AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1102210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1102210 MtrunA17_Chr7g0230011 99.307 433 3 0 4 436 11 443 0.0 886
Msa1102210 MtrunA17_Chr6g0458931 84.296 433 68 0 4 436 23 455 0.0 771
Msa1102210 MtrunA17_Chr2g0331721 83.641 434 70 1 4 436 28 461 0.0 735
Msa1102210 MtrunA17_Chr6g0459021 80.841 428 82 0 9 436 20 447 0.0 693
Msa1102210 MtrunA17_Chr6g0459001 74.684 474 79 1 4 436 3 476 0.0 690
Msa1102210 MtrunA17_Chr6g0458921 79.767 430 84 2 8 436 1 428 0.0 673
Msa1102210 MtrunA17_Chr6g0459031 77.674 430 93 2 8 436 1 428 0.0 662
Msa1102210 MtrunA17_Chr8g0376991 67.593 432 140 0 5 436 5 436 0.0 639
Msa1102210 MtrunA17_Chr6g0459011 81.425 393 73 0 39 431 1 393 0.0 630
Msa1102210 MtrunA17_Chr2g0328081 76.815 427 98 1 11 436 2 428 0.0 628
Msa1102210 MtrunA17_Chr3g0122921 68.519 432 118 1 5 436 15 428 0.0 619
Msa1102210 MtrunA17_Chr4g0057851 68.765 413 129 0 22 434 9 421 0.0 618
Msa1102210 MtrunA17_Chr5g0422741 62.963 432 156 1 5 436 12 439 0.0 555
Msa1102210 MtrunA17_Chr1g0198531 61.574 432 162 1 5 436 10 437 0.0 544
Msa1102210 MtrunA17_Chr1g0198541 61.737 426 159 1 11 436 16 437 0.0 539
Msa1102210 MtrunA17_Chr3g0077651 54.060 431 194 2 10 436 39 469 7.14e-167 477
Msa1102210 MtrunA17_Chr3g0143701 37.471 435 258 5 15 436 76 509 8.22e-95 294
Msa1102210 MtrunA17_Chr2g0281341 37.358 439 263 5 8 435 80 517 1.07e-93 291
Msa1102210 MtrunA17_Chr5g0406331 36.758 438 255 6 7 432 70 497 1.24e-92 289
Msa1102210 MtrunA17_Chr4g0038711 34.459 444 274 4 9 435 56 499 1.20e-88 278
Msa1102210 MtrunA17_Chr5g0406351 35.666 443 271 6 7 436 91 532 3.09e-88 278
Msa1102210 MtrunA17_Chr3g0140761 31.209 455 260 11 22 433 32 476 1.44e-59 202
Msa1102210 MtrunA17_Chr4g0027241 30.735 449 283 11 4 436 24 460 1.91e-58 198
Msa1102210 MtrunA17_Chr8g0387941 29.138 429 282 9 23 436 27 448 2.30e-58 197
Msa1102210 MtrunA17_Chr1g0146491 31.317 463 271 13 10 433 12 466 1.80e-55 191
Msa1102210 MtrunA17_Chr1g0198081 30.516 426 275 9 25 436 61 479 5.23e-54 187
Msa1102210 MtrunA17_Chr3g0125091 29.935 461 282 13 4 430 18 471 5.43e-53 184
Msa1102210 MtrunA17_Chr3g0125101 28.696 460 289 10 4 430 18 471 8.78e-52 181
Msa1102210 MtrunA17_Chr1g0206871 28.976 459 268 11 24 433 16 465 4.70e-51 179
Msa1102210 MtrunA17_Chr3g0125081 28.696 460 288 11 4 430 18 470 6.43e-51 179
Msa1102210 MtrunA17_Chr3g0130641 29.792 480 275 13 2 436 12 474 7.19e-50 176
Msa1102210 MtrunA17_Chr3g0103271 28.929 439 270 9 24 426 28 460 4.64e-48 171
Msa1102210 MtrunA17_Chr1g0184721 29.680 438 261 13 23 435 22 437 5.15e-48 170
Msa1102210 MtrunA17_Chr4g0037201 28.850 461 263 13 24 433 60 506 6.68e-48 171
Msa1102210 MtrunA17_Chr3g0130651 29.742 427 250 10 5 400 22 429 5.98e-47 167
Msa1102210 MtrunA17_Chr5g0447221 29.464 448 255 15 24 426 30 461 4.25e-45 162
Msa1102210 MtrunA17_Chr1g0146411 28.675 415 259 12 15 400 28 434 1.60e-44 161
Msa1102210 MtrunA17_Chr1g0159761 28.947 418 251 10 24 402 28 438 1.72e-43 159
Msa1102210 MtrunA17_Chr3g0103231 28.471 425 265 11 9 400 11 429 2.32e-43 158
Msa1102210 MtrunA17_Chr8g0384661 26.667 465 287 10 2 432 43 487 6.77e-43 157
Msa1102210 MtrunA17_Chr1g0146391 27.273 462 282 14 15 436 7 454 5.04e-42 154
Msa1102210 MtrunA17_Chr3g0103211 28.678 401 247 9 34 400 34 429 1.35e-40 150
Msa1102210 MtrunA17_Chr5g0447231 28.442 443 267 14 24 426 26 458 1.68e-40 150
Msa1102210 MtrunA17_Chr3g0140541 25.172 437 290 9 22 425 24 456 1.48e-39 147
Msa1102210 MtrunA17_Chr1g0146331 26.316 475 294 14 4 436 3 463 2.86e-37 141
Msa1102210 MtrunA17_Chr2g0293331 25.968 439 268 12 24 417 13 439 3.12e-37 141
Msa1102210 MtrunA17_Chr3g0103221 26.065 399 260 9 34 400 41 436 9.37e-37 140
Msa1102210 MtrunA17_Chr4g0058161 27.735 393 265 13 51 436 68 448 7.24e-36 137
Msa1102210 MtrunA17_Chr1g0206851 28.090 356 199 11 118 432 35 374 6.44e-35 133
Msa1102210 MtrunA17_Chr1g0206831 30.675 326 174 11 141 431 28 336 9.21e-35 132
Msa1102210 MtrunA17_Chr3g0140531 24.894 470 306 13 5 435 6 467 3.14e-34 133
Msa1102210 MtrunA17_Chr5g0436281 26.531 392 271 12 51 436 1 381 7.10e-28 114
Msa1102210 MtrunA17_Chr3g0103251 27.483 302 165 8 151 400 43 342 7.52e-27 110
Msa1102210 MtrunA17_Chr1g0206821 33.755 237 135 7 24 241 23 256 3.80e-24 104
Msa1102210 MtrunA17_Chr1g0206821 29.596 223 120 5 238 433 313 525 1.34e-23 103
Msa1102210 MtrunA17_Chr3g0112971 26.615 387 241 14 69 436 72 434 1.11e-20 94.0
Msa1102210 MtrunA17_Chr3g0105861 24.601 439 293 15 3 428 17 430 1.29e-20 93.6
Msa1102210 MtrunA17_Chr4g0027261 31.250 192 116 4 254 436 1 185 2.03e-20 88.6
Msa1102210 MtrunA17_Chr8g0361631 23.214 392 263 15 21 399 11 377 1.26e-19 90.5
Msa1102210 MtrunA17_Chr5g0402151 29.391 279 160 7 34 303 11 261 5.61e-19 86.7
Msa1102210 MtrunA17_Chr7g0217401 25.515 388 239 12 22 391 37 392 1.70e-18 87.4
Msa1102210 MtrunA17_Chr7g0217381 25.806 403 246 12 9 390 20 390 4.57e-18 85.9
Msa1102210 MtrunA17_Chr8g0361211 22.025 395 258 12 16 392 51 413 5.14e-17 82.8
Msa1102210 MtrunA17_Chr3g0130661 27.528 178 113 3 275 436 1 178 3.96e-16 76.3
Msa1102210 MtrunA17_Chr7g0239011 22.481 387 261 14 21 394 57 417 9.64e-16 79.0
Msa1102210 MtrunA17_Chr3g0090101 25.266 376 240 12 33 395 2 349 7.08e-15 75.9
Msa1102210 MtrunA17_Chr8g0361641 21.788 358 254 9 47 399 1 337 5.95e-12 67.0
Msa1102210 MtrunA17_Chr3g0130671 28.351 194 114 5 24 201 40 224 5.28e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1102210 AT5G40780.1 83.753 437 69 1 2 436 10 446 0.0 766
Msa1102210 AT1G48640.1 78.621 435 92 1 2 436 20 453 0.0 709
Msa1102210 AT5G40780.3 84.171 398 63 0 39 436 1 398 0.0 701
Msa1102210 AT5G40780.2 84.171 398 63 0 39 436 1 398 0.0 701
Msa1102210 AT1G24400.1 78.689 427 91 0 10 436 15 441 0.0 674
Msa1102210 AT1G67640.1 77.986 427 94 0 10 436 15 441 0.0 654
Msa1102210 AT1G61270.1 64.679 436 150 2 2 433 10 445 0.0 593
Msa1102210 AT3G01760.1 64.302 437 148 4 2 431 7 442 0.0 583
Msa1102210 AT1G25530.1 62.326 430 162 0 7 436 11 440 0.0 539
Msa1102210 AT1G71680.1 58.199 433 180 1 5 436 16 448 1.01e-171 489
Msa1102210 AT1G71680.2 58.908 348 142 1 5 351 16 363 1.83e-142 411
Msa1102210 AT1G47670.1 37.358 439 263 5 8 435 78 515 1.79e-93 291
Msa1102210 AT4G35180.1 33.813 417 255 8 14 416 48 457 3.27e-68 224
Msa1102210 AT1G10010.1 32.688 465 257 13 12 433 18 469 3.64e-60 203
Msa1102210 AT1G10010.2 32.688 465 257 13 12 433 19 470 5.43e-60 203
Msa1102210 AT1G08230.2 30.649 447 289 8 5 436 9 449 1.65e-59 201
Msa1102210 AT5G41800.1 29.508 427 279 9 25 436 28 447 4.25e-58 197
Msa1102210 AT1G58360.1 31.126 453 260 14 22 432 35 477 1.15e-53 186
Msa1102210 AT4G35180.2 36.594 276 165 4 14 284 48 318 2.16e-53 182
Msa1102210 AT5G49630.1 30.989 455 260 13 22 432 31 475 2.94e-48 172
Msa1102210 AT5G09220.1 28.731 449 272 11 24 432 46 486 5.00e-48 171
Msa1102210 AT5G63850.1 29.111 450 269 12 24 432 19 459 2.10e-46 167
Msa1102210 AT1G44100.1 28.478 460 279 12 15 432 22 473 1.43e-45 164
Msa1102210 AT1G77380.1 29.194 459 280 11 11 432 19 469 2.37e-45 164
Msa1102210 AT1G08230.3 30.704 355 227 7 95 436 1 349 6.82e-41 149
Msa1102210 AT5G23810.1 28.538 424 247 12 22 400 24 436 1.80e-38 145
Msa1102210 AT1G08230.4 30.816 331 210 7 119 436 6 330 4.33e-38 141
Msa1102210 AT1G08230.6 30.816 331 210 7 119 436 6 330 4.33e-38 141
Msa1102210 AT1G08230.5 30.816 331 210 7 119 436 6 330 4.33e-38 141
Msa1102210 AT3G55740.1 27.009 448 293 21 5 436 8 437 5.01e-27 112
Msa1102210 AT3G55740.2 27.820 399 257 19 51 436 1 381 1.32e-26 110
Msa1102210 AT3G55740.3 27.820 399 257 19 51 436 1 381 1.32e-26 110
Msa1102210 AT5G23810.2 28.834 326 195 10 22 321 24 338 1.59e-26 110
Msa1102210 AT2G36590.1 25.926 405 282 13 12 408 12 406 3.67e-26 110
Msa1102210 AT2G39890.2 25.566 442 295 17 11 436 17 440 1.51e-25 108
Msa1102210 AT2G39890.1 25.566 442 295 17 11 436 17 440 1.51e-25 108
Msa1102210 AT2G39890.3 26.065 399 264 15 51 436 1 381 1.70e-25 107
Msa1102210 AT5G15240.1 24.318 403 253 12 4 390 17 383 9.97e-21 94.4
Msa1102210 AT2G36590.2 27.010 311 211 12 12 316 12 312 1.15e-16 81.3
Msa1102210 AT5G23810.4 28.099 242 141 8 22 239 24 256 2.65e-15 76.3
Msa1102210 AT5G02170.1 23.274 391 263 12 16 394 125 490 3.77e-14 74.7
Msa1102210 AT5G02170.2 23.822 382 243 11 16 394 125 461 4.29e-14 74.3
Msa1102210 AT3G28960.5 21.447 387 249 12 25 391 15 366 5.54e-14 73.9
Msa1102210 AT3G28960.2 21.447 387 249 12 25 391 15 366 5.54e-14 73.9
Msa1102210 AT3G28960.3 21.447 387 249 12 25 391 15 366 5.54e-14 73.9
Msa1102210 AT3G28960.1 21.447 387 249 12 25 391 15 366 5.54e-14 73.9
Msa1102210 AT3G09340.1 23.387 372 255 12 31 394 139 488 7.79e-14 73.9
Msa1102210 AT3G09330.1 23.387 372 255 12 31 394 139 488 1.48e-13 72.8
Msa1102210 AT2G39130.2 22.807 399 271 15 6 394 142 513 1.14e-12 70.1
Msa1102210 AT2G39130.1 22.807 399 271 15 6 394 142 513 1.14e-12 70.1
Msa1102210 AT2G41190.1 22.500 400 287 9 33 428 154 534 1.69e-12 69.7
Msa1102210 AT2G41190.2 24.405 336 231 9 33 364 154 470 1.82e-11 66.2
Msa1102210 AT3G11900.2 20.244 410 288 11 36 426 41 430 3.52e-11 65.1
Msa1102210 AT3G11900.1 20.244 410 288 11 36 426 41 430 3.52e-11 65.1
Msa1102210 AT2G39130.3 23.118 372 249 15 6 367 142 486 9.71e-11 63.9

Find 97 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAACTTGAACTCTATTTC+TGG 0.163457 7_3:-34698502 Msa1102210:CDS
TCGAATTGTATGAAAGAAAT+TGG 0.204583 7_3:-34696760 Msa1102210:three_prime_UTR
CAGTTGCTCTCATTGGTTAT+TGG 0.237858 7_3:-34698030 Msa1102210:CDS
AATCATAATTCTTCGCATTA+AGG 0.237872 7_3:+34696852 None:intergenic
GTTATAGAAAATGTTGATTA+TGG 0.261549 7_3:-34698250 Msa1102210:CDS
GCATTTCTTGACGAACTAAT+TGG 0.266230 7_3:+34699704 None:intergenic
AACATCCATAACATGCTTAT+TGG 0.287266 7_3:-34696700 Msa1102210:three_prime_UTR
CTCATTGGTTATTGGATGTT+TGG 0.296914 7_3:-34698022 Msa1102210:CDS
TTTGTTGTTATCCATGTTAT+TGG 0.301091 7_3:-34697929 Msa1102210:CDS
CCAGAAATAGAGTTCAAGTT+AGG 0.313363 7_3:+34698502 None:intergenic
TACTTTCCAGTTGCTCTCAT+TGG 0.318123 7_3:-34698037 Msa1102210:CDS
CTCCACCAATAAGCATGTTA+TGG 0.320358 7_3:+34696695 None:intergenic
ACTACCCCAGGAACTGTCTT+TGG 0.323215 7_3:-34698214 Msa1102210:CDS
GCCATTGCAATAAGCCAGTT+TGG 0.358796 7_3:+34697959 None:intergenic
TTTGGTTTCTTCAATGCCCT+TGG 0.367776 7_3:-34698196 Msa1102210:CDS
CACATAAACTAAATGTTCCT+TGG 0.371498 7_3:-34696503 Msa1102210:three_prime_UTR
GGAGATTCAGCTTGTCTTGG+TGG 0.374415 7_3:-34697359 Msa1102210:CDS
AAGAAACCAAAGACAGTTCC+TGG 0.375264 7_3:+34698208 None:intergenic
TAGCTTACAAAGTATGTTGT+TGG 0.377102 7_3:+34697497 None:intergenic
TCATCACATTATACACGTTA+TGG 0.383988 7_3:-34698795 Msa1102210:CDS
CCAAGTTGCGCCATGGCATA+AGG 0.384842 7_3:+34699617 None:intergenic
AACATTGTCTACATGGTAAC+TGG 0.392632 7_3:-34698637 Msa1102210:CDS
GAAATAGTAATATTTGTCTA+TGG 0.392814 7_3:-34696723 Msa1102210:three_prime_UTR
GAACTGGGTCAATATGCTTT+TGG 0.394335 7_3:-34698718 Msa1102210:CDS
CAATAACCAATGAGAGCAAC+TGG 0.394586 7_3:+34698031 None:intergenic
GTTCGTCAAGAAATGCAAAA+TGG 0.402237 7_3:-34699697 Msa1102210:CDS
GTTTCAATCATGTCAAATAC+TGG 0.407218 7_3:+34697775 None:intergenic
GCACAAAGCTACAACTATAT+AGG 0.415908 7_3:+34698060 None:intergenic
CTCCACATAGGACCCTTAGA+TGG 0.416492 7_3:+34698097 None:intergenic
ATTATACACGTTATGGCAAA+TGG 0.419864 7_3:-34698788 Msa1102210:CDS
CTTCAATGCCCTTGGAGATG+TGG 0.427219 7_3:-34698188 Msa1102210:CDS
AGTAGCTGCAACAAAGTAAA+GGG 0.448810 7_3:-34696668 Msa1102210:three_prime_UTR
ATTGACCTCAATCCTCCAAT+AGG 0.449419 7_3:+34696878 None:intergenic
CAACAACTTATTGTTGAAGT+TGG 0.451243 7_3:-34698664 Msa1102210:CDS
CAGTTACTCTACAATTGCTT+GGG 0.463934 7_3:-34698293 Msa1102210:CDS
TATCACCTATTGGAGGATTG+AGG 0.465217 7_3:-34696883 Msa1102210:CDS
GCAGTTACTCTACAATTGCT+TGG 0.470215 7_3:-34698294 Msa1102210:intron
ATATAGGTTTGCATTGTGCT+TGG 0.474894 7_3:-34696923 Msa1102210:intron
CCGCCGCTATCATGTCGTTA+AGG 0.476124 7_3:-34698468 Msa1102210:intron
CCTTATGCCATGGCGCAACT+TGG 0.477863 7_3:-34699617 Msa1102210:CDS
TGGGCAGCTTCTGCTCATAA+AGG 0.483954 7_3:-34698274 Msa1102210:CDS
CACAATGTTACTGCCATGGT+TGG 0.488589 7_3:-34699659 Msa1102210:CDS
CAGAAATAGAGTTCAAGTTA+GGG 0.490914 7_3:+34698503 None:intergenic
CCATGTTATTGGAAGCTACC+AGG 0.495046 7_3:-34697918 Msa1102210:intron
AAGTAGCTGCAACAAAGTAA+AGG 0.498889 7_3:-34696669 Msa1102210:three_prime_UTR
TATTGTACGAAATGTGTATG+TGG 0.498916 7_3:-34697704 Msa1102210:CDS
CAAGACAAGCTGAATCTCCT+TGG 0.500865 7_3:+34697363 None:intergenic
CAAGGAGATTCAGCTTGTCT+TGG 0.504542 7_3:-34697362 Msa1102210:CDS
CAAGTTGCGCCATGGCATAA+GGG 0.504930 7_3:+34699618 None:intergenic
TGACTTTAGAGAAACCAAAC+TGG 0.513027 7_3:-34697973 Msa1102210:CDS
TGGTGTTAACATTGTCTACA+TGG 0.520753 7_3:-34698644 Msa1102210:CDS
ATGCCATGGCGCAACTTGGA+TGG 0.528431 7_3:-34699613 Msa1102210:intron
CCTGGTAGCTTCCAATAACA+TGG 0.529595 7_3:+34697918 None:intergenic
ATCCATAACATGCTTATTGG+TGG 0.532645 7_3:-34696697 Msa1102210:three_prime_UTR
GTTACTGCCATGGTTGGAGC+TGG 0.535918 7_3:-34699653 Msa1102210:CDS
ATTGTACGAAATGTGTATGT+GGG 0.542188 7_3:-34697703 Msa1102210:intron
TCTTAGTCTCCCTTATGCCA+TGG 0.544235 7_3:-34699627 Msa1102210:CDS
GTGTAGATGGAATTGTTGCT+TGG 0.553420 7_3:+34698128 None:intergenic
TTCAGCTACCATGCATAATG+TGG 0.558234 7_3:-34697401 Msa1102210:intron
AATGGTTGAGATGCATGAAA+TGG 0.559811 7_3:-34698770 Msa1102210:CDS
ACCAAACTGGCTTATTGCAA+TGG 0.571650 7_3:-34697960 Msa1102210:CDS
TACAAAGCTACGACTACCCC+AGG 0.575799 7_3:-34698226 Msa1102210:CDS
TAACAGTATTAGTCCTCTCA+TGG 0.577651 7_3:-34698819 Msa1102210:CDS
AAGCAAAAGCCACATCTCCA+AGG 0.583498 7_3:+34698179 None:intergenic
GAGATGCATGAAATGGTACC+CGG 0.589392 7_3:-34698763 Msa1102210:CDS
CAACCATGGCAGTAACATTG+TGG 0.590369 7_3:+34699660 None:intergenic
GGCTTGCAATATACAAGCCA+AGG 0.591776 7_3:-34697380 Msa1102210:CDS
ATAAAACGCAACATTGTGGT+AGG 0.595326 7_3:+34697724 None:intergenic
AGAAACCAAAGACAGTTCCT+GGG 0.601129 7_3:+34698209 None:intergenic
TACAATAAAACGCAACATTG+TGG 0.602420 7_3:+34697720 None:intergenic
ACAATCACTCCTCTCCACAT+AGG 0.605359 7_3:+34698085 None:intergenic
AAGAACACCAGCTCCAACCA+TGG 0.608052 7_3:+34699646 None:intergenic
CTAAGATAAAGACATGCACT+TGG 0.610150 7_3:-34700339 None:intergenic
AACCATCTAAGGGTCCTATG+TGG 0.613202 7_3:-34698099 Msa1102210:CDS
AGGACTAATACTGTTACTCC+AGG 0.615520 7_3:+34698826 None:intergenic
TTCACTAAAACAATTAAACA+AGG 0.622647 7_3:+34696601 None:intergenic
AGCAAAAGCCACATCTCCAA+GGG 0.623365 7_3:+34698180 None:intergenic
AAATAGAGTTCAAGTTAGGG+AGG 0.624445 7_3:+34698506 None:intergenic
ATTGCAAGCCACATTATGCA+TGG 0.627374 7_3:+34697393 None:intergenic
ACAATTTGTAGTAATCGCCA+AGG 0.631719 7_3:+34696486 None:intergenic
ATACCATCCAAGTTGCGCCA+TGG 0.632975 7_3:+34699610 None:intergenic
ATTCCACAATGTTACTGCCA+TGG 0.635834 7_3:-34699663 Msa1102210:CDS
ACTTCAACAATAAGTTGTTG+TGG 0.635960 7_3:+34698667 None:intergenic
AGCAACAATTCCATCTACAC+CGG 0.636630 7_3:-34698125 Msa1102210:CDS
TTTGATAGATATCATGAACT+GGG 0.640129 7_3:-34698733 Msa1102210:CDS
CGTCAAGAAATGCAAAATGG+TGG 0.644321 7_3:-34699694 Msa1102210:CDS
TGACATGATTGAAACAGTGA+TGG 0.651752 7_3:-34697767 Msa1102210:CDS
TGCTTATGCTGGACACAACG+TGG 0.655602 7_3:-34698161 Msa1102210:CDS
GTGAGACAAGACAAAGTGAA+CGG 0.655631 7_3:+34698528 None:intergenic
GTACCTTAACGACATGATAG+CGG 0.661138 7_3:+34698465 None:intergenic
ATTGTCTACATGGTAACTGG+AGG 0.663381 7_3:-34698634 Msa1102210:CDS
TCTAAGGGTCCTATGTGGAG+AGG 0.663638 7_3:-34698094 Msa1102210:CDS
TCACTAAAACAATTAAACAA+GGG 0.682591 7_3:+34696602 None:intergenic
GAAACCAAAGACAGTTCCTG+GGG 0.694600 7_3:+34698210 None:intergenic
ATAATGTGATGAACCATGAG+AGG 0.706479 7_3:+34698806 None:intergenic
AGACAAGACAAAGTGAACGG+AGG 0.734305 7_3:+34698531 None:intergenic
CCTTAACGACATGATAGCGG+CGG 0.739980 7_3:+34698468 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATACATTTTCATATATTTT+AGG - chr7_3:34697307-34697326 Msa1102210:intron 10.0%
!!! ATACATTTTCATATATTTTA+GGG - chr7_3:34697308-34697327 Msa1102210:intron 10.0%
!! CAAAAATTAACTTAAAAATA+AGG + chr7_3:34697470-34697489 None:intergenic 10.0%
!!! TAAAAAATTCTAATTTTTTG+GGG + chr7_3:34697545-34697564 None:intergenic 10.0%
!!! GTTAAAAAATTCTAATTTTT+TGG + chr7_3:34697547-34697566 None:intergenic 10.0%
!!! AAAAAATTCTAATTTTGTTT+AGG - chr7_3:34697637-34697656 Msa1102210:intron 10.0%
!!! AAAAGTTGATATATTTTATA+GGG - chr7_3:34697813-34697832 Msa1102210:intron 10.0%
!!! AAGTTTTTATAAAAAAAGAA+GGG + chr7_3:34698958-34698977 None:intergenic 10.0%
!!! TAAGTTTTTATAAAAAAAGA+AGG + chr7_3:34698959-34698978 None:intergenic 10.0%
!! AATTATATGTCAATTTATAT+TGG + chr7_3:34699198-34699217 None:intergenic 10.0%
!!! ATTAAATCGTATTTTTTTAA+GGG - chr7_3:34699510-34699529 Msa1102210:intron 10.0%
!!! ATTAAGTTTTTTCATTTGAT+AGG + chr7_3:34696608-34696627 None:intergenic 15.0%
!! AAATAAAAAAATTACACACA+TGG - chr7_3:34696817-34696836 Msa1102210:three_prime_UTR 15.0%
!!! GATTGTATTTTATTTTGTAA+GGG - chr7_3:34696904-34696923 Msa1102210:CDS 15.0%
!!! ATTGTATTTTATTTTGTAAG+GGG - chr7_3:34696905-34696924 Msa1102210:CDS 15.0%
!!! CGTTTTGATTTTTTATTTTT+CGG - chr7_3:34697008-34697027 Msa1102210:intron 15.0%
!!! GTTTTGATTTTTTATTTTTC+GGG - chr7_3:34697009-34697028 Msa1102210:intron 15.0%
!!! AAACATTTTTTTTTAGAGAT+GGG + chr7_3:34697351-34697370 None:intergenic 15.0%
!!! AAAACATTTTTTTTTAGAGA+TGG + chr7_3:34697352-34697371 None:intergenic 15.0%
!! GAAAAATTGGTATATTTATA+GGG + chr7_3:34697379-34697398 None:intergenic 15.0%
!!! TAGTGATTGAAAATTTTATA+GGG + chr7_3:34697439-34697458 None:intergenic 15.0%
!!! GAAAAGTTGATATATTTTAT+AGG - chr7_3:34697812-34697831 Msa1102210:intron 15.0%
!!! CATTAAATCGTATTTTTTTA+AGG - chr7_3:34699509-34699528 Msa1102210:intron 15.0%
!! CAAAATTCTGAATATTTATA+GGG + chr7_3:34699553-34699572 None:intergenic 15.0%
!! ACAAAATTCTGAATATTTAT+AGG + chr7_3:34699554-34699573 None:intergenic 15.0%
!!! AAAAGTGATTTTATTTTGTA+AGG + chr7_3:34699584-34699603 None:intergenic 15.0%
!!! AAAGTGTTATTTTATTTTGT+AGG - chr7_3:34699739-34699758 Msa1102210:CDS 15.0%
!!! AAGTGTTATTTTATTTTGTA+GGG - chr7_3:34699740-34699759 Msa1102210:CDS 15.0%
!!! TTTATTTTTTAATAAGAACC+TGG - chr7_3:34699838-34699857 Msa1102210:intron 15.0%
!!! CTTTTTTTCATTGATAATAT+AGG - chr7_3:34699867-34699886 Msa1102210:intron 15.0%
!! ATATATCACAAAAACATAAT+AGG + chr7_3:34700251-34700270 None:intergenic 15.0%
!!! AAAAAACTTAATAGCTGTTT+TGG - chr7_3:34696616-34696635 Msa1102210:three_prime_UTR 20.0%
!!! TTGTATTTTACTTTGTTAGA+GGG + chr7_3:34696673-34696692 None:intergenic 20.0%
!!! ATTGTATTTTACTTTGTTAG+AGG + chr7_3:34696674-34696693 None:intergenic 20.0%
!! TAACAAAGTAAAATACAATC+CGG - chr7_3:34696675-34696694 Msa1102210:three_prime_UTR 20.0%
!!! GGATTGTATTTTATTTTGTA+AGG - chr7_3:34696903-34696922 Msa1102210:CDS 20.0%
!! TGTTATCAAACCAATAAAAA+AGG - chr7_3:34696956-34696975 Msa1102210:intron 20.0%
!!! TTTCTTATGTCCTTTTTTAT+TGG + chr7_3:34696969-34696988 None:intergenic 20.0%
!! AGATTGATGAAAAATTAAAG+AGG - chr7_3:34697055-34697074 Msa1102210:intron 20.0%
!!! TTTAGGGTTAAATATGTTTT+TGG - chr7_3:34697324-34697343 Msa1102210:intron 20.0%
!! CGAAAAATTGGTATATTTAT+AGG + chr7_3:34697380-34697399 None:intergenic 20.0%
!!! AGTTAAAGGAAAATTTTAGA+GGG + chr7_3:34697410-34697429 None:intergenic 20.0%
!!! AAGTTAAAGGAAAATTTTAG+AGG + chr7_3:34697411-34697430 None:intergenic 20.0%
!!! GTAGTGATTGAAAATTTTAT+AGG + chr7_3:34697440-34697459 None:intergenic 20.0%
!!! ATGAAGATGGAAAATTTTAT+AGG - chr7_3:34697751-34697770 Msa1102210:CDS 20.0%
!!! TATAGGGTTAAATATGTTTT+TGG + chr7_3:34697840-34697859 None:intergenic 20.0%
!! TTCATTGGACATAAAATATA+GGG + chr7_3:34697856-34697875 None:intergenic 20.0%
!! ATTCATTGGACATAAAATAT+AGG + chr7_3:34697857-34697876 None:intergenic 20.0%
!!! TAACAATTTTTGAGATTCAT+TGG + chr7_3:34697871-34697890 None:intergenic 20.0%
!!! TCATATTGATTGATTAAAGA+CGG + chr7_3:34698394-34698413 None:intergenic 20.0%
!!! GTTATAGAAAATGTTGATTA+TGG - chr7_3:34698556-34698575 Msa1102210:CDS 20.0%
!! GATAAAACAACTTCAATTAA+TGG - chr7_3:34699370-34699389 Msa1102210:intron 20.0%
!! TGCTGATGAAAAAATTTATA+AGG + chr7_3:34699611-34699630 None:intergenic 20.0%
!!! GCTGATAGAAAATTTTTATA+GGG + chr7_3:34699642-34699661 None:intergenic 20.0%
!!! TGCTGATAGAAAATTTTTAT+AGG + chr7_3:34699643-34699662 None:intergenic 20.0%
!!! AAAATTTCCATCAACATTTT+TGG - chr7_3:34699679-34699698 Msa1102210:CDS 20.0%
!!! CATTTTCCTTAAACATTTTA+GGG + chr7_3:34699706-34699725 None:intergenic 20.0%
!!! ACATTTTCCTTAAACATTTT+AGG + chr7_3:34699707-34699726 None:intergenic 20.0%
!! AATGAAAAAAAGATTAAACC+AGG + chr7_3:34699859-34699878 None:intergenic 20.0%
!! GAAATAGTAATATTTGTCTA+TGG - chr7_3:34700083-34700102 Msa1102210:intron 20.0%
!! TCACTAAAACAATTAAACAA+GGG + chr7_3:34700207-34700226 None:intergenic 20.0%
!! TTCACTAAAACAATTAAACA+AGG + chr7_3:34700208-34700227 None:intergenic 20.0%
! TTTCATTTGATAGGTACTAA+AGG + chr7_3:34696599-34696618 None:intergenic 25.0%
!!! GCAATTTTTTGATTCTTAAG+AGG + chr7_3:34696642-34696661 None:intergenic 25.0%
!!! TATTGGTTTGATAACAGTTT+TGG + chr7_3:34696952-34696971 None:intergenic 25.0%
! AAGGACATAAGAAATTCATT+TGG - chr7_3:34696975-34696994 Msa1102210:intron 25.0%
! TTATAGGGACTAAAAGTTAA+AGG + chr7_3:34697424-34697443 None:intergenic 25.0%
!! CATATGAGTTTACTTTAAAG+AGG - chr7_3:34697720-34697739 Msa1102210:CDS 25.0%
! TTATAGGAACTAAAAGTTGA+AGG - chr7_3:34697767-34697786 Msa1102210:CDS 25.0%
! AGTTGAAGGAAAAATTTAGA+TGG - chr7_3:34697781-34697800 Msa1102210:CDS 25.0%
!! GAATTTACAATGTGTTTTCA+GGG - chr7_3:34697955-34697974 Msa1102210:CDS 25.0%
!! AATTTACAATGTGTTTTCAG+GGG - chr7_3:34697956-34697975 Msa1102210:CDS 25.0%
!! ATATCTATCAAAACGTTTTC+CGG + chr7_3:34698065-34698084 None:intergenic 25.0%
!! TTTTGATAGATATCATGAAC+TGG - chr7_3:34698072-34698091 Msa1102210:CDS 25.0%
! TTTGATAGATATCATGAACT+GGG - chr7_3:34698073-34698092 Msa1102210:CDS 25.0%
!!! CAATTTGATTTTTTTGCAGT+CGG + chr7_3:34698233-34698252 None:intergenic 25.0%
! AAATGGAGTTAACAAATGAA+TGG + chr7_3:34698370-34698389 None:intergenic 25.0%
!!! TTTGTTGTTATCCATGTTAT+TGG - chr7_3:34698877-34698896 Msa1102210:intron 25.0%
! AATCATAATTCTTCGCATTA+AGG + chr7_3:34699957-34699976 None:intergenic 25.0%
! ATTCTCCACATAAAAAATGA+TGG - chr7_3:34699992-34700011 Msa1102210:intron 25.0%
! TAAAAAATGATGGCAACTTT+AGG - chr7_3:34700002-34700021 Msa1102210:intron 25.0%
! TCGAATTGTATGAAAGAAAT+TGG - chr7_3:34700046-34700065 Msa1102210:intron 25.0%
TTATCACTTTCCATGAAGTT+TGG - chr7_3:34696509-34696528 Msa1102210:three_prime_UTR 30.0%
TATCACTTTCCATGAAGTTT+GGG - chr7_3:34696510-34696529 Msa1102210:three_prime_UTR 30.0%
!! AACATTGACTTGGTCAAAAT+TGG + chr7_3:34696740-34696759 None:intergenic 30.0%
GAGGGATTAAAACGAAAAAT+TGG + chr7_3:34697392-34697411 None:intergenic 30.0%
AGAGGAACAAAAAATGAAGA+TGG - chr7_3:34697738-34697757 Msa1102210:CDS 30.0%
! CAATTGTGTATTTGTTGAGT+TGG - chr7_3:34697933-34697952 Msa1102210:CDS 30.0%
! GGAATTTACAATGTGTTTTC+AGG - chr7_3:34697954-34697973 Msa1102210:CDS 30.0%
TCATCACATTATACACGTTA+TGG - chr7_3:34698011-34698030 Msa1102210:CDS 30.0%
ATTATACACGTTATGGCAAA+TGG - chr7_3:34698018-34698037 Msa1102210:CDS 30.0%
! TATCTATCAAAACGTTTTCC+GGG + chr7_3:34698064-34698083 None:intergenic 30.0%
! ATATGCTTTTGGTGAAAAGT+TGG - chr7_3:34698099-34698118 Msa1102210:CDS 30.0%
! TATGCTTTTGGTGAAAAGTT+GGG - chr7_3:34698100-34698119 Msa1102210:CDS 30.0%
ACTTCAACAATAAGTTGTTG+TGG + chr7_3:34698142-34698161 None:intergenic 30.0%
CAACAACTTATTGTTGAAGT+TGG - chr7_3:34698142-34698161 Msa1102210:CDS 30.0%
! CAGAAATAGAGTTCAAGTTA+GGG + chr7_3:34698306-34698325 None:intergenic 30.0%
GATTGATTAAAGACGGTAAA+TGG + chr7_3:34698387-34698406 None:intergenic 30.0%
GTTTCAATCATGTCAAATAC+TGG + chr7_3:34699034-34699053 None:intergenic 30.0%
TACAATAAAACGCAACATTG+TGG + chr7_3:34699089-34699108 None:intergenic 30.0%
TATTGTACGAAATGTGTATG+TGG - chr7_3:34699102-34699121 Msa1102210:intron 30.0%
ATTGTACGAAATGTGTATGT+GGG - chr7_3:34699103-34699122 Msa1102210:intron 30.0%
!! GCTATTACTTTTCCGTTTTT+CGG - chr7_3:34699249-34699268 Msa1102210:intron 30.0%
TAGCTTACAAAGTATGTTGT+TGG + chr7_3:34699312-34699331 None:intergenic 30.0%
!! GTTGATGGAAATTTTTGACA+AGG + chr7_3:34699674-34699693 None:intergenic 30.0%
TTTGGTCCCTAAAATGTTTA+AGG - chr7_3:34699697-34699716 Msa1102210:CDS 30.0%
ACAGAACTGCGAATATTTAT+AGG - chr7_3:34699767-34699786 Msa1102210:intron 30.0%
CAGAACTGCGAATATTTATA+GGG - chr7_3:34699768-34699787 Msa1102210:intron 30.0%
! TTGATGCTTTTATCACCTAT+TGG - chr7_3:34699913-34699932 Msa1102210:intron 30.0%
!!! AGTTGCCATCATTTTTTATG+TGG + chr7_3:34700000-34700019 None:intergenic 30.0%
AACATCCATAACATGCTTAT+TGG - chr7_3:34700106-34700125 Msa1102210:intron 30.0%
CACATAAACTAAATGTTCCT+TGG - chr7_3:34700303-34700322 Msa1102210:intron 30.0%
!! AGCATTGACTTGGTCAAAAT+TGG - chr7_3:34696850-34696869 Msa1102210:CDS 35.0%
GCATTTCTTGACGAACTAAT+TGG + chr7_3:34697105-34697124 None:intergenic 35.0%
GTTCGTCAAGAAATGCAAAA+TGG - chr7_3:34697109-34697128 Msa1102210:intron 35.0%
TGTATTGAAGTCACCTAATG+AGG + chr7_3:34697293-34697312 None:intergenic 35.0%
TAACAGTATTAGTCCTCTCA+TGG - chr7_3:34697987-34698006 Msa1102210:CDS 35.0%
ATAATGTGATGAACCATGAG+AGG + chr7_3:34698003-34698022 None:intergenic 35.0%
AATGGTTGAGATGCATGAAA+TGG - chr7_3:34698036-34698055 Msa1102210:CDS 35.0%
! TGGTGTTAACATTGTCTACA+TGG - chr7_3:34698162-34698181 Msa1102210:CDS 35.0%
AACATTGTCTACATGGTAAC+TGG - chr7_3:34698169-34698188 Msa1102210:CDS 35.0%
! AAATAGAGTTCAAGTTAGGG+AGG + chr7_3:34698303-34698322 None:intergenic 35.0%
! CCAGAAATAGAGTTCAAGTT+AGG + chr7_3:34698307-34698326 None:intergenic 35.0%
CCTAACTTGAACTCTATTTC+TGG - chr7_3:34698304-34698323 Msa1102210:intron 35.0%
AAGCAATTGTAGAGTAACTG+CGG + chr7_3:34698513-34698532 None:intergenic 35.0%
CAGTTACTCTACAATTGCTT+GGG - chr7_3:34698513-34698532 Msa1102210:CDS 35.0%
GCACAAAGCTACAACTATAT+AGG + chr7_3:34698749-34698768 None:intergenic 35.0%
! CTCATTGGTTATTGGATGTT+TGG - chr7_3:34698784-34698803 Msa1102210:CDS 35.0%
! TGACTTTAGAGAAACCAAAC+TGG - chr7_3:34698833-34698852 Msa1102210:CDS 35.0%
!! CTTTGAAATTGAGTTTCACC+TGG + chr7_3:34698909-34698928 None:intergenic 35.0%
TGACATGATTGAAACAGTGA+TGG - chr7_3:34699039-34699058 Msa1102210:intron 35.0%
ATAAAACGCAACATTGTGGT+AGG + chr7_3:34699085-34699104 None:intergenic 35.0%
!! ATTACTTTTCCGTTTTTCGG+TGG - chr7_3:34699252-34699271 Msa1102210:intron 35.0%
TTAGGGACCAAAAATGTTGA+TGG + chr7_3:34699689-34699708 None:intergenic 35.0%
ATATAGGTTTGCATTGTGCT+TGG - chr7_3:34699883-34699902 Msa1102210:intron 35.0%
! ATGCTTTTATCACCTATTGG+AGG - chr7_3:34699916-34699935 Msa1102210:intron 35.0%
ATCCATAACATGCTTATTGG+TGG - chr7_3:34700109-34700128 Msa1102210:intron 35.0%
AAGTAGCTGCAACAAAGTAA+AGG - chr7_3:34700137-34700156 Msa1102210:intron 35.0%
AGTAGCTGCAACAAAGTAAA+GGG - chr7_3:34700138-34700157 Msa1102210:intron 35.0%
ACAATTTGTAGTAATCGCCA+AGG + chr7_3:34700323-34700342 None:intergenic 35.0%
CTAATAGCTCCCAAACTTCA+TGG + chr7_3:34696522-34696541 None:intergenic 40.0%
TGAGACCAAAACTGCAAAAG+GGG + chr7_3:34696715-34696734 None:intergenic 40.0%
CTGAGACCAAAACTGCAAAA+GGG + chr7_3:34696716-34696735 None:intergenic 40.0%
! TCTGAGACCAAAACTGCAAA+AGG + chr7_3:34696717-34696736 None:intergenic 40.0%
TGACCAAGTCAATGTTAACG+TGG - chr7_3:34696744-34696763 Msa1102210:three_prime_UTR 40.0%
! AGACCACGTTAACATTGACT+TGG + chr7_3:34696750-34696769 None:intergenic 40.0%
!! TGACTTGGTCAAAATTGGTC+TGG - chr7_3:34696855-34696874 Msa1102210:CDS 40.0%
! GACTTGGTCAAAATTGGTCT+GGG - chr7_3:34696856-34696875 Msa1102210:CDS 40.0%
!! AGCTTCCTAAGTATCGCTTT+TGG + chr7_3:34696883-34696902 None:intergenic 40.0%
AAAAGCGATACTTAGGAAGC+TGG - chr7_3:34696882-34696901 Msa1102210:CDS 40.0%
! GGCAAAAAGCAATTGATGAC+TGG - chr7_3:34697076-34697095 Msa1102210:intron 40.0%
CGTCAAGAAATGCAAAATGG+TGG - chr7_3:34697112-34697131 Msa1102210:intron 40.0%
ATTCCACAATGTTACTGCCA+TGG - chr7_3:34697143-34697162 Msa1102210:intron 40.0%
TTAACGCATGACTCCTCATT+AGG - chr7_3:34697277-34697296 Msa1102210:intron 40.0%
AGGACTAATACTGTTACTCC+AGG + chr7_3:34697983-34698002 None:intergenic 40.0%
! GAACTGGGTCAATATGCTTT+TGG - chr7_3:34698088-34698107 Msa1102210:CDS 40.0%
ATTGTCTACATGGTAACTGG+AGG - chr7_3:34698172-34698191 Msa1102210:CDS 40.0%
GTGAGACAAGACAAAGTGAA+CGG + chr7_3:34698281-34698300 None:intergenic 40.0%
GTACCTTAACGACATGATAG+CGG + chr7_3:34698344-34698363 None:intergenic 40.0%
GCAGTTACTCTACAATTGCT+TGG - chr7_3:34698512-34698531 Msa1102210:CDS 40.0%
AGAAACCAAAGACAGTTCCT+GGG + chr7_3:34698600-34698619 None:intergenic 40.0%
AAGAAACCAAAGACAGTTCC+TGG + chr7_3:34698601-34698620 None:intergenic 40.0%
! TTTGGTTTCTTCAATGCCCT+TGG - chr7_3:34698610-34698629 Msa1102210:CDS 40.0%
GTGTAGATGGAATTGTTGCT+TGG + chr7_3:34698681-34698700 None:intergenic 40.0%
AGCAACAATTCCATCTACAC+CGG - chr7_3:34698681-34698700 Msa1102210:CDS 40.0%
TACACCGGAAAAACCATCTA+AGG - chr7_3:34698696-34698715 Msa1102210:CDS 40.0%
ACACCGGAAAAACCATCTAA+GGG - chr7_3:34698697-34698716 Msa1102210:CDS 40.0%
TACTTTCCAGTTGCTCTCAT+TGG - chr7_3:34698769-34698788 Msa1102210:CDS 40.0%
CAATAACCAATGAGAGCAAC+TGG + chr7_3:34698778-34698797 None:intergenic 40.0%
! CAGTTGCTCTCATTGGTTAT+TGG - chr7_3:34698776-34698795 Msa1102210:CDS 40.0%
! ACCAAACTGGCTTATTGCAA+TGG - chr7_3:34698846-34698865 Msa1102210:intron 40.0%
!!! GGTGGTCTACTAGGATTTTT+TGG - chr7_3:34699270-34699289 Msa1102210:intron 40.0%
!!! GGTCTACTAGGATTTTTTGG+TGG - chr7_3:34699273-34699292 Msa1102210:intron 40.0%
TTCAGCTACCATGCATAATG+TGG - chr7_3:34699405-34699424 Msa1102210:intron 40.0%
ATTGCAAGCCACATTATGCA+TGG + chr7_3:34699416-34699435 None:intergenic 40.0%
TATCACCTATTGGAGGATTG+AGG - chr7_3:34699923-34699942 Msa1102210:intron 40.0%
ATTGACCTCAATCCTCCAAT+AGG + chr7_3:34699931-34699950 None:intergenic 40.0%
CTCCACCAATAAGCATGTTA+TGG + chr7_3:34700114-34700133 None:intergenic 40.0%
CAAAAGGGGCAGTACTTAGA+GGG + chr7_3:34696701-34696720 None:intergenic 45.0%
! TACTGCCCCTTTTGCAGTTT+TGG - chr7_3:34696707-34696726 Msa1102210:three_prime_UTR 45.0%
TGGGACCAAAAGCGATACTT+AGG - chr7_3:34696875-34696894 Msa1102210:CDS 45.0%
CAACCATGGCAGTAACATTG+TGG + chr7_3:34697149-34697168 None:intergenic 45.0%
CACAATGTTACTGCCATGGT+TGG - chr7_3:34697147-34697166 Msa1102210:intron 45.0%
TCTTAGTCTCCCTTATGCCA+TGG - chr7_3:34697179-34697198 Msa1102210:intron 45.0%
GAGATGCATGAAATGGTACC+CGG - chr7_3:34698043-34698062 Msa1102210:CDS 45.0%
AGACAAGACAAAGTGAACGG+AGG + chr7_3:34698278-34698297 None:intergenic 45.0%
GAAACCAAAGACAGTTCCTG+GGG + chr7_3:34698599-34698618 None:intergenic 45.0%
AGCAAAAGCCACATCTCCAA+GGG + chr7_3:34698629-34698648 None:intergenic 45.0%
AAGCAAAAGCCACATCTCCA+AGG + chr7_3:34698630-34698649 None:intergenic 45.0%
! GATGTGGCTTTTGCTTATGC+TGG - chr7_3:34698634-34698653 Msa1102210:CDS 45.0%
! GATGGTTTTTCCGGTGTAGA+TGG + chr7_3:34698694-34698713 None:intergenic 45.0%
! GGACCCTTAGATGGTTTTTC+CGG + chr7_3:34698703-34698722 None:intergenic 45.0%
AACCATCTAAGGGTCCTATG+TGG - chr7_3:34698707-34698726 Msa1102210:CDS 45.0%
ACAATCACTCCTCTCCACAT+AGG + chr7_3:34698724-34698743 None:intergenic 45.0%
GCCATTGCAATAAGCCAGTT+TGG + chr7_3:34698850-34698869 None:intergenic 45.0%
CCTGGTAGCTTCCAATAACA+TGG + chr7_3:34698891-34698910 None:intergenic 45.0%
CCATGTTATTGGAAGCTACC+AGG - chr7_3:34698888-34698907 Msa1102210:intron 45.0%
GCAATGAACATTGTGAACGC+TGG + chr7_3:34699231-34699250 None:intergenic 45.0%
CCTAGTAGACCACCGAAAAA+CGG + chr7_3:34699264-34699283 None:intergenic 45.0%
GGCTTGCAATATACAAGCCA+AGG - chr7_3:34699426-34699445 Msa1102210:intron 45.0%
CAAGACAAGCTGAATCTCCT+TGG + chr7_3:34699446-34699465 None:intergenic 45.0%
CAAGGAGATTCAGCTTGTCT+TGG - chr7_3:34699444-34699463 Msa1102210:intron 45.0%
!!! TTAAAAAATTCTAATTTTTT+GGG + chr7_3:34697546-34697565 None:intergenic 5.0%
!!! ATGAATTTTTATATTTTTTA+TGG + chr7_3:34697598-34697617 None:intergenic 5.0%
GCAAAAGGGGCAGTACTTAG+AGG + chr7_3:34696702-34696721 None:intergenic 50.0%
TGACCAAGTCAATGCTGACG+TGG + chr7_3:34696846-34696865 None:intergenic 50.0%
GGGTGAAAATCGCAACTTCG+CGG - chr7_3:34696925-34696944 Msa1102210:intron 50.0%
GGTGAAAATCGCAACTTCGC+GGG - chr7_3:34696926-34696945 Msa1102210:intron 50.0%
AAGAACACCAGCTCCAACCA+TGG + chr7_3:34697163-34697182 None:intergenic 50.0%
CAAGTTGCGCCATGGCATAA+GGG + chr7_3:34697191-34697210 None:intergenic 50.0%
ATACCATCCAAGTTGCGCCA+TGG + chr7_3:34697199-34697218 None:intergenic 50.0%
!! CAATGTGTTTTCAGGGGTCC+TGG - chr7_3:34697962-34697981 Msa1102210:CDS 50.0%
!! CCTTAACGACATGATAGCGG+CGG + chr7_3:34698341-34698360 None:intergenic 50.0%
TGGGCAGCTTCTGCTCATAA+AGG - chr7_3:34698532-34698551 Msa1102210:CDS 50.0%
TACAAAGCTACGACTACCCC+AGG - chr7_3:34698580-34698599 Msa1102210:CDS 50.0%
ACTACCCCAGGAACTGTCTT+TGG - chr7_3:34698592-34698611 Msa1102210:CDS 50.0%
CTTCAATGCCCTTGGAGATG+TGG - chr7_3:34698618-34698637 Msa1102210:CDS 50.0%
TGCTTATGCTGGACACAACG+TGG - chr7_3:34698645-34698664 Msa1102210:CDS 50.0%
CTCCACATAGGACCCTTAGA+TGG + chr7_3:34698712-34698731 None:intergenic 50.0%
TCTAAGGGTCCTATGTGGAG+AGG - chr7_3:34698712-34698731 Msa1102210:CDS 50.0%
!! CCGTTTTTCGGTGGTCTACT+AGG - chr7_3:34699261-34699280 Msa1102210:intron 50.0%
GGAGATTCAGCTTGTCTTGG+TGG - chr7_3:34699447-34699466 Msa1102210:intron 50.0%
!! CGTCCACGTCAGCATTGACT+TGG - chr7_3:34696840-34696859 Msa1102210:exon 55.0%
GTTACTGCCATGGTTGGAGC+TGG - chr7_3:34697153-34697172 Msa1102210:intron 55.0%
CCAAGTTGCGCCATGGCATA+AGG + chr7_3:34697192-34697211 None:intergenic 55.0%
CCTTATGCCATGGCGCAACT+TGG - chr7_3:34697189-34697208 Msa1102210:intron 55.0%
ATGCCATGGCGCAACTTGGA+TGG - chr7_3:34697193-34697212 Msa1102210:intron 55.0%
CCGCCGCTATCATGTCGTTA+AGG - chr7_3:34698338-34698357 Msa1102210:intron 55.0%
AGGGGCAGTACTTAGAGGGC+CGG + chr7_3:34696697-34696716 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 34696480 34700348 34696480 ID=Msa1102210;Name=Msa1102210
chr7_3 mRNA 34696480 34700348 34696480 ID=Msa1102210-mRNA-1;Parent=Msa1102210;Name=Msa1102210-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.85|0.87|0.87|0.71|0.75|8|361|436
chr7_3 exon 34696480 34696939 34696480 ID=Msa1102210-mRNA-1:exon:7347;Parent=Msa1102210-mRNA-1
chr7_3 exon 34697350 34697418 34697350 ID=Msa1102210-mRNA-1:exon:7346;Parent=Msa1102210-mRNA-1
chr7_3 exon 34697505 34697596 34697505 ID=Msa1102210-mRNA-1:exon:7345;Parent=Msa1102210-mRNA-1
chr7_3 exon 34697704 34697809 34697704 ID=Msa1102210-mRNA-1:exon:7344;Parent=Msa1102210-mRNA-1
chr7_3 exon 34697919 34698312 34697919 ID=Msa1102210-mRNA-1:exon:7343;Parent=Msa1102210-mRNA-1
chr7_3 exon 34698469 34698852 34698469 ID=Msa1102210-mRNA-1:exon:7342;Parent=Msa1102210-mRNA-1
chr7_3 exon 34699614 34699771 34699614 ID=Msa1102210-mRNA-1:exon:7341;Parent=Msa1102210-mRNA-1
chr7_3 exon 34700340 34700348 34700340 ID=Msa1102210-mRNA-1:exon:7340;Parent=Msa1102210-mRNA-1
chr7_3 CDS 34700340 34700348 34700340 ID=Msa1102210-mRNA-1:cds;Parent=Msa1102210-mRNA-1
chr7_3 CDS 34699614 34699771 34699614 ID=Msa1102210-mRNA-1:cds;Parent=Msa1102210-mRNA-1
chr7_3 CDS 34698469 34698852 34698469 ID=Msa1102210-mRNA-1:cds;Parent=Msa1102210-mRNA-1
chr7_3 CDS 34697919 34698312 34697919 ID=Msa1102210-mRNA-1:cds;Parent=Msa1102210-mRNA-1
chr7_3 CDS 34697704 34697809 34697704 ID=Msa1102210-mRNA-1:cds;Parent=Msa1102210-mRNA-1
chr7_3 CDS 34697505 34697596 34697505 ID=Msa1102210-mRNA-1:cds;Parent=Msa1102210-mRNA-1
chr7_3 CDS 34697350 34697418 34697350 ID=Msa1102210-mRNA-1:cds;Parent=Msa1102210-mRNA-1
chr7_3 CDS 34696841 34696939 34696841 ID=Msa1102210-mRNA-1:cds;Parent=Msa1102210-mRNA-1
chr7_3 three_prime_UTR 34696480 34696840 34696480 ID=Msa1102210-mRNA-1:three_prime_utr;Parent=Msa1102210-mRNA-1
Gene Sequence

>Msa1102210

ATGCACTTGATTGATGAAAAATTAAAGAGGCAAAAAGCAATTGATGACTGGCTTCCAATTAGTTCGTCAAGAAATGCAAAATGGTGGTATTCTGCATTCCACAATGTTACTGCCATGGTTGGAGCTGGTGTTCTTAGTCTCCCTTATGCCATGGCGCAACTTGGATGGGGTCCTGGAGTAACAGTATTAGTCCTCTCATGGTTCATCACATTATACACGTTATGGCAAATGGTTGAGATGCATGAAATGGTACCCGGAAAACGTTTTGATAGATATCATGAACTGGGTCAATATGCTTTTGGTGAAAAGTTGGGTCTCTATATTGTTGTGCCACAACAACTTATTGTTGAAGTTGGTGTTAACATTGTCTACATGGTAACTGGAGGAAAATCTTTGCAGAAGTTTCATGATACTGTTTGTTCCGACTGCAAAAAAATCAAATTGACTTACTTTATAATGATTTTCGCCTCCGTTCACTTTGTCTTGTCTCACCTCCCTAACTTGAACTCTATTTCTGGTGTCTCTTTAGCCGCCGCTATCATGTCGTTAAGTTACTCTACAATTGCTTGGGCAGCTTCTGCTCATAAAGGTGTTATAGAAAATGTTGATTATGGTTACAAAGCTACGACTACCCCAGGAACTGTCTTTGGTTTCTTCAATGCCCTTGGAGATGTGGCTTTTGCTTATGCTGGACACAACGTGGTGTTAGAAATCCAAGCAACAATTCCATCTACACCGGAAAAACCATCTAAGGGTCCTATGTGGAGAGGAGTGATTGTAGCCTATATAGTTGTAGCTTTGTGCTACTTTCCAGTTGCTCTCATTGGTTATTGGATGTTTGGAAATAGTGTTGATGACAACATTCTCATGACTTTAGAGAAACCAAACTGGCTTATTGCAATGGCTAACATGTTTGTTGTTATCCATGTTATTGGAAGCTACCAGATCTATGCAATGCCAGTATTTGACATGATTGAAACAGTGATGGTAAAGAAGTTGAATTTCAAGCCTACCACAATGTTGCGTTTTATTGTACGAAATGTGTATGTGGCGTTCACAATGTTCATTGCTATTACTTTTCCGTTTTTCGGTGGTCTACTAGGATTTTTTGGTGGATTTGCTTTTGCTCCAACAACATACTTTCTACCATGCATAATGTGGCTTGCAATATACAAGCCAAGGAGATTCAGCTTGTCTTGGTGGTGTAACTATGTTTGCATTGTGCTTGGCTTATGTTTGATGCTTTTATCACCTATTGGAGGATTGAGGTCAATCATCCTTAATGCGAAGAATTATGATTTCTATTCTTAA

Protein sequence

>Msa1102210

MHLIDEKLKRQKAIDDWLPISSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVTVLVLSWFITLYTLWQMVEMHEMVPGKRFDRYHELGQYAFGEKLGLYIVVPQQLIVEVGVNIVYMVTGGKSLQKFHDTVCSDCKKIKLTYFIMIFASVHFVLSHLPNLNSISGVSLAAAIMSLSYSTIAWAASAHKGVIENVDYGYKATTTPGTVFGFFNALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVIVAYIVVALCYFPVALIGYWMFGNSVDDNILMTLEKPNWLIAMANMFVVIHVIGSYQIYAMPVFDMIETVMVKKLNFKPTTMLRFIVRNVYVAFTMFIAITFPFFGGLLGFFGGFAFAPTTYFLPCIMWLAIYKPRRFSLSWWCNYVCIVLGLCLMLLSPIGGLRSIILNAKNYDFYS*