Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662010 | XP_003622943.1 | 86.432 | 199 | 15 | 1 | 1 | 199 | 1 | 187 | 2.05e-121 | 352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662010 | sp|P47192|VA722_ARATH | 66.332 | 199 | 55 | 1 | 1 | 199 | 1 | 187 | 7.17e-93 | 273 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662010 | G7L1A5 | 86.432 | 199 | 15 | 1 | 1 | 199 | 1 | 187 | 9.78e-122 | 352 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002300 | Msa0662010 | 0.965099 | 3.622913e-124 | -8.615850e-47 |
| Msa0662010 | Msa0662040 | 0.919476 | 4.291935e-87 | -8.615850e-47 |
| Msa0662010 | Msa1030210 | 0.829151 | 6.043646e-55 | -8.615850e-47 |
| Msa0662010 | Msa1069250 | 0.805662 | 1.198267e-49 | -8.615850e-47 |
| Msa0662010 | Msa1102210 | 0.821124 | 4.769745e-53 | -8.615850e-47 |
| Msa0662010 | Msa1105360 | 0.942632 | 5.089572e-102 | -8.615850e-47 |
| Msa0662010 | Msa1105390 | 0.895871 | 6.347858e-76 | -8.615850e-47 |
| Msa0662010 | Msa1413800 | 0.800266 | 1.562576e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662010 | MtrunA17_Chr7g0237521 | 86.432 | 199 | 15 | 1 | 1 | 199 | 1 | 187 | 1.88e-125 | 352 |
| Msa0662010 | MtrunA17_Chr4g0010271 | 68.844 | 199 | 50 | 1 | 1 | 199 | 1 | 187 | 4.16e-98 | 283 |
| Msa0662010 | MtrunA17_Chr1g0169861 | 62.814 | 199 | 62 | 1 | 1 | 199 | 51 | 237 | 7.12e-92 | 270 |
| Msa0662010 | MtrunA17_Chr7g0237561 | 64.824 | 199 | 58 | 1 | 1 | 199 | 1 | 187 | 3.08e-91 | 266 |
| Msa0662010 | MtrunA17_Chr4g0043521 | 60.406 | 197 | 66 | 1 | 3 | 199 | 5 | 189 | 8.62e-87 | 254 |
| Msa0662010 | MtrunA17_Chr2g0291651 | 60.406 | 197 | 66 | 1 | 3 | 199 | 7 | 191 | 7.00e-85 | 250 |
| Msa0662010 | MtrunA17_Chr2g0296021 | 59.799 | 199 | 68 | 1 | 1 | 199 | 1 | 187 | 3.20e-84 | 248 |
| Msa0662010 | MtrunA17_Chr1g0210521 | 47.248 | 218 | 84 | 3 | 1 | 199 | 1 | 206 | 5.66e-68 | 207 |
| Msa0662010 | MtrunA17_Chr1g0169851 | 54.483 | 145 | 51 | 1 | 70 | 199 | 9 | 153 | 5.42e-53 | 167 |
| Msa0662010 | MtrunA17_Chr4g0010211 | 70.093 | 107 | 32 | 0 | 76 | 182 | 3 | 109 | 2.71e-51 | 160 |
| Msa0662010 | MtrunA17_Chr4g0026121 | 30.612 | 196 | 121 | 4 | 5 | 199 | 2 | 183 | 3.65e-29 | 107 |
| Msa0662010 | MtrunA17_Chr5g0441741 | 34.375 | 192 | 111 | 4 | 6 | 196 | 3 | 180 | 5.58e-29 | 107 |
| Msa0662010 | MtrunA17_Chr4g0064371 | 30.769 | 195 | 124 | 6 | 6 | 199 | 3 | 187 | 1.03e-21 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662010 | AT2G33120.2 | 66.834 | 199 | 62 | 2 | 1 | 199 | 1 | 195 | 1.49e-95 | 278 |
| Msa0662010 | AT2G33120.1 | 66.332 | 199 | 55 | 1 | 1 | 199 | 1 | 187 | 7.29e-94 | 273 |
| Msa0662010 | AT1G04750.1 | 65.829 | 199 | 56 | 1 | 1 | 199 | 1 | 187 | 1.58e-93 | 272 |
| Msa0662010 | AT1G04760.2 | 63.317 | 199 | 61 | 1 | 1 | 199 | 1 | 187 | 5.31e-92 | 268 |
| Msa0662010 | AT1G04760.1 | 63.317 | 199 | 61 | 1 | 1 | 199 | 1 | 187 | 5.31e-92 | 268 |
| Msa0662010 | AT2G32670.1 | 63.819 | 199 | 60 | 1 | 1 | 199 | 66 | 252 | 3.05e-91 | 269 |
| Msa0662010 | AT4G15780.1 | 58.247 | 194 | 68 | 2 | 1 | 193 | 1 | 182 | 1.20e-78 | 233 |
| Msa0662010 | AT2G33110.1 | 54.040 | 198 | 75 | 2 | 1 | 198 | 1 | 182 | 6.73e-69 | 209 |
| Msa0662010 | AT3G54300.3 | 47.273 | 220 | 81 | 3 | 1 | 199 | 1 | 206 | 2.38e-68 | 209 |
| Msa0662010 | AT3G54300.2 | 47.273 | 220 | 81 | 3 | 1 | 199 | 1 | 206 | 2.38e-68 | 209 |
| Msa0662010 | AT3G54300.1 | 47.273 | 220 | 81 | 3 | 1 | 199 | 1 | 206 | 2.38e-68 | 209 |
| Msa0662010 | AT2G33110.2 | 58.046 | 174 | 61 | 1 | 1 | 174 | 1 | 162 | 4.88e-68 | 206 |
| Msa0662010 | AT1G04750.2 | 66.972 | 109 | 36 | 0 | 91 | 199 | 1 | 109 | 4.58e-49 | 156 |
| Msa0662010 | AT1G04750.4 | 66.972 | 109 | 36 | 0 | 91 | 199 | 1 | 109 | 4.58e-49 | 156 |
| Msa0662010 | AT1G04750.3 | 66.972 | 109 | 36 | 0 | 91 | 199 | 1 | 109 | 4.58e-49 | 156 |
| Msa0662010 | AT5G11150.1 | 32.487 | 197 | 117 | 4 | 5 | 199 | 2 | 184 | 3.06e-29 | 108 |
| Msa0662010 | AT5G11150.2 | 32.487 | 197 | 117 | 4 | 5 | 199 | 2 | 184 | 5.33e-29 | 108 |
| Msa0662010 | AT5G22360.1 | 31.472 | 197 | 119 | 5 | 5 | 199 | 2 | 184 | 1.58e-28 | 106 |
| Msa0662010 | AT4G32150.1 | 31.606 | 193 | 117 | 4 | 5 | 196 | 2 | 180 | 8.68e-26 | 99.8 |
| Msa0662010 | AT2G25340.1 | 30.851 | 188 | 115 | 4 | 5 | 191 | 2 | 175 | 2.93e-24 | 95.5 |
| Msa0662010 | AT2G33120.3 | 61.111 | 54 | 21 | 0 | 146 | 199 | 52 | 105 | 8.10e-14 | 66.2 |
Find 35 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGCTTGAACAAAGAATT+TGG | 0.149954 | 4_3:-73820227 | Msa0662010:CDS |
| GGCTATTTCAGCGAAGTTTC+CGG | 0.268195 | 4_3:+73820711 | None:intergenic |
| TGGTTTCTGGGAGTCTTTGC+AGG | 0.286531 | 4_3:+73820680 | None:intergenic |
| AGCAAACTTGCGAAAGTAAA+AGG | 0.308160 | 4_3:-73820050 | Msa0662010:CDS |
| GGCGCGTGGCACGGTGATTC+TGG | 0.320729 | 4_3:-73820752 | Msa0662010:CDS |
| GCAAGTTTGCTAACCTCCTC+TGG | 0.389910 | 4_3:+73820062 | None:intergenic |
| TCCGGTGAAGTTGGTGTGCT+CGG | 0.407070 | 4_3:+73820729 | None:intergenic |
| AACTGACAACCTTCGTGATC+AGG | 0.429765 | 4_3:-73819582 | Msa0662010:intron |
| AAAGCTTGAACAAAGAATTT+GGG | 0.431429 | 4_3:-73820226 | Msa0662010:intron |
| ATCACTTATATACAGCTTTG+TGG | 0.443785 | 4_3:-73820773 | Msa0662010:CDS |
| CTCCTTGATGCGATCAAGAA+AGG | 0.482399 | 4_3:+73820298 | None:intergenic |
| CAGCTTTGTGGCGCGTGGCA+CGG | 0.506415 | 4_3:-73820761 | Msa0662010:CDS |
| GCCGAGCACACCAACTTCAC+CGG | 0.518367 | 4_3:-73820730 | Msa0662010:CDS |
| AGCGAAGTTTCCGGTGAAGT+TGG | 0.520827 | 4_3:+73820720 | None:intergenic |
| TCAAGTTCTAGATGTTATGT+TGG | 0.523120 | 4_3:-73820018 | Msa0662010:CDS |
| GGCCTTTCTTGATCGCATCA+AGG | 0.526618 | 4_3:-73820300 | Msa0662010:CDS |
| AGCTTACTGCGTTGTTGCTG+TGG | 0.527710 | 4_3:-73820348 | Msa0662010:CDS |
| TTCAACTACCTCGCCCATGA+TGG | 0.533919 | 4_3:-73820622 | Msa0662010:CDS |
| GTTAAGTACTGAATCCATCA+TGG | 0.534501 | 4_3:+73820608 | None:intergenic |
| ATCATGGGCGAGGTAGTTGA+AGG | 0.542753 | 4_3:+73820624 | None:intergenic |
| ACTTGCGAAAGTAAAAGGTC+AGG | 0.568866 | 4_3:-73820045 | Msa0662010:CDS |
| GAGTCTTTGCAGGCATTGCA+AGG | 0.572287 | 4_3:+73820690 | None:intergenic |
| TACTGAATCCATCATGGGCG+AGG | 0.576277 | 4_3:+73820614 | None:intergenic |
| ACATGATCGTCATATTGCTA+TGG | 0.577485 | 4_3:-73820378 | Msa0662010:CDS |
| ATATACAGCTTTGTGGCGCG+TGG | 0.589934 | 4_3:-73820766 | Msa0662010:CDS |
| ATGGTTTAGACCGAAAATGA+AGG | 0.599090 | 4_3:-73820111 | Msa0662010:intron |
| TTAAGTACTGAATCCATCAT+GGG | 0.623193 | 4_3:+73820609 | None:intergenic |
| GTAGTTGAAGGTATGACCAT+CGG | 0.631667 | 4_3:+73820636 | None:intergenic |
| CTTTCTTGATCGCATCAAGG+AGG | 0.649404 | 4_3:-73820297 | Msa0662010:CDS |
| AAATTCACTTACAACACCGA+TGG | 0.653817 | 4_3:-73820652 | Msa0662010:CDS |
| ATATTGTGTGGAACATCCAG+AGG | 0.668552 | 4_3:-73820078 | Msa0662010:CDS |
| TTTACCAAAAGATATGCTGG+AGG | 0.669628 | 4_3:-73820272 | Msa0662010:CDS |
| GGAGCATATGCAATATTGTG+TGG | 0.672159 | 4_3:-73820090 | Msa0662010:CDS |
| TTGTGTGGAACATCCAGAGG+AGG | 0.672407 | 4_3:-73820075 | Msa0662010:CDS |
| ATAAAAGGACCTGATCACGA+AGG | 0.753478 | 4_3:+73819573 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAATTATAGGAATTAT+GGG | + | chr4_3:73820269-73820288 | None:intergenic | 10.0% |
| !!! | ATTTTAATTATAGGAATTAT+GGG | + | chr4_3:73820269-73820288 | None:intergenic | 10.0% |
| !!! | TGAAGTTTTTTTATTGTATA+TGG | - | chr4_3:73819934-73819953 | Msa0662010:intron | 15.0% |
| !!! | GATTTTAATTATAGGAATTA+TGG | + | chr4_3:73820270-73820289 | None:intergenic | 15.0% |
| !!! | ACTGTTATGATTTTAATTAT+AGG | + | chr4_3:73820278-73820297 | None:intergenic | 15.0% |
| !!! | AATTTTCTCTTTTAATCTAA+CGG | + | chr4_3:73820406-73820425 | None:intergenic | 15.0% |
| !!! | ATTTTATTTGTTTTATATGC+AGG | - | chr4_3:73820423-73820442 | Msa0662010:intron | 15.0% |
| !! | TTTATGTATGAACAAATAAA+AGG | + | chr4_3:73820513-73820532 | None:intergenic | 15.0% |
| !! | TTATATTATATATGGTTACT+AGG | + | chr4_3:73820648-73820667 | None:intergenic | 15.0% |
| !!! | TGAAGTTTTTTTATTGTATA+TGG | - | chr4_3:73819934-73819953 | Msa0662010:intron | 15.0% |
| !!! | GATTTTAATTATAGGAATTA+TGG | + | chr4_3:73820270-73820289 | None:intergenic | 15.0% |
| !!! | ACTGTTATGATTTTAATTAT+AGG | + | chr4_3:73820278-73820297 | None:intergenic | 15.0% |
| !!! | AATTTTCTCTTTTAATCTAA+CGG | + | chr4_3:73820406-73820425 | None:intergenic | 15.0% |
| !!! | ATTTTATTTGTTTTATATGC+AGG | - | chr4_3:73820423-73820442 | Msa0662010:intron | 15.0% |
| !! | TTTATGTATGAACAAATAAA+AGG | + | chr4_3:73820513-73820532 | None:intergenic | 15.0% |
| !! | TTATATTATATATGGTTACT+AGG | + | chr4_3:73820648-73820667 | None:intergenic | 15.0% |
| !! | ATGTGAATATGTAATATAAG+AGG | - | chr4_3:73819538-73819557 | Msa0662010:intron | 20.0% |
| !!! | GTTTTTTTATTGTATATGGA+TGG | - | chr4_3:73819938-73819957 | Msa0662010:intron | 20.0% |
| !! | TATGAGTTTCTTGTATTTAA+AGG | + | chr4_3:73820181-73820200 | None:intergenic | 20.0% |
| !! | ATGCAATAAACTCTAATAAT+AGG | - | chr4_3:73820313-73820332 | Msa0662010:CDS | 20.0% |
| !! | TTATAGTTATGTAACTGATA+TGG | - | chr4_3:73820717-73820736 | Msa0662010:CDS | 20.0% |
| !! | ATGTGAATATGTAATATAAG+AGG | - | chr4_3:73819538-73819557 | Msa0662010:intron | 20.0% |
| !!! | GTTTTTTTATTGTATATGGA+TGG | - | chr4_3:73819938-73819957 | Msa0662010:intron | 20.0% |
| !! | TATGAGTTTCTTGTATTTAA+AGG | + | chr4_3:73820181-73820200 | None:intergenic | 20.0% |
| !! | ATGCAATAAACTCTAATAAT+AGG | - | chr4_3:73820313-73820332 | Msa0662010:CDS | 20.0% |
| !! | TTATAGTTATGTAACTGATA+TGG | - | chr4_3:73820717-73820736 | Msa0662010:CDS | 20.0% |
| ! | CAAATCATAAATTTCCTTAG+AGG | + | chr4_3:73819617-73819636 | None:intergenic | 25.0% |
| ! | AAAAGCTTGAACAAAGAATT+TGG | - | chr4_3:73819841-73819860 | Msa0662010:intron | 25.0% |
| ! | AAAGCTTGAACAAAGAATTT+GGG | - | chr4_3:73819842-73819861 | Msa0662010:intron | 25.0% |
| !!! | TATGTTGGAAAATTTTGATC+AGG | - | chr4_3:73820065-73820084 | Msa0662010:CDS | 25.0% |
| ! | TGTATTTAAAGGTTGTTAGA+AGG | + | chr4_3:73820170-73820189 | None:intergenic | 25.0% |
| ! | TTGGTCTGTTACAAATTTAT+AGG | + | chr4_3:73820230-73820249 | None:intergenic | 25.0% |
| ! | TTAATTATAGGAATTATGGG+AGG | + | chr4_3:73820266-73820285 | None:intergenic | 25.0% |
| ! | TCAACAGTATATGTCTAAAT+TGG | - | chr4_3:73820351-73820370 | Msa0662010:CDS | 25.0% |
| ! | ACATAAACTTTGTGTTCATT+TGG | - | chr4_3:73820526-73820545 | Msa0662010:intron | 25.0% |
| ! | ATGTGAGTCATTTATTTCAA+AGG | + | chr4_3:73820598-73820617 | None:intergenic | 25.0% |
| !! | TTTGAAATAAATGACTCACA+TGG | - | chr4_3:73820597-73820616 | Msa0662010:intron | 25.0% |
| ! | ATTATATATGGTTACTAGGA+TGG | + | chr4_3:73820644-73820663 | None:intergenic | 25.0% |
| ! | TAACTGATATGGTTTGAATA+TGG | - | chr4_3:73820728-73820747 | Msa0662010:CDS | 25.0% |
| ! | CAAATCATAAATTTCCTTAG+AGG | + | chr4_3:73819617-73819636 | None:intergenic | 25.0% |
| ! | AAAAGCTTGAACAAAGAATT+TGG | - | chr4_3:73819841-73819860 | Msa0662010:intron | 25.0% |
| ! | AAAGCTTGAACAAAGAATTT+GGG | - | chr4_3:73819842-73819861 | Msa0662010:intron | 25.0% |
| !!! | TATGTTGGAAAATTTTGATC+AGG | - | chr4_3:73820065-73820084 | Msa0662010:CDS | 25.0% |
| ! | TGTATTTAAAGGTTGTTAGA+AGG | + | chr4_3:73820170-73820189 | None:intergenic | 25.0% |
| ! | TTGGTCTGTTACAAATTTAT+AGG | + | chr4_3:73820230-73820249 | None:intergenic | 25.0% |
| ! | TTAATTATAGGAATTATGGG+AGG | + | chr4_3:73820266-73820285 | None:intergenic | 25.0% |
| ! | TCAACAGTATATGTCTAAAT+TGG | - | chr4_3:73820351-73820370 | Msa0662010:CDS | 25.0% |
| ! | ACATAAACTTTGTGTTCATT+TGG | - | chr4_3:73820526-73820545 | Msa0662010:intron | 25.0% |
| ! | ATGTGAGTCATTTATTTCAA+AGG | + | chr4_3:73820598-73820617 | None:intergenic | 25.0% |
| !! | TTTGAAATAAATGACTCACA+TGG | - | chr4_3:73820597-73820616 | Msa0662010:intron | 25.0% |
| ! | ATTATATATGGTTACTAGGA+TGG | + | chr4_3:73820644-73820663 | None:intergenic | 25.0% |
| ! | TAACTGATATGGTTTGAATA+TGG | - | chr4_3:73820728-73820747 | Msa0662010:CDS | 25.0% |
| ATCACTTATATACAGCTTTG+TGG | - | chr4_3:73819295-73819314 | Msa0662010:CDS | 30.0% | |
| !!! | TGAATTTTGTGTTGGTTTCT+GGG | + | chr4_3:73819403-73819422 | None:intergenic | 30.0% |
| ! | GTTGTAAGTGAATTTTGTGT+TGG | + | chr4_3:73819411-73819430 | None:intergenic | 30.0% |
| !! | TTAAGTACTGAATCCATCAT+GGG | + | chr4_3:73819462-73819481 | None:intergenic | 30.0% |
| ! | TTTTGATCGCAATATTGCTA+TGG | - | chr4_3:73819747-73819766 | Msa0662010:intron | 30.0% |
| ! | GATTTTACCAAAAGATATGC+TGG | - | chr4_3:73819793-73819812 | Msa0662010:intron | 30.0% |
| !! | TCAAGTTCTAGATGTTATGT+TGG | - | chr4_3:73820050-73820069 | Msa0662010:CDS | 30.0% |
| TTGATCAGGTATGTATATGT+TGG | - | chr4_3:73820079-73820098 | Msa0662010:CDS | 30.0% | |
| ATCATAACAGTCATAACCAT+AGG | - | chr4_3:73820287-73820306 | Msa0662010:CDS | 30.0% | |
| GAGTTTATTGCATATTCCTA+TGG | + | chr4_3:73820306-73820325 | None:intergenic | 30.0% | |
| GACATATACTGTTGAGAATA+TGG | + | chr4_3:73820346-73820365 | None:intergenic | 30.0% | |
| ATCACTTATATACAGCTTTG+TGG | - | chr4_3:73819295-73819314 | Msa0662010:CDS | 30.0% | |
| !!! | TGAATTTTGTGTTGGTTTCT+GGG | + | chr4_3:73819403-73819422 | None:intergenic | 30.0% |
| ! | GTTGTAAGTGAATTTTGTGT+TGG | + | chr4_3:73819411-73819430 | None:intergenic | 30.0% |
| !! | TTAAGTACTGAATCCATCAT+GGG | + | chr4_3:73819462-73819481 | None:intergenic | 30.0% |
| ! | TTTTGATCGCAATATTGCTA+TGG | - | chr4_3:73819747-73819766 | Msa0662010:intron | 30.0% |
| ! | GATTTTACCAAAAGATATGC+TGG | - | chr4_3:73819793-73819812 | Msa0662010:intron | 30.0% |
| !! | TCAAGTTCTAGATGTTATGT+TGG | - | chr4_3:73820050-73820069 | Msa0662010:CDS | 30.0% |
| TTGATCAGGTATGTATATGT+TGG | - | chr4_3:73820079-73820098 | Msa0662010:CDS | 30.0% | |
| ATCATAACAGTCATAACCAT+AGG | - | chr4_3:73820287-73820306 | Msa0662010:CDS | 30.0% | |
| GAGTTTATTGCATATTCCTA+TGG | + | chr4_3:73820306-73820325 | None:intergenic | 30.0% | |
| GACATATACTGTTGAGAATA+TGG | + | chr4_3:73820346-73820365 | None:intergenic | 30.0% | |
| !!! | GTGAATTTTGTGTTGGTTTC+TGG | + | chr4_3:73819404-73819423 | None:intergenic | 35.0% |
| AAATTCACTTACAACACCGA+TGG | - | chr4_3:73819416-73819435 | Msa0662010:intron | 35.0% | |
| !! | GTTAAGTACTGAATCCATCA+TGG | + | chr4_3:73819463-73819482 | None:intergenic | 35.0% |
| CTAGAATGCATTTGCATGTA+CGG | - | chr4_3:73819569-73819588 | Msa0662010:intron | 35.0% | |
| TAGAATGCATTTGCATGTAC+GGG | - | chr4_3:73819570-73819589 | Msa0662010:intron | 35.0% | |
| ACATGATCGTCATATTGCTA+TGG | - | chr4_3:73819690-73819709 | Msa0662010:intron | 35.0% | |
| TTTACCAAAAGATATGCTGG+AGG | - | chr4_3:73819796-73819815 | Msa0662010:intron | 35.0% | |
| ! | TTTTCCTCCAGCATATCTTT+TGG | + | chr4_3:73819803-73819822 | None:intergenic | 35.0% |
| ATGGTTTAGACCGAAAATGA+AGG | - | chr4_3:73819957-73819976 | Msa0662010:intron | 35.0% | |
| ! | TGCATATGCTCCTTCATTTT+CGG | + | chr4_3:73819970-73819989 | None:intergenic | 35.0% |
| AGCAAACTTGCGAAAGTAAA+AGG | - | chr4_3:73820018-73820037 | Msa0662010:CDS | 35.0% | |
| GGGAGGTTACAAATTTATGT+TGG | + | chr4_3:73820249-73820268 | None:intergenic | 35.0% | |
| TATGTCTAAATTGGATCCTC+TGG | - | chr4_3:73820360-73820379 | Msa0662010:CDS | 35.0% | |
| !!! | GTGAATTTTGTGTTGGTTTC+TGG | + | chr4_3:73819404-73819423 | None:intergenic | 35.0% |
| AAATTCACTTACAACACCGA+TGG | - | chr4_3:73819416-73819435 | Msa0662010:intron | 35.0% | |
| !! | GTTAAGTACTGAATCCATCA+TGG | + | chr4_3:73819463-73819482 | None:intergenic | 35.0% |
| CTAGAATGCATTTGCATGTA+CGG | - | chr4_3:73819569-73819588 | Msa0662010:intron | 35.0% | |
| TAGAATGCATTTGCATGTAC+GGG | - | chr4_3:73819570-73819589 | Msa0662010:intron | 35.0% | |
| ACATGATCGTCATATTGCTA+TGG | - | chr4_3:73819690-73819709 | Msa0662010:intron | 35.0% | |
| TTTACCAAAAGATATGCTGG+AGG | - | chr4_3:73819796-73819815 | Msa0662010:intron | 35.0% | |
| ! | TTTTCCTCCAGCATATCTTT+TGG | + | chr4_3:73819803-73819822 | None:intergenic | 35.0% |
| ATGGTTTAGACCGAAAATGA+AGG | - | chr4_3:73819957-73819976 | Msa0662010:intron | 35.0% | |
| ! | TGCATATGCTCCTTCATTTT+CGG | + | chr4_3:73819970-73819989 | None:intergenic | 35.0% |
| AGCAAACTTGCGAAAGTAAA+AGG | - | chr4_3:73820018-73820037 | Msa0662010:CDS | 35.0% | |
| GGGAGGTTACAAATTTATGT+TGG | + | chr4_3:73820249-73820268 | None:intergenic | 35.0% | |
| TATGTCTAAATTGGATCCTC+TGG | - | chr4_3:73820360-73820379 | Msa0662010:CDS | 35.0% | |
| ! | GTAGTTGAAGGTATGACCAT+CGG | + | chr4_3:73819435-73819454 | None:intergenic | 40.0% |
| GGAGCATATGCAATATTGTG+TGG | - | chr4_3:73819978-73819997 | Msa0662010:intron | 40.0% | |
| ATATTGTGTGGAACATCCAG+AGG | - | chr4_3:73819990-73820009 | Msa0662010:intron | 40.0% | |
| ACTTGCGAAAGTAAAAGGTC+AGG | - | chr4_3:73820023-73820042 | Msa0662010:CDS | 40.0% | |
| ! | AGTGAAGATCGACGTTTTGA+TGG | - | chr4_3:73820459-73820478 | Msa0662010:intron | 40.0% |
| ATAAAAGGACCTGATCACGA+AGG | + | chr4_3:73820498-73820517 | None:intergenic | 40.0% | |
| ! | TGGTTTGAATATGGCTTTGC+AGG | - | chr4_3:73820737-73820756 | Msa0662010:CDS | 40.0% |
| ! | TTTGCAGGCACAAGTTTTCA+GGG | - | chr4_3:73820752-73820771 | Msa0662010:CDS | 40.0% |
| ! | GTAGTTGAAGGTATGACCAT+CGG | + | chr4_3:73819435-73819454 | None:intergenic | 40.0% |
| GGAGCATATGCAATATTGTG+TGG | - | chr4_3:73819978-73819997 | Msa0662010:intron | 40.0% | |
| ATATTGTGTGGAACATCCAG+AGG | - | chr4_3:73819990-73820009 | Msa0662010:intron | 40.0% | |
| ACTTGCGAAAGTAAAAGGTC+AGG | - | chr4_3:73820023-73820042 | Msa0662010:CDS | 40.0% | |
| ! | AGTGAAGATCGACGTTTTGA+TGG | - | chr4_3:73820459-73820478 | Msa0662010:intron | 40.0% |
| ATAAAAGGACCTGATCACGA+AGG | + | chr4_3:73820498-73820517 | None:intergenic | 40.0% | |
| ! | TGGTTTGAATATGGCTTTGC+AGG | - | chr4_3:73820737-73820756 | Msa0662010:CDS | 40.0% |
| ! | TTTGCAGGCACAAGTTTTCA+GGG | - | chr4_3:73820752-73820771 | Msa0662010:CDS | 40.0% |
| ! | GGCTATTTCAGCGAAGTTTC+CGG | + | chr4_3:73819360-73819379 | None:intergenic | 45.0% |
| TGCATGTACGGGTTTCATGT+CGG | - | chr4_3:73819581-73819600 | Msa0662010:intron | 45.0% | |
| TCGGACATTGAACACCTCTA+AGG | - | chr4_3:73819600-73819619 | Msa0662010:CDS | 45.0% | |
| CTCCTTGATGCGATCAAGAA+AGG | + | chr4_3:73819773-73819792 | None:intergenic | 45.0% | |
| CTTTCTTGATCGCATCAAGG+AGG | - | chr4_3:73819771-73819790 | Msa0662010:intron | 45.0% | |
| AACGGTCTGCACTTCAAACT+TGG | + | chr4_3:73820388-73820407 | None:intergenic | 45.0% | |
| AACTGACAACCTTCGTGATC+AGG | - | chr4_3:73820486-73820505 | Msa0662010:intron | 45.0% | |
| ! | CTTTGCAGGCACAAGTTTTC+AGG | - | chr4_3:73820751-73820770 | Msa0662010:CDS | 45.0% |
| ! | TTGCAGGCACAAGTTTTCAG+GGG | - | chr4_3:73820753-73820772 | Msa0662010:CDS | 45.0% |
| ! | GGCTATTTCAGCGAAGTTTC+CGG | + | chr4_3:73819360-73819379 | None:intergenic | 45.0% |
| TGCATGTACGGGTTTCATGT+CGG | - | chr4_3:73819581-73819600 | Msa0662010:intron | 45.0% | |
| TCGGACATTGAACACCTCTA+AGG | - | chr4_3:73819600-73819619 | Msa0662010:CDS | 45.0% | |
| CTCCTTGATGCGATCAAGAA+AGG | + | chr4_3:73819773-73819792 | None:intergenic | 45.0% | |
| CTTTCTTGATCGCATCAAGG+AGG | - | chr4_3:73819771-73819790 | Msa0662010:intron | 45.0% | |
| AACGGTCTGCACTTCAAACT+TGG | + | chr4_3:73820388-73820407 | None:intergenic | 45.0% | |
| AACTGACAACCTTCGTGATC+AGG | - | chr4_3:73820486-73820505 | Msa0662010:intron | 45.0% | |
| ! | CTTTGCAGGCACAAGTTTTC+AGG | - | chr4_3:73820751-73820770 | Msa0662010:CDS | 45.0% |
| ! | TTGCAGGCACAAGTTTTCAG+GGG | - | chr4_3:73820753-73820772 | Msa0662010:CDS | 45.0% |
| !! | TAATTTAGTTATATTATATA+TGG | + | chr4_3:73820656-73820675 | None:intergenic | 5.0% |
| !! | TAATTTAGTTATATTATATA+TGG | + | chr4_3:73820656-73820675 | None:intergenic | 5.0% |
| ! | ATATACAGCTTTGTGGCGCG+TGG | - | chr4_3:73819302-73819321 | Msa0662010:CDS | 50.0% |
| AGCGAAGTTTCCGGTGAAGT+TGG | + | chr4_3:73819351-73819370 | None:intergenic | 50.0% | |
| ! | GAGTCTTTGCAGGCATTGCA+AGG | + | chr4_3:73819381-73819400 | None:intergenic | 50.0% |
| ! | TGGTTTCTGGGAGTCTTTGC+AGG | + | chr4_3:73819391-73819410 | None:intergenic | 50.0% |
| ATCATGGGCGAGGTAGTTGA+AGG | + | chr4_3:73819447-73819466 | None:intergenic | 50.0% | |
| TTCAACTACCTCGCCCATGA+TGG | - | chr4_3:73819446-73819465 | Msa0662010:intron | 50.0% | |
| TACTGAATCCATCATGGGCG+AGG | + | chr4_3:73819457-73819476 | None:intergenic | 50.0% | |
| AGCTTACTGCGTTGTTGCTG+TGG | - | chr4_3:73819720-73819739 | Msa0662010:intron | 50.0% | |
| GGCCTTTCTTGATCGCATCA+AGG | - | chr4_3:73819768-73819787 | Msa0662010:intron | 50.0% | |
| TTGTGTGGAACATCCAGAGG+AGG | - | chr4_3:73819993-73820012 | Msa0662010:intron | 50.0% | |
| !! | GCAAGTTTGCTAACCTCCTC+TGG | + | chr4_3:73820009-73820028 | None:intergenic | 50.0% |
| CACTTCAAACTTGGCTCCAG+AGG | + | chr4_3:73820379-73820398 | None:intergenic | 50.0% | |
| !! | TGCAGGCACAAGTTTTCAGG+GGG | - | chr4_3:73820754-73820773 | Msa0662010:CDS | 50.0% |
| ! | ATATACAGCTTTGTGGCGCG+TGG | - | chr4_3:73819302-73819321 | Msa0662010:CDS | 50.0% |
| AGCGAAGTTTCCGGTGAAGT+TGG | + | chr4_3:73819351-73819370 | None:intergenic | 50.0% | |
| ! | GAGTCTTTGCAGGCATTGCA+AGG | + | chr4_3:73819381-73819400 | None:intergenic | 50.0% |
| ! | TGGTTTCTGGGAGTCTTTGC+AGG | + | chr4_3:73819391-73819410 | None:intergenic | 50.0% |
| ATCATGGGCGAGGTAGTTGA+AGG | + | chr4_3:73819447-73819466 | None:intergenic | 50.0% | |
| TTCAACTACCTCGCCCATGA+TGG | - | chr4_3:73819446-73819465 | Msa0662010:intron | 50.0% | |
| TACTGAATCCATCATGGGCG+AGG | + | chr4_3:73819457-73819476 | None:intergenic | 50.0% | |
| AGCTTACTGCGTTGTTGCTG+TGG | - | chr4_3:73819720-73819739 | Msa0662010:intron | 50.0% | |
| GGCCTTTCTTGATCGCATCA+AGG | - | chr4_3:73819768-73819787 | Msa0662010:intron | 50.0% | |
| TTGTGTGGAACATCCAGAGG+AGG | - | chr4_3:73819993-73820012 | Msa0662010:intron | 50.0% | |
| !! | GCAAGTTTGCTAACCTCCTC+TGG | + | chr4_3:73820009-73820028 | None:intergenic | 50.0% |
| CACTTCAAACTTGGCTCCAG+AGG | + | chr4_3:73820379-73820398 | None:intergenic | 50.0% | |
| !! | TGCAGGCACAAGTTTTCAGG+GGG | - | chr4_3:73820754-73820773 | Msa0662010:CDS | 50.0% |
| !! | TCCGGTGAAGTTGGTGTGCT+CGG | + | chr4_3:73819342-73819361 | None:intergenic | 55.0% |
| !! | GCACAAGTTTTCAGGGGGCA+GGG | - | chr4_3:73820759-73820778 | Msa0662010:CDS | 55.0% |
| !! | AAGTTTTCAGGGGGCAGGGA+GGG | - | chr4_3:73820763-73820782 | Msa0662010:CDS | 55.0% |
| !! | TCCGGTGAAGTTGGTGTGCT+CGG | + | chr4_3:73819342-73819361 | None:intergenic | 55.0% |
| !! | GCACAAGTTTTCAGGGGGCA+GGG | - | chr4_3:73820759-73820778 | Msa0662010:CDS | 55.0% |
| !! | AAGTTTTCAGGGGGCAGGGA+GGG | - | chr4_3:73820763-73820782 | Msa0662010:CDS | 55.0% |
| GCCGAGCACACCAACTTCAC+CGG | - | chr4_3:73819338-73819357 | Msa0662010:intron | 60.0% | |
| !! | GGCACAAGTTTTCAGGGGGC+AGG | - | chr4_3:73820758-73820777 | Msa0662010:CDS | 60.0% |
| !! | CAAGTTTTCAGGGGGCAGGG+AGG | - | chr4_3:73820762-73820781 | Msa0662010:CDS | 60.0% |
| GCCGAGCACACCAACTTCAC+CGG | - | chr4_3:73819338-73819357 | Msa0662010:intron | 60.0% | |
| !! | GGCACAAGTTTTCAGGGGGC+AGG | - | chr4_3:73820758-73820777 | Msa0662010:CDS | 60.0% |
| !! | CAAGTTTTCAGGGGGCAGGG+AGG | - | chr4_3:73820762-73820781 | Msa0662010:CDS | 60.0% |
| ! | CAGCTTTGTGGCGCGTGGCA+CGG | - | chr4_3:73819307-73819326 | Msa0662010:CDS | 65.0% |
| GGGGGCAGGGAGGGCAATTA+AGG | - | chr4_3:73820772-73820791 | Msa0662010:CDS | 65.0% | |
| ! | CAGCTTTGTGGCGCGTGGCA+CGG | - | chr4_3:73819307-73819326 | Msa0662010:CDS | 65.0% |
| GGGGGCAGGGAGGGCAATTA+AGG | - | chr4_3:73820772-73820791 | Msa0662010:CDS | 65.0% | |
| GGCGCGTGGCACGGTGATTC+TGG | - | chr4_3:73819316-73819335 | Msa0662010:intron | 70.0% | |
| GGCGCGTGGCACGGTGATTC+TGG | - | chr4_3:73819316-73819335 | Msa0662010:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 73819284 | 73820806 | 73819284 | ID=Msa0662010;Name=Msa0662010 |
| chr4_3 | mRNA | 73819284 | 73820806 | 73819284 | ID=Msa0662010-mRNA-1;Parent=Msa0662010;Name=Msa0662010-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0.25|0.2|1|1|1|5|0|199 |
| chr4_3 | exon | 73820617 | 73820806 | 73820617 | ID=Msa0662010-mRNA-1:exon:22263;Parent=Msa0662010-mRNA-1 |
| chr4_3 | exon | 73820227 | 73820404 | 73820227 | ID=Msa0662010-mRNA-1:exon:22262;Parent=Msa0662010-mRNA-1 |
| chr4_3 | exon | 73820004 | 73820124 | 73820004 | ID=Msa0662010-mRNA-1:exon:22261;Parent=Msa0662010-mRNA-1 |
| chr4_3 | exon | 73819583 | 73819645 | 73819583 | ID=Msa0662010-mRNA-1:exon:22260;Parent=Msa0662010-mRNA-1 |
| chr4_3 | exon | 73819284 | 73819331 | 73819284 | ID=Msa0662010-mRNA-1:exon:22259;Parent=Msa0662010-mRNA-1 |
| chr4_3 | CDS | 73820617 | 73820806 | 73820617 | ID=Msa0662010-mRNA-1:cds;Parent=Msa0662010-mRNA-1 |
| chr4_3 | CDS | 73820227 | 73820404 | 73820227 | ID=Msa0662010-mRNA-1:cds;Parent=Msa0662010-mRNA-1 |
| chr4_3 | CDS | 73820004 | 73820124 | 73820004 | ID=Msa0662010-mRNA-1:cds;Parent=Msa0662010-mRNA-1 |
| chr4_3 | CDS | 73819583 | 73819645 | 73819583 | ID=Msa0662010-mRNA-1:cds;Parent=Msa0662010-mRNA-1 |
| chr4_3 | CDS | 73819284 | 73819331 | 73819284 | ID=Msa0662010-mRNA-1:cds;Parent=Msa0662010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
