | 12 | 58 | 471 | 12 | 388 | 1.67e-33 | 130 |
| Msa0706110 | AT1G22430.2 | 28.979 | 421 | 236 | 12 | 52 | 462 | 11 | 378 | 2.58e-33 | 130 |
| Msa0706110 | AT1G22430.1 | 28.979 | 421 | 236 | 12 | 52 | 462 | 11 | 378 | 2.58e-33 | 130 |
| Msa0706110 | AT5G24760.1 | 26.969 | 419 | 241 | 12 | 60 | 471 | 19 | 379 | 3.46e-31 | 124 |
| Msa0706110 | AT1G22440.1 | 27.208 | 419 | 244 | 11 | 52 | 461 | 9 | 375 | 3.01e-30 | 121 |
| Msa0706110 | AT5G24760.2 | 26.716 | 408 | 234 | 12 | 71 | 471 | 1 | 350 | 3.65e-29 | 117 |
| Msa0706110 | AT5G24760.3 | 26.716 | 408 | 234 | 12 | 71 | 471 | 1 | 350 | 3.65e-29 | 117 |
| Msa0706110 | AT1G64710.3 | 25.449 | 334 | 201 | 6 | 133 | 462 | 14 | 303 | 2.38e-27 | 112 |
| Msa0706110 | AT4G22110.3 | 30.717 | 293 | 152 | 6 | 52 | 342 | 12 | 255 | 5.60e-24 | 101 |
| Msa0706110 | AT5G24760.4 | 31.557 | 244 | 158 | 6 | 234 | 471 | 25 | 265 | 9.32e-24 | 100 |
| Msa0706110 | AT1G22430.3 | 28.882 | 322 | 174 | 8 | 52 | 368 | 11 | 282 | 1.52e-23 | 101 |
| Msa0706110 | AT1G22430.4 | 28.425 | 292 | 158 | 6 | 52 | 341 | 11 | 253 | 9.93e-22 | 95.5 |
| Msa0706110 | AT1G22430.5 | 28.425 | 292 | 158 | 6 | 52 | 341 | 11 | 253 | 9.93e-22 | 95.5 |
| Msa0706110 | AT5G51970.1 | 26.122 | 245 | 165 | 7 | 232 | 472 | 129 | 361 | 3.92e-14 | 74.3 |
| Msa0706110 | AT5G51970.2 | 26.122 | 245 | 165 | 7 | 232 | 472 | 129 | 361 | 3.92e-14 | 74.3 |
| Msa0706110 | AT4G21580.2 | 27.000 | 200 | 141 | 5 | 239 | 436 | 55 | 251 | 1.34e-12 | 68.6 |
| Msa0706110 | AT5G61510.2 | 31.176 | 170 | 113 | 4 | 242 | 410 | 117 | 283 | 1.93e-12 | 68.9 |
| Msa0706110 | AT4G21580.1 | 27.000 | 200 | 141 | 5 | 239 | 436 | 88 | 284 | 2.55e-12 | 68.2 |
| Msa0706110 | AT5G61510.1 | 30.481 | 187 | 122 | 6 | 228 | 410 | 158 | 340 | 3.82e-12 | 68.6 |
Find 124 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTAACCTTTCTATGGTTT+TGG | 0.175052 | 4_4:+79014324 | None:intergenic |
| AAAATAATTGGCAAATTTAT+AGG | 0.215037 | 4_4:-79013693 | Msa0706110:CDS |
| GGTGATACTGTTGCTGTTAT+TGG | 0.219498 | 4_4:-79013501 | Msa0706110:CDS |
| CTGGCACAAGCTGGTTCTTT+AGG | 0.246946 | 4_4:-79012824 | Msa0706110:CDS |
| AGAGTAGACTCCTTTATAAT+TGG | 0.267174 | 4_4:-79013723 | Msa0706110:CDS |
| ATTGGAATACTGAAAATAAT+TGG | 0.285996 | 4_4:-79013705 | Msa0706110:CDS |
| ACCGATATACATGTATAGTA+TGG | 0.286726 | 4_4:-79013667 | Msa0706110:CDS |
| TGTGAACAGATAAAAGTTAT+TGG | 0.299278 | 4_4:-79012251 | Msa0706110:intron |
| TCGAGTTTCACCATCGTATA+AGG | 0.300970 | 4_4:+79013942 | None:intergenic |
| ACTGTTGCTGTTATTGGAAC+TGG | 0.304388 | 4_4:-79013495 | Msa0706110:CDS |
| TTTCAGTATTCCAATTATAA+AGG | 0.312430 | 4_4:+79013713 | None:intergenic |
| GATGAGAAGTTCACCAGCTT+TGG | 0.318763 | 4_4:+79014689 | None:intergenic |
| TATACCGAGTCTGCAATTCT+AGG | 0.324055 | 4_4:-79013579 | Msa0706110:CDS |
| TCGGTATATGGCATTGAGTT+TGG | 0.337585 | 4_4:+79013594 | None:intergenic |
| CCAATTGGATCTCGAGTTGT+TGG | 0.344296 | 4_4:-79014142 | Msa0706110:CDS |
| TTCAATGGTGAGAGGTTTGT+TGG | 0.348495 | 4_4:+79014731 | None:intergenic |
| AACTTCACGCAGGAAATTAC+TGG | 0.359885 | 4_4:-79012950 | Msa0706110:intron |
| GATGTTGCTGTTGAAGCCTT+AGG | 0.362906 | 4_4:-79012914 | Msa0706110:CDS |
| TTAATTAGATTGGCAGAAAC+AGG | 0.368222 | 4_4:-79012191 | Msa0706110:CDS |
| ATAAAAGTTATTGGCTCATA+TGG | 0.373792 | 4_4:-79012242 | Msa0706110:CDS |
| ATGAGAAGTTCACCAGCTTT+GGG | 0.377738 | 4_4:+79014690 | None:intergenic |
| TATAATTGCTGTTGATGTTC+AGG | 0.379502 | 4_4:-79013203 | Msa0706110:CDS |
| GGAGTCAGGCAAAGCATTCC+AGG | 0.386069 | 4_4:-79012123 | Msa0706110:CDS |
| TCTTGAAAAGGTTGTCTTGT+TGG | 0.386179 | 4_4:-79014881 | Msa0706110:CDS |
| TCTTCCAAAGTTAATTAGAT+TGG | 0.387780 | 4_4:-79012201 | Msa0706110:CDS |
| CTGCAGATAGCTAGAGCATT+TGG | 0.389366 | 4_4:-79013235 | Msa0706110:CDS |
| AGAATTGCAGACTCGGTATA+TGG | 0.391325 | 4_4:+79013582 | None:intergenic |
| GTTGTGGGCCATGAGATTAC+TGG | 0.411881 | 4_4:-79014379 | Msa0706110:CDS |
| GATTGTTTCAGGCTTCCAAT+TGG | 0.413947 | 4_4:-79014157 | Msa0706110:intron |
| CTGTTGCTGTTATTGGAACT+GGG | 0.417859 | 4_4:-79013494 | Msa0706110:CDS |
| CCCATACTATACATGTATAT+CGG | 0.418017 | 4_4:+79013666 | None:intergenic |
| ATAGTATAGCTCTACATTCC+AGG | 0.421704 | 4_4:-79012059 | Msa0706110:exon |
| TGAATCAAGTAAGAAGTAAG+AGG | 0.421869 | 4_4:+79013894 | None:intergenic |
| TTGTTTCATTTCAGTTTCAT+TGG | 0.430102 | 4_4:-79014982 | Msa0706110:five_prime_UTR |
| TCTGCCAATCTAATTAACTT+TGG | 0.433236 | 4_4:+79012197 | None:intergenic |
| TCATAAAATAACTGATTGTA+AGG | 0.434577 | 4_4:-79011924 | Msa0706110:three_prime_UTR |
| GCTCATATGGAGGGAGGGCT+AGG | 0.438318 | 4_4:-79012229 | Msa0706110:CDS |
| CGCTGCACAAAAGCATTGCC+TGG | 0.444811 | 4_4:+79012041 | None:intergenic |
| GGAGGAAAAGCAGTGATGAT+TGG | 0.449002 | 4_4:-79012848 | Msa0706110:CDS |
| TGCAACTCACACAATAAATT+CGG | 0.452277 | 4_4:-79013149 | Msa0706110:CDS |
| TTTGCTTATAACCGCGCAAA+AGG | 0.453633 | 4_4:-79013967 | Msa0706110:CDS |
| ACCAACAGCTTCTGTGTGAA+TGG | 0.454170 | 4_4:+79014800 | None:intergenic |
| ACAGAAGCTGTTGGTGGTGT+TGG | 0.457231 | 4_4:-79014792 | Msa0706110:CDS |
| CGACTGTTTCTTCGAGGAAG+TGG | 0.460944 | 4_4:-79013922 | Msa0706110:CDS |
| GAAACAGGTATCTTCGACCT+TGG | 0.461531 | 4_4:-79012176 | Msa0706110:CDS |
| TCAGCAACAACTTCTTGAAA+AGG | 0.464826 | 4_4:-79014893 | Msa0706110:CDS |
| TCAATGGTGAGAGGTTTGTT+GGG | 0.468644 | 4_4:+79014732 | None:intergenic |
| AGCTAGAGCATTTGGTGCCT+CGG | 0.473664 | 4_4:-79013227 | Msa0706110:CDS |
| CCAACAACTCGAGATCCAAT+TGG | 0.477791 | 4_4:+79014142 | None:intergenic |
| TTTCAGTTTCATTGGAAGAT+CGG | 0.481224 | 4_4:-79014974 | Msa0706110:five_prime_UTR |
| CATATTCCTCGTCCCAAAGC+TGG | 0.483522 | 4_4:-79014702 | Msa0706110:CDS |
| AATACCGCCAATGCATTTGC+TGG | 0.484950 | 4_4:+79013618 | None:intergenic |
| AGTTCACCAGCTTTGGGACG+AGG | 0.494387 | 4_4:+79014696 | None:intergenic |
| TACAATCATTTCACATGTAT+CGG | 0.496233 | 4_4:+79013864 | None:intergenic |
| CATGCAGCCGAAGTGCGCCC+TGG | 0.499244 | 4_4:-79013522 | Msa0706110:CDS |
| ATGTTGCTGTTGAAGCCTTA+GGG | 0.501604 | 4_4:-79012913 | Msa0706110:CDS |
| AGCTGGTTCTTTAGGAGAGG+TGG | 0.503154 | 4_4:-79012816 | Msa0706110:CDS |
| AGACACCTATATGTGTTCTC+AGG | 0.510626 | 4_4:+79011974 | None:intergenic |
| CAATGTTACCTTTGAACAGT+AGG | 0.517503 | 4_4:+79014090 | None:intergenic |
| GTCTAAGTGAGATTGAGAAA+TGG | 0.520409 | 4_4:-79014943 | Msa0706110:exon |
| AGGAATATGAAATTCTTCAA+TGG | 0.521033 | 4_4:+79014716 | None:intergenic |
| TTCTTGTAACAGCATGGCCA+AGG | 0.522537 | 4_4:+79012159 | None:intergenic |
| AAATAGACTTGTTCGCAGAA+AGG | 0.523418 | 4_4:-79012789 | Msa0706110:intron |
| GAAACTCGACTGTTTCTTCG+AGG | 0.525121 | 4_4:-79013928 | Msa0706110:CDS |
| CAGGAAATTACTGGTGGAAA+GGG | 0.526933 | 4_4:-79012941 | Msa0706110:CDS |
| ACAACACAAGGACTTGAAAA+CGG | 0.537012 | 4_4:+79014397 | None:intergenic |
| CGGCCATATGTCTCACACAT+TGG | 0.547239 | 4_4:-79012017 | Msa0706110:three_prime_UTR |
| GCAGGAAATTACTGGTGGAA+AGG | 0.554988 | 4_4:-79012942 | Msa0706110:intron |
| CCGATATACATGTATAGTAT+GGG | 0.556704 | 4_4:-79013666 | Msa0706110:CDS |
| AGTGGTGAAAGACTCGTCAT+TGG | 0.558258 | 4_4:-79011846 | Msa0706110:three_prime_UTR |
| ACAGCACCACGCATGTAAGA+TGG | 0.560649 | 4_4:+79014765 | None:intergenic |
| GCAAAAGGAACCTTATACGA+TGG | 0.560670 | 4_4:-79013952 | Msa0706110:CDS |
| CTGATTCCAAAACCATAGAA+AGG | 0.561548 | 4_4:-79014330 | Msa0706110:intron |
| CTAGAGAAAGCAAAGACACT+TGG | 0.562324 | 4_4:-79013172 | Msa0706110:CDS |
| ATCTCATGGCCCACAACACA+AGG | 0.562994 | 4_4:+79014385 | None:intergenic |
| TCTGATCTTCATGTCATGAA+AGG | 0.564745 | 4_4:-79014427 | Msa0706110:CDS |
| AAATGTCTGTGGTCTCCCTA+AGG | 0.567546 | 4_4:+79012898 | None:intergenic |
| TGCACACAAAGTGTGAAAGA+TGG | 0.567900 | 4_4:-79012869 | Msa0706110:CDS |
| ACTCCAATGTGTGAGACATA+TGG | 0.568581 | 4_4:+79012014 | None:intergenic |
| TCCATTCACACAGAAGCTGT+TGG | 0.570592 | 4_4:-79014801 | Msa0706110:CDS |
| AAAGTTATTGGCTCATATGG+AGG | 0.577253 | 4_4:-79012239 | Msa0706110:CDS |
| TTTGCATCTTGCTCATGTAG+TGG | 0.582769 | 4_4:-79011864 | Msa0706110:three_prime_UTR |
| TGAAATTCTTCAATGGTGAG+AGG | 0.583588 | 4_4:+79014723 | None:intergenic |
| TGTTGAAGCTGATGCATGTA+CGG | 0.583923 | 4_4:-79014826 | Msa0706110:CDS |
| TCACACAATAAATTCGGCTA+AGG | 0.585756 | 4_4:-79013143 | Msa0706110:CDS |
| ATTCACACAGAAGCTGTTGG+TGG | 0.585825 | 4_4:-79014798 | Msa0706110:CDS |
| CTCACACATTGGAGTTGCAA+AGG | 0.592098 | 4_4:-79012006 | Msa0706110:three_prime_UTR |
| AGTATCACCAGGGCGCACTT+CGG | 0.593810 | 4_4:+79013515 | None:intergenic |
| CAACTTCACCAGTAATCTCA+TGG | 0.594487 | 4_4:+79014371 | None:intergenic |
| ACAAGCTGGTTCTTTAGGAG+AGG | 0.597825 | 4_4:-79012819 | Msa0706110:CDS |
| TGTTGCTGTTATTGGAACTG+GGG | 0.602671 | 4_4:-79013493 | Msa0706110:CDS |
| CAACTGTTCCTACTGTTCAA+AGG | 0.602922 | 4_4:-79014098 | Msa0706110:intron |
| TGAAATGAAACAAAACAAAG+TGG | 0.605297 | 4_4:+79014992 | None:intergenic |
| ACATCCTAGAATTGCAGACT+CGG | 0.607209 | 4_4:+79013575 | None:intergenic |
| AAGTTATTGGCTCATATGGA+GGG | 0.607746 | 4_4:-79012238 | Msa0706110:CDS |
| GGAGCCTTCATTATGCCTTG+CGG | 0.609397 | 4_4:-79014121 | Msa0706110:CDS |
| TGGCATCTGCACTAGTTCGT+AGG | 0.610288 | 4_4:-79014923 | Msa0706110:CDS |
| TGTGCCAGCAAATGCATTGG+CGG | 0.610816 | 4_4:-79013622 | Msa0706110:CDS |
| CATTGGAGTTGCAAAGGTGT+TGG | 0.610873 | 4_4:-79012000 | Msa0706110:three_prime_UTR |
| ATGATTGGACTGGCACAAGC+TGG | 0.611907 | 4_4:-79012833 | Msa0706110:CDS |
| GTTGCTGTTATTGGAACTGG+GGG | 0.615280 | 4_4:-79013492 | Msa0706110:CDS |
| ATATACATGTATAGTATGGG+AGG | 0.616452 | 4_4:-79013663 | Msa0706110:CDS |
| ATAACAGCAACAGTATCACC+AGG | 0.620053 | 4_4:+79013504 | None:intergenic |
| AAGCTTCGCACAGATCATCA+TGG | 0.622065 | 4_4:+79013992 | None:intergenic |
| GTTGCCGCAAGGCATAATGA+AGG | 0.623436 | 4_4:+79014117 | None:intergenic |
| AAAAGCAGTGATGATTGGAC+TGG | 0.624735 | 4_4:-79012843 | Msa0706110:CDS |
| GTGCACTGAGCAAATGTCTG+TGG | 0.625723 | 4_4:+79012887 | None:intergenic |
| CAGTAGGAACAGTTGCCGCA+AGG | 0.626718 | 4_4:+79014106 | None:intergenic |
| GAATCAAGTAAGAAGTAAGA+GGG | 0.626857 | 4_4:+79013895 | None:intergenic |
| ACTGGTGAAGTTGTTGAACA+TGG | 0.627651 | 4_4:-79014361 | Msa0706110:CDS |
| GAACTTCTCATCAAAACCAA+GGG | 0.629940 | 4_4:-79014678 | Msa0706110:intron |
| TTCACGCAGGAAATTACTGG+TGG | 0.641213 | 4_4:-79012947 | Msa0706110:intron |
| TATACATGTATAGTATGGGA+GGG | 0.642941 | 4_4:-79013662 | Msa0706110:CDS |
| TGAACTTCTCATCAAAACCA+AGG | 0.647879 | 4_4:-79014679 | Msa0706110:CDS |
| TATTGGCTCATATGGAGGGA+GGG | 0.648186 | 4_4:-79012234 | Msa0706110:CDS |
| TTATTGGCTCATATGGAGGG+AGG | 0.648294 | 4_4:-79012235 | Msa0706110:CDS |
| ATCAACAGCAATTATATCCG+AGG | 0.648309 | 4_4:+79013210 | None:intergenic |
| TGTTGTGCCAGCAAATGCAT+TGG | 0.658264 | 4_4:-79013625 | Msa0706110:CDS |
| GGATTGCCATCTTACATGCG+TGG | 0.668555 | 4_4:-79014771 | Msa0706110:CDS |
| GGTGTCCTGAGAACACATAT+AGG | 0.669550 | 4_4:-79011979 | Msa0706110:three_prime_UTR |
| GCATTCCAGGATCTCAACGA+AGG | 0.671434 | 4_4:-79012110 | Msa0706110:CDS |
| ACACAAAGTGTGAAAGATGG+AGG | 0.689218 | 4_4:-79012866 | Msa0706110:CDS |
| TCATGACATGAAGATCAGAG+TGG | 0.751085 | 4_4:+79014431 | None:intergenic |
| TAACAGCAACAGTATCACCA+GGG | 0.751466 | 4_4:+79013505 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTGATATTGTTATGAT+TGG | - | chr4_4:79012273-79012292 | Msa0706110:intron | 15.0% |
| !! | AAAATAATTGGCAAATTTAT+AGG | - | chr4_4:79013096-79013115 | Msa0706110:intron | 15.0% |
| !! | TAGAGAAAACAATTAAATAA+AGG | + | chr4_4:79013820-79013839 | None:intergenic | 15.0% |
| !! | AAAAAACTTTAACCTTTCTA+TGG | + | chr4_4:79012474-79012493 | None:intergenic | 20.0% |
| !! | TAAATTAAGCTTGTCTATAT+GGG | + | chr4_4:79012964-79012983 | None:intergenic | 20.0% |
| !! | ATAAATTAAGCTTGTCTATA+TGG | + | chr4_4:79012965-79012984 | None:intergenic | 20.0% |
| !! | TTTCAGTATTCCAATTATAA+AGG | + | chr4_4:79013079-79013098 | None:intergenic | 20.0% |
| !! | ATTGGAATACTGAAAATAAT+TGG | - | chr4_4:79013084-79013103 | Msa0706110:intron | 20.0% |
| !!! | TATACAAGTATCTTTTCAAT+GGG | + | chr4_4:79013677-79013696 | None:intergenic | 20.0% |
| !!! | ATATACAAGTATCTTTTCAA+TGG | + | chr4_4:79013678-79013697 | None:intergenic | 20.0% |
| !! | GATTAAATTGTTCATATCAA+GGG | - | chr4_4:79014310-79014329 | Msa0706110:intron | 20.0% |
| !!! | ACATACAAATTTAATTTGCT+TGG | + | chr4_4:79014521-79014540 | None:intergenic | 20.0% |
| !!! | TTACAATCAGTTATTTTATG+AGG | + | chr4_4:79014866-79014885 | None:intergenic | 20.0% |
| !! | TCATAAAATAACTGATTGTA+AGG | - | chr4_4:79014865-79014884 | Msa0706110:CDS | 20.0% |
| ! | TGAAATGAAACAAAACAAAG+TGG | + | chr4_4:79011800-79011819 | None:intergenic | 25.0% |
| ! | TTGTTTCATTTCAGTTTCAT+TGG | - | chr4_4:79011807-79011826 | Msa0706110:three_prime_UTR | 25.0% |
| ! | AGGAATATGAAATTCTTCAA+TGG | + | chr4_4:79012076-79012095 | None:intergenic | 25.0% |
| ! | TTTGATATTGTTATGATTGG+TGG | - | chr4_4:79012276-79012295 | Msa0706110:intron | 25.0% |
| !! | TTATGATTGGTGGTTATTAT+TGG | - | chr4_4:79012286-79012305 | Msa0706110:intron | 25.0% |
| ! | TACAATCATTTCACATGTAT+CGG | + | chr4_4:79012928-79012947 | None:intergenic | 25.0% |
| ! | TAACTAAATCAATTGTCAAG+TGG | - | chr4_4:79013333-79013352 | Msa0706110:intron | 25.0% |
| ! | GAAACAGCAAAAATAGAAAA+AGG | + | chr4_4:79013398-79013417 | None:intergenic | 25.0% |
| ! | AAATGATTCAAGATAACCTT+TGG | - | chr4_4:79014287-79014306 | Msa0706110:intron | 25.0% |
| ! | AATGATTCAAGATAACCTTT+GGG | - | chr4_4:79014288-79014307 | Msa0706110:intron | 25.0% |
| ! | TATGAACAATTTAATCCCAA+AGG | + | chr4_4:79014306-79014325 | None:intergenic | 25.0% |
| ! | GGATTAAATTGTTCATATCA+AGG | - | chr4_4:79014309-79014328 | Msa0706110:intron | 25.0% |
| ! | ATGAATTTGTCAAATAAGTG+AGG | + | chr4_4:79014498-79014517 | None:intergenic | 25.0% |
| ! | TGTGAACAGATAAAAGTTAT+TGG | - | chr4_4:79014538-79014557 | Msa0706110:intron | 25.0% |
| !!! | ATAAAAGTTATTGGCTCATA+TGG | - | chr4_4:79014547-79014566 | Msa0706110:intron | 25.0% |
| ! | TCTTCCAAAGTTAATTAGAT+TGG | - | chr4_4:79014588-79014607 | Msa0706110:intron | 25.0% |
| !! | TACAAGAAAATACACTTTTG+AGG | - | chr4_4:79014645-79014664 | Msa0706110:intron | 25.0% |
| TTTCAGTTTCATTGGAAGAT+CGG | - | chr4_4:79011815-79011834 | Msa0706110:three_prime_UTR | 30.0% | |
| ! | AGCTGCAATATACAAGTTTT+AGG | + | chr4_4:79012219-79012238 | None:intergenic | 30.0% |
| TGTATATTGCAGCTTAATTG+TGG | - | chr4_4:79012225-79012244 | Msa0706110:CDS | 30.0% | |
| !!! | AGATGTGATTTTTTGAATGC+AGG | - | chr4_4:79012323-79012342 | Msa0706110:intron | 30.0% |
| ! | CTTTAACCTTTCTATGGTTT+TGG | + | chr4_4:79012468-79012487 | None:intergenic | 30.0% |
| AGCATTATCACACAAAAATG+TGG | + | chr4_4:79012531-79012550 | None:intergenic | 30.0% | |
| AGCAAAAAGGAATAACAAGT+AGG | - | chr4_4:79012600-79012619 | Msa0706110:intron | 30.0% | |
| TCCATTTGTCAACTGAATTA+TGG | - | chr4_4:79012737-79012756 | Msa0706110:intron | 30.0% | |
| ACCATAATTCAGTTGACAAA+TGG | + | chr4_4:79012741-79012760 | None:intergenic | 30.0% | |
| GAATCAAGTAAGAAGTAAGA+GGG | + | chr4_4:79012897-79012916 | None:intergenic | 30.0% | |
| TGAATCAAGTAAGAAGTAAG+AGG | + | chr4_4:79012898-79012917 | None:intergenic | 30.0% | |
| GACTATGTAAACACATACTT+AGG | + | chr4_4:79012989-79013008 | None:intergenic | 30.0% | |
| AGAGTAGACTCCTTTATAAT+TGG | - | chr4_4:79013066-79013085 | Msa0706110:intron | 30.0% | |
| ACCGATATACATGTATAGTA+TGG | - | chr4_4:79013122-79013141 | Msa0706110:CDS | 30.0% | |
| CCCATACTATACATGTATAT+CGG | + | chr4_4:79013126-79013145 | None:intergenic | 30.0% | |
| CCGATATACATGTATAGTAT+GGG | - | chr4_4:79013123-79013142 | Msa0706110:CDS | 30.0% | |
| ATATACATGTATAGTATGGG+AGG | - | chr4_4:79013126-79013145 | Msa0706110:CDS | 30.0% | |
| TATACATGTATAGTATGGGA+GGG | - | chr4_4:79013127-79013146 | Msa0706110:CDS | 30.0% | |
| GCAAAAATAGAAAAAGGAAG+TGG | + | chr4_4:79013392-79013411 | None:intergenic | 30.0% | |
| TTCGATAATGCTTGCTTAAA+TGG | - | chr4_4:79013415-79013434 | Msa0706110:intron | 30.0% | |
| AAGCGGTGATAAAGTTAAAA+TGG | + | chr4_4:79013526-79013545 | None:intergenic | 30.0% | |
| ! | TATAATTGCTGTTGATGTTC+AGG | - | chr4_4:79013586-79013605 | Msa0706110:CDS | 30.0% |
| TGCAACTCACACAATAAATT+CGG | - | chr4_4:79013640-79013659 | Msa0706110:CDS | 30.0% | |
| !!! | ACCACTAGTTTTATTCATGT+TGG | - | chr4_4:79014086-79014105 | Msa0706110:intron | 30.0% |
| TCCAACATGAATAAAACTAG+TGG | + | chr4_4:79014090-79014109 | None:intergenic | 30.0% | |
| ! | TAAGAATTAGGTTGTACAAG+TGG | - | chr4_4:79014238-79014257 | Msa0706110:intron | 30.0% |
| TTGTTCAACAGTTCAAGTAA+AGG | + | chr4_4:79014269-79014288 | None:intergenic | 30.0% | |
| CACTCAATTGAGTTTAAAAG+CGG | + | chr4_4:79014336-79014355 | None:intergenic | 30.0% | |
| TCTGCCAATCTAATTAACTT+TGG | + | chr4_4:79014595-79014614 | None:intergenic | 30.0% | |
| TTAATTAGATTGGCAGAAAC+AGG | - | chr4_4:79014598-79014617 | Msa0706110:intron | 30.0% | |
| ! | TGTATTTTCTTGTAACAGCA+TGG | + | chr4_4:79014639-79014658 | None:intergenic | 30.0% |
| GTCTAAGTGAGATTGAGAAA+TGG | - | chr4_4:79011846-79011865 | Msa0706110:three_prime_UTR | 35.0% | |
| TCAGCAACAACTTCTTGAAA+AGG | - | chr4_4:79011896-79011915 | Msa0706110:three_prime_UTR | 35.0% | |
| TCTTGAAAAGGTTGTCTTGT+TGG | - | chr4_4:79011908-79011927 | Msa0706110:three_prime_UTR | 35.0% | |
| TGAAATTCTTCAATGGTGAG+AGG | + | chr4_4:79012069-79012088 | None:intergenic | 35.0% | |
| TGAACTTCTCATCAAAACCA+AGG | - | chr4_4:79012110-79012129 | Msa0706110:CDS | 35.0% | |
| GAACTTCTCATCAAAACCAA+GGG | - | chr4_4:79012111-79012130 | Msa0706110:CDS | 35.0% | |
| AGAGAGATAAACAATACCCT+TGG | + | chr4_4:79012130-79012149 | None:intergenic | 35.0% | |
| !!! | GATTTTTTGAATGCAGGATG+TGG | - | chr4_4:79012329-79012348 | Msa0706110:intron | 35.0% |
| TCTGATCTTCATGTCATGAA+AGG | - | chr4_4:79012362-79012381 | Msa0706110:intron | 35.0% | |
| ACAACACAAGGACTTGAAAA+CGG | + | chr4_4:79012395-79012414 | None:intergenic | 35.0% | |
| !!! | TTTTCAAGTCCTTGTGTTGT+GGG | - | chr4_4:79012395-79012414 | Msa0706110:intron | 35.0% |
| CTGATTCCAAAACCATAGAA+AGG | - | chr4_4:79012459-79012478 | Msa0706110:intron | 35.0% | |
| ! | GTTCTTGATGACTAGCAAAA+AGG | - | chr4_4:79012587-79012606 | Msa0706110:intron | 35.0% |
| GGATTGTTCTTGATTGTTTC+AGG | - | chr4_4:79012621-79012640 | Msa0706110:intron | 35.0% | |
| CAATGTTACCTTTGAACAGT+AGG | + | chr4_4:79012702-79012721 | None:intergenic | 35.0% | |
| TGTCAACTGAATTATGGTCT+CGG | - | chr4_4:79012743-79012762 | Msa0706110:intron | 35.0% | |
| GTGTTTATGCTGTCTACAAA+CGG | - | chr4_4:79012765-79012784 | Msa0706110:intron | 35.0% | |
| ! | AGTCATAGTTTTCTCTGCTA+TGG | - | chr4_4:79013005-79013024 | Msa0706110:intron | 35.0% |
| !!! | TGTGCTGTTTTTACTGCTTA+TGG | - | chr4_4:79013234-79013253 | Msa0706110:CDS | 35.0% |
| ! | TTTTACTGCTTATGGTGCAA+TGG | - | chr4_4:79013242-79013261 | Msa0706110:CDS | 35.0% |
| ! | TTTTCATATATCCGAGCAGT+AGG | - | chr4_4:79013478-79013497 | Msa0706110:intron | 35.0% |
| ATCAACAGCAATTATATCCG+AGG | + | chr4_4:79013582-79013601 | None:intergenic | 35.0% | |
| TCACACAATAAATTCGGCTA+AGG | - | chr4_4:79013646-79013665 | Msa0706110:CDS | 35.0% | |
| GTTCTGGCAATTAAACAATG+AGG | + | chr4_4:79013715-79013734 | None:intergenic | 35.0% | |
| ! | AAATAGACTTGTTCGCAGAA+AGG | - | chr4_4:79014000-79014019 | Msa0706110:intron | 35.0% |
| ! | TATTCCCATACCCCTAATTT+TGG | + | chr4_4:79014220-79014239 | None:intergenic | 35.0% |
| !! | AAAGTTATTGGCTCATATGG+AGG | - | chr4_4:79014550-79014569 | Msa0706110:intron | 35.0% |
| !! | AAGTTATTGGCTCATATGGA+GGG | - | chr4_4:79014551-79014570 | Msa0706110:intron | 35.0% |
| !! | AAATACACTTTTGAGGAGTC+AGG | - | chr4_4:79014652-79014671 | Msa0706110:intron | 35.0% |
| CTCAACGAAGGAAAAATAGT+CGG | - | chr4_4:79014691-79014710 | Msa0706110:CDS | 35.0% | |
| ! | ATAGTATAGCTCTACATTCC+AGG | - | chr4_4:79014730-79014749 | Msa0706110:CDS | 35.0% |
| TGTTGAAGCTGATGCATGTA+CGG | - | chr4_4:79011963-79011982 | Msa0706110:three_prime_UTR | 40.0% | |
| ! | TCAATGGTGAGAGGTTTGTT+GGG | + | chr4_4:79012060-79012079 | None:intergenic | 40.0% |
| TTCAATGGTGAGAGGTTTGT+TGG | + | chr4_4:79012061-79012080 | None:intergenic | 40.0% | |
| ATGAGAAGTTCACCAGCTTT+GGG | + | chr4_4:79012102-79012121 | None:intergenic | 40.0% | |
| TTGCAGCTTAATTGTGGTTG+TGG | - | chr4_4:79012231-79012250 | Msa0706110:CDS | 40.0% | |
| TCATGACATGAAGATCAGAG+TGG | + | chr4_4:79012361-79012380 | None:intergenic | 40.0% | |
| !!! | GTTTTCAAGTCCTTGTGTTG+TGG | - | chr4_4:79012394-79012413 | Msa0706110:intron | 40.0% |
| CAACTTCACCAGTAATCTCA+TGG | + | chr4_4:79012421-79012440 | None:intergenic | 40.0% | |
| ACTGGTGAAGTTGTTGAACA+TGG | - | chr4_4:79012428-79012447 | Msa0706110:intron | 40.0% | |
| GATTGTTTCAGGCTTCCAAT+TGG | - | chr4_4:79012632-79012651 | Msa0706110:intron | 40.0% | |
| CAACTGTTCCTACTGTTCAA+AGG | - | chr4_4:79012691-79012710 | Msa0706110:intron | 40.0% | |
| TTTGCTTATAACCGCGCAAA+AGG | - | chr4_4:79012822-79012841 | Msa0706110:CDS | 40.0% | |
| GCAAAAGGAACCTTATACGA+TGG | - | chr4_4:79012837-79012856 | Msa0706110:CDS | 40.0% | |
| TCGAGTTTCACCATCGTATA+AGG | + | chr4_4:79012850-79012869 | None:intergenic | 40.0% | |
| ! | TCGGTATATGGCATTGAGTT+TGG | + | chr4_4:79013198-79013217 | None:intergenic | 40.0% |
| ! | AGAATTGCAGACTCGGTATA+TGG | + | chr4_4:79013210-79013229 | None:intergenic | 40.0% |
| TATACCGAGTCTGCAATTCT+AGG | - | chr4_4:79013210-79013229 | Msa0706110:CDS | 40.0% | |
| ACATCCTAGAATTGCAGACT+CGG | + | chr4_4:79013217-79013236 | None:intergenic | 40.0% | |
| TAACAGCAACAGTATCACCA+GGG | + | chr4_4:79013287-79013306 | None:intergenic | 40.0% | |
| ATAACAGCAACAGTATCACC+AGG | + | chr4_4:79013288-79013307 | None:intergenic | 40.0% | |
| ! | GGTGATACTGTTGCTGTTAT+TGG | - | chr4_4:79013288-79013307 | Msa0706110:intron | 40.0% |
| ! | ACTGTTGCTGTTATTGGAAC+TGG | - | chr4_4:79013294-79013313 | Msa0706110:intron | 40.0% |
| ! | CTGTTGCTGTTATTGGAACT+GGG | - | chr4_4:79013295-79013314 | Msa0706110:intron | 40.0% |
| ! | TGTTGCTGTTATTGGAACTG+GGG | - | chr4_4:79013296-79013315 | Msa0706110:intron | 40.0% |
| CTAGAGAAAGCAAAGACACT+TGG | - | chr4_4:79013617-79013636 | Msa0706110:CDS | 40.0% | |
| TGTTAGGAGCTAATAGACAG+AGG | + | chr4_4:79013752-79013771 | None:intergenic | 40.0% | |
| TTATGCACGATAGTGTGAGT+GGG | + | chr4_4:79013778-79013797 | None:intergenic | 40.0% | |
| TTTATGCACGATAGTGTGAG+TGG | + | chr4_4:79013779-79013798 | None:intergenic | 40.0% | |
| ! | TGTTTTCTCTAACTTCACGC+AGG | - | chr4_4:79013829-79013848 | Msa0706110:intron | 40.0% |
| AACTTCACGCAGGAAATTAC+TGG | - | chr4_4:79013839-79013858 | Msa0706110:intron | 40.0% | |
| CAGGAAATTACTGGTGGAAA+GGG | - | chr4_4:79013848-79013867 | Msa0706110:intron | 40.0% | |
| ! | ATGTTGCTGTTGAAGCCTTA+GGG | - | chr4_4:79013876-79013895 | Msa0706110:CDS | 40.0% |
| TGCACACAAAGTGTGAAAGA+TGG | - | chr4_4:79013920-79013939 | Msa0706110:CDS | 40.0% | |
| ACACAAAGTGTGAAAGATGG+AGG | - | chr4_4:79013923-79013942 | Msa0706110:CDS | 40.0% | |
| AAAAGCAGTGATGATTGGAC+TGG | - | chr4_4:79013946-79013965 | Msa0706110:CDS | 40.0% | |
| TCAAGCCAAAATTAGGGGTA+TGG | - | chr4_4:79014212-79014231 | Msa0706110:intron | 40.0% | |
| ! | CAAGCCAAAATTAGGGGTAT+GGG | - | chr4_4:79014213-79014232 | Msa0706110:intron | 40.0% |
| GGGGTATGGGAATAAGAATT+AGG | - | chr4_4:79014226-79014245 | Msa0706110:intron | 40.0% | |
| ACTTCACGTCAATTCTGCTT+TGG | + | chr4_4:79014421-79014440 | None:intergenic | 40.0% | |
| ! | TAAGTGAGGTGCTACACTAA+AGG | + | chr4_4:79014484-79014503 | None:intergenic | 40.0% |
| ! | TTTTTCCTTCGTTGAGATCC+TGG | + | chr4_4:79014687-79014706 | None:intergenic | 40.0% |
| ACGAAGGAAAAATAGTCGGT+CGG | - | chr4_4:79014695-79014714 | Msa0706110:CDS | 40.0% | |
| ACTCCAATGTGTGAGACATA+TGG | + | chr4_4:79014778-79014797 | None:intergenic | 40.0% | |
| AGACACCTATATGTGTTCTC+AGG | + | chr4_4:79014818-79014837 | None:intergenic | 40.0% | |
| TTTGCATCTTGCTCATGTAG+TGG | - | chr4_4:79014925-79014944 | Msa0706110:CDS | 40.0% | |
| TCCATTCACACAGAAGCTGT+TGG | - | chr4_4:79011988-79012007 | Msa0706110:three_prime_UTR | 45.0% | |
| ACCAACAGCTTCTGTGTGAA+TGG | + | chr4_4:79011992-79012011 | None:intergenic | 45.0% | |
| ATTCACACAGAAGCTGTTGG+TGG | - | chr4_4:79011991-79012010 | Msa0706110:three_prime_UTR | 45.0% | |
| !!! | ACATGCGTGGTGCTGTTTTT+CGG | - | chr4_4:79012031-79012050 | Msa0706110:three_prime_UTR | 45.0% |
| GATGAGAAGTTCACCAGCTT+TGG | + | chr4_4:79012103-79012122 | None:intergenic | 45.0% | |
| CCAACAACTCGAGATCCAAT+TGG | + | chr4_4:79012650-79012669 | None:intergenic | 45.0% | |
| ! | CCAATTGGATCTCGAGTTGT+TGG | - | chr4_4:79012647-79012666 | Msa0706110:intron | 45.0% |
| CTGTCTACAAACGGTATGCA+GGG | - | chr4_4:79012774-79012793 | Msa0706110:intron | 45.0% | |
| AAGCTTCGCACAGATCATCA+TGG | + | chr4_4:79012800-79012819 | None:intergenic | 45.0% | |
| ! | CGTATAAGGTTCCTTTTGCG+CGG | + | chr4_4:79012836-79012855 | None:intergenic | 45.0% |
| ! | GAAACTCGACTGTTTCTTCG+AGG | - | chr4_4:79012861-79012880 | Msa0706110:CDS | 45.0% |
| TGTTGTGCCAGCAAATGCAT+TGG | - | chr4_4:79013164-79013183 | Msa0706110:CDS | 45.0% | |
| AATACCGCCAATGCATTTGC+TGG | + | chr4_4:79013174-79013193 | None:intergenic | 45.0% | |
| ! | GTTGCTGTTATTGGAACTGG+GGG | - | chr4_4:79013297-79013316 | Msa0706110:intron | 45.0% |
| TATCTGCAGACAACTGGAAG+CGG | + | chr4_4:79013543-79013562 | None:intergenic | 45.0% | |
| TCTAGCTATCTGCAGACAAC+TGG | + | chr4_4:79013549-79013568 | None:intergenic | 45.0% | |
| ! | CTGCAGATAGCTAGAGCATT+TGG | - | chr4_4:79013554-79013573 | Msa0706110:CDS | 45.0% |
| TGCCAGAACTCTATCTTGTG+CGG | - | chr4_4:79013726-79013745 | Msa0706110:CDS | 45.0% | |
| TAGTGTGAGTGGGTGATGTT+AGG | + | chr4_4:79013768-79013787 | None:intergenic | 45.0% | |
| TTCACGCAGGAAATTACTGG+TGG | - | chr4_4:79013842-79013861 | Msa0706110:intron | 45.0% | |
| GCAGGAAATTACTGGTGGAA+AGG | - | chr4_4:79013847-79013866 | Msa0706110:intron | 45.0% | |
| ! | GATGTTGCTGTTGAAGCCTT+AGG | - | chr4_4:79013875-79013894 | Msa0706110:CDS | 45.0% |
| AAATGTCTGTGGTCTCCCTA+AGG | + | chr4_4:79013894-79013913 | None:intergenic | 45.0% | |
| GGAGGAAAAGCAGTGATGAT+TGG | - | chr4_4:79013941-79013960 | Msa0706110:CDS | 45.0% | |
| ! | ACAAGCTGGTTCTTTAGGAG+AGG | - | chr4_4:79013970-79013989 | Msa0706110:CDS | 45.0% |
| !!! | CCCTAATTTTGGCTTGAGCA+GGG | + | chr4_4:79014209-79014228 | None:intergenic | 45.0% |
| CCCTGCTCAAGCCAAAATTA+GGG | - | chr4_4:79014206-79014225 | Msa0706110:intron | 45.0% | |
| CCTGCTCAAGCCAAAATTAG+GGG | - | chr4_4:79014207-79014226 | Msa0706110:intron | 45.0% | |
| !! | TTATTGGCTCATATGGAGGG+AGG | - | chr4_4:79014554-79014573 | Msa0706110:intron | 45.0% |
| !! | TATTGGCTCATATGGAGGGA+GGG | - | chr4_4:79014555-79014574 | Msa0706110:intron | 45.0% |
| GAAACAGGTATCTTCGACCT+TGG | - | chr4_4:79014613-79014632 | Msa0706110:intron | 45.0% | |
| TTCTTGTAACAGCATGGCCA+AGG | + | chr4_4:79014633-79014652 | None:intergenic | 45.0% | |
| CGAAGGAAAAATAGTCGGTC+GGG | - | chr4_4:79014696-79014715 | Msa0706110:CDS | 45.0% | |
| CTCACACATTGGAGTTGCAA+AGG | - | chr4_4:79014783-79014802 | Msa0706110:CDS | 45.0% | |
| ! | CATTGGAGTTGCAAAGGTGT+TGG | - | chr4_4:79014789-79014808 | Msa0706110:CDS | 45.0% |
| GGTGTCCTGAGAACACATAT+AGG | - | chr4_4:79014810-79014829 | Msa0706110:CDS | 45.0% | |
| AGTGGTGAAAGACTCGTCAT+TGG | - | chr4_4:79014943-79014962 | Msa0706110:exon | 45.0% | |
| TGGCATCTGCACTAGTTCGT+AGG | - | chr4_4:79011866-79011885 | Msa0706110:three_prime_UTR | 50.0% | |
| !! | ACAGAAGCTGTTGGTGGTGT+TGG | - | chr4_4:79011997-79012016 | Msa0706110:three_prime_UTR | 50.0% |
| GGATTGCCATCTTACATGCG+TGG | - | chr4_4:79012018-79012037 | Msa0706110:three_prime_UTR | 50.0% | |
| ACAGCACCACGCATGTAAGA+TGG | + | chr4_4:79012027-79012046 | None:intergenic | 50.0% | |
| !!! | CATGCGTGGTGCTGTTTTTC+GGG | - | chr4_4:79012032-79012051 | Msa0706110:three_prime_UTR | 50.0% |
| CATATTCCTCGTCCCAAAGC+TGG | - | chr4_4:79012087-79012106 | Msa0706110:CDS | 50.0% | |
| ATCTCATGGCCCACAACACA+AGG | + | chr4_4:79012407-79012426 | None:intergenic | 50.0% | |
| GTTGTGGGCCATGAGATTAC+TGG | - | chr4_4:79012410-79012429 | Msa0706110:intron | 50.0% | |
| GGAGCCTTCATTATGCCTTG+CGG | - | chr4_4:79012668-79012687 | Msa0706110:intron | 50.0% | |
| GTTGCCGCAAGGCATAATGA+AGG | + | chr4_4:79012675-79012694 | None:intergenic | 50.0% | |
| GCTGTCTACAAACGGTATGC+AGG | - | chr4_4:79012773-79012792 | Msa0706110:intron | 50.0% | |
| ! | CGACTGTTTCTTCGAGGAAG+TGG | - | chr4_4:79012867-79012886 | Msa0706110:CDS | 50.0% |
| TGTGCCAGCAAATGCATTGG+CGG | - | chr4_4:79013167-79013186 | Msa0706110:CDS | 50.0% | |
| ! | GTTATTGGAACTGGGGGTGT+TGG | - | chr4_4:79013303-79013322 | Msa0706110:intron | 50.0% |
| GTTGATCAGAGCCTACTGCT+CGG | + | chr4_4:79013492-79013511 | None:intergenic | 50.0% | |
| !! | AGCTAGAGCATTTGGTGCCT+CGG | - | chr4_4:79013562-79013581 | Msa0706110:CDS | 50.0% |
| GTGCACTGAGCAAATGTCTG+TGG | + | chr4_4:79013905-79013924 | None:intergenic | 50.0% | |
| !! | ATGATTGGACTGGCACAAGC+TGG | - | chr4_4:79013956-79013975 | Msa0706110:CDS | 50.0% |
| ! | CTGGCACAAGCTGGTTCTTT+AGG | - | chr4_4:79013965-79013984 | Msa0706110:CDS | 50.0% |
| ! | AGCTGGTTCTTTAGGAGAGG+TGG | - | chr4_4:79013973-79013992 | Msa0706110:CDS | 50.0% |
| GCCCTGCTCAAGCCAAAATT+AGG | - | chr4_4:79014205-79014224 | Msa0706110:intron | 50.0% | |
| !!! | CCCCTAATTTTGGCTTGAGC+AGG | + | chr4_4:79014210-79014229 | None:intergenic | 50.0% |
| GCATTCCAGGATCTCAACGA+AGG | - | chr4_4:79014679-79014698 | Msa0706110:CDS | 50.0% | |
| ! | GCAATGCTTTTGTGCAGCGA+CGG | - | chr4_4:79014752-79014771 | Msa0706110:CDS | 50.0% |
| CGGCCATATGTCTCACACAT+TGG | - | chr4_4:79014772-79014791 | Msa0706110:CDS | 50.0% | |
| !! | AGTTCACCAGCTTTGGGACG+AGG | + | chr4_4:79012096-79012115 | None:intergenic | 55.0% |
| CAGTAGGAACAGTTGCCGCA+AGG | + | chr4_4:79012686-79012705 | None:intergenic | 55.0% | |
| AGTATCACCAGGGCGCACTT+CGG | + | chr4_4:79013277-79013296 | None:intergenic | 55.0% | |
| !! | GAACTGGGGGTGTTGGTTCT+AGG | - | chr4_4:79013310-79013329 | Msa0706110:intron | 55.0% |
| GGCCGCACAAGATAGAGTTC+TGG | + | chr4_4:79013731-79013750 | None:intergenic | 55.0% | |
| ! | GGAGTCAGGCAAAGCATTCC+AGG | - | chr4_4:79014666-79014685 | Msa0706110:intron | 55.0% |
| !! | CGCTGCACAAAAGCATTGCC+TGG | + | chr4_4:79014751-79014770 | None:intergenic | 55.0% |
| GCTCATATGGAGGGAGGGCT+AGG | - | chr4_4:79014560-79014579 | Msa0706110:intron | 60.0% | |
| CATGCAGCCGAAGTGCGCCC+TGG | - | chr4_4:79013267-79013286 | Msa0706110:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 79011768 | 79015043 | 79011768 | ID=Msa0706110;Name=Msa0706110 |
| chr4_4 | mRNA | 79011768 | 79015043 | 79011768 | ID=Msa0706110-mRNA-1;Parent=Msa0706110;Name=Msa0706110-mRNA-1;_AED=0.11;_eAED=0.11;_QI=97|0.85|0.75|1|1|1|8|305|472 |
| chr4_4 | exon | 79011768 | 79012264 | 79011768 | ID=Msa0706110-mRNA-1:exon:25375;Parent=Msa0706110-mRNA-1 |
| chr4_4 | exon | 79012790 | 79012960 | 79012790 | ID=Msa0706110-mRNA-1:exon:25374;Parent=Msa0706110-mRNA-1 |
| chr4_4 | exon | 79013120 | 79013261 | 79013120 | ID=Msa0706110-mRNA-1:exon:25373;Parent=Msa0706110-mRNA-1 |
| chr4_4 | exon | 79013480 | 79013769 | 79013480 | ID=Msa0706110-mRNA-1:exon:25372;Parent=Msa0706110-mRNA-1 |
| chr4_4 | exon | 79013867 | 79014016 | 79013867 | ID=Msa0706110-mRNA-1:exon:25371;Parent=Msa0706110-mRNA-1 |
| chr4_4 | exon | 79014099 | 79014168 | 79014099 | ID=Msa0706110-mRNA-1:exon:25370;Parent=Msa0706110-mRNA-1 |
| chr4_4 | exon | 79014331 | 79014466 | 79014331 | ID=Msa0706110-mRNA-1:exon:25369;Parent=Msa0706110-mRNA-1 |
| chr4_4 | exon | 79014679 | 79015043 | 79014679 | ID=Msa0706110-mRNA-1:exon:25368;Parent=Msa0706110-mRNA-1 |
| chr4_4 | five_prime_UTR | 79014947 | 79015043 | 79014947 | ID=Msa0706110-mRNA-1:five_prime_utr;Parent=Msa0706110-mRNA-1 |
| chr4_4 | CDS | 79014679 | 79014946 | 79014679 | ID=Msa0706110-mRNA-1:cds;Parent=Msa0706110-mRNA-1 |
| chr4_4 | CDS | 79014331 | 79014466 | 79014331 | ID=Msa0706110-mRNA-1:cds;Parent=Msa0706110-mRNA-1 |
| chr4_4 | CDS | 79014099 | 79014168 | 79014099 | ID=Msa0706110-mRNA-1:cds;Parent=Msa0706110-mRNA-1 |
| chr4_4 | CDS | 79013867 | 79014016 | 79013867 | ID=Msa0706110-mRNA-1:cds;Parent=Msa0706110-mRNA-1 |
| chr4_4 | CDS | 79013480 | 79013769 | 79013480 | ID=Msa0706110-mRNA-1:cds;Parent=Msa0706110-mRNA-1 |
| chr4_4 | CDS | 79013120 | 79013261 | 79013120 | ID=Msa0706110-mRNA-1:cds;Parent=Msa0706110-mRNA-1 |
| chr4_4 | CDS | 79012790 | 79012960 | 79012790 | ID=Msa0706110-mRNA-1:cds;Parent=Msa0706110-mRNA-1 |
| chr4_4 | CDS | 79012073 | 79012264 | 79012073 | ID=Msa0706110-mRNA-1:cds;Parent=Msa0706110-mRNA-1 |
| chr4_4 | three_prime_UTR | 79011768 | 79012072 | 79011768 | ID=Msa0706110-mRNA-1:three_prime_utr;Parent=Msa0706110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
