AlfalfaGEDB | Msa1105360

M. sativa cultivar zhongmu-4 / Msa1105360

KEGG: K08511|K08515
GO: GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0097708 GO:0098796
PFAM: PF13774.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1105360	XP_003622943.1	86.432	199	15	1	1	199	1	187	2.05e-121	352

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1105360	sp\|P47192\|VA722_ARATH	66.332	199	55	1	1	199	1	187	7.17e-93	273

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1105360	G7L1A5	86.432	199	15	1	1	199	1	187	9.78e-122	352

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002300	Msa1105360	0.966426	6.635614e-126	-8.615850e-47
Msa0034540	Msa1105360	0.800027	1.746861e-48	-8.615850e-47
Msa0107830	Msa1105360	0.801175	1.019136e-48	-8.615850e-47
Msa0126430	Msa1105360	0.808099	3.657243e-50	-8.615850e-47
Msa0150620	Msa1105360	0.820500	6.639666e-53	-8.615850e-47
Msa0185100	Msa1105360	0.803607	3.215905e-49	-8.615850e-47
Msa0204170	Msa1105360	0.804200	2.421254e-49	-8.615850e-47
Msa0218090	Msa1105360	0.800999	1.107489e-48	-8.615850e-47
Msa0275730	Msa1105360	0.802384	5.755699e-49	-8.615850e-47
Msa0319680	Msa1105360	0.818076	2.367413e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1105360	MtrunA17_Chr7g0237521	86.432	199	15	1	1	199	1	187	1.88e-125	352
Msa1105360	MtrunA17_Chr4g0010271	68.844	199	50	1	1	199	1	187	4.16e-98	283
Msa1105360	MtrunA17_Chr1g0169861	62.814	199	62	1	1	199	51	237	7.12e-92	270
Msa1105360	MtrunA17_Chr7g0237561	64.824	199	58	1	1	199	1	187	3.08e-91	266
Msa1105360	MtrunA17_Chr4g0043521	60.406	197	66	1	3	199	5	189	8.62e-87	254
Msa1105360	MtrunA17_Chr2g0291651	60.406	197	66	1	3	199	7	191	7.00e-85	250
Msa1105360	MtrunA17_Chr2g0296021	59.799	199	68	1	1	199	1	187	3.20e-84	248
Msa1105360	MtrunA17_Chr1g0210521	47.248	218	84	3	1	199	1	206	5.66e-68	207
Msa1105360	MtrunA17_Chr1g0169851	54.483	145	51	1	70	199	9	153	5.42e-53	167
Msa1105360	MtrunA17_Chr4g0010211	70.093	107	32	0	76	182	3	109	2.71e-51	160

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1105360	AT2G33120.2	66.834	199	62	2	1	199	1	195	1.49e-95	278
Msa1105360	AT2G33120.1	66.332	199	55	1	1	199	1	187	7.29e-94	273
Msa1105360	AT1G04750.1	65.829	199	56	1	1	199	1	187	1.58e-93	272
Msa1105360	AT1G04760.2	63.317	199	61	1	1	199	1	187	5.31e-92	268
Msa1105360	AT1G04760.1	63.317	199	61	1	1	199	1	187	5.31e-92	268
Msa1105360	AT2G32670.1	63.819	199	60	1	1	199	66	252	3.05e-91	269
Msa1105360	AT4G15780.1	58.247	194	68	2	1	193	1	182	1.20e-78	233
Msa1105360	AT2G33110.1	54.040	198	75	2	1	198	1	182	6.73e-69	209
Msa1105360	AT3G54300.3	47.273	220	81	3	1	199	1	206	2.38e-68	209
Msa1105360	AT3G54300.2	47.273	220	81	3	1	199	1	206	2.38e-68	209

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Find 35 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTTGAACAAAGAATT+TGG	0.149954	7_3:+43784687	Msa1105360:CDS
AAAGCTTGAACAAAGAATTT+GGG	0.431429	7_3:+43784688	Msa1105360:CDS
AAATTCACTTACAACACCGA+TGG	0.653817	7_3:+43784262	Msa1105360:CDS
AACTGACAACCTTCGTGATC+AGG	0.429765	7_3:+43785332	Msa1105360:CDS
ACATGATCGTCATATTGCTA+TGG	0.577485	7_3:+43784536	Msa1105360:CDS
ACTTGCGAAAGTAAAAGGTC+AGG	0.568866	7_3:+43784869	Msa1105360:CDS
AGCAAACTTGCGAAAGTAAA+AGG	0.308160	7_3:+43784864	Msa1105360:CDS
AGCGAAGTTTCCGGTGAAGT+TGG	0.520827	7_3:-43784194	None:intergenic
AGCTTACTGCGTTGTTGCTG+TGG	0.527710	7_3:+43784566	Msa1105360:CDS
ATAAAAGGACCTGATCACGA+AGG	0.753478	7_3:-43785341	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCACTTATATACAGCTTTG+TGG	+	chr7_3:43784141-43784160	Msa1105360:CDS	30.0%
TTGATCAGGTATGTATATGT+TGG	+	chr7_3:43784925-43784944	Msa1105360:intron	30.0%
ATCATAACAGTCATAACCAT+AGG	+	chr7_3:43785133-43785152	Msa1105360:intron	30.0%
GAGTTTATTGCATATTCCTA+TGG	-	chr7_3:43785152-43785171	None:intergenic	30.0%
GACATATACTGTTGAGAATA+TGG	-	chr7_3:43785192-43785211	None:intergenic	30.0%
ATCACTTATATACAGCTTTG+TGG	+	chr7_3:43784141-43784160	Msa1105360:CDS	30.0%
TTGATCAGGTATGTATATGT+TGG	+	chr7_3:43784925-43784944	Msa1105360:intron	30.0%
ATCATAACAGTCATAACCAT+AGG	+	chr7_3:43785133-43785152	Msa1105360:intron	30.0%
GAGTTTATTGCATATTCCTA+TGG	-	chr7_3:43785152-43785171	None:intergenic	30.0%
GACATATACTGTTGAGAATA+TGG	-	chr7_3:43785192-43785211	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	43784130	43785652	43784130	ID=Msa1105360;Name=Msa1105360
chr7_3	mRNA	43784130	43785652	43784130	ID=Msa1105360-mRNA-1;Parent=Msa1105360;Name=Msa1105360-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0\|0.25\|0.2\|1\|1\|1\|5\|0\|199
chr7_3	exon	43784130	43784319	43784130	ID=Msa1105360-mRNA-1:exon:9019;Parent=Msa1105360-mRNA-1
chr7_3	exon	43784532	43784709	43784532	ID=Msa1105360-mRNA-1:exon:9020;Parent=Msa1105360-mRNA-1
chr7_3	exon	43784812	43784932	43784812	ID=Msa1105360-mRNA-1:exon:9021;Parent=Msa1105360-mRNA-1
chr7_3	exon	43785291	43785353	43785291	ID=Msa1105360-mRNA-1:exon:9022;Parent=Msa1105360-mRNA-1
chr7_3	exon	43785605	43785652	43785605	ID=Msa1105360-mRNA-1:exon:9023;Parent=Msa1105360-mRNA-1
chr7_3	CDS	43784130	43784319	43784130	ID=Msa1105360-mRNA-1:cds;Parent=Msa1105360-mRNA-1
chr7_3	CDS	43784532	43784709	43784532	ID=Msa1105360-mRNA-1:cds;Parent=Msa1105360-mRNA-1
chr7_3	CDS	43784812	43784932	43784812	ID=Msa1105360-mRNA-1:cds;Parent=Msa1105360-mRNA-1
chr7_3	CDS	43785291	43785353	43785291	ID=Msa1105360-mRNA-1:cds;Parent=Msa1105360-mRNA-1
chr7_3	CDS	43785605	43785652	43785605	ID=Msa1105360-mRNA-1:cds;Parent=Msa1105360-mRNA-1

Gene Sequence

>Msa1105360

ATGGCGCAACAATCACTTATATACAGCTTTGTGGCGCGTGGCACGGTGATTCTGGCCGAGCACACCAACTTCACCGGAAACTTCGCTGAAATAGCCTTGCAATGCCTGCAAAGACTCCCAGAAACCAACACAAAATTCACTTACAACACCGATGGTCATACCTTCAACTACCTCGCCCATGATGGATTCAACTTACATGATCGTCATATTGCTATGGAATCTTTAGCTTACTGCGTTGTTGCTGTGGAATCTTTTGATCGCAATATTGCTATGGCCTTTCTTGATCGCATCAAGGAGGATTTTACCAAAAGATATGCTGGAGGAAAAGCTGCAACAGCAACATCTAAAAGCTTGAACAAAGAATTTGGACCGAAAATGAAGGAGCATATGCAATATTGTGTGGAACATCCAGAGGAGGTTAGCAAACTTGCGAAAGTAAAAGGTCAGGTGTCTCAAGTTCTAGATGTTATGTTGGAAAATTTTGATCAGGTCAATAATCGTCAAGTGAAGATCGACGTTTTGATGGACAAAACTGACAACCTTCGTGATCAGGCACAAGTTTTCAGGGGGCAGGGAGGGCAATTAAGGAGAAAGATGTGA

Protein sequence

>Msa1105360

MAQQSLIYSFVARGTVILAEHTNFTGNFAEIALQCLQRLPETNTKFTYNTDGHTFNYLAHDGFNLHDRHIAMESLAYCVVAVESFDRNIAMAFLDRIKEDFTKRYAGGKAATATSKSLNKEFGPKMKEHMQYCVEHPEEVSKLAKVKGQVSQVLDVMLENFDQVNNRQVKIDVLMDKTDNLRDQAQVFRGQGGQLRRKM*