Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706080 | XP_003630404.1 | 88.771 | 472 | 6 | 3 | 1 | 472 | 1 | 425 | 0.0 | 830 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706080 | sp|A4YGN0|SUCD_METS5 | 39.709 | 413 | 195 | 6 | 57 | 469 | 1 | 359 | 1.40e-77 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706080 | G7LFT6 | 88.771 | 472 | 6 | 3 | 1 | 472 | 1 | 425 | 0.0 | 830 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006080 | Msa0706080 | 0.800236 | 1.584314e-48 | -8.615850e-47 |
| Msa0011920 | Msa0706080 | -0.807589 | 4.695127e-50 | -8.615850e-47 |
| Msa0030050 | Msa0706080 | 0.816128 | 6.488703e-52 | -8.615850e-47 |
| Msa0037180 | Msa0706080 | 0.818123 | 2.309827e-52 | -8.615850e-47 |
| Msa0053640 | Msa0706080 | 0.809907 | 1.500206e-50 | -8.615850e-47 |
| Msa0092220 | Msa0706080 | 0.829429 | 5.172899e-55 | -8.615850e-47 |
| Msa0619670 | Msa0706080 | 0.832820 | 7.601065e-56 | -8.615850e-47 |
| Msa0660050 | Msa0706080 | 0.930877 | 8.621207e-94 | -8.615850e-47 |
| Msa0700410 | Msa0706080 | 0.805220 | 1.482957e-49 | -8.615850e-47 |
| Msa0706080 | Msa0706110 | 0.943847 | 5.737890e-103 | -8.615850e-47 |
| Msa0706080 | Msa0801320 | -0.811772 | 5.921810e-51 | -8.615850e-47 |
| Msa0706080 | Msa0956600 | -0.803884 | 2.817393e-49 | -8.615850e-47 |
| Msa0706080 | Msa1055520 | -0.816382 | 5.693337e-52 | -8.615850e-47 |
| Msa0706080 | Msa1078590 | -0.807362 | 5.244985e-50 | -8.615850e-47 |
| Msa0706080 | Msa1078760 | -0.812238 | 4.688854e-51 | -8.615850e-47 |
| Msa0706080 | Msa1158620 | 0.805356 | 1.388789e-49 | -8.615850e-47 |
| Msa0706080 | Msa1169590 | -0.819862 | 9.291544e-53 | -8.615850e-47 |
| Msa0706080 | Msa1249600 | 0.809620 | 1.728907e-50 | -8.615850e-47 |
| Msa0145430 | Msa0706080 | 0.812701 | 3.713474e-51 | -8.615850e-47 |
| Msa0148040 | Msa0706080 | 0.806612 | 7.557991e-50 | -8.615850e-47 |
| Msa0233920 | Msa0706080 | 0.801641 | 8.182906e-49 | -8.615850e-47 |
| Msa0294200 | Msa0706080 | 0.812937 | 3.296522e-51 | -8.615850e-47 |
| Msa0502900 | Msa0706080 | -0.820277 | 7.468090e-53 | -8.615850e-47 |
| Msa0563440 | Msa0706080 | 0.808759 | 2.644801e-50 | -8.615850e-47 |
| Msa0569900 | Msa0706080 | 0.880656 | 4.584856e-70 | -8.615850e-47 |
| Msa0577690 | Msa0706080 | 0.815255 | 1.015106e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706080 | MtrunA17_Chr8g0385221 | 88.771 | 472 | 6 | 3 | 1 | 472 | 1 | 425 | 0.0 | 830 |
| Msa0706080 | MtrunA17_Chr7g0262421 | 28.261 | 414 | 233 | 10 | 58 | 462 | 13 | 371 | 2.11e-39 | 146 |
| Msa0706080 | MtrunA17_Chr1g0183131 | 27.737 | 411 | 237 | 10 | 58 | 461 | 11 | 368 | 3.40e-39 | 145 |
| Msa0706080 | MtrunA17_Chr3g0125961 | 28.605 | 423 | 237 | 15 | 58 | 471 | 12 | 378 | 1.07e-38 | 144 |
| Msa0706080 | MtrunA17_Chr3g0125911 | 28.132 | 423 | 239 | 15 | 58 | 471 | 12 | 378 | 1.08e-37 | 141 |
| Msa0706080 | MtrunA17_Chr3g0125941 | 28.029 | 421 | 238 | 15 | 60 | 471 | 15 | 379 | 1.63e-36 | 138 |
| Msa0706080 | MtrunA17_Chr5g0440521 | 28.162 | 419 | 242 | 11 | 58 | 469 | 21 | 387 | 2.17e-33 | 130 |
| Msa0706080 | MtrunA17_Chr4g0021211 | 26.841 | 421 | 243 | 10 | 58 | 471 | 36 | 398 | 1.65e-30 | 122 |
| Msa0706080 | MtrunA17_Chr3g0132351 | 26.573 | 429 | 256 | 11 | 51 | 471 | 12 | 389 | 3.78e-29 | 118 |
| Msa0706080 | MtrunA17_Chr6g0478081 | 26.492 | 419 | 247 | 11 | 58 | 471 | 13 | 375 | 1.25e-28 | 116 |
| Msa0706080 | MtrunA17_Chr5g0419681 | 25.366 | 410 | 246 | 9 | 67 | 471 | 20 | 374 | 1.46e-26 | 110 |
| Msa0706080 | MtrunA17_Chr3g0118441 | 25.714 | 420 | 254 | 11 | 50 | 462 | 8 | 376 | 2.82e-26 | 110 |
| Msa0706080 | MtrunA17_Chr7g0242291 | 27.990 | 418 | 233 | 15 | 58 | 462 | 23 | 385 | 2.68e-25 | 107 |
| Msa0706080 | MtrunA17_Chr3g0118431 | 31.513 | 238 | 153 | 8 | 234 | 463 | 56 | 291 | 1.05e-21 | 95.1 |
| Msa0706080 | MtrunA17_Chr7g0242301 | 25.879 | 398 | 208 | 10 | 71 | 462 | 1 | 317 | 1.36e-18 | 86.7 |
| Msa0706080 | MtrunA17_Chr6g0474141 | 27.706 | 231 | 151 | 7 | 232 | 456 | 127 | 347 | 9.64e-17 | 81.6 |
| Msa0706080 | MtrunA17_Chr8g0367151 | 25.305 | 328 | 163 | 11 | 71 | 390 | 25 | 278 | 1.90e-13 | 71.6 |
| Msa0706080 | MtrunA17_Chr4g0013331 | 28.862 | 246 | 157 | 7 | 232 | 469 | 137 | 372 | 2.26e-12 | 68.6 |
| Msa0706080 | MtrunA17_Chr2g0281281 | 28.796 | 191 | 131 | 5 | 243 | 432 | 92 | 278 | 3.03e-12 | 67.8 |
| Msa0706080 | MtrunA17_Chr2g0281301 | 25.275 | 273 | 170 | 8 | 190 | 432 | 23 | 291 | 1.64e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706080 | AT5G63620.1 | 67.789 | 475 | 100 | 5 | 1 | 472 | 3 | 427 | 0.0 | 639 |
| Msa0706080 | AT5G63620.2 | 67.368 | 475 | 102 | 5 | 1 | 472 | 3 | 427 | 0.0 | 636 |
| Msa0706080 | AT5G63620.3 | 62.994 | 354 | 78 | 4 | 1 | 351 | 3 | 306 | 2.02e-153 | 439 |
| Msa0706080 | AT5G43940.1 | 27.317 | 410 | 240 | 9 | 58 | 461 | 11 | 368 | 9.18e-39 | 145 |
| Msa0706080 | AT5G43940.2 | 27.338 | 417 | 244 | 10 | 60 | 470 | 25 | 388 | 1.64e-38 | 144 |
| Msa0706080 | AT1G77120.1 | 27.660 | 423 | 241 | 13 | 58 | 471 | 11 | 377 | 4.56e-37 | 140 |
| Msa0706080 | AT4G22110.2 | 30.641 | 421 | 229 | 12 | 52 | 462 | 12 | 379 | 1.01e-36 | 139 |
| Msa0706080 | AT4G22110.1 | 30.641 | 421 | 229 | 12 | 52 | 462 | 12 | 379 | 1.01e-36 | 139 |
| Msa0706080 | AT1G64710.1 | 26.034 | 411 | 249 | 8 | 58 | 462 | 11 | 372 | 8.33e-36 | 137 |
| Msa0706080 | AT5G42250.1 | 27.273 | 418 | 247 | 10 | 54 | 464 | 16 | 383 | 4.21e-34 | 132 |
| Msa0706080 | AT1G64710.2 | 25.879 | 398 | 240 | 8 | 71 | 462 | 1 | 349 | 5.40e-34 | 131 |
| Msa0706080 | AT1G32780.1 | 27.725 | 422 | 252 | 12 | 58 | 471 | 12 | 388 | 1.67e-33 | 130 |
| Msa0706080 | AT1G22430.2 | 28.979 | 421 | 236 | 12 | 52 | 462 | 11 | 378 | 2.58e-33 | 130 |
| Msa0706080 | AT1G22430.1 | 28.979 | 421 | 236 | 12 | 52 | 462 | 11 | 378 | 2.58e-33 | 130 |
| Msa0706080 | AT5G24760.1 | 26.969 | 419 | 241 | 12 | 60 | 471 | 19 | 379 | 3.46e-31 | 124 |
| Msa0706080 | AT1G22440.1 | 27.208 | 419 | 244 | 11 | 52 | 461 | 9 | 375 | 3.01e-30 | 121 |
| Msa0706080 | AT5G24760.2 | 26.716 | 408 | 234 | 12 | 71 | 471 | 1 | 350 | 3.65e-29 | 117 |
| Msa0706080 | AT5G24760.3 | 26.716 | 408 | 234 | 12 | 71 | 471 | 1 | 350 | 3.65e-29 | 117 |
| Msa0706080 | AT1G64710.3 | 25.449 | 334 | 201 | 6 | 133 | 462 | 14 | 303 | 2.38e-27 | 112 |
| Msa0706080 | AT4G22110.3 | 30.717 | 293 | 152 | 6 | 52 | 342 | 12 | 255 | 5.60e-24 | 101 |
| Msa0706080 | AT5G24760.4 | 31.557 | 244 | 158 | 6 | 234 | 471 | 25 | 265 | 9.32e-24 | 100 |
| Msa0706080 | AT1G22430.3 | 28.882 | 322 | 174 | 8 | 52 | 368 | 11 | 282 | 1.52e-23 | 101 |
| Msa0706080 | AT1G22430.4 | 28.425 | 292 | 158 | 6 | 52 | 341 | 11 | 253 | 9.93e-22 | 95.5 |
| Msa0706080 | AT1G22430.5 | 28.425 | 292 | 158 | 6 | 52 | 341 | 11 | 253 | 9.93e-22 | 95.5 |
| Msa0706080 | AT5G51970.1 | 26.122 | 245 | 165 | 7 | 232 | 472 | 129 | 361 | 3.92e-14 | 74.3 |
| Msa0706080 | AT5G51970.2 | 26.122 | 245 | 165 | 7 | 232 | 472 | 129 | 361 | 3.92e-14 | 74.3 |
| Msa0706080 | AT4G21580.2 | 27.000 | 200 | 141 | 5 | 239 | 436 | 55 | 251 | 1.34e-12 | 68.6 |
| Msa0706080 | AT5G61510.2 | 31.176 | 170 | 113 | 4 | 242 | 410 | 117 | 283 | 1.93e-12 | 68.9 |
| Msa0706080 | AT4G21580.1 | 27.000 | 200 | 141 | 5 | 239 | 436 | 88 | 284 | 2.55e-12 | 68.2 |
| Msa0706080 | AT5G61510.1 | 30.481 | 187 | 122 | 6 | 228 | 410 | 158 | 340 | 3.82e-12 | 68.6 |
Find 124 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTAACCTTTCTATGGTTT+TGG | 0.175052 | 4_4:-78981454 | None:intergenic |
| AAAATAATTGGCAAATTTAT+AGG | 0.215037 | 4_4:+78982085 | Msa0706080:CDS |
| GGTGATACTGTTGCTGTTAT+TGG | 0.219498 | 4_4:+78982277 | Msa0706080:CDS |
| CTGGCACAAGCTGGTTCTTT+AGG | 0.246946 | 4_4:+78982954 | Msa0706080:CDS |
| AGAGTAGACTCCTTTATAAT+TGG | 0.267174 | 4_4:+78982055 | Msa0706080:CDS |
| ATTGGAATACTGAAAATAAT+TGG | 0.285996 | 4_4:+78982073 | Msa0706080:CDS |
| ACCGATATACATGTATAGTA+TGG | 0.286726 | 4_4:+78982111 | Msa0706080:CDS |
| TGTGAACAGATAAAAGTTAT+TGG | 0.299278 | 4_4:+78983527 | Msa0706080:intron |
| TCGAGTTTCACCATCGTATA+AGG | 0.300970 | 4_4:-78981836 | None:intergenic |
| ACTGTTGCTGTTATTGGAAC+TGG | 0.304388 | 4_4:+78982283 | Msa0706080:CDS |
| TTTCAGTATTCCAATTATAA+AGG | 0.312430 | 4_4:-78982065 | None:intergenic |
| GATGAGAAGTTCACCAGCTT+TGG | 0.318763 | 4_4:-78981089 | None:intergenic |
| TATACCGAGTCTGCAATTCT+AGG | 0.324055 | 4_4:+78982199 | Msa0706080:CDS |
| TCGGTATATGGCATTGAGTT+TGG | 0.337585 | 4_4:-78982184 | None:intergenic |
| CCAATTGGATCTCGAGTTGT+TGG | 0.344296 | 4_4:+78981636 | Msa0706080:CDS |
| TTCAATGGTGAGAGGTTTGT+TGG | 0.348495 | 4_4:-78981047 | None:intergenic |
| AACTTCACGCAGGAAATTAC+TGG | 0.359885 | 4_4:+78982828 | Msa0706080:intron |
| GATGTTGCTGTTGAAGCCTT+AGG | 0.362906 | 4_4:+78982864 | Msa0706080:CDS |
| TTAATTAGATTGGCAGAAAC+AGG | 0.368222 | 4_4:+78983587 | Msa0706080:CDS |
| ATAAAAGTTATTGGCTCATA+TGG | 0.373792 | 4_4:+78983536 | Msa0706080:CDS |
| ATGAGAAGTTCACCAGCTTT+GGG | 0.377738 | 4_4:-78981088 | None:intergenic |
| TATAATTGCTGTTGATGTTC+AGG | 0.379502 | 4_4:+78982575 | Msa0706080:CDS |
| GGAGTCAGGCAAAGCATTCC+AGG | 0.386069 | 4_4:+78983655 | Msa0706080:CDS |
| TCTTGAAAAGGTTGTCTTGT+TGG | 0.386179 | 4_4:+78980897 | Msa0706080:CDS |
| TCTTCCAAAGTTAATTAGAT+TGG | 0.387780 | 4_4:+78983577 | Msa0706080:CDS |
| CTGCAGATAGCTAGAGCATT+TGG | 0.389366 | 4_4:+78982543 | Msa0706080:CDS |
| AGAATTGCAGACTCGGTATA+TGG | 0.391325 | 4_4:-78982196 | None:intergenic |
| GTTGTGGGCCATGAGATTAC+TGG | 0.411881 | 4_4:+78981399 | Msa0706080:CDS |
| GATTGTTTCAGGCTTCCAAT+TGG | 0.413947 | 4_4:+78981621 | Msa0706080:intron |
| CTGTTGCTGTTATTGGAACT+GGG | 0.417859 | 4_4:+78982284 | Msa0706080:CDS |
| CCCATACTATACATGTATAT+CGG | 0.418017 | 4_4:-78982112 | None:intergenic |
| ATAGTATAGCTCTACATTCC+AGG | 0.421704 | 4_4:+78983719 | Msa0706080:exon |
| TGAATCAAGTAAGAAGTAAG+AGG | 0.421869 | 4_4:-78981884 | None:intergenic |
| TTGTTTCATTTCAGTTTCAT+TGG | 0.430102 | 4_4:+78980796 | Msa0706080:five_prime_UTR |
| TCTGCCAATCTAATTAACTT+TGG | 0.433236 | 4_4:-78983581 | None:intergenic |
| TCATAAAATAACTGATTGTA+AGG | 0.434577 | 4_4:+78983854 | Msa0706080:three_prime_UTR |
| GCTCATATGGAGGGAGGGCT+AGG | 0.438318 | 4_4:+78983549 | Msa0706080:CDS |
| CGCTGCACAAAAGCATTGCC+TGG | 0.444811 | 4_4:-78983737 | None:intergenic |
| GGAGGAAAAGCAGTGATGAT+TGG | 0.449002 | 4_4:+78982930 | Msa0706080:CDS |
| TGCAACTCACACAATAAATT+CGG | 0.452277 | 4_4:+78982629 | Msa0706080:CDS |
| TTTGCTTATAACCGCGCAAA+AGG | 0.453633 | 4_4:+78981811 | Msa0706080:CDS |
| ACCAACAGCTTCTGTGTGAA+TGG | 0.454170 | 4_4:-78980978 | None:intergenic |
| ACAGAAGCTGTTGGTGGTGT+TGG | 0.457231 | 4_4:+78980986 | Msa0706080:CDS |
| CGACTGTTTCTTCGAGGAAG+TGG | 0.460944 | 4_4:+78981856 | Msa0706080:CDS |
| GAAACAGGTATCTTCGACCT+TGG | 0.461531 | 4_4:+78983602 | Msa0706080:CDS |
| TCAGCAACAACTTCTTGAAA+AGG | 0.464826 | 4_4:+78980885 | Msa0706080:CDS |
| TCAATGGTGAGAGGTTTGTT+GGG | 0.468644 | 4_4:-78981046 | None:intergenic |
| AGCTAGAGCATTTGGTGCCT+CGG | 0.473664 | 4_4:+78982551 | Msa0706080:CDS |
| CCAACAACTCGAGATCCAAT+TGG | 0.477791 | 4_4:-78981636 | None:intergenic |
| TTTCAGTTTCATTGGAAGAT+CGG | 0.481224 | 4_4:+78980804 | Msa0706080:five_prime_UTR |
| CATATTCCTCGTCCCAAAGC+TGG | 0.483522 | 4_4:+78981076 | Msa0706080:CDS |
| AATACCGCCAATGCATTTGC+TGG | 0.484950 | 4_4:-78982160 | None:intergenic |
| AGTTCACCAGCTTTGGGACG+AGG | 0.494387 | 4_4:-78981082 | None:intergenic |
| TACAATCATTTCACATGTAT+CGG | 0.496233 | 4_4:-78981914 | None:intergenic |
| CATGCAGCCGAAGTGCGCCC+TGG | 0.499244 | 4_4:+78982256 | Msa0706080:CDS |
| ATGTTGCTGTTGAAGCCTTA+GGG | 0.501604 | 4_4:+78982865 | Msa0706080:CDS |
| AGCTGGTTCTTTAGGAGAGG+TGG | 0.503154 | 4_4:+78982962 | Msa0706080:CDS |
| AGACACCTATATGTGTTCTC+AGG | 0.510626 | 4_4:-78983804 | None:intergenic |
| CAATGTTACCTTTGAACAGT+AGG | 0.517503 | 4_4:-78981688 | None:intergenic |
| GTCTAAGTGAGATTGAGAAA+TGG | 0.520409 | 4_4:+78980835 | Msa0706080:exon |
| AGGAATATGAAATTCTTCAA+TGG | 0.521033 | 4_4:-78981062 | None:intergenic |
| TTCTTGTAACAGCATGGCCA+AGG | 0.522537 | 4_4:-78983619 | None:intergenic |
| AAATAGACTTGTTCGCAGAA+AGG | 0.523418 | 4_4:+78982989 | Msa0706080:CDS |
| GAAACTCGACTGTTTCTTCG+AGG | 0.525121 | 4_4:+78981850 | Msa0706080:CDS |
| CAGGAAATTACTGGTGGAAA+GGG | 0.526933 | 4_4:+78982837 | Msa0706080:intron |
| ACAACACAAGGACTTGAAAA+CGG | 0.537012 | 4_4:-78981381 | None:intergenic |
| CGGCCATATGTCTCACACAT+TGG | 0.547239 | 4_4:+78983761 | Msa0706080:three_prime_UTR |
| GCAGGAAATTACTGGTGGAA+AGG | 0.554988 | 4_4:+78982836 | Msa0706080:intron |
| CCGATATACATGTATAGTAT+GGG | 0.556704 | 4_4:+78982112 | Msa0706080:CDS |
| AGTGGTGAAAGACTCGTCAT+TGG | 0.558258 | 4_4:+78983932 | Msa0706080:three_prime_UTR |
| ACAGCACCACGCATGTAAGA+TGG | 0.560649 | 4_4:-78981013 | None:intergenic |
| GCAAAAGGAACCTTATACGA+TGG | 0.560670 | 4_4:+78981826 | Msa0706080:CDS |
| CTGATTCCAAAACCATAGAA+AGG | 0.561548 | 4_4:+78981448 | Msa0706080:CDS |
| CTAGAGAAAGCAAAGACACT+TGG | 0.562324 | 4_4:+78982606 | Msa0706080:CDS |
| ATCTCATGGCCCACAACACA+AGG | 0.562994 | 4_4:-78981393 | None:intergenic |
| TCTGATCTTCATGTCATGAA+AGG | 0.564745 | 4_4:+78981351 | Msa0706080:CDS |
| AAATGTCTGTGGTCTCCCTA+AGG | 0.567546 | 4_4:-78982880 | None:intergenic |
| TGCACACAAAGTGTGAAAGA+TGG | 0.567900 | 4_4:+78982909 | Msa0706080:CDS |
| ACTCCAATGTGTGAGACATA+TGG | 0.568581 | 4_4:-78983764 | None:intergenic |
| TCCATTCACACAGAAGCTGT+TGG | 0.570592 | 4_4:+78980977 | Msa0706080:CDS |
| AAAGTTATTGGCTCATATGG+AGG | 0.577253 | 4_4:+78983539 | Msa0706080:CDS |
| TTTGCATCTTGCTCATGTAG+TGG | 0.582769 | 4_4:+78983914 | Msa0706080:three_prime_UTR |
| TGAAATTCTTCAATGGTGAG+AGG | 0.583588 | 4_4:-78981055 | None:intergenic |
| TGTTGAAGCTGATGCATGTA+CGG | 0.583923 | 4_4:+78980952 | Msa0706080:CDS |
| TCACACAATAAATTCGGCTA+AGG | 0.585756 | 4_4:+78982635 | Msa0706080:CDS |
| ATTCACACAGAAGCTGTTGG+TGG | 0.585825 | 4_4:+78980980 | Msa0706080:CDS |
| CTCACACATTGGAGTTGCAA+AGG | 0.592098 | 4_4:+78983772 | Msa0706080:three_prime_UTR |
| AGTATCACCAGGGCGCACTT+CGG | 0.593810 | 4_4:-78982263 | None:intergenic |
| CAACTTCACCAGTAATCTCA+TGG | 0.594487 | 4_4:-78981407 | None:intergenic |
| ACAAGCTGGTTCTTTAGGAG+AGG | 0.597825 | 4_4:+78982959 | Msa0706080:CDS |
| TGTTGCTGTTATTGGAACTG+GGG | 0.602671 | 4_4:+78982285 | Msa0706080:CDS |
| CAACTGTTCCTACTGTTCAA+AGG | 0.602922 | 4_4:+78981680 | Msa0706080:CDS |
| TGAAATGAAACAAAACAAAG+TGG | 0.605297 | 4_4:-78980786 | None:intergenic |
| ACATCCTAGAATTGCAGACT+CGG | 0.607209 | 4_4:-78982203 | None:intergenic |
| AAGTTATTGGCTCATATGGA+GGG | 0.607746 | 4_4:+78983540 | Msa0706080:CDS |
| GGAGCCTTCATTATGCCTTG+CGG | 0.609397 | 4_4:+78981657 | Msa0706080:CDS |
| TGGCATCTGCACTAGTTCGT+AGG | 0.610288 | 4_4:+78980855 | Msa0706080:CDS |
| TGTGCCAGCAAATGCATTGG+CGG | 0.610816 | 4_4:+78982156 | Msa0706080:CDS |
| CATTGGAGTTGCAAAGGTGT+TGG | 0.610873 | 4_4:+78983778 | Msa0706080:three_prime_UTR |
| ATGATTGGACTGGCACAAGC+TGG | 0.611907 | 4_4:+78982945 | Msa0706080:CDS |
| GTTGCTGTTATTGGAACTGG+GGG | 0.615280 | 4_4:+78982286 | Msa0706080:CDS |
| ATATACATGTATAGTATGGG+AGG | 0.616452 | 4_4:+78982115 | Msa0706080:CDS |
| ATAACAGCAACAGTATCACC+AGG | 0.620053 | 4_4:-78982274 | None:intergenic |
| AAGCTTCGCACAGATCATCA+TGG | 0.622065 | 4_4:-78981786 | None:intergenic |
| GTTGCCGCAAGGCATAATGA+AGG | 0.623436 | 4_4:-78981661 | None:intergenic |
| AAAAGCAGTGATGATTGGAC+TGG | 0.624735 | 4_4:+78982935 | Msa0706080:CDS |
| GTGCACTGAGCAAATGTCTG+TGG | 0.625723 | 4_4:-78982891 | None:intergenic |
| CAGTAGGAACAGTTGCCGCA+AGG | 0.626718 | 4_4:-78981672 | None:intergenic |
| GAATCAAGTAAGAAGTAAGA+GGG | 0.626857 | 4_4:-78981883 | None:intergenic |
| ACTGGTGAAGTTGTTGAACA+TGG | 0.627651 | 4_4:+78981417 | Msa0706080:CDS |
| GAACTTCTCATCAAAACCAA+GGG | 0.629940 | 4_4:+78981100 | Msa0706080:CDS |
| TTCACGCAGGAAATTACTGG+TGG | 0.641213 | 4_4:+78982831 | Msa0706080:intron |
| TATACATGTATAGTATGGGA+GGG | 0.642941 | 4_4:+78982116 | Msa0706080:CDS |
| TGAACTTCTCATCAAAACCA+AGG | 0.647879 | 4_4:+78981099 | Msa0706080:CDS |
| TATTGGCTCATATGGAGGGA+GGG | 0.648186 | 4_4:+78983544 | Msa0706080:CDS |
| TTATTGGCTCATATGGAGGG+AGG | 0.648294 | 4_4:+78983543 | Msa0706080:CDS |
| ATCAACAGCAATTATATCCG+AGG | 0.648309 | 4_4:-78982568 | None:intergenic |
| TGTTGTGCCAGCAAATGCAT+TGG | 0.658264 | 4_4:+78982153 | Msa0706080:CDS |
| GGATTGCCATCTTACATGCG+TGG | 0.668555 | 4_4:+78981007 | Msa0706080:CDS |
| GGTGTCCTGAGAACACATAT+AGG | 0.669550 | 4_4:+78983799 | Msa0706080:three_prime_UTR |
| GCATTCCAGGATCTCAACGA+AGG | 0.671434 | 4_4:+78983668 | Msa0706080:CDS |
| ACACAAAGTGTGAAAGATGG+AGG | 0.689218 | 4_4:+78982912 | Msa0706080:CDS |
| TCATGACATGAAGATCAGAG+TGG | 0.751085 | 4_4:-78981347 | None:intergenic |
| TAACAGCAACAGTATCACCA+GGG | 0.751466 | 4_4:-78982273 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTGATATTGTTATGAT+TGG | + | chr4_4:78981262-78981281 | Msa0706080:intron | 15.0% |
| !! | AAAATAATTGGCAAATTTAT+AGG | + | chr4_4:78982085-78982104 | Msa0706080:CDS | 15.0% |
| !! | TAGAGAAAACAATTAAATAA+AGG | - | chr4_4:78982809-78982828 | None:intergenic | 15.0% |
| !! | AAAAAACTTTAACCTTTCTA+TGG | - | chr4_4:78981463-78981482 | None:intergenic | 20.0% |
| !! | TAAATTAAGCTTGTCTATAT+GGG | - | chr4_4:78981953-78981972 | None:intergenic | 20.0% |
| !! | ATAAATTAAGCTTGTCTATA+TGG | - | chr4_4:78981954-78981973 | None:intergenic | 20.0% |
| !! | TTTCAGTATTCCAATTATAA+AGG | - | chr4_4:78982068-78982087 | None:intergenic | 20.0% |
| !! | ATTGGAATACTGAAAATAAT+TGG | + | chr4_4:78982073-78982092 | Msa0706080:CDS | 20.0% |
| !!! | TATACAAGTATCTTTTCAAT+GGG | - | chr4_4:78982666-78982685 | None:intergenic | 20.0% |
| !!! | ATATACAAGTATCTTTTCAA+TGG | - | chr4_4:78982667-78982686 | None:intergenic | 20.0% |
| !! | GATTAAATTGTTCATATCAA+GGG | + | chr4_4:78983299-78983318 | Msa0706080:intron | 20.0% |
| !!! | ACATACAAATTTAATTTGCT+TGG | - | chr4_4:78983510-78983529 | None:intergenic | 20.0% |
| !!! | TTACAATCAGTTATTTTATG+AGG | - | chr4_4:78983855-78983874 | None:intergenic | 20.0% |
| !! | TCATAAAATAACTGATTGTA+AGG | + | chr4_4:78983854-78983873 | Msa0706080:three_prime_UTR | 20.0% |
| ! | TGAAATGAAACAAAACAAAG+TGG | - | chr4_4:78980789-78980808 | None:intergenic | 25.0% |
| ! | TTGTTTCATTTCAGTTTCAT+TGG | + | chr4_4:78980796-78980815 | Msa0706080:five_prime_UTR | 25.0% |
| ! | AGGAATATGAAATTCTTCAA+TGG | - | chr4_4:78981065-78981084 | None:intergenic | 25.0% |
| ! | TTTGATATTGTTATGATTGG+TGG | + | chr4_4:78981265-78981284 | Msa0706080:intron | 25.0% |
| !! | TTATGATTGGTGGTTATTAT+TGG | + | chr4_4:78981275-78981294 | Msa0706080:intron | 25.0% |
| ! | TACAATCATTTCACATGTAT+CGG | - | chr4_4:78981917-78981936 | None:intergenic | 25.0% |
| ! | TAACTAAATCAATTGTCAAG+TGG | + | chr4_4:78982322-78982341 | Msa0706080:intron | 25.0% |
| ! | GAAACAGCAAAAATAGAAAA+AGG | - | chr4_4:78982387-78982406 | None:intergenic | 25.0% |
| ! | AAATGATTCAAGATAACCTT+TGG | + | chr4_4:78983276-78983295 | Msa0706080:intron | 25.0% |
| ! | AATGATTCAAGATAACCTTT+GGG | + | chr4_4:78983277-78983296 | Msa0706080:intron | 25.0% |
| ! | TATGAACAATTTAATCCCAA+AGG | - | chr4_4:78983295-78983314 | None:intergenic | 25.0% |
| ! | GGATTAAATTGTTCATATCA+AGG | + | chr4_4:78983298-78983317 | Msa0706080:intron | 25.0% |
| ! | ATGAATTTGTCAAATAAGTG+AGG | - | chr4_4:78983487-78983506 | None:intergenic | 25.0% |
| ! | TGTGAACAGATAAAAGTTAT+TGG | + | chr4_4:78983527-78983546 | Msa0706080:intron | 25.0% |
| !!! | ATAAAAGTTATTGGCTCATA+TGG | + | chr4_4:78983536-78983555 | Msa0706080:CDS | 25.0% |
| ! | TCTTCCAAAGTTAATTAGAT+TGG | + | chr4_4:78983577-78983596 | Msa0706080:CDS | 25.0% |
| !! | TACAAGAAAATACACTTTTG+AGG | + | chr4_4:78983634-78983653 | Msa0706080:CDS | 25.0% |
| TTTCAGTTTCATTGGAAGAT+CGG | + | chr4_4:78980804-78980823 | Msa0706080:five_prime_UTR | 30.0% | |
| ! | AGCTGCAATATACAAGTTTT+AGG | - | chr4_4:78981208-78981227 | None:intergenic | 30.0% |
| TGTATATTGCAGCTTAATTG+TGG | + | chr4_4:78981214-78981233 | Msa0706080:intron | 30.0% | |
| !!! | AGATGTGATTTTTTGAATGC+AGG | + | chr4_4:78981312-78981331 | Msa0706080:intron | 30.0% |
| ! | CTTTAACCTTTCTATGGTTT+TGG | - | chr4_4:78981457-78981476 | None:intergenic | 30.0% |
| AGCATTATCACACAAAAATG+TGG | - | chr4_4:78981520-78981539 | None:intergenic | 30.0% | |
| AGCAAAAAGGAATAACAAGT+AGG | + | chr4_4:78981589-78981608 | Msa0706080:intron | 30.0% | |
| TCCATTTGTCAACTGAATTA+TGG | + | chr4_4:78981726-78981745 | Msa0706080:intron | 30.0% | |
| ACCATAATTCAGTTGACAAA+TGG | - | chr4_4:78981730-78981749 | None:intergenic | 30.0% | |
| GAATCAAGTAAGAAGTAAGA+GGG | - | chr4_4:78981886-78981905 | None:intergenic | 30.0% | |
| TGAATCAAGTAAGAAGTAAG+AGG | - | chr4_4:78981887-78981906 | None:intergenic | 30.0% | |
| GACTATGTAAACACATACTT+AGG | - | chr4_4:78981978-78981997 | None:intergenic | 30.0% | |
| AGAGTAGACTCCTTTATAAT+TGG | + | chr4_4:78982055-78982074 | Msa0706080:CDS | 30.0% | |
| ACCGATATACATGTATAGTA+TGG | + | chr4_4:78982111-78982130 | Msa0706080:CDS | 30.0% | |
| CCCATACTATACATGTATAT+CGG | - | chr4_4:78982115-78982134 | None:intergenic | 30.0% | |
| CCGATATACATGTATAGTAT+GGG | + | chr4_4:78982112-78982131 | Msa0706080:CDS | 30.0% | |
| ATATACATGTATAGTATGGG+AGG | + | chr4_4:78982115-78982134 | Msa0706080:CDS | 30.0% | |
| TATACATGTATAGTATGGGA+GGG | + | chr4_4:78982116-78982135 | Msa0706080:CDS | 30.0% | |
| GCAAAAATAGAAAAAGGAAG+TGG | - | chr4_4:78982381-78982400 | None:intergenic | 30.0% | |
| TTCGATAATGCTTGCTTAAA+TGG | + | chr4_4:78982404-78982423 | Msa0706080:intron | 30.0% | |
| AAGCGGTGATAAAGTTAAAA+TGG | - | chr4_4:78982515-78982534 | None:intergenic | 30.0% | |
| ! | TATAATTGCTGTTGATGTTC+AGG | + | chr4_4:78982575-78982594 | Msa0706080:CDS | 30.0% |
| TGCAACTCACACAATAAATT+CGG | + | chr4_4:78982629-78982648 | Msa0706080:CDS | 30.0% | |
| !!! | ACCACTAGTTTTATTCATGT+TGG | + | chr4_4:78983075-78983094 | Msa0706080:intron | 30.0% |
| TCCAACATGAATAAAACTAG+TGG | - | chr4_4:78983079-78983098 | None:intergenic | 30.0% | |
| ! | TAAGAATTAGGTTGTACAAG+TGG | + | chr4_4:78983227-78983246 | Msa0706080:intron | 30.0% |
| TTGTTCAACAGTTCAAGTAA+AGG | - | chr4_4:78983258-78983277 | None:intergenic | 30.0% | |
| CACTCAATTGAGTTTAAAAG+CGG | - | chr4_4:78983325-78983344 | None:intergenic | 30.0% | |
| TCTGCCAATCTAATTAACTT+TGG | - | chr4_4:78983584-78983603 | None:intergenic | 30.0% | |
| TTAATTAGATTGGCAGAAAC+AGG | + | chr4_4:78983587-78983606 | Msa0706080:CDS | 30.0% | |
| ! | TGTATTTTCTTGTAACAGCA+TGG | - | chr4_4:78983628-78983647 | None:intergenic | 30.0% |
| GTCTAAGTGAGATTGAGAAA+TGG | + | chr4_4:78980835-78980854 | Msa0706080:exon | 35.0% | |
| TCAGCAACAACTTCTTGAAA+AGG | + | chr4_4:78980885-78980904 | Msa0706080:CDS | 35.0% | |
| TCTTGAAAAGGTTGTCTTGT+TGG | + | chr4_4:78980897-78980916 | Msa0706080:CDS | 35.0% | |
| TGAAATTCTTCAATGGTGAG+AGG | - | chr4_4:78981058-78981077 | None:intergenic | 35.0% | |
| TGAACTTCTCATCAAAACCA+AGG | + | chr4_4:78981099-78981118 | Msa0706080:CDS | 35.0% | |
| GAACTTCTCATCAAAACCAA+GGG | + | chr4_4:78981100-78981119 | Msa0706080:CDS | 35.0% | |
| AGAGAGATAAACAATACCCT+TGG | - | chr4_4:78981119-78981138 | None:intergenic | 35.0% | |
| !!! | GATTTTTTGAATGCAGGATG+TGG | + | chr4_4:78981318-78981337 | Msa0706080:intron | 35.0% |
| TCTGATCTTCATGTCATGAA+AGG | + | chr4_4:78981351-78981370 | Msa0706080:CDS | 35.0% | |
| ACAACACAAGGACTTGAAAA+CGG | - | chr4_4:78981384-78981403 | None:intergenic | 35.0% | |
| !!! | TTTTCAAGTCCTTGTGTTGT+GGG | + | chr4_4:78981384-78981403 | Msa0706080:CDS | 35.0% |
| CTGATTCCAAAACCATAGAA+AGG | + | chr4_4:78981448-78981467 | Msa0706080:CDS | 35.0% | |
| ! | GTTCTTGATGACTAGCAAAA+AGG | + | chr4_4:78981576-78981595 | Msa0706080:intron | 35.0% |
| GGATTGTTCTTGATTGTTTC+AGG | + | chr4_4:78981610-78981629 | Msa0706080:intron | 35.0% | |
| CAATGTTACCTTTGAACAGT+AGG | - | chr4_4:78981691-78981710 | None:intergenic | 35.0% | |
| TGTCAACTGAATTATGGTCT+CGG | + | chr4_4:78981732-78981751 | Msa0706080:intron | 35.0% | |
| GTGTTTATGCTGTCTACAAA+CGG | + | chr4_4:78981754-78981773 | Msa0706080:intron | 35.0% | |
| ! | AGTCATAGTTTTCTCTGCTA+TGG | + | chr4_4:78981994-78982013 | Msa0706080:intron | 35.0% |
| !!! | TGTGCTGTTTTTACTGCTTA+TGG | + | chr4_4:78982223-78982242 | Msa0706080:CDS | 35.0% |
| ! | TTTTACTGCTTATGGTGCAA+TGG | + | chr4_4:78982231-78982250 | Msa0706080:CDS | 35.0% |
| ! | TTTTCATATATCCGAGCAGT+AGG | + | chr4_4:78982467-78982486 | Msa0706080:intron | 35.0% |
| ATCAACAGCAATTATATCCG+AGG | - | chr4_4:78982571-78982590 | None:intergenic | 35.0% | |
| TCACACAATAAATTCGGCTA+AGG | + | chr4_4:78982635-78982654 | Msa0706080:CDS | 35.0% | |
| GTTCTGGCAATTAAACAATG+AGG | - | chr4_4:78982704-78982723 | None:intergenic | 35.0% | |
| ! | AAATAGACTTGTTCGCAGAA+AGG | + | chr4_4:78982989-78983008 | Msa0706080:CDS | 35.0% |
| ! | TATTCCCATACCCCTAATTT+TGG | - | chr4_4:78983209-78983228 | None:intergenic | 35.0% |
| !! | AAAGTTATTGGCTCATATGG+AGG | + | chr4_4:78983539-78983558 | Msa0706080:CDS | 35.0% |
| !! | AAGTTATTGGCTCATATGGA+GGG | + | chr4_4:78983540-78983559 | Msa0706080:CDS | 35.0% |
| !! | AAATACACTTTTGAGGAGTC+AGG | + | chr4_4:78983641-78983660 | Msa0706080:CDS | 35.0% |
| CTCAACGAAGGAAAAATAGT+CGG | + | chr4_4:78983680-78983699 | Msa0706080:CDS | 35.0% | |
| ! | ATAGTATAGCTCTACATTCC+AGG | + | chr4_4:78983719-78983738 | Msa0706080:exon | 35.0% |
| TGTTGAAGCTGATGCATGTA+CGG | + | chr4_4:78980952-78980971 | Msa0706080:CDS | 40.0% | |
| ! | TCAATGGTGAGAGGTTTGTT+GGG | - | chr4_4:78981049-78981068 | None:intergenic | 40.0% |
| TTCAATGGTGAGAGGTTTGT+TGG | - | chr4_4:78981050-78981069 | None:intergenic | 40.0% | |
| ATGAGAAGTTCACCAGCTTT+GGG | - | chr4_4:78981091-78981110 | None:intergenic | 40.0% | |
| TTGCAGCTTAATTGTGGTTG+TGG | + | chr4_4:78981220-78981239 | Msa0706080:intron | 40.0% | |
| TCATGACATGAAGATCAGAG+TGG | - | chr4_4:78981350-78981369 | None:intergenic | 40.0% | |
| !!! | GTTTTCAAGTCCTTGTGTTG+TGG | + | chr4_4:78981383-78981402 | Msa0706080:CDS | 40.0% |
| CAACTTCACCAGTAATCTCA+TGG | - | chr4_4:78981410-78981429 | None:intergenic | 40.0% | |
| ACTGGTGAAGTTGTTGAACA+TGG | + | chr4_4:78981417-78981436 | Msa0706080:CDS | 40.0% | |
| GATTGTTTCAGGCTTCCAAT+TGG | + | chr4_4:78981621-78981640 | Msa0706080:intron | 40.0% | |
| CAACTGTTCCTACTGTTCAA+AGG | + | chr4_4:78981680-78981699 | Msa0706080:CDS | 40.0% | |
| TTTGCTTATAACCGCGCAAA+AGG | + | chr4_4:78981811-78981830 | Msa0706080:CDS | 40.0% | |
| GCAAAAGGAACCTTATACGA+TGG | + | chr4_4:78981826-78981845 | Msa0706080:CDS | 40.0% | |
| TCGAGTTTCACCATCGTATA+AGG | - | chr4_4:78981839-78981858 | None:intergenic | 40.0% | |
| ! | TCGGTATATGGCATTGAGTT+TGG | - | chr4_4:78982187-78982206 | None:intergenic | 40.0% |
| ! | AGAATTGCAGACTCGGTATA+TGG | - | chr4_4:78982199-78982218 | None:intergenic | 40.0% |
| TATACCGAGTCTGCAATTCT+AGG | + | chr4_4:78982199-78982218 | Msa0706080:CDS | 40.0% | |
| ACATCCTAGAATTGCAGACT+CGG | - | chr4_4:78982206-78982225 | None:intergenic | 40.0% | |
| TAACAGCAACAGTATCACCA+GGG | - | chr4_4:78982276-78982295 | None:intergenic | 40.0% | |
| ATAACAGCAACAGTATCACC+AGG | - | chr4_4:78982277-78982296 | None:intergenic | 40.0% | |
| ! | GGTGATACTGTTGCTGTTAT+TGG | + | chr4_4:78982277-78982296 | Msa0706080:CDS | 40.0% |
| ! | ACTGTTGCTGTTATTGGAAC+TGG | + | chr4_4:78982283-78982302 | Msa0706080:CDS | 40.0% |
| ! | CTGTTGCTGTTATTGGAACT+GGG | + | chr4_4:78982284-78982303 | Msa0706080:CDS | 40.0% |
| ! | TGTTGCTGTTATTGGAACTG+GGG | + | chr4_4:78982285-78982304 | Msa0706080:CDS | 40.0% |
| CTAGAGAAAGCAAAGACACT+TGG | + | chr4_4:78982606-78982625 | Msa0706080:CDS | 40.0% | |
| TGTTAGGAGCTAATAGACAG+AGG | - | chr4_4:78982741-78982760 | None:intergenic | 40.0% | |
| TTATGCACGATAGTGTGAGT+GGG | - | chr4_4:78982767-78982786 | None:intergenic | 40.0% | |
| TTTATGCACGATAGTGTGAG+TGG | - | chr4_4:78982768-78982787 | None:intergenic | 40.0% | |
| ! | TGTTTTCTCTAACTTCACGC+AGG | + | chr4_4:78982818-78982837 | Msa0706080:intron | 40.0% |
| AACTTCACGCAGGAAATTAC+TGG | + | chr4_4:78982828-78982847 | Msa0706080:intron | 40.0% | |
| CAGGAAATTACTGGTGGAAA+GGG | + | chr4_4:78982837-78982856 | Msa0706080:intron | 40.0% | |
| ! | ATGTTGCTGTTGAAGCCTTA+GGG | + | chr4_4:78982865-78982884 | Msa0706080:CDS | 40.0% |
| TGCACACAAAGTGTGAAAGA+TGG | + | chr4_4:78982909-78982928 | Msa0706080:CDS | 40.0% | |
| ACACAAAGTGTGAAAGATGG+AGG | + | chr4_4:78982912-78982931 | Msa0706080:CDS | 40.0% | |
| AAAAGCAGTGATGATTGGAC+TGG | + | chr4_4:78982935-78982954 | Msa0706080:CDS | 40.0% | |
| TCAAGCCAAAATTAGGGGTA+TGG | + | chr4_4:78983201-78983220 | Msa0706080:intron | 40.0% | |
| ! | CAAGCCAAAATTAGGGGTAT+GGG | + | chr4_4:78983202-78983221 | Msa0706080:intron | 40.0% |
| GGGGTATGGGAATAAGAATT+AGG | + | chr4_4:78983215-78983234 | Msa0706080:intron | 40.0% | |
| ACTTCACGTCAATTCTGCTT+TGG | - | chr4_4:78983410-78983429 | None:intergenic | 40.0% | |
| ! | TAAGTGAGGTGCTACACTAA+AGG | - | chr4_4:78983473-78983492 | None:intergenic | 40.0% |
| ! | TTTTTCCTTCGTTGAGATCC+TGG | - | chr4_4:78983676-78983695 | None:intergenic | 40.0% |
| ACGAAGGAAAAATAGTCGGT+CGG | + | chr4_4:78983684-78983703 | Msa0706080:CDS | 40.0% | |
| ACTCCAATGTGTGAGACATA+TGG | - | chr4_4:78983767-78983786 | None:intergenic | 40.0% | |
| AGACACCTATATGTGTTCTC+AGG | - | chr4_4:78983807-78983826 | None:intergenic | 40.0% | |
| TTTGCATCTTGCTCATGTAG+TGG | + | chr4_4:78983914-78983933 | Msa0706080:three_prime_UTR | 40.0% | |
| TCCATTCACACAGAAGCTGT+TGG | + | chr4_4:78980977-78980996 | Msa0706080:CDS | 45.0% | |
| ACCAACAGCTTCTGTGTGAA+TGG | - | chr4_4:78980981-78981000 | None:intergenic | 45.0% | |
| ATTCACACAGAAGCTGTTGG+TGG | + | chr4_4:78980980-78980999 | Msa0706080:CDS | 45.0% | |
| !!! | ACATGCGTGGTGCTGTTTTT+CGG | + | chr4_4:78981020-78981039 | Msa0706080:CDS | 45.0% |
| GATGAGAAGTTCACCAGCTT+TGG | - | chr4_4:78981092-78981111 | None:intergenic | 45.0% | |
| CCAACAACTCGAGATCCAAT+TGG | - | chr4_4:78981639-78981658 | None:intergenic | 45.0% | |
| ! | CCAATTGGATCTCGAGTTGT+TGG | + | chr4_4:78981636-78981655 | Msa0706080:CDS | 45.0% |
| CTGTCTACAAACGGTATGCA+GGG | + | chr4_4:78981763-78981782 | Msa0706080:intron | 45.0% | |
| AAGCTTCGCACAGATCATCA+TGG | - | chr4_4:78981789-78981808 | None:intergenic | 45.0% | |
| ! | CGTATAAGGTTCCTTTTGCG+CGG | - | chr4_4:78981825-78981844 | None:intergenic | 45.0% |
| ! | GAAACTCGACTGTTTCTTCG+AGG | + | chr4_4:78981850-78981869 | Msa0706080:CDS | 45.0% |
| TGTTGTGCCAGCAAATGCAT+TGG | + | chr4_4:78982153-78982172 | Msa0706080:CDS | 45.0% | |
| AATACCGCCAATGCATTTGC+TGG | - | chr4_4:78982163-78982182 | None:intergenic | 45.0% | |
| ! | GTTGCTGTTATTGGAACTGG+GGG | + | chr4_4:78982286-78982305 | Msa0706080:CDS | 45.0% |
| TATCTGCAGACAACTGGAAG+CGG | - | chr4_4:78982532-78982551 | None:intergenic | 45.0% | |
| TCTAGCTATCTGCAGACAAC+TGG | - | chr4_4:78982538-78982557 | None:intergenic | 45.0% | |
| ! | CTGCAGATAGCTAGAGCATT+TGG | + | chr4_4:78982543-78982562 | Msa0706080:CDS | 45.0% |
| TGCCAGAACTCTATCTTGTG+CGG | + | chr4_4:78982715-78982734 | Msa0706080:intron | 45.0% | |
| TAGTGTGAGTGGGTGATGTT+AGG | - | chr4_4:78982757-78982776 | None:intergenic | 45.0% | |
| TTCACGCAGGAAATTACTGG+TGG | + | chr4_4:78982831-78982850 | Msa0706080:intron | 45.0% | |
| GCAGGAAATTACTGGTGGAA+AGG | + | chr4_4:78982836-78982855 | Msa0706080:intron | 45.0% | |
| ! | GATGTTGCTGTTGAAGCCTT+AGG | + | chr4_4:78982864-78982883 | Msa0706080:CDS | 45.0% |
| AAATGTCTGTGGTCTCCCTA+AGG | - | chr4_4:78982883-78982902 | None:intergenic | 45.0% | |
| GGAGGAAAAGCAGTGATGAT+TGG | + | chr4_4:78982930-78982949 | Msa0706080:CDS | 45.0% | |
| ! | ACAAGCTGGTTCTTTAGGAG+AGG | + | chr4_4:78982959-78982978 | Msa0706080:CDS | 45.0% |
| !!! | CCCTAATTTTGGCTTGAGCA+GGG | - | chr4_4:78983198-78983217 | None:intergenic | 45.0% |
| CCCTGCTCAAGCCAAAATTA+GGG | + | chr4_4:78983195-78983214 | Msa0706080:intron | 45.0% | |
| CCTGCTCAAGCCAAAATTAG+GGG | + | chr4_4:78983196-78983215 | Msa0706080:intron | 45.0% | |
| !! | TTATTGGCTCATATGGAGGG+AGG | + | chr4_4:78983543-78983562 | Msa0706080:CDS | 45.0% |
| !! | TATTGGCTCATATGGAGGGA+GGG | + | chr4_4:78983544-78983563 | Msa0706080:CDS | 45.0% |
| GAAACAGGTATCTTCGACCT+TGG | + | chr4_4:78983602-78983621 | Msa0706080:CDS | 45.0% | |
| TTCTTGTAACAGCATGGCCA+AGG | - | chr4_4:78983622-78983641 | None:intergenic | 45.0% | |
| CGAAGGAAAAATAGTCGGTC+GGG | + | chr4_4:78983685-78983704 | Msa0706080:CDS | 45.0% | |
| CTCACACATTGGAGTTGCAA+AGG | + | chr4_4:78983772-78983791 | Msa0706080:three_prime_UTR | 45.0% | |
| ! | CATTGGAGTTGCAAAGGTGT+TGG | + | chr4_4:78983778-78983797 | Msa0706080:three_prime_UTR | 45.0% |
| GGTGTCCTGAGAACACATAT+AGG | + | chr4_4:78983799-78983818 | Msa0706080:three_prime_UTR | 45.0% | |
| AGTGGTGAAAGACTCGTCAT+TGG | + | chr4_4:78983932-78983951 | Msa0706080:three_prime_UTR | 45.0% | |
| TGGCATCTGCACTAGTTCGT+AGG | + | chr4_4:78980855-78980874 | Msa0706080:CDS | 50.0% | |
| !! | ACAGAAGCTGTTGGTGGTGT+TGG | + | chr4_4:78980986-78981005 | Msa0706080:CDS | 50.0% |
| GGATTGCCATCTTACATGCG+TGG | + | chr4_4:78981007-78981026 | Msa0706080:CDS | 50.0% | |
| ACAGCACCACGCATGTAAGA+TGG | - | chr4_4:78981016-78981035 | None:intergenic | 50.0% | |
| !!! | CATGCGTGGTGCTGTTTTTC+GGG | + | chr4_4:78981021-78981040 | Msa0706080:CDS | 50.0% |
| CATATTCCTCGTCCCAAAGC+TGG | + | chr4_4:78981076-78981095 | Msa0706080:CDS | 50.0% | |
| ATCTCATGGCCCACAACACA+AGG | - | chr4_4:78981396-78981415 | None:intergenic | 50.0% | |
| GTTGTGGGCCATGAGATTAC+TGG | + | chr4_4:78981399-78981418 | Msa0706080:CDS | 50.0% | |
| GGAGCCTTCATTATGCCTTG+CGG | + | chr4_4:78981657-78981676 | Msa0706080:CDS | 50.0% | |
| GTTGCCGCAAGGCATAATGA+AGG | - | chr4_4:78981664-78981683 | None:intergenic | 50.0% | |
| GCTGTCTACAAACGGTATGC+AGG | + | chr4_4:78981762-78981781 | Msa0706080:intron | 50.0% | |
| ! | CGACTGTTTCTTCGAGGAAG+TGG | + | chr4_4:78981856-78981875 | Msa0706080:CDS | 50.0% |
| TGTGCCAGCAAATGCATTGG+CGG | + | chr4_4:78982156-78982175 | Msa0706080:CDS | 50.0% | |
| ! | GTTATTGGAACTGGGGGTGT+TGG | + | chr4_4:78982292-78982311 | Msa0706080:CDS | 50.0% |
| GTTGATCAGAGCCTACTGCT+CGG | - | chr4_4:78982481-78982500 | None:intergenic | 50.0% | |
| !! | AGCTAGAGCATTTGGTGCCT+CGG | + | chr4_4:78982551-78982570 | Msa0706080:CDS | 50.0% |
| GTGCACTGAGCAAATGTCTG+TGG | - | chr4_4:78982894-78982913 | None:intergenic | 50.0% | |
| !! | ATGATTGGACTGGCACAAGC+TGG | + | chr4_4:78982945-78982964 | Msa0706080:CDS | 50.0% |
| ! | CTGGCACAAGCTGGTTCTTT+AGG | + | chr4_4:78982954-78982973 | Msa0706080:CDS | 50.0% |
| ! | AGCTGGTTCTTTAGGAGAGG+TGG | + | chr4_4:78982962-78982981 | Msa0706080:CDS | 50.0% |
| GCCCTGCTCAAGCCAAAATT+AGG | + | chr4_4:78983194-78983213 | Msa0706080:intron | 50.0% | |
| !!! | CCCCTAATTTTGGCTTGAGC+AGG | - | chr4_4:78983199-78983218 | None:intergenic | 50.0% |
| GCATTCCAGGATCTCAACGA+AGG | + | chr4_4:78983668-78983687 | Msa0706080:CDS | 50.0% | |
| ! | GCAATGCTTTTGTGCAGCGA+CGG | + | chr4_4:78983741-78983760 | Msa0706080:three_prime_UTR | 50.0% |
| CGGCCATATGTCTCACACAT+TGG | + | chr4_4:78983761-78983780 | Msa0706080:three_prime_UTR | 50.0% | |
| !! | AGTTCACCAGCTTTGGGACG+AGG | - | chr4_4:78981085-78981104 | None:intergenic | 55.0% |
| CAGTAGGAACAGTTGCCGCA+AGG | - | chr4_4:78981675-78981694 | None:intergenic | 55.0% | |
| AGTATCACCAGGGCGCACTT+CGG | - | chr4_4:78982266-78982285 | None:intergenic | 55.0% | |
| !! | GAACTGGGGGTGTTGGTTCT+AGG | + | chr4_4:78982299-78982318 | Msa0706080:CDS | 55.0% |
| GGCCGCACAAGATAGAGTTC+TGG | - | chr4_4:78982720-78982739 | None:intergenic | 55.0% | |
| ! | GGAGTCAGGCAAAGCATTCC+AGG | + | chr4_4:78983655-78983674 | Msa0706080:CDS | 55.0% |
| !! | CGCTGCACAAAAGCATTGCC+TGG | - | chr4_4:78983740-78983759 | None:intergenic | 55.0% |
| GCTCATATGGAGGGAGGGCT+AGG | + | chr4_4:78983549-78983568 | Msa0706080:CDS | 60.0% | |
| CATGCAGCCGAAGTGCGCCC+TGG | + | chr4_4:78982256-78982275 | Msa0706080:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 78980757 | 78984032 | 78980757 | ID=Msa0706080;Name=Msa0706080 |
| chr4_4 | mRNA | 78980757 | 78984032 | 78980757 | ID=Msa0706080-mRNA-1;Parent=Msa0706080;Name=Msa0706080-mRNA-1;_AED=0.11;_eAED=0.11;_QI=97|0.85|0.75|1|1|1|8|305|472 |
| chr4_4 | exon | 78980757 | 78981121 | 78980757 | ID=Msa0706080-mRNA-1:exon:25261;Parent=Msa0706080-mRNA-1 |
| chr4_4 | exon | 78981334 | 78981469 | 78981334 | ID=Msa0706080-mRNA-1:exon:25262;Parent=Msa0706080-mRNA-1 |
| chr4_4 | exon | 78981632 | 78981701 | 78981632 | ID=Msa0706080-mRNA-1:exon:25263;Parent=Msa0706080-mRNA-1 |
| chr4_4 | exon | 78981784 | 78981933 | 78981784 | ID=Msa0706080-mRNA-1:exon:25264;Parent=Msa0706080-mRNA-1 |
| chr4_4 | exon | 78982031 | 78982320 | 78982031 | ID=Msa0706080-mRNA-1:exon:25265;Parent=Msa0706080-mRNA-1 |
| chr4_4 | exon | 78982539 | 78982680 | 78982539 | ID=Msa0706080-mRNA-1:exon:25266;Parent=Msa0706080-mRNA-1 |
| chr4_4 | exon | 78982840 | 78983010 | 78982840 | ID=Msa0706080-mRNA-1:exon:25267;Parent=Msa0706080-mRNA-1 |
| chr4_4 | exon | 78983536 | 78984032 | 78983536 | ID=Msa0706080-mRNA-1:exon:25268;Parent=Msa0706080-mRNA-1 |
| chr4_4 | five_prime_UTR | 78980757 | 78980853 | 78980757 | ID=Msa0706080-mRNA-1:five_prime_utr;Parent=Msa0706080-mRNA-1 |
| chr4_4 | CDS | 78980854 | 78981121 | 78980854 | ID=Msa0706080-mRNA-1:cds;Parent=Msa0706080-mRNA-1 |
| chr4_4 | CDS | 78981334 | 78981469 | 78981334 | ID=Msa0706080-mRNA-1:cds;Parent=Msa0706080-mRNA-1 |
| chr4_4 | CDS | 78981632 | 78981701 | 78981632 | ID=Msa0706080-mRNA-1:cds;Parent=Msa0706080-mRNA-1 |
| chr4_4 | CDS | 78981784 | 78981933 | 78981784 | ID=Msa0706080-mRNA-1:cds;Parent=Msa0706080-mRNA-1 |
| chr4_4 | CDS | 78982031 | 78982320 | 78982031 | ID=Msa0706080-mRNA-1:cds;Parent=Msa0706080-mRNA-1 |
| chr4_4 | CDS | 78982539 | 78982680 | 78982539 | ID=Msa0706080-mRNA-1:cds;Parent=Msa0706080-mRNA-1 |
| chr4_4 | CDS | 78982840 | 78983010 | 78982840 | ID=Msa0706080-mRNA-1:cds;Parent=Msa0706080-mRNA-1 |
| chr4_4 | CDS | 78983536 | 78983727 | 78983536 | ID=Msa0706080-mRNA-1:cds;Parent=Msa0706080-mRNA-1 |
| chr4_4 | three_prime_UTR | 78983728 | 78984032 | 78983728 | ID=Msa0706080-mRNA-1:three_prime_utr;Parent=Msa0706080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
