Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105390 | XP_003622943.1 | 84.925 | 199 | 18 | 1 | 1 | 199 | 1 | 187 | 4.61e-118 | 344 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105390 | sp|P47192|VA722_ARATH | 65.327 | 199 | 57 | 1 | 1 | 199 | 1 | 187 | 2.91e-90 | 266 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105390 | G7L1A5 | 84.925 | 199 | 18 | 1 | 1 | 199 | 1 | 187 | 2.20e-118 | 344 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002300 | Msa1105390 | 0.913452 | 6.051466e-84 | -8.615850e-47 |
| Msa0095940 | Msa1105390 | 0.810926 | 9.041928e-51 | -8.615850e-47 |
| Msa0637460 | Msa1105390 | 0.805816 | 1.112093e-49 | -8.615850e-47 |
| Msa0662010 | Msa1105390 | 0.895871 | 6.347858e-76 | -8.615850e-47 |
| Msa0662040 | Msa1105390 | 0.865476 | 5.746662e-65 | -8.615850e-47 |
| Msa0833270 | Msa1105390 | 0.804708 | 1.897403e-49 | -8.615850e-47 |
| Msa0383900 | Msa1105390 | 0.802154 | 6.419355e-49 | -8.615850e-47 |
| Msa1030210 | Msa1105390 | 0.832795 | 7.709428e-56 | -8.615850e-47 |
| Msa1105360 | Msa1105390 | 0.935473 | 8.026876e-97 | -8.615850e-47 |
| Msa1105390 | Msa1404050 | 0.813314 | 2.725283e-51 | -8.615850e-47 |
| Msa1105390 | Msa1413800 | 0.803403 | 3.544879e-49 | -8.615850e-47 |
| Msa1105390 | Msa1436090 | 0.800062 | 1.718458e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105390 | MtrunA17_Chr7g0237521 | 84.925 | 199 | 18 | 1 | 1 | 199 | 1 | 187 | 4.24e-122 | 344 |
| Msa1105390 | MtrunA17_Chr4g0010271 | 67.337 | 199 | 53 | 1 | 1 | 199 | 1 | 187 | 7.43e-95 | 275 |
| Msa1105390 | MtrunA17_Chr1g0169861 | 61.307 | 199 | 65 | 1 | 1 | 199 | 51 | 237 | 8.45e-89 | 261 |
| Msa1105390 | MtrunA17_Chr7g0237561 | 63.317 | 199 | 61 | 1 | 1 | 199 | 1 | 187 | 5.07e-88 | 258 |
| Msa1105390 | MtrunA17_Chr4g0043521 | 58.883 | 197 | 69 | 1 | 3 | 199 | 5 | 189 | 1.53e-83 | 246 |
| Msa1105390 | MtrunA17_Chr2g0291651 | 59.391 | 197 | 68 | 1 | 3 | 199 | 7 | 191 | 2.76e-83 | 246 |
| Msa1105390 | MtrunA17_Chr2g0296021 | 58.794 | 199 | 70 | 1 | 1 | 199 | 1 | 187 | 3.03e-81 | 241 |
| Msa1105390 | MtrunA17_Chr1g0210521 | 46.789 | 218 | 85 | 3 | 1 | 199 | 1 | 206 | 9.63e-67 | 204 |
| Msa1105390 | MtrunA17_Chr1g0169851 | 53.103 | 145 | 53 | 1 | 70 | 199 | 9 | 153 | 1.60e-50 | 160 |
| Msa1105390 | MtrunA17_Chr4g0010211 | 68.224 | 107 | 34 | 0 | 76 | 182 | 3 | 109 | 7.47e-49 | 154 |
| Msa1105390 | MtrunA17_Chr4g0026121 | 30.612 | 196 | 121 | 4 | 5 | 199 | 2 | 183 | 8.02e-30 | 109 |
| Msa1105390 | MtrunA17_Chr5g0441741 | 34.375 | 192 | 111 | 4 | 6 | 196 | 3 | 180 | 1.25e-29 | 109 |
| Msa1105390 | MtrunA17_Chr4g0064371 | 30.256 | 195 | 125 | 6 | 6 | 199 | 3 | 187 | 3.65e-21 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105390 | AT2G33120.2 | 65.829 | 199 | 64 | 2 | 1 | 199 | 1 | 195 | 7.89e-93 | 271 |
| Msa1105390 | AT2G33120.1 | 65.327 | 199 | 57 | 1 | 1 | 199 | 1 | 187 | 2.96e-91 | 266 |
| Msa1105390 | AT1G04750.1 | 64.824 | 199 | 58 | 1 | 1 | 199 | 1 | 187 | 7.66e-91 | 265 |
| Msa1105390 | AT1G04760.2 | 62.312 | 199 | 63 | 1 | 1 | 199 | 1 | 187 | 5.15e-90 | 263 |
| Msa1105390 | AT1G04760.1 | 62.312 | 199 | 63 | 1 | 1 | 199 | 1 | 187 | 5.15e-90 | 263 |
| Msa1105390 | AT2G32670.1 | 62.312 | 199 | 63 | 1 | 1 | 199 | 66 | 252 | 4.30e-88 | 261 |
| Msa1105390 | AT4G15780.1 | 56.701 | 194 | 71 | 2 | 1 | 193 | 1 | 182 | 2.22e-75 | 225 |
| Msa1105390 | AT2G33110.1 | 53.535 | 198 | 76 | 2 | 1 | 198 | 1 | 182 | 5.18e-68 | 207 |
| Msa1105390 | AT2G33110.2 | 57.471 | 174 | 62 | 1 | 1 | 174 | 1 | 162 | 3.64e-67 | 204 |
| Msa1105390 | AT3G54300.3 | 46.818 | 220 | 82 | 3 | 1 | 199 | 1 | 206 | 4.60e-67 | 206 |
| Msa1105390 | AT3G54300.2 | 46.818 | 220 | 82 | 3 | 1 | 199 | 1 | 206 | 4.60e-67 | 206 |
| Msa1105390 | AT3G54300.1 | 46.818 | 220 | 82 | 3 | 1 | 199 | 1 | 206 | 4.60e-67 | 206 |
| Msa1105390 | AT1G04750.2 | 66.055 | 109 | 37 | 0 | 91 | 199 | 1 | 109 | 4.75e-47 | 151 |
| Msa1105390 | AT1G04750.4 | 66.055 | 109 | 37 | 0 | 91 | 199 | 1 | 109 | 4.75e-47 | 151 |
| Msa1105390 | AT1G04750.3 | 66.055 | 109 | 37 | 0 | 91 | 199 | 1 | 109 | 4.75e-47 | 151 |
| Msa1105390 | AT5G11150.1 | 32.995 | 197 | 116 | 4 | 5 | 199 | 2 | 184 | 5.84e-30 | 110 |
| Msa1105390 | AT5G11150.2 | 32.995 | 197 | 116 | 4 | 5 | 199 | 2 | 184 | 1.01e-29 | 110 |
| Msa1105390 | AT5G22360.1 | 30.964 | 197 | 120 | 5 | 5 | 199 | 2 | 184 | 1.53e-28 | 106 |
| Msa1105390 | AT4G32150.1 | 31.606 | 193 | 117 | 4 | 5 | 196 | 2 | 180 | 1.98e-26 | 101 |
| Msa1105390 | AT2G25340.1 | 30.851 | 188 | 115 | 4 | 5 | 191 | 2 | 175 | 6.05e-25 | 97.4 |
| Msa1105390 | AT2G33120.3 | 61.111 | 54 | 21 | 0 | 146 | 199 | 52 | 105 | 9.48e-14 | 65.9 |
Find 35 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGCTTGAACAAAGAATT+TGG | 0.149954 | 7_3:+43828184 | Msa1105390:CDS |
| GCAAGTTTGCTAACCTCTTC+TGG | 0.229459 | 7_3:-43828349 | None:intergenic |
| GGCTATTTCAGCGAAGTTTC+CGG | 0.268195 | 7_3:-43827665 | None:intergenic |
| TGGTTTCTGGGAGTCTTTGC+AGG | 0.286531 | 7_3:-43827696 | None:intergenic |
| AGCAAACTTGCGAAAGTAAA+AGG | 0.308160 | 7_3:+43828361 | Msa1105390:CDS |
| GGCGCGTGGCACGGTGATTC+TGG | 0.320729 | 7_3:+43827624 | Msa1105390:CDS |
| TCCGGTGAAGTTGGTGTGCT+CGG | 0.407070 | 7_3:-43827647 | None:intergenic |
| AACTGACAACCTTCGTGATC+AGG | 0.429765 | 7_3:+43828563 | Msa1105390:CDS |
| AAAGCTTGAACAAAGAATTT+GGG | 0.431429 | 7_3:+43828185 | Msa1105390:CDS |
| ATCACTTATACACAGCTTTG+TGG | 0.441170 | 7_3:+43827603 | Msa1105390:CDS |
| CTCCTTGATGCGATCAAGAA+AGG | 0.482399 | 7_3:-43828113 | None:intergenic |
| GCCGAGCACACCAACTTCAC+CGG | 0.518367 | 7_3:+43827646 | Msa1105390:CDS |
| CAGCTTTGTGGCGCGTGGCA+CGG | 0.518833 | 7_3:+43827615 | Msa1105390:CDS |
| AGCGAAGTTTCCGGTGAAGT+TGG | 0.520827 | 7_3:-43827656 | None:intergenic |
| TCAAGTTCTAGATGTTATGT+TGG | 0.523120 | 7_3:+43828393 | Msa1105390:CDS |
| GGCCTTTCTTGATCGCATCA+AGG | 0.526618 | 7_3:+43828111 | Msa1105390:CDS |
| AGCTTACTGCGTTGTTGCTG+TGG | 0.527710 | 7_3:+43828063 | Msa1105390:CDS |
| TTCAACTACCTCGCCCATGA+TGG | 0.533919 | 7_3:+43827754 | Msa1105390:CDS |
| GTTAAGTACTGAATCCATCA+TGG | 0.534501 | 7_3:-43827768 | None:intergenic |
| ATCATGGGCGAGGTAGTTGA+AGG | 0.542753 | 7_3:-43827752 | None:intergenic |
| AAGGAGCATATGCAATATTG+TGG | 0.545400 | 7_3:+43828319 | Msa1105390:CDS |
| ACTTGCGAAAGTAAAAGGTC+AGG | 0.568866 | 7_3:+43828366 | Msa1105390:CDS |
| AGGAGCATATGCAATATTGT+GGG | 0.570909 | 7_3:+43828320 | Msa1105390:CDS |
| GAGTCTTTGCAGGCATTGCA+AGG | 0.572287 | 7_3:-43827686 | None:intergenic |
| TACTGAATCCATCATGGGCG+AGG | 0.576277 | 7_3:-43827762 | None:intergenic |
| ACATGATCGTCATATTGCTA+TGG | 0.577485 | 7_3:+43828033 | Msa1105390:CDS |
| ATACACAGCTTTGTGGCGCG+TGG | 0.584746 | 7_3:+43827610 | Msa1105390:CDS |
| ATGGTTTAGACCGAAAATGA+AGG | 0.599090 | 7_3:+43828300 | Msa1105390:intron |
| TTAAGTACTGAATCCATCAT+GGG | 0.623193 | 7_3:-43827767 | None:intergenic |
| GTAGTTGAAGGTATGACCAT+CGG | 0.631667 | 7_3:-43827740 | None:intergenic |
| TTGTGGGGAACATCCAGAAG+AGG | 0.639703 | 7_3:+43828336 | Msa1105390:CDS |
| CTTTCTTGATCGCATCAAGG+AGG | 0.649404 | 7_3:+43828114 | Msa1105390:CDS |
| AAATTCACTTACAACACCGA+TGG | 0.653817 | 7_3:+43827724 | Msa1105390:CDS |
| GGAGCATATGCAATATTGTG+GGG | 0.671747 | 7_3:+43828321 | Msa1105390:CDS |
| ATAAAAGGACCTGATCACGA+AGG | 0.753478 | 7_3:-43828572 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTCTCTTTTAATCTAA+CGG | - | chr7_3:43828483-43828502 | None:intergenic | 15.0% |
| !!! | ATTTTATTTGTTTTATATGC+AGG | + | chr7_3:43828500-43828519 | Msa1105390:intron | 15.0% |
| !! | TTTATGTATGAACAAATAAA+AGG | - | chr7_3:43828590-43828609 | None:intergenic | 15.0% |
| !! | TTATATTATATATGGTTACT+AGG | - | chr7_3:43828725-43828744 | None:intergenic | 15.0% |
| !!! | AATTTTCTCTTTTAATCTAA+CGG | - | chr7_3:43828483-43828502 | None:intergenic | 15.0% |
| !!! | ATTTTATTTGTTTTATATGC+AGG | + | chr7_3:43828500-43828519 | Msa1105390:intron | 15.0% |
| !! | TTTATGTATGAACAAATAAA+AGG | - | chr7_3:43828590-43828609 | None:intergenic | 15.0% |
| !! | TTATATTATATATGGTTACT+AGG | - | chr7_3:43828725-43828744 | None:intergenic | 15.0% |
| !!! | GTTTTTTTATTGTATATGCA+TGG | + | chr7_3:43828281-43828300 | Msa1105390:intron | 20.0% |
| !! | AGTTATATATGTAACTGATA+TGG | + | chr7_3:43828798-43828817 | Msa1105390:intron | 20.0% |
| !!! | GTTTTTTTATTGTATATGCA+TGG | + | chr7_3:43828281-43828300 | Msa1105390:intron | 20.0% |
| !! | AGTTATATATGTAACTGATA+TGG | + | chr7_3:43828798-43828817 | Msa1105390:intron | 20.0% |
| ! | CAAATCATAAATTTCCTTAG+AGG | - | chr7_3:43827960-43827979 | None:intergenic | 25.0% |
| ! | AAAAGCTTGAACAAAGAATT+TGG | + | chr7_3:43828184-43828203 | Msa1105390:CDS | 25.0% |
| ! | AAAGCTTGAACAAAGAATTT+GGG | + | chr7_3:43828185-43828204 | Msa1105390:CDS | 25.0% |
| !!! | TATGTTGGAAAATTTTGATC+AGG | + | chr7_3:43828408-43828427 | Msa1105390:CDS | 25.0% |
| ! | AGGTATGTATATGTCTAAAT+TGG | + | chr7_3:43828428-43828447 | Msa1105390:intron | 25.0% |
| ! | ACATAAACTTTGTGTTCATT+TGG | + | chr7_3:43828603-43828622 | Msa1105390:intron | 25.0% |
| ! | ATGTGAGTCATTTATTTCAA+AGG | - | chr7_3:43828675-43828694 | None:intergenic | 25.0% |
| !! | TTTGAAATAAATGACTCACA+TGG | + | chr7_3:43828674-43828693 | Msa1105390:intron | 25.0% |
| ! | ATTATATATGGTTACTAGGA+TGG | - | chr7_3:43828721-43828740 | None:intergenic | 25.0% |
| ! | TAACTGATATGGTTTGAATA+TGG | + | chr7_3:43828809-43828828 | Msa1105390:intron | 25.0% |
| ! | CAAATCATAAATTTCCTTAG+AGG | - | chr7_3:43827960-43827979 | None:intergenic | 25.0% |
| ! | AAAAGCTTGAACAAAGAATT+TGG | + | chr7_3:43828184-43828203 | Msa1105390:CDS | 25.0% |
| ! | AAAGCTTGAACAAAGAATTT+GGG | + | chr7_3:43828185-43828204 | Msa1105390:CDS | 25.0% |
| !!! | TATGTTGGAAAATTTTGATC+AGG | + | chr7_3:43828408-43828427 | Msa1105390:CDS | 25.0% |
| ! | AGGTATGTATATGTCTAAAT+TGG | + | chr7_3:43828428-43828447 | Msa1105390:intron | 25.0% |
| ! | ACATAAACTTTGTGTTCATT+TGG | + | chr7_3:43828603-43828622 | Msa1105390:intron | 25.0% |
| ! | ATGTGAGTCATTTATTTCAA+AGG | - | chr7_3:43828675-43828694 | None:intergenic | 25.0% |
| !! | TTTGAAATAAATGACTCACA+TGG | + | chr7_3:43828674-43828693 | Msa1105390:intron | 25.0% |
| ! | ATTATATATGGTTACTAGGA+TGG | - | chr7_3:43828721-43828740 | None:intergenic | 25.0% |
| ! | TAACTGATATGGTTTGAATA+TGG | + | chr7_3:43828809-43828828 | Msa1105390:intron | 25.0% |
| !!! | TGAATTTTGTGTTGGTTTCT+GGG | - | chr7_3:43827711-43827730 | None:intergenic | 30.0% |
| ! | GTTGTAAGTGAATTTTGTGT+TGG | - | chr7_3:43827719-43827738 | None:intergenic | 30.0% |
| !! | TTAAGTACTGAATCCATCAT+GGG | - | chr7_3:43827770-43827789 | None:intergenic | 30.0% |
| ATGTGAATATGCGATATAAG+AGG | + | chr7_3:43827846-43827865 | Msa1105390:intron | 30.0% | |
| ATCAAATGCATTTGCATGTA+CGG | + | chr7_3:43827912-43827931 | Msa1105390:intron | 30.0% | |
| ! | TTTTGATCGCAATATTGCTA+TGG | + | chr7_3:43828090-43828109 | Msa1105390:CDS | 30.0% |
| ! | GATTTTACCAAAAGATATGC+TGG | + | chr7_3:43828136-43828155 | Msa1105390:CDS | 30.0% |
| ! | TTTTCTTCCAGCATATCTTT+TGG | - | chr7_3:43828146-43828165 | None:intergenic | 30.0% |
| !! | TCAAGTTCTAGATGTTATGT+TGG | + | chr7_3:43828393-43828412 | Msa1105390:CDS | 30.0% |
| !!! | TGAATTTTGTGTTGGTTTCT+GGG | - | chr7_3:43827711-43827730 | None:intergenic | 30.0% |
| ! | GTTGTAAGTGAATTTTGTGT+TGG | - | chr7_3:43827719-43827738 | None:intergenic | 30.0% |
| !! | TTAAGTACTGAATCCATCAT+GGG | - | chr7_3:43827770-43827789 | None:intergenic | 30.0% |
| ATGTGAATATGCGATATAAG+AGG | + | chr7_3:43827846-43827865 | Msa1105390:intron | 30.0% | |
| ATCAAATGCATTTGCATGTA+CGG | + | chr7_3:43827912-43827931 | Msa1105390:intron | 30.0% | |
| ! | TTTTGATCGCAATATTGCTA+TGG | + | chr7_3:43828090-43828109 | Msa1105390:CDS | 30.0% |
| ! | GATTTTACCAAAAGATATGC+TGG | + | chr7_3:43828136-43828155 | Msa1105390:CDS | 30.0% |
| ! | TTTTCTTCCAGCATATCTTT+TGG | - | chr7_3:43828146-43828165 | None:intergenic | 30.0% |
| !! | TCAAGTTCTAGATGTTATGT+TGG | + | chr7_3:43828393-43828412 | Msa1105390:CDS | 30.0% |
| ATCACTTATACACAGCTTTG+TGG | + | chr7_3:43827603-43827622 | Msa1105390:CDS | 35.0% | |
| !!! | GTGAATTTTGTGTTGGTTTC+TGG | - | chr7_3:43827712-43827731 | None:intergenic | 35.0% |
| AAATTCACTTACAACACCGA+TGG | + | chr7_3:43827724-43827743 | Msa1105390:CDS | 35.0% | |
| !! | GTTAAGTACTGAATCCATCA+TGG | - | chr7_3:43827771-43827790 | None:intergenic | 35.0% |
| TCAAATGCATTTGCATGTAC+GGG | + | chr7_3:43827913-43827932 | Msa1105390:intron | 35.0% | |
| ACATGATCGTCATATTGCTA+TGG | + | chr7_3:43828033-43828052 | Msa1105390:CDS | 35.0% | |
| ATGGTTTAGACCGAAAATGA+AGG | + | chr7_3:43828300-43828319 | Msa1105390:intron | 35.0% | |
| ! | TGCATATGCTCCTTCATTTT+CGG | - | chr7_3:43828313-43828332 | None:intergenic | 35.0% |
| ! | AAGGAGCATATGCAATATTG+TGG | + | chr7_3:43828319-43828338 | Msa1105390:CDS | 35.0% |
| ! | AGGAGCATATGCAATATTGT+GGG | + | chr7_3:43828320-43828339 | Msa1105390:CDS | 35.0% |
| AGCAAACTTGCGAAAGTAAA+AGG | + | chr7_3:43828361-43828380 | Msa1105390:CDS | 35.0% | |
| TATGTCTAAATTGGATCCTC+TGG | + | chr7_3:43828437-43828456 | Msa1105390:intron | 35.0% | |
| ATCACTTATACACAGCTTTG+TGG | + | chr7_3:43827603-43827622 | Msa1105390:CDS | 35.0% | |
| !!! | GTGAATTTTGTGTTGGTTTC+TGG | - | chr7_3:43827712-43827731 | None:intergenic | 35.0% |
| AAATTCACTTACAACACCGA+TGG | + | chr7_3:43827724-43827743 | Msa1105390:CDS | 35.0% | |
| !! | GTTAAGTACTGAATCCATCA+TGG | - | chr7_3:43827771-43827790 | None:intergenic | 35.0% |
| TCAAATGCATTTGCATGTAC+GGG | + | chr7_3:43827913-43827932 | Msa1105390:intron | 35.0% | |
| ACATGATCGTCATATTGCTA+TGG | + | chr7_3:43828033-43828052 | Msa1105390:CDS | 35.0% | |
| ATGGTTTAGACCGAAAATGA+AGG | + | chr7_3:43828300-43828319 | Msa1105390:intron | 35.0% | |
| ! | TGCATATGCTCCTTCATTTT+CGG | - | chr7_3:43828313-43828332 | None:intergenic | 35.0% |
| ! | AAGGAGCATATGCAATATTG+TGG | + | chr7_3:43828319-43828338 | Msa1105390:CDS | 35.0% |
| ! | AGGAGCATATGCAATATTGT+GGG | + | chr7_3:43828320-43828339 | Msa1105390:CDS | 35.0% |
| AGCAAACTTGCGAAAGTAAA+AGG | + | chr7_3:43828361-43828380 | Msa1105390:CDS | 35.0% | |
| TATGTCTAAATTGGATCCTC+TGG | + | chr7_3:43828437-43828456 | Msa1105390:intron | 35.0% | |
| ! | GTAGTTGAAGGTATGACCAT+CGG | - | chr7_3:43827743-43827762 | None:intergenic | 40.0% |
| GGAGCATATGCAATATTGTG+GGG | + | chr7_3:43828321-43828340 | Msa1105390:CDS | 40.0% | |
| ACTTGCGAAAGTAAAAGGTC+AGG | + | chr7_3:43828366-43828385 | Msa1105390:CDS | 40.0% | |
| ! | AGTGAAGATCGACGTTTTGA+TGG | + | chr7_3:43828536-43828555 | Msa1105390:CDS | 40.0% |
| ATAAAAGGACCTGATCACGA+AGG | - | chr7_3:43828575-43828594 | None:intergenic | 40.0% | |
| ! | TGGTTTGAATATGGCTTTGC+AGG | + | chr7_3:43828818-43828837 | Msa1105390:intron | 40.0% |
| ! | TTTGCAGGCACAAGTTTTCA+GGG | + | chr7_3:43828833-43828852 | Msa1105390:intron | 40.0% |
| ! | GTAGTTGAAGGTATGACCAT+CGG | - | chr7_3:43827743-43827762 | None:intergenic | 40.0% |
| GGAGCATATGCAATATTGTG+GGG | + | chr7_3:43828321-43828340 | Msa1105390:CDS | 40.0% | |
| ACTTGCGAAAGTAAAAGGTC+AGG | + | chr7_3:43828366-43828385 | Msa1105390:CDS | 40.0% | |
| ! | AGTGAAGATCGACGTTTTGA+TGG | + | chr7_3:43828536-43828555 | Msa1105390:CDS | 40.0% |
| ATAAAAGGACCTGATCACGA+AGG | - | chr7_3:43828575-43828594 | None:intergenic | 40.0% | |
| ! | TGGTTTGAATATGGCTTTGC+AGG | + | chr7_3:43828818-43828837 | Msa1105390:intron | 40.0% |
| ! | TTTGCAGGCACAAGTTTTCA+GGG | + | chr7_3:43828833-43828852 | Msa1105390:intron | 40.0% |
| ! | GGCTATTTCAGCGAAGTTTC+CGG | - | chr7_3:43827668-43827687 | None:intergenic | 45.0% |
| TGCATGTACGGGTTTCATGT+CGG | + | chr7_3:43827924-43827943 | Msa1105390:intron | 45.0% | |
| TCGGACATTGAACACCTCTA+AGG | + | chr7_3:43827943-43827962 | Msa1105390:intron | 45.0% | |
| CTCCTTGATGCGATCAAGAA+AGG | - | chr7_3:43828116-43828135 | None:intergenic | 45.0% | |
| CTTTCTTGATCGCATCAAGG+AGG | + | chr7_3:43828114-43828133 | Msa1105390:CDS | 45.0% | |
| !! | GCAAGTTTGCTAACCTCTTC+TGG | - | chr7_3:43828352-43828371 | None:intergenic | 45.0% |
| AACGGTCTGCACTTCAAACT+TGG | - | chr7_3:43828465-43828484 | None:intergenic | 45.0% | |
| AACTGACAACCTTCGTGATC+AGG | + | chr7_3:43828563-43828582 | Msa1105390:CDS | 45.0% | |
| ! | CTTTGCAGGCACAAGTTTTC+AGG | + | chr7_3:43828832-43828851 | Msa1105390:intron | 45.0% |
| ! | TTGCAGGCACAAGTTTTCAG+GGG | + | chr7_3:43828834-43828853 | Msa1105390:intron | 45.0% |
| ! | GGCTATTTCAGCGAAGTTTC+CGG | - | chr7_3:43827668-43827687 | None:intergenic | 45.0% |
| TGCATGTACGGGTTTCATGT+CGG | + | chr7_3:43827924-43827943 | Msa1105390:intron | 45.0% | |
| TCGGACATTGAACACCTCTA+AGG | + | chr7_3:43827943-43827962 | Msa1105390:intron | 45.0% | |
| CTCCTTGATGCGATCAAGAA+AGG | - | chr7_3:43828116-43828135 | None:intergenic | 45.0% | |
| CTTTCTTGATCGCATCAAGG+AGG | + | chr7_3:43828114-43828133 | Msa1105390:CDS | 45.0% | |
| !! | GCAAGTTTGCTAACCTCTTC+TGG | - | chr7_3:43828352-43828371 | None:intergenic | 45.0% |
| AACGGTCTGCACTTCAAACT+TGG | - | chr7_3:43828465-43828484 | None:intergenic | 45.0% | |
| AACTGACAACCTTCGTGATC+AGG | + | chr7_3:43828563-43828582 | Msa1105390:CDS | 45.0% | |
| ! | CTTTGCAGGCACAAGTTTTC+AGG | + | chr7_3:43828832-43828851 | Msa1105390:intron | 45.0% |
| ! | TTGCAGGCACAAGTTTTCAG+GGG | + | chr7_3:43828834-43828853 | Msa1105390:intron | 45.0% |
| !! | TAATTTAGTTATATTATATA+TGG | - | chr7_3:43828733-43828752 | None:intergenic | 5.0% |
| !! | TAATTTAGTTATATTATATA+TGG | - | chr7_3:43828733-43828752 | None:intergenic | 5.0% |
| AGCGAAGTTTCCGGTGAAGT+TGG | - | chr7_3:43827659-43827678 | None:intergenic | 50.0% | |
| ! | GAGTCTTTGCAGGCATTGCA+AGG | - | chr7_3:43827689-43827708 | None:intergenic | 50.0% |
| ! | TGGTTTCTGGGAGTCTTTGC+AGG | - | chr7_3:43827699-43827718 | None:intergenic | 50.0% |
| ATCATGGGCGAGGTAGTTGA+AGG | - | chr7_3:43827755-43827774 | None:intergenic | 50.0% | |
| TTCAACTACCTCGCCCATGA+TGG | + | chr7_3:43827754-43827773 | Msa1105390:CDS | 50.0% | |
| TACTGAATCCATCATGGGCG+AGG | - | chr7_3:43827765-43827784 | None:intergenic | 50.0% | |
| AGCTTACTGCGTTGTTGCTG+TGG | + | chr7_3:43828063-43828082 | Msa1105390:CDS | 50.0% | |
| GGCCTTTCTTGATCGCATCA+AGG | + | chr7_3:43828111-43828130 | Msa1105390:CDS | 50.0% | |
| TTGTGGGGAACATCCAGAAG+AGG | + | chr7_3:43828336-43828355 | Msa1105390:CDS | 50.0% | |
| CACTTCAAACTTGGCTCCAG+AGG | - | chr7_3:43828456-43828475 | None:intergenic | 50.0% | |
| !! | TGCAGGCACAAGTTTTCAGG+GGG | + | chr7_3:43828835-43828854 | Msa1105390:intron | 50.0% |
| AGCGAAGTTTCCGGTGAAGT+TGG | - | chr7_3:43827659-43827678 | None:intergenic | 50.0% | |
| ! | GAGTCTTTGCAGGCATTGCA+AGG | - | chr7_3:43827689-43827708 | None:intergenic | 50.0% |
| ! | TGGTTTCTGGGAGTCTTTGC+AGG | - | chr7_3:43827699-43827718 | None:intergenic | 50.0% |
| ATCATGGGCGAGGTAGTTGA+AGG | - | chr7_3:43827755-43827774 | None:intergenic | 50.0% | |
| TTCAACTACCTCGCCCATGA+TGG | + | chr7_3:43827754-43827773 | Msa1105390:CDS | 50.0% | |
| TACTGAATCCATCATGGGCG+AGG | - | chr7_3:43827765-43827784 | None:intergenic | 50.0% | |
| AGCTTACTGCGTTGTTGCTG+TGG | + | chr7_3:43828063-43828082 | Msa1105390:CDS | 50.0% | |
| GGCCTTTCTTGATCGCATCA+AGG | + | chr7_3:43828111-43828130 | Msa1105390:CDS | 50.0% | |
| TTGTGGGGAACATCCAGAAG+AGG | + | chr7_3:43828336-43828355 | Msa1105390:CDS | 50.0% | |
| CACTTCAAACTTGGCTCCAG+AGG | - | chr7_3:43828456-43828475 | None:intergenic | 50.0% | |
| !! | TGCAGGCACAAGTTTTCAGG+GGG | + | chr7_3:43828835-43828854 | Msa1105390:intron | 50.0% |
| ! | ATACACAGCTTTGTGGCGCG+TGG | + | chr7_3:43827610-43827629 | Msa1105390:CDS | 55.0% |
| !! | TCCGGTGAAGTTGGTGTGCT+CGG | - | chr7_3:43827650-43827669 | None:intergenic | 55.0% |
| !! | GCACAAGTTTTCAGGGGGCA+GGG | + | chr7_3:43828840-43828859 | Msa1105390:CDS | 55.0% |
| !! | AAGTTTTCAGGGGGCAGGGA+GGG | + | chr7_3:43828844-43828863 | Msa1105390:CDS | 55.0% |
| ! | ATACACAGCTTTGTGGCGCG+TGG | + | chr7_3:43827610-43827629 | Msa1105390:CDS | 55.0% |
| !! | TCCGGTGAAGTTGGTGTGCT+CGG | - | chr7_3:43827650-43827669 | None:intergenic | 55.0% |
| !! | GCACAAGTTTTCAGGGGGCA+GGG | + | chr7_3:43828840-43828859 | Msa1105390:CDS | 55.0% |
| !! | AAGTTTTCAGGGGGCAGGGA+GGG | + | chr7_3:43828844-43828863 | Msa1105390:CDS | 55.0% |
| GCCGAGCACACCAACTTCAC+CGG | + | chr7_3:43827646-43827665 | Msa1105390:CDS | 60.0% | |
| !! | GGCACAAGTTTTCAGGGGGC+AGG | + | chr7_3:43828839-43828858 | Msa1105390:intron | 60.0% |
| !! | CAAGTTTTCAGGGGGCAGGG+AGG | + | chr7_3:43828843-43828862 | Msa1105390:CDS | 60.0% |
| GCCGAGCACACCAACTTCAC+CGG | + | chr7_3:43827646-43827665 | Msa1105390:CDS | 60.0% | |
| !! | GGCACAAGTTTTCAGGGGGC+AGG | + | chr7_3:43828839-43828858 | Msa1105390:intron | 60.0% |
| !! | CAAGTTTTCAGGGGGCAGGG+AGG | + | chr7_3:43828843-43828862 | Msa1105390:CDS | 60.0% |
| ! | CAGCTTTGTGGCGCGTGGCA+CGG | + | chr7_3:43827615-43827634 | Msa1105390:CDS | 65.0% |
| GGGGGCAGGGAGGGCAATTA+AGG | + | chr7_3:43828853-43828872 | Msa1105390:CDS | 65.0% | |
| ! | CAGCTTTGTGGCGCGTGGCA+CGG | + | chr7_3:43827615-43827634 | Msa1105390:CDS | 65.0% |
| GGGGGCAGGGAGGGCAATTA+AGG | + | chr7_3:43828853-43828872 | Msa1105390:CDS | 65.0% | |
| GGCGCGTGGCACGGTGATTC+TGG | + | chr7_3:43827624-43827643 | Msa1105390:CDS | 70.0% | |
| GGCGCGTGGCACGGTGATTC+TGG | + | chr7_3:43827624-43827643 | Msa1105390:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 43827592 | 43828887 | 43827592 | ID=Msa1105390;Name=Msa1105390 |
| chr7_3 | mRNA | 43827592 | 43828887 | 43827592 | ID=Msa1105390-mRNA-1;Parent=Msa1105390;Name=Msa1105390-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0.25|0.2|1|1|1|5|0|199 |
| chr7_3 | exon | 43827592 | 43827781 | 43827592 | ID=Msa1105390-mRNA-1:exon:9014;Parent=Msa1105390-mRNA-1 |
| chr7_3 | exon | 43828029 | 43828206 | 43828029 | ID=Msa1105390-mRNA-1:exon:9015;Parent=Msa1105390-mRNA-1 |
| chr7_3 | exon | 43828309 | 43828429 | 43828309 | ID=Msa1105390-mRNA-1:exon:9016;Parent=Msa1105390-mRNA-1 |
| chr7_3 | exon | 43828522 | 43828584 | 43828522 | ID=Msa1105390-mRNA-1:exon:9017;Parent=Msa1105390-mRNA-1 |
| chr7_3 | exon | 43828840 | 43828887 | 43828840 | ID=Msa1105390-mRNA-1:exon:9018;Parent=Msa1105390-mRNA-1 |
| chr7_3 | CDS | 43827592 | 43827781 | 43827592 | ID=Msa1105390-mRNA-1:cds;Parent=Msa1105390-mRNA-1 |
| chr7_3 | CDS | 43828029 | 43828206 | 43828029 | ID=Msa1105390-mRNA-1:cds;Parent=Msa1105390-mRNA-1 |
| chr7_3 | CDS | 43828309 | 43828429 | 43828309 | ID=Msa1105390-mRNA-1:cds;Parent=Msa1105390-mRNA-1 |
| chr7_3 | CDS | 43828522 | 43828584 | 43828522 | ID=Msa1105390-mRNA-1:cds;Parent=Msa1105390-mRNA-1 |
| chr7_3 | CDS | 43828840 | 43828887 | 43828840 | ID=Msa1105390-mRNA-1:cds;Parent=Msa1105390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
