Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662040 | XP_003622943.1 | 85.930 | 199 | 16 | 1 | 1 | 199 | 1 | 187 | 7.31e-121 | 351 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662040 | sp|P47192|VA722_ARATH | 66.332 | 199 | 55 | 1 | 1 | 199 | 1 | 187 | 3.97e-93 | 273 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662040 | G7L1A5 | 85.930 | 199 | 16 | 1 | 1 | 199 | 1 | 187 | 3.49e-121 | 351 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002300 | Msa0662040 | 0.894863 | 1.652508e-75 | -8.615850e-47 |
| Msa0662010 | Msa0662040 | 0.919476 | 4.291935e-87 | -8.615850e-47 |
| Msa0662040 | Msa0675590 | 0.800041 | 1.735555e-48 | -8.615850e-47 |
| Msa0662040 | Msa0765140 | 0.808757 | 2.646784e-50 | -8.615850e-47 |
| Msa0662040 | Msa1016100 | 0.806673 | 7.337160e-50 | -8.615850e-47 |
| Msa0662040 | Msa1030210 | 0.829299 | 5.564923e-55 | -8.615850e-47 |
| Msa0662040 | Msa1077970 | 0.806514 | 7.929144e-50 | -8.615850e-47 |
| Msa0662040 | Msa1102210 | 0.830777 | 2.425670e-55 | -8.615850e-47 |
| Msa0662040 | Msa1105320 | 0.806415 | 8.317752e-50 | -8.615850e-47 |
| Msa0662040 | Msa1105360 | 0.892595 | 1.373292e-74 | -8.615850e-47 |
| Msa0662040 | Msa1105390 | 0.865476 | 5.746662e-65 | -8.615850e-47 |
| Msa0662040 | Msa1131120 | 0.810480 | 1.128561e-50 | -8.615850e-47 |
| Msa0150640 | Msa0662040 | 0.805644 | 1.208377e-49 | -8.615850e-47 |
| Msa0275730 | Msa0662040 | 0.809008 | 2.339199e-50 | -8.615850e-47 |
| Msa0310190 | Msa0662040 | 0.805735 | 1.156381e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662040 | MtrunA17_Chr7g0237521 | 85.930 | 199 | 16 | 1 | 1 | 199 | 1 | 187 | 6.72e-125 | 351 |
| Msa0662040 | MtrunA17_Chr4g0010271 | 68.844 | 199 | 50 | 1 | 1 | 199 | 1 | 187 | 3.13e-98 | 283 |
| Msa0662040 | MtrunA17_Chr1g0169861 | 62.814 | 199 | 62 | 1 | 1 | 199 | 51 | 237 | 5.18e-92 | 270 |
| Msa0662040 | MtrunA17_Chr7g0237561 | 64.824 | 199 | 58 | 1 | 1 | 199 | 1 | 187 | 2.22e-91 | 266 |
| Msa0662040 | MtrunA17_Chr4g0043521 | 60.406 | 197 | 66 | 1 | 3 | 199 | 5 | 189 | 9.61e-87 | 254 |
| Msa0662040 | MtrunA17_Chr2g0291651 | 60.406 | 197 | 66 | 1 | 3 | 199 | 7 | 191 | 7.15e-85 | 250 |
| Msa0662040 | MtrunA17_Chr2g0296021 | 60.302 | 199 | 67 | 1 | 1 | 199 | 1 | 187 | 1.91e-84 | 249 |
| Msa0662040 | MtrunA17_Chr1g0210521 | 46.789 | 218 | 85 | 3 | 1 | 199 | 1 | 206 | 4.41e-68 | 208 |
| Msa0662040 | MtrunA17_Chr1g0169851 | 54.483 | 145 | 51 | 1 | 70 | 199 | 9 | 153 | 3.86e-53 | 167 |
| Msa0662040 | MtrunA17_Chr4g0010211 | 70.093 | 107 | 32 | 0 | 76 | 182 | 3 | 109 | 1.77e-51 | 161 |
| Msa0662040 | MtrunA17_Chr4g0026121 | 30.102 | 196 | 122 | 4 | 5 | 199 | 2 | 183 | 6.78e-28 | 104 |
| Msa0662040 | MtrunA17_Chr5g0441741 | 33.679 | 193 | 113 | 4 | 5 | 196 | 2 | 180 | 7.78e-28 | 104 |
| Msa0662040 | MtrunA17_Chr4g0064371 | 30.256 | 195 | 125 | 6 | 6 | 199 | 3 | 187 | 8.10e-21 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662040 | AT2G33120.2 | 66.834 | 199 | 62 | 2 | 1 | 199 | 1 | 195 | 1.04e-95 | 278 |
| Msa0662040 | AT2G33120.1 | 66.332 | 199 | 55 | 1 | 1 | 199 | 1 | 187 | 4.03e-94 | 273 |
| Msa0662040 | AT1G04750.1 | 65.829 | 199 | 56 | 1 | 1 | 199 | 1 | 187 | 1.18e-93 | 272 |
| Msa0662040 | AT1G04760.2 | 63.317 | 199 | 61 | 1 | 1 | 199 | 1 | 187 | 4.13e-92 | 268 |
| Msa0662040 | AT1G04760.1 | 63.317 | 199 | 61 | 1 | 1 | 199 | 1 | 187 | 4.13e-92 | 268 |
| Msa0662040 | AT2G32670.1 | 63.819 | 199 | 60 | 1 | 1 | 199 | 66 | 252 | 1.79e-91 | 269 |
| Msa0662040 | AT4G15780.1 | 58.763 | 194 | 67 | 2 | 1 | 193 | 1 | 182 | 2.42e-79 | 235 |
| Msa0662040 | AT2G33110.1 | 54.040 | 198 | 75 | 2 | 1 | 198 | 1 | 182 | 7.58e-69 | 209 |
| Msa0662040 | AT3G54300.3 | 47.273 | 220 | 81 | 3 | 1 | 199 | 1 | 206 | 2.02e-68 | 209 |
| Msa0662040 | AT3G54300.2 | 47.273 | 220 | 81 | 3 | 1 | 199 | 1 | 206 | 2.02e-68 | 209 |
| Msa0662040 | AT3G54300.1 | 47.273 | 220 | 81 | 3 | 1 | 199 | 1 | 206 | 2.02e-68 | 209 |
| Msa0662040 | AT2G33110.2 | 58.046 | 174 | 61 | 1 | 1 | 174 | 1 | 162 | 6.41e-68 | 206 |
| Msa0662040 | AT1G04750.2 | 66.972 | 109 | 36 | 0 | 91 | 199 | 1 | 109 | 2.83e-49 | 157 |
| Msa0662040 | AT1G04750.4 | 66.972 | 109 | 36 | 0 | 91 | 199 | 1 | 109 | 2.83e-49 | 157 |
| Msa0662040 | AT1G04750.3 | 66.972 | 109 | 36 | 0 | 91 | 199 | 1 | 109 | 2.83e-49 | 157 |
| Msa0662040 | AT5G11150.1 | 31.980 | 197 | 118 | 4 | 5 | 199 | 2 | 184 | 5.17e-28 | 105 |
| Msa0662040 | AT5G11150.2 | 31.980 | 197 | 118 | 4 | 5 | 199 | 2 | 184 | 7.73e-28 | 105 |
| Msa0662040 | AT5G22360.1 | 30.964 | 197 | 120 | 5 | 5 | 199 | 2 | 184 | 2.78e-27 | 103 |
| Msa0662040 | AT4G32150.1 | 31.088 | 193 | 118 | 4 | 5 | 196 | 2 | 180 | 8.23e-25 | 97.1 |
| Msa0662040 | AT2G25340.1 | 30.319 | 188 | 116 | 4 | 5 | 191 | 2 | 175 | 3.71e-23 | 92.8 |
| Msa0662040 | AT2G33120.3 | 62.963 | 54 | 20 | 0 | 146 | 199 | 52 | 105 | 1.27e-14 | 68.2 |
Find 33 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGCTTGAACAAAGAATT+TGG | 0.149954 | 4_3:-73841947 | Msa0662040:CDS |
| GCAAGTTTGCTAACCTCTTC+TGG | 0.229459 | 4_3:+73841782 | None:intergenic |
| GGCTATTTCAGCGAAGTTTC+CGG | 0.268195 | 4_3:+73842431 | None:intergenic |
| TGGTTTCTGGGAGTCTTTGC+AGG | 0.286531 | 4_3:+73842400 | None:intergenic |
| GGCGCGTGGCACGGTGATTC+TGG | 0.320729 | 4_3:-73842472 | Msa0662040:CDS |
| TCCGGTGAAGTTGGTGTGCT+CGG | 0.407070 | 4_3:+73842449 | None:intergenic |
| AACTGACAACCTTCGTGATC+AGG | 0.429765 | 4_3:-73841568 | Msa0662040:intron |
| AAAGCTTGAACAAAGAATTT+GGG | 0.431429 | 4_3:-73841946 | Msa0662040:intron |
| ATCACTTATATACAGCTTTG+TGG | 0.443785 | 4_3:-73842493 | Msa0662040:CDS |
| CTCCTTGATGCGATCAAGAA+AGG | 0.482399 | 4_3:+73842018 | None:intergenic |
| CAGCTTTGTGGCGCGTGGCA+CGG | 0.506415 | 4_3:-73842481 | Msa0662040:CDS |
| GCCGAGCACACCAACTTCAC+CGG | 0.518367 | 4_3:-73842450 | Msa0662040:CDS |
| AGCGAAGTTTCCGGTGAAGT+TGG | 0.520827 | 4_3:+73842440 | None:intergenic |
| TCAAGTTCTAGATGTTATGT+TGG | 0.523120 | 4_3:-73841738 | Msa0662040:CDS |
| GGCCTTTCTTGATCGCATCA+AGG | 0.526618 | 4_3:-73842020 | Msa0662040:CDS |
| AGCTTACTGCGTTGTTGCTG+TGG | 0.527710 | 4_3:-73842068 | Msa0662040:CDS |
| TTCAACTACCTCGCCCATGA+TGG | 0.533919 | 4_3:-73842342 | Msa0662040:CDS |
| GTTAAGTACTGAATCCATCA+TGG | 0.534501 | 4_3:+73842328 | None:intergenic |
| ATCATGGGCGAGGTAGTTGA+AGG | 0.542753 | 4_3:+73842344 | None:intergenic |
| GAGTCTTTGCAGGCATTGCA+AGG | 0.572287 | 4_3:+73842410 | None:intergenic |
| TACTGAATCCATCATGGGCG+AGG | 0.576277 | 4_3:+73842334 | None:intergenic |
| ACATGATCGTCATATTGCTA+TGG | 0.577485 | 4_3:-73842098 | Msa0662040:CDS |
| ACTTGCGAAAGTAAAAGCTC+AGG | 0.586038 | 4_3:-73841765 | Msa0662040:CDS |
| ATATACAGCTTTGTGGCGCG+TGG | 0.589934 | 4_3:-73842486 | Msa0662040:CDS |
| ATGGTTTAGACCGAAAATGA+AGG | 0.599090 | 4_3:-73841831 | Msa0662040:intron |
| TTGTGTGGAACATCCAGAAG+AGG | 0.606701 | 4_3:-73841795 | Msa0662040:CDS |
| TTAAGTACTGAATCCATCAT+GGG | 0.623193 | 4_3:+73842329 | None:intergenic |
| GTAGTTGAAGGTATGACCAT+CGG | 0.631667 | 4_3:+73842356 | None:intergenic |
| CTTTCTTGATCGCATCAAGG+AGG | 0.649404 | 4_3:-73842017 | Msa0662040:CDS |
| AAATTCACTTACAACACCGA+TGG | 0.653817 | 4_3:-73842372 | Msa0662040:CDS |
| TTTACCAAAAGATATGCTGG+AGG | 0.669628 | 4_3:-73841992 | Msa0662040:CDS |
| GGAGCATATGCATTATTGTG+TGG | 0.691867 | 4_3:-73841810 | Msa0662040:CDS |
| ATAAAAGGACCTGATCACGA+AGG | 0.753478 | 4_3:+73841559 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAGTTTTTTTATTGTATA+TGG | - | chr4_3:73841920-73841939 | Msa0662040:intron | 10.0% |
| !!! | TAAAGTTTTTTTATTGTATA+TGG | - | chr4_3:73841920-73841939 | Msa0662040:intron | 10.0% |
| !!! | AATTTTCTCTTTTAATCTAA+CGG | + | chr4_3:73842126-73842145 | None:intergenic | 15.0% |
| !!! | ATTTTATTTGTTTTATATGC+AGG | - | chr4_3:73842143-73842162 | Msa0662040:intron | 15.0% |
| !! | TTTATGTATGAACAAATAAA+AGG | + | chr4_3:73842233-73842252 | None:intergenic | 15.0% |
| !! | TTATATTATATATGGTTACT+AGG | + | chr4_3:73842368-73842387 | None:intergenic | 15.0% |
| !!! | AATTTTCTCTTTTAATCTAA+CGG | + | chr4_3:73842126-73842145 | None:intergenic | 15.0% |
| !!! | ATTTTATTTGTTTTATATGC+AGG | - | chr4_3:73842143-73842162 | Msa0662040:intron | 15.0% |
| !! | TTTATGTATGAACAAATAAA+AGG | + | chr4_3:73842233-73842252 | None:intergenic | 15.0% |
| !! | TTATATTATATATGGTTACT+AGG | + | chr4_3:73842368-73842387 | None:intergenic | 15.0% |
| !! | ATGTGAATATGTAATATAAG+AGG | - | chr4_3:73841524-73841543 | Msa0662040:intron | 20.0% |
| !!! | GTTTTTTTATTGTATATGGA+TGG | - | chr4_3:73841924-73841943 | Msa0662040:intron | 20.0% |
| !! | ATGTGAATATGTAATATAAG+AGG | - | chr4_3:73841524-73841543 | Msa0662040:intron | 20.0% |
| !!! | GTTTTTTTATTGTATATGGA+TGG | - | chr4_3:73841924-73841943 | Msa0662040:intron | 20.0% |
| ! | CAAATCATAAATTTCCTTAG+AGG | + | chr4_3:73841603-73841622 | None:intergenic | 25.0% |
| ! | AAAAGCTTGAACAAAGAATT+TGG | - | chr4_3:73841827-73841846 | Msa0662040:intron | 25.0% |
| ! | AAAGCTTGAACAAAGAATTT+GGG | - | chr4_3:73841828-73841847 | Msa0662040:intron | 25.0% |
| !!! | TATGTTGGAAAATTTTGATC+AGG | - | chr4_3:73842051-73842070 | Msa0662040:CDS | 25.0% |
| ! | AGGTATGTATATGTCTAAAT+TGG | - | chr4_3:73842071-73842090 | Msa0662040:CDS | 25.0% |
| ! | ACATAAACTTTGTGTTCATT+TGG | - | chr4_3:73842246-73842265 | Msa0662040:intron | 25.0% |
| ! | ATGTGAGTCATTTATTTCAA+AGG | + | chr4_3:73842318-73842337 | None:intergenic | 25.0% |
| !! | TTTGAAATAAATGACTCACA+TGG | - | chr4_3:73842317-73842336 | Msa0662040:intron | 25.0% |
| ! | ATTATATATGGTTACTAGGA+TGG | + | chr4_3:73842364-73842383 | None:intergenic | 25.0% |
| ! | CTATAGTTATGTAACTGATA+TGG | - | chr4_3:73842437-73842456 | Msa0662040:CDS | 25.0% |
| ! | TAACTGATATGGTTTGAATA+TGG | - | chr4_3:73842448-73842467 | Msa0662040:CDS | 25.0% |
| ! | CAAATCATAAATTTCCTTAG+AGG | + | chr4_3:73841603-73841622 | None:intergenic | 25.0% |
| ! | AAAAGCTTGAACAAAGAATT+TGG | - | chr4_3:73841827-73841846 | Msa0662040:intron | 25.0% |
| ! | AAAGCTTGAACAAAGAATTT+GGG | - | chr4_3:73841828-73841847 | Msa0662040:intron | 25.0% |
| !!! | TATGTTGGAAAATTTTGATC+AGG | - | chr4_3:73842051-73842070 | Msa0662040:CDS | 25.0% |
| ! | AGGTATGTATATGTCTAAAT+TGG | - | chr4_3:73842071-73842090 | Msa0662040:CDS | 25.0% |
| ! | ACATAAACTTTGTGTTCATT+TGG | - | chr4_3:73842246-73842265 | Msa0662040:intron | 25.0% |
| ! | ATGTGAGTCATTTATTTCAA+AGG | + | chr4_3:73842318-73842337 | None:intergenic | 25.0% |
| !! | TTTGAAATAAATGACTCACA+TGG | - | chr4_3:73842317-73842336 | Msa0662040:intron | 25.0% |
| ! | ATTATATATGGTTACTAGGA+TGG | + | chr4_3:73842364-73842383 | None:intergenic | 25.0% |
| ! | CTATAGTTATGTAACTGATA+TGG | - | chr4_3:73842437-73842456 | Msa0662040:CDS | 25.0% |
| ! | TAACTGATATGGTTTGAATA+TGG | - | chr4_3:73842448-73842467 | Msa0662040:CDS | 25.0% |
| ATCACTTATATACAGCTTTG+TGG | - | chr4_3:73841281-73841300 | Msa0662040:CDS | 30.0% | |
| !!! | TGAATTTTGTGTTGGTTTCT+GGG | + | chr4_3:73841389-73841408 | None:intergenic | 30.0% |
| ! | GTTGTAAGTGAATTTTGTGT+TGG | + | chr4_3:73841397-73841416 | None:intergenic | 30.0% |
| !! | TTAAGTACTGAATCCATCAT+GGG | + | chr4_3:73841448-73841467 | None:intergenic | 30.0% |
| ! | TTTTGATCGCAATATTGCTA+TGG | - | chr4_3:73841733-73841752 | Msa0662040:CDS | 30.0% |
| ! | GATTTTACCAAAAGATATGC+TGG | - | chr4_3:73841779-73841798 | Msa0662040:CDS | 30.0% |
| !! | TCAAGTTCTAGATGTTATGT+TGG | - | chr4_3:73842036-73842055 | Msa0662040:CDS | 30.0% |
| ATCACTTATATACAGCTTTG+TGG | - | chr4_3:73841281-73841300 | Msa0662040:CDS | 30.0% | |
| !!! | TGAATTTTGTGTTGGTTTCT+GGG | + | chr4_3:73841389-73841408 | None:intergenic | 30.0% |
| ! | GTTGTAAGTGAATTTTGTGT+TGG | + | chr4_3:73841397-73841416 | None:intergenic | 30.0% |
| !! | TTAAGTACTGAATCCATCAT+GGG | + | chr4_3:73841448-73841467 | None:intergenic | 30.0% |
| ! | TTTTGATCGCAATATTGCTA+TGG | - | chr4_3:73841733-73841752 | Msa0662040:CDS | 30.0% |
| ! | GATTTTACCAAAAGATATGC+TGG | - | chr4_3:73841779-73841798 | Msa0662040:CDS | 30.0% |
| !! | TCAAGTTCTAGATGTTATGT+TGG | - | chr4_3:73842036-73842055 | Msa0662040:CDS | 30.0% |
| !!! | GTGAATTTTGTGTTGGTTTC+TGG | + | chr4_3:73841390-73841409 | None:intergenic | 35.0% |
| AAATTCACTTACAACACCGA+TGG | - | chr4_3:73841402-73841421 | Msa0662040:intron | 35.0% | |
| !! | GTTAAGTACTGAATCCATCA+TGG | + | chr4_3:73841449-73841468 | None:intergenic | 35.0% |
| CTAGAATGCATTTGCATGTA+CGG | - | chr4_3:73841555-73841574 | Msa0662040:intron | 35.0% | |
| TAGAATGCATTTGCATGTAC+GGG | - | chr4_3:73841556-73841575 | Msa0662040:intron | 35.0% | |
| ACATGATCGTCATATTGCTA+TGG | - | chr4_3:73841676-73841695 | Msa0662040:intron | 35.0% | |
| TTTACCAAAAGATATGCTGG+AGG | - | chr4_3:73841782-73841801 | Msa0662040:CDS | 35.0% | |
| ! | TTTTCCTCCAGCATATCTTT+TGG | + | chr4_3:73841789-73841808 | None:intergenic | 35.0% |
| ATGGTTTAGACCGAAAATGA+AGG | - | chr4_3:73841943-73841962 | Msa0662040:intron | 35.0% | |
| ! | TGCATATGCTCCTTCATTTT+CGG | + | chr4_3:73841956-73841975 | None:intergenic | 35.0% |
| TATGTCTAAATTGGATCCTC+TGG | - | chr4_3:73842080-73842099 | Msa0662040:CDS | 35.0% | |
| !!! | GTGAATTTTGTGTTGGTTTC+TGG | + | chr4_3:73841390-73841409 | None:intergenic | 35.0% |
| AAATTCACTTACAACACCGA+TGG | - | chr4_3:73841402-73841421 | Msa0662040:intron | 35.0% | |
| !! | GTTAAGTACTGAATCCATCA+TGG | + | chr4_3:73841449-73841468 | None:intergenic | 35.0% |
| CTAGAATGCATTTGCATGTA+CGG | - | chr4_3:73841555-73841574 | Msa0662040:intron | 35.0% | |
| TAGAATGCATTTGCATGTAC+GGG | - | chr4_3:73841556-73841575 | Msa0662040:intron | 35.0% | |
| ACATGATCGTCATATTGCTA+TGG | - | chr4_3:73841676-73841695 | Msa0662040:intron | 35.0% | |
| TTTACCAAAAGATATGCTGG+AGG | - | chr4_3:73841782-73841801 | Msa0662040:CDS | 35.0% | |
| ! | TTTTCCTCCAGCATATCTTT+TGG | + | chr4_3:73841789-73841808 | None:intergenic | 35.0% |
| ATGGTTTAGACCGAAAATGA+AGG | - | chr4_3:73841943-73841962 | Msa0662040:intron | 35.0% | |
| ! | TGCATATGCTCCTTCATTTT+CGG | + | chr4_3:73841956-73841975 | None:intergenic | 35.0% |
| TATGTCTAAATTGGATCCTC+TGG | - | chr4_3:73842080-73842099 | Msa0662040:CDS | 35.0% | |
| ! | GTAGTTGAAGGTATGACCAT+CGG | + | chr4_3:73841421-73841440 | None:intergenic | 40.0% |
| GGAGCATATGCATTATTGTG+TGG | - | chr4_3:73841964-73841983 | Msa0662040:CDS | 40.0% | |
| ACTTGCGAAAGTAAAAGCTC+AGG | - | chr4_3:73842009-73842028 | Msa0662040:CDS | 40.0% | |
| ! | AGTGAAGATCGACGTTTTGT+TGG | - | chr4_3:73842179-73842198 | Msa0662040:intron | 40.0% |
| ATAAAAGGACCTGATCACGA+AGG | + | chr4_3:73842218-73842237 | None:intergenic | 40.0% | |
| ! | TGGTTTGAATATGGCTTTGC+AGG | - | chr4_3:73842457-73842476 | Msa0662040:CDS | 40.0% |
| ! | TTTGCAGGCACAAGTTTTCA+GGG | - | chr4_3:73842472-73842491 | Msa0662040:CDS | 40.0% |
| ! | GTAGTTGAAGGTATGACCAT+CGG | + | chr4_3:73841421-73841440 | None:intergenic | 40.0% |
| GGAGCATATGCATTATTGTG+TGG | - | chr4_3:73841964-73841983 | Msa0662040:CDS | 40.0% | |
| ACTTGCGAAAGTAAAAGCTC+AGG | - | chr4_3:73842009-73842028 | Msa0662040:CDS | 40.0% | |
| ! | AGTGAAGATCGACGTTTTGT+TGG | - | chr4_3:73842179-73842198 | Msa0662040:intron | 40.0% |
| ATAAAAGGACCTGATCACGA+AGG | + | chr4_3:73842218-73842237 | None:intergenic | 40.0% | |
| ! | TGGTTTGAATATGGCTTTGC+AGG | - | chr4_3:73842457-73842476 | Msa0662040:CDS | 40.0% |
| ! | TTTGCAGGCACAAGTTTTCA+GGG | - | chr4_3:73842472-73842491 | Msa0662040:CDS | 40.0% |
| ! | GGCTATTTCAGCGAAGTTTC+CGG | + | chr4_3:73841346-73841365 | None:intergenic | 45.0% |
| TGCATGTACGGGTTTCATGT+CGG | - | chr4_3:73841567-73841586 | Msa0662040:intron | 45.0% | |
| TCGGACATTGAACACCTCTA+AGG | - | chr4_3:73841586-73841605 | Msa0662040:CDS | 45.0% | |
| CTCCTTGATGCGATCAAGAA+AGG | + | chr4_3:73841759-73841778 | None:intergenic | 45.0% | |
| CTTTCTTGATCGCATCAAGG+AGG | - | chr4_3:73841757-73841776 | Msa0662040:CDS | 45.0% | |
| TTGTGTGGAACATCCAGAAG+AGG | - | chr4_3:73841979-73841998 | Msa0662040:CDS | 45.0% | |
| !! | GCAAGTTTGCTAACCTCTTC+TGG | + | chr4_3:73841995-73842014 | None:intergenic | 45.0% |
| AACGGTCTGCACTTCAAACT+TGG | + | chr4_3:73842108-73842127 | None:intergenic | 45.0% | |
| AACTGACAACCTTCGTGATC+AGG | - | chr4_3:73842206-73842225 | Msa0662040:intron | 45.0% | |
| ! | CTTTGCAGGCACAAGTTTTC+AGG | - | chr4_3:73842471-73842490 | Msa0662040:CDS | 45.0% |
| ! | TTGCAGGCACAAGTTTTCAG+GGG | - | chr4_3:73842473-73842492 | Msa0662040:CDS | 45.0% |
| ! | GGCTATTTCAGCGAAGTTTC+CGG | + | chr4_3:73841346-73841365 | None:intergenic | 45.0% |
| TGCATGTACGGGTTTCATGT+CGG | - | chr4_3:73841567-73841586 | Msa0662040:intron | 45.0% | |
| TCGGACATTGAACACCTCTA+AGG | - | chr4_3:73841586-73841605 | Msa0662040:CDS | 45.0% | |
| CTCCTTGATGCGATCAAGAA+AGG | + | chr4_3:73841759-73841778 | None:intergenic | 45.0% | |
| CTTTCTTGATCGCATCAAGG+AGG | - | chr4_3:73841757-73841776 | Msa0662040:CDS | 45.0% | |
| TTGTGTGGAACATCCAGAAG+AGG | - | chr4_3:73841979-73841998 | Msa0662040:CDS | 45.0% | |
| !! | GCAAGTTTGCTAACCTCTTC+TGG | + | chr4_3:73841995-73842014 | None:intergenic | 45.0% |
| AACGGTCTGCACTTCAAACT+TGG | + | chr4_3:73842108-73842127 | None:intergenic | 45.0% | |
| AACTGACAACCTTCGTGATC+AGG | - | chr4_3:73842206-73842225 | Msa0662040:intron | 45.0% | |
| ! | CTTTGCAGGCACAAGTTTTC+AGG | - | chr4_3:73842471-73842490 | Msa0662040:CDS | 45.0% |
| ! | TTGCAGGCACAAGTTTTCAG+GGG | - | chr4_3:73842473-73842492 | Msa0662040:CDS | 45.0% |
| !! | TAATTTAGTTATATTATATA+TGG | + | chr4_3:73842376-73842395 | None:intergenic | 5.0% |
| !! | TAATTTAGTTATATTATATA+TGG | + | chr4_3:73842376-73842395 | None:intergenic | 5.0% |
| ! | ATATACAGCTTTGTGGCGCG+TGG | - | chr4_3:73841288-73841307 | Msa0662040:CDS | 50.0% |
| AGCGAAGTTTCCGGTGAAGT+TGG | + | chr4_3:73841337-73841356 | None:intergenic | 50.0% | |
| ! | GAGTCTTTGCAGGCATTGCA+AGG | + | chr4_3:73841367-73841386 | None:intergenic | 50.0% |
| ! | TGGTTTCTGGGAGTCTTTGC+AGG | + | chr4_3:73841377-73841396 | None:intergenic | 50.0% |
| ATCATGGGCGAGGTAGTTGA+AGG | + | chr4_3:73841433-73841452 | None:intergenic | 50.0% | |
| TTCAACTACCTCGCCCATGA+TGG | - | chr4_3:73841432-73841451 | Msa0662040:intron | 50.0% | |
| TACTGAATCCATCATGGGCG+AGG | + | chr4_3:73841443-73841462 | None:intergenic | 50.0% | |
| AGCTTACTGCGTTGTTGCTG+TGG | - | chr4_3:73841706-73841725 | Msa0662040:intron | 50.0% | |
| GGCCTTTCTTGATCGCATCA+AGG | - | chr4_3:73841754-73841773 | Msa0662040:CDS | 50.0% | |
| CACTTCAAACTTGGCTCCAG+AGG | + | chr4_3:73842099-73842118 | None:intergenic | 50.0% | |
| !! | TGCAGGCACAAGTTTTCAGG+GGG | - | chr4_3:73842474-73842493 | Msa0662040:CDS | 50.0% |
| ! | ATATACAGCTTTGTGGCGCG+TGG | - | chr4_3:73841288-73841307 | Msa0662040:CDS | 50.0% |
| AGCGAAGTTTCCGGTGAAGT+TGG | + | chr4_3:73841337-73841356 | None:intergenic | 50.0% | |
| ! | GAGTCTTTGCAGGCATTGCA+AGG | + | chr4_3:73841367-73841386 | None:intergenic | 50.0% |
| ! | TGGTTTCTGGGAGTCTTTGC+AGG | + | chr4_3:73841377-73841396 | None:intergenic | 50.0% |
| ATCATGGGCGAGGTAGTTGA+AGG | + | chr4_3:73841433-73841452 | None:intergenic | 50.0% | |
| TTCAACTACCTCGCCCATGA+TGG | - | chr4_3:73841432-73841451 | Msa0662040:intron | 50.0% | |
| TACTGAATCCATCATGGGCG+AGG | + | chr4_3:73841443-73841462 | None:intergenic | 50.0% | |
| AGCTTACTGCGTTGTTGCTG+TGG | - | chr4_3:73841706-73841725 | Msa0662040:intron | 50.0% | |
| GGCCTTTCTTGATCGCATCA+AGG | - | chr4_3:73841754-73841773 | Msa0662040:CDS | 50.0% | |
| CACTTCAAACTTGGCTCCAG+AGG | + | chr4_3:73842099-73842118 | None:intergenic | 50.0% | |
| !! | TGCAGGCACAAGTTTTCAGG+GGG | - | chr4_3:73842474-73842493 | Msa0662040:CDS | 50.0% |
| !! | TCCGGTGAAGTTGGTGTGCT+CGG | + | chr4_3:73841328-73841347 | None:intergenic | 55.0% |
| !! | GCACAAGTTTTCAGGGGGCA+GGG | - | chr4_3:73842479-73842498 | Msa0662040:CDS | 55.0% |
| !! | AAGTTTTCAGGGGGCAGGGA+GGG | - | chr4_3:73842483-73842502 | Msa0662040:CDS | 55.0% |
| !! | TCCGGTGAAGTTGGTGTGCT+CGG | + | chr4_3:73841328-73841347 | None:intergenic | 55.0% |
| !! | GCACAAGTTTTCAGGGGGCA+GGG | - | chr4_3:73842479-73842498 | Msa0662040:CDS | 55.0% |
| !! | AAGTTTTCAGGGGGCAGGGA+GGG | - | chr4_3:73842483-73842502 | Msa0662040:CDS | 55.0% |
| GCCGAGCACACCAACTTCAC+CGG | - | chr4_3:73841324-73841343 | Msa0662040:intron | 60.0% | |
| !! | GGCACAAGTTTTCAGGGGGC+AGG | - | chr4_3:73842478-73842497 | Msa0662040:CDS | 60.0% |
| !! | CAAGTTTTCAGGGGGCAGGG+AGG | - | chr4_3:73842482-73842501 | Msa0662040:CDS | 60.0% |
| GCCGAGCACACCAACTTCAC+CGG | - | chr4_3:73841324-73841343 | Msa0662040:intron | 60.0% | |
| !! | GGCACAAGTTTTCAGGGGGC+AGG | - | chr4_3:73842478-73842497 | Msa0662040:CDS | 60.0% |
| !! | CAAGTTTTCAGGGGGCAGGG+AGG | - | chr4_3:73842482-73842501 | Msa0662040:CDS | 60.0% |
| ! | CAGCTTTGTGGCGCGTGGCA+CGG | - | chr4_3:73841293-73841312 | Msa0662040:CDS | 65.0% |
| GGGGGCAGGGAGGGCAATTA+AGG | - | chr4_3:73842492-73842511 | Msa0662040:CDS | 65.0% | |
| ! | CAGCTTTGTGGCGCGTGGCA+CGG | - | chr4_3:73841293-73841312 | Msa0662040:CDS | 65.0% |
| GGGGGCAGGGAGGGCAATTA+AGG | - | chr4_3:73842492-73842511 | Msa0662040:CDS | 65.0% | |
| GGCGCGTGGCACGGTGATTC+TGG | - | chr4_3:73841302-73841321 | Msa0662040:intron | 70.0% | |
| GGCGCGTGGCACGGTGATTC+TGG | - | chr4_3:73841302-73841321 | Msa0662040:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 73841270 | 73842526 | 73841270 | ID=Msa0662040;Name=Msa0662040 |
| chr4_3 | mRNA | 73841270 | 73842526 | 73841270 | ID=Msa0662040-mRNA-1;Parent=Msa0662040;Name=Msa0662040-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.25|0.2|1|1|1|5|0|199 |
| chr4_3 | exon | 73842337 | 73842526 | 73842337 | ID=Msa0662040-mRNA-1:exon:22258;Parent=Msa0662040-mRNA-1 |
| chr4_3 | exon | 73841947 | 73842124 | 73841947 | ID=Msa0662040-mRNA-1:exon:22257;Parent=Msa0662040-mRNA-1 |
| chr4_3 | exon | 73841724 | 73841844 | 73841724 | ID=Msa0662040-mRNA-1:exon:22256;Parent=Msa0662040-mRNA-1 |
| chr4_3 | exon | 73841569 | 73841631 | 73841569 | ID=Msa0662040-mRNA-1:exon:22255;Parent=Msa0662040-mRNA-1 |
| chr4_3 | exon | 73841270 | 73841317 | 73841270 | ID=Msa0662040-mRNA-1:exon:22254;Parent=Msa0662040-mRNA-1 |
| chr4_3 | CDS | 73842337 | 73842526 | 73842337 | ID=Msa0662040-mRNA-1:cds;Parent=Msa0662040-mRNA-1 |
| chr4_3 | CDS | 73841947 | 73842124 | 73841947 | ID=Msa0662040-mRNA-1:cds;Parent=Msa0662040-mRNA-1 |
| chr4_3 | CDS | 73841724 | 73841844 | 73841724 | ID=Msa0662040-mRNA-1:cds;Parent=Msa0662040-mRNA-1 |
| chr4_3 | CDS | 73841569 | 73841631 | 73841569 | ID=Msa0662040-mRNA-1:cds;Parent=Msa0662040-mRNA-1 |
| chr4_3 | CDS | 73841270 | 73841317 | 73841270 | ID=Msa0662040-mRNA-1:cds;Parent=Msa0662040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
