Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105360 | XP_003622943.1 | 86.432 | 199 | 15 | 1 | 1 | 199 | 1 | 187 | 2.05e-121 | 352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105360 | sp|P47192|VA722_ARATH | 66.332 | 199 | 55 | 1 | 1 | 199 | 1 | 187 | 7.17e-93 | 273 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105360 | G7L1A5 | 86.432 | 199 | 15 | 1 | 1 | 199 | 1 | 187 | 9.78e-122 | 352 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002300 | Msa1105360 | 0.966426 | 6.635614e-126 | -8.615850e-47 |
| Msa0034540 | Msa1105360 | 0.800027 | 1.746861e-48 | -8.615850e-47 |
| Msa0107830 | Msa1105360 | 0.801175 | 1.019136e-48 | -8.615850e-47 |
| Msa0652590 | Msa1105360 | 0.805459 | 1.321731e-49 | -8.615850e-47 |
| Msa0662010 | Msa1105360 | 0.942632 | 5.089572e-102 | -8.615850e-47 |
| Msa0662040 | Msa1105360 | 0.892595 | 1.373292e-74 | -8.615850e-47 |
| Msa0740630 | Msa1105360 | 0.809813 | 1.571374e-50 | -8.615850e-47 |
| Msa0744710 | Msa1105360 | 0.809134 | 2.198217e-50 | -8.615850e-47 |
| Msa0746340 | Msa1105360 | 0.807562 | 4.756817e-50 | -8.615850e-47 |
| Msa0795320 | Msa1105360 | 0.805914 | 1.060716e-49 | -8.615850e-47 |
| Msa0804870 | Msa1105360 | 0.805328 | 1.407562e-49 | -8.615850e-47 |
| Msa0820880 | Msa1105360 | 0.811303 | 7.489064e-51 | -8.615850e-47 |
| Msa0826240 | Msa1105360 | 0.808354 | 3.227934e-50 | -8.615850e-47 |
| Msa0832950 | Msa1105360 | 0.806986 | 6.300777e-50 | -8.615850e-47 |
| Msa0126430 | Msa1105360 | 0.808099 | 3.657243e-50 | -8.615850e-47 |
| Msa0150620 | Msa1105360 | 0.820500 | 6.639666e-53 | -8.615850e-47 |
| Msa0185100 | Msa1105360 | 0.803607 | 3.215905e-49 | -8.615850e-47 |
| Msa0204170 | Msa1105360 | 0.804200 | 2.421254e-49 | -8.615850e-47 |
| Msa0218090 | Msa1105360 | 0.800999 | 1.107489e-48 | -8.615850e-47 |
| Msa0383900 | Msa1105360 | 0.819470 | 1.141850e-52 | -8.615850e-47 |
| Msa0390200 | Msa1105360 | 0.800061 | 1.719599e-48 | -8.615850e-47 |
| Msa0434300 | Msa1105360 | 0.802695 | 4.965113e-49 | -8.615850e-47 |
| Msa0434400 | Msa1105360 | 0.812222 | 4.726410e-51 | -8.615850e-47 |
| Msa1030210 | Msa1105360 | 0.860628 | 1.809358e-63 | -8.615850e-47 |
| Msa1035050 | Msa1105360 | 0.802272 | 6.070305e-49 | -8.615850e-47 |
| Msa1069250 | Msa1105360 | 0.834611 | 2.711709e-56 | -8.615850e-47 |
| Msa1077970 | Msa1105360 | 0.805834 | 1.102263e-49 | -8.615850e-47 |
| Msa1084890 | Msa1105360 | 0.806934 | 6.464122e-50 | -8.615850e-47 |
| Msa1095590 | Msa1105360 | 0.803422 | 3.512602e-49 | -8.615850e-47 |
| Msa1102210 | Msa1105360 | 0.835953 | 1.242899e-56 | -8.615850e-47 |
| Msa1105320 | Msa1105360 | 0.827041 | 1.946863e-54 | -8.615850e-47 |
| Msa1105360 | Msa1105390 | 0.935473 | 8.026876e-97 | -8.615850e-47 |
| Msa1105360 | Msa1110900 | 0.825232 | 5.244118e-54 | -8.615850e-47 |
| Msa1105360 | Msa1120580 | 0.820045 | 8.440291e-53 | -8.615850e-47 |
| Msa1105360 | Msa1136760 | 0.804077 | 2.568727e-49 | -8.615850e-47 |
| Msa1105360 | Msa1157110 | 0.823358 | 1.445774e-53 | -8.615850e-47 |
| Msa1105360 | Msa1202110 | 0.817808 | 2.721869e-52 | -8.615850e-47 |
| Msa1105360 | Msa1211610 | 0.806486 | 8.035810e-50 | -8.615850e-47 |
| Msa1105360 | Msa1254870 | 0.817791 | 2.745587e-52 | -8.615850e-47 |
| Msa1105360 | Msa1328430 | 0.818794 | 1.627189e-52 | -8.615850e-47 |
| Msa1105360 | Msa1398140 | 0.809985 | 1.443199e-50 | -8.615850e-47 |
| Msa1105360 | Msa1404050 | 0.802553 | 5.312839e-49 | -8.615850e-47 |
| Msa1105360 | Msa1405500 | 0.803311 | 3.703780e-49 | -8.615850e-47 |
| Msa1105360 | Msa1413800 | 0.827068 | 1.918802e-54 | -8.615850e-47 |
| Msa1105360 | Msa1422230 | 0.808764 | 2.637894e-50 | -8.615850e-47 |
| Msa1105360 | Msa1436090 | 0.824631 | 7.268318e-54 | -8.615850e-47 |
| Msa1105360 | Msa1455200 | 0.802499 | 5.451149e-49 | -8.615850e-47 |
| Msa0275730 | Msa1105360 | 0.802384 | 5.755699e-49 | -8.615850e-47 |
| Msa0319680 | Msa1105360 | 0.818076 | 2.367413e-52 | -8.615850e-47 |
| Msa0320170 | Msa1105360 | 0.817642 | 2.966315e-52 | -8.615850e-47 |
| Msa0335080 | Msa1105360 | 0.811538 | 6.658134e-51 | -8.615850e-47 |
| Msa0488580 | Msa1105360 | 0.803489 | 3.402867e-49 | -8.615850e-47 |
| Msa0534610 | Msa1105360 | 0.807223 | 5.613393e-50 | -8.615850e-47 |
| Msa0590810 | Msa1105360 | 0.813855 | 2.071971e-51 | -8.615850e-47 |
| Msa0859040 | Msa1105360 | 0.812590 | 3.927969e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105360 | MtrunA17_Chr7g0237521 | 86.432 | 199 | 15 | 1 | 1 | 199 | 1 | 187 | 1.88e-125 | 352 |
| Msa1105360 | MtrunA17_Chr4g0010271 | 68.844 | 199 | 50 | 1 | 1 | 199 | 1 | 187 | 4.16e-98 | 283 |
| Msa1105360 | MtrunA17_Chr1g0169861 | 62.814 | 199 | 62 | 1 | 1 | 199 | 51 | 237 | 7.12e-92 | 270 |
| Msa1105360 | MtrunA17_Chr7g0237561 | 64.824 | 199 | 58 | 1 | 1 | 199 | 1 | 187 | 3.08e-91 | 266 |
| Msa1105360 | MtrunA17_Chr4g0043521 | 60.406 | 197 | 66 | 1 | 3 | 199 | 5 | 189 | 8.62e-87 | 254 |
| Msa1105360 | MtrunA17_Chr2g0291651 | 60.406 | 197 | 66 | 1 | 3 | 199 | 7 | 191 | 7.00e-85 | 250 |
| Msa1105360 | MtrunA17_Chr2g0296021 | 59.799 | 199 | 68 | 1 | 1 | 199 | 1 | 187 | 3.20e-84 | 248 |
| Msa1105360 | MtrunA17_Chr1g0210521 | 47.248 | 218 | 84 | 3 | 1 | 199 | 1 | 206 | 5.66e-68 | 207 |
| Msa1105360 | MtrunA17_Chr1g0169851 | 54.483 | 145 | 51 | 1 | 70 | 199 | 9 | 153 | 5.42e-53 | 167 |
| Msa1105360 | MtrunA17_Chr4g0010211 | 70.093 | 107 | 32 | 0 | 76 | 182 | 3 | 109 | 2.71e-51 | 160 |
| Msa1105360 | MtrunA17_Chr4g0026121 | 30.612 | 196 | 121 | 4 | 5 | 199 | 2 | 183 | 3.65e-29 | 107 |
| Msa1105360 | MtrunA17_Chr5g0441741 | 34.375 | 192 | 111 | 4 | 6 | 196 | 3 | 180 | 5.58e-29 | 107 |
| Msa1105360 | MtrunA17_Chr4g0064371 | 30.769 | 195 | 124 | 6 | 6 | 199 | 3 | 187 | 1.03e-21 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105360 | AT2G33120.2 | 66.834 | 199 | 62 | 2 | 1 | 199 | 1 | 195 | 1.49e-95 | 278 |
| Msa1105360 | AT2G33120.1 | 66.332 | 199 | 55 | 1 | 1 | 199 | 1 | 187 | 7.29e-94 | 273 |
| Msa1105360 | AT1G04750.1 | 65.829 | 199 | 56 | 1 | 1 | 199 | 1 | 187 | 1.58e-93 | 272 |
| Msa1105360 | AT1G04760.2 | 63.317 | 199 | 61 | 1 | 1 | 199 | 1 | 187 | 5.31e-92 | 268 |
| Msa1105360 | AT1G04760.1 | 63.317 | 199 | 61 | 1 | 1 | 199 | 1 | 187 | 5.31e-92 | 268 |
| Msa1105360 | AT2G32670.1 | 63.819 | 199 | 60 | 1 | 1 | 199 | 66 | 252 | 3.05e-91 | 269 |
| Msa1105360 | AT4G15780.1 | 58.247 | 194 | 68 | 2 | 1 | 193 | 1 | 182 | 1.20e-78 | 233 |
| Msa1105360 | AT2G33110.1 | 54.040 | 198 | 75 | 2 | 1 | 198 | 1 | 182 | 6.73e-69 | 209 |
| Msa1105360 | AT3G54300.3 | 47.273 | 220 | 81 | 3 | 1 | 199 | 1 | 206 | 2.38e-68 | 209 |
| Msa1105360 | AT3G54300.2 | 47.273 | 220 | 81 | 3 | 1 | 199 | 1 | 206 | 2.38e-68 | 209 |
| Msa1105360 | AT3G54300.1 | 47.273 | 220 | 81 | 3 | 1 | 199 | 1 | 206 | 2.38e-68 | 209 |
| Msa1105360 | AT2G33110.2 | 58.046 | 174 | 61 | 1 | 1 | 174 | 1 | 162 | 4.88e-68 | 206 |
| Msa1105360 | AT1G04750.2 | 66.972 | 109 | 36 | 0 | 91 | 199 | 1 | 109 | 4.58e-49 | 156 |
| Msa1105360 | AT1G04750.4 | 66.972 | 109 | 36 | 0 | 91 | 199 | 1 | 109 | 4.58e-49 | 156 |
| Msa1105360 | AT1G04750.3 | 66.972 | 109 | 36 | 0 | 91 | 199 | 1 | 109 | 4.58e-49 | 156 |
| Msa1105360 | AT5G11150.1 | 32.487 | 197 | 117 | 4 | 5 | 199 | 2 | 184 | 3.06e-29 | 108 |
| Msa1105360 | AT5G11150.2 | 32.487 | 197 | 117 | 4 | 5 | 199 | 2 | 184 | 5.33e-29 | 108 |
| Msa1105360 | AT5G22360.1 | 31.472 | 197 | 119 | 5 | 5 | 199 | 2 | 184 | 1.58e-28 | 106 |
| Msa1105360 | AT4G32150.1 | 31.606 | 193 | 117 | 4 | 5 | 196 | 2 | 180 | 8.68e-26 | 99.8 |
| Msa1105360 | AT2G25340.1 | 30.851 | 188 | 115 | 4 | 5 | 191 | 2 | 175 | 2.93e-24 | 95.5 |
| Msa1105360 | AT2G33120.3 | 61.111 | 54 | 21 | 0 | 146 | 199 | 52 | 105 | 8.10e-14 | 66.2 |
Find 35 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGCTTGAACAAAGAATT+TGG | 0.149954 | 7_3:+43784687 | Msa1105360:CDS |
| GGCTATTTCAGCGAAGTTTC+CGG | 0.268195 | 7_3:-43784203 | None:intergenic |
| TGGTTTCTGGGAGTCTTTGC+AGG | 0.286531 | 7_3:-43784234 | None:intergenic |
| AGCAAACTTGCGAAAGTAAA+AGG | 0.308160 | 7_3:+43784864 | Msa1105360:CDS |
| GGCGCGTGGCACGGTGATTC+TGG | 0.320729 | 7_3:+43784162 | Msa1105360:CDS |
| GCAAGTTTGCTAACCTCCTC+TGG | 0.389910 | 7_3:-43784852 | None:intergenic |
| TCCGGTGAAGTTGGTGTGCT+CGG | 0.407070 | 7_3:-43784185 | None:intergenic |
| AACTGACAACCTTCGTGATC+AGG | 0.429765 | 7_3:+43785332 | Msa1105360:CDS |
| AAAGCTTGAACAAAGAATTT+GGG | 0.431429 | 7_3:+43784688 | Msa1105360:CDS |
| ATCACTTATATACAGCTTTG+TGG | 0.443785 | 7_3:+43784141 | Msa1105360:CDS |
| CTCCTTGATGCGATCAAGAA+AGG | 0.482399 | 7_3:-43784616 | None:intergenic |
| CAGCTTTGTGGCGCGTGGCA+CGG | 0.506415 | 7_3:+43784153 | Msa1105360:CDS |
| GCCGAGCACACCAACTTCAC+CGG | 0.518367 | 7_3:+43784184 | Msa1105360:CDS |
| AGCGAAGTTTCCGGTGAAGT+TGG | 0.520827 | 7_3:-43784194 | None:intergenic |
| TCAAGTTCTAGATGTTATGT+TGG | 0.523120 | 7_3:+43784896 | Msa1105360:CDS |
| GGCCTTTCTTGATCGCATCA+AGG | 0.526618 | 7_3:+43784614 | Msa1105360:CDS |
| AGCTTACTGCGTTGTTGCTG+TGG | 0.527710 | 7_3:+43784566 | Msa1105360:CDS |
| TTCAACTACCTCGCCCATGA+TGG | 0.533919 | 7_3:+43784292 | Msa1105360:CDS |
| GTTAAGTACTGAATCCATCA+TGG | 0.534501 | 7_3:-43784306 | None:intergenic |
| ATCATGGGCGAGGTAGTTGA+AGG | 0.542753 | 7_3:-43784290 | None:intergenic |
| ACTTGCGAAAGTAAAAGGTC+AGG | 0.568866 | 7_3:+43784869 | Msa1105360:CDS |
| GAGTCTTTGCAGGCATTGCA+AGG | 0.572287 | 7_3:-43784224 | None:intergenic |
| TACTGAATCCATCATGGGCG+AGG | 0.576277 | 7_3:-43784300 | None:intergenic |
| ACATGATCGTCATATTGCTA+TGG | 0.577485 | 7_3:+43784536 | Msa1105360:CDS |
| ATATACAGCTTTGTGGCGCG+TGG | 0.589934 | 7_3:+43784148 | Msa1105360:CDS |
| ATGGTTTAGACCGAAAATGA+AGG | 0.599090 | 7_3:+43784803 | Msa1105360:intron |
| TTAAGTACTGAATCCATCAT+GGG | 0.623193 | 7_3:-43784305 | None:intergenic |
| GTAGTTGAAGGTATGACCAT+CGG | 0.631667 | 7_3:-43784278 | None:intergenic |
| CTTTCTTGATCGCATCAAGG+AGG | 0.649404 | 7_3:+43784617 | Msa1105360:CDS |
| AAATTCACTTACAACACCGA+TGG | 0.653817 | 7_3:+43784262 | Msa1105360:CDS |
| ATATTGTGTGGAACATCCAG+AGG | 0.668552 | 7_3:+43784836 | Msa1105360:CDS |
| TTTACCAAAAGATATGCTGG+AGG | 0.669628 | 7_3:+43784642 | Msa1105360:CDS |
| GGAGCATATGCAATATTGTG+TGG | 0.672159 | 7_3:+43784824 | Msa1105360:CDS |
| TTGTGTGGAACATCCAGAGG+AGG | 0.672407 | 7_3:+43784839 | Msa1105360:CDS |
| ATAAAAGGACCTGATCACGA+AGG | 0.753478 | 7_3:-43785341 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAATTATAGGAATTAT+GGG | - | chr7_3:43785115-43785134 | None:intergenic | 10.0% |
| !!! | ATTTTAATTATAGGAATTAT+GGG | - | chr7_3:43785115-43785134 | None:intergenic | 10.0% |
| !!! | TGAAGTTTTTTTATTGTATA+TGG | + | chr7_3:43784780-43784799 | Msa1105360:intron | 15.0% |
| !!! | GATTTTAATTATAGGAATTA+TGG | - | chr7_3:43785116-43785135 | None:intergenic | 15.0% |
| !!! | ACTGTTATGATTTTAATTAT+AGG | - | chr7_3:43785124-43785143 | None:intergenic | 15.0% |
| !!! | AATTTTCTCTTTTAATCTAA+CGG | - | chr7_3:43785252-43785271 | None:intergenic | 15.0% |
| !!! | ATTTTATTTGTTTTATATGC+AGG | + | chr7_3:43785269-43785288 | Msa1105360:intron | 15.0% |
| !! | TTTATGTATGAACAAATAAA+AGG | - | chr7_3:43785359-43785378 | None:intergenic | 15.0% |
| !! | TTATATTATATATGGTTACT+AGG | - | chr7_3:43785494-43785513 | None:intergenic | 15.0% |
| !!! | TGAAGTTTTTTTATTGTATA+TGG | + | chr7_3:43784780-43784799 | Msa1105360:intron | 15.0% |
| !!! | GATTTTAATTATAGGAATTA+TGG | - | chr7_3:43785116-43785135 | None:intergenic | 15.0% |
| !!! | ACTGTTATGATTTTAATTAT+AGG | - | chr7_3:43785124-43785143 | None:intergenic | 15.0% |
| !!! | AATTTTCTCTTTTAATCTAA+CGG | - | chr7_3:43785252-43785271 | None:intergenic | 15.0% |
| !!! | ATTTTATTTGTTTTATATGC+AGG | + | chr7_3:43785269-43785288 | Msa1105360:intron | 15.0% |
| !! | TTTATGTATGAACAAATAAA+AGG | - | chr7_3:43785359-43785378 | None:intergenic | 15.0% |
| !! | TTATATTATATATGGTTACT+AGG | - | chr7_3:43785494-43785513 | None:intergenic | 15.0% |
| !! | ATGTGAATATGTAATATAAG+AGG | + | chr7_3:43784384-43784403 | Msa1105360:intron | 20.0% |
| !!! | GTTTTTTTATTGTATATGGA+TGG | + | chr7_3:43784784-43784803 | Msa1105360:intron | 20.0% |
| !! | TATGAGTTTCTTGTATTTAA+AGG | - | chr7_3:43785027-43785046 | None:intergenic | 20.0% |
| !! | ATGCAATAAACTCTAATAAT+AGG | + | chr7_3:43785159-43785178 | Msa1105360:intron | 20.0% |
| !! | TTATAGTTATGTAACTGATA+TGG | + | chr7_3:43785563-43785582 | Msa1105360:intron | 20.0% |
| !! | ATGTGAATATGTAATATAAG+AGG | + | chr7_3:43784384-43784403 | Msa1105360:intron | 20.0% |
| !!! | GTTTTTTTATTGTATATGGA+TGG | + | chr7_3:43784784-43784803 | Msa1105360:intron | 20.0% |
| !! | TATGAGTTTCTTGTATTTAA+AGG | - | chr7_3:43785027-43785046 | None:intergenic | 20.0% |
| !! | ATGCAATAAACTCTAATAAT+AGG | + | chr7_3:43785159-43785178 | Msa1105360:intron | 20.0% |
| !! | TTATAGTTATGTAACTGATA+TGG | + | chr7_3:43785563-43785582 | Msa1105360:intron | 20.0% |
| ! | CAAATCATAAATTTCCTTAG+AGG | - | chr7_3:43784463-43784482 | None:intergenic | 25.0% |
| ! | AAAAGCTTGAACAAAGAATT+TGG | + | chr7_3:43784687-43784706 | Msa1105360:CDS | 25.0% |
| ! | AAAGCTTGAACAAAGAATTT+GGG | + | chr7_3:43784688-43784707 | Msa1105360:CDS | 25.0% |
| !!! | TATGTTGGAAAATTTTGATC+AGG | + | chr7_3:43784911-43784930 | Msa1105360:CDS | 25.0% |
| ! | TGTATTTAAAGGTTGTTAGA+AGG | - | chr7_3:43785016-43785035 | None:intergenic | 25.0% |
| ! | TTGGTCTGTTACAAATTTAT+AGG | - | chr7_3:43785076-43785095 | None:intergenic | 25.0% |
| ! | TTAATTATAGGAATTATGGG+AGG | - | chr7_3:43785112-43785131 | None:intergenic | 25.0% |
| ! | TCAACAGTATATGTCTAAAT+TGG | + | chr7_3:43785197-43785216 | Msa1105360:intron | 25.0% |
| ! | ACATAAACTTTGTGTTCATT+TGG | + | chr7_3:43785372-43785391 | Msa1105360:intron | 25.0% |
| ! | ATGTGAGTCATTTATTTCAA+AGG | - | chr7_3:43785444-43785463 | None:intergenic | 25.0% |
| !! | TTTGAAATAAATGACTCACA+TGG | + | chr7_3:43785443-43785462 | Msa1105360:intron | 25.0% |
| ! | ATTATATATGGTTACTAGGA+TGG | - | chr7_3:43785490-43785509 | None:intergenic | 25.0% |
| ! | TAACTGATATGGTTTGAATA+TGG | + | chr7_3:43785574-43785593 | Msa1105360:intron | 25.0% |
| ! | CAAATCATAAATTTCCTTAG+AGG | - | chr7_3:43784463-43784482 | None:intergenic | 25.0% |
| ! | AAAAGCTTGAACAAAGAATT+TGG | + | chr7_3:43784687-43784706 | Msa1105360:CDS | 25.0% |
| ! | AAAGCTTGAACAAAGAATTT+GGG | + | chr7_3:43784688-43784707 | Msa1105360:CDS | 25.0% |
| !!! | TATGTTGGAAAATTTTGATC+AGG | + | chr7_3:43784911-43784930 | Msa1105360:CDS | 25.0% |
| ! | TGTATTTAAAGGTTGTTAGA+AGG | - | chr7_3:43785016-43785035 | None:intergenic | 25.0% |
| ! | TTGGTCTGTTACAAATTTAT+AGG | - | chr7_3:43785076-43785095 | None:intergenic | 25.0% |
| ! | TTAATTATAGGAATTATGGG+AGG | - | chr7_3:43785112-43785131 | None:intergenic | 25.0% |
| ! | TCAACAGTATATGTCTAAAT+TGG | + | chr7_3:43785197-43785216 | Msa1105360:intron | 25.0% |
| ! | ACATAAACTTTGTGTTCATT+TGG | + | chr7_3:43785372-43785391 | Msa1105360:intron | 25.0% |
| ! | ATGTGAGTCATTTATTTCAA+AGG | - | chr7_3:43785444-43785463 | None:intergenic | 25.0% |
| !! | TTTGAAATAAATGACTCACA+TGG | + | chr7_3:43785443-43785462 | Msa1105360:intron | 25.0% |
| ! | ATTATATATGGTTACTAGGA+TGG | - | chr7_3:43785490-43785509 | None:intergenic | 25.0% |
| ! | TAACTGATATGGTTTGAATA+TGG | + | chr7_3:43785574-43785593 | Msa1105360:intron | 25.0% |
| ATCACTTATATACAGCTTTG+TGG | + | chr7_3:43784141-43784160 | Msa1105360:CDS | 30.0% | |
| !!! | TGAATTTTGTGTTGGTTTCT+GGG | - | chr7_3:43784249-43784268 | None:intergenic | 30.0% |
| ! | GTTGTAAGTGAATTTTGTGT+TGG | - | chr7_3:43784257-43784276 | None:intergenic | 30.0% |
| !! | TTAAGTACTGAATCCATCAT+GGG | - | chr7_3:43784308-43784327 | None:intergenic | 30.0% |
| ! | TTTTGATCGCAATATTGCTA+TGG | + | chr7_3:43784593-43784612 | Msa1105360:CDS | 30.0% |
| ! | GATTTTACCAAAAGATATGC+TGG | + | chr7_3:43784639-43784658 | Msa1105360:CDS | 30.0% |
| !! | TCAAGTTCTAGATGTTATGT+TGG | + | chr7_3:43784896-43784915 | Msa1105360:CDS | 30.0% |
| TTGATCAGGTATGTATATGT+TGG | + | chr7_3:43784925-43784944 | Msa1105360:intron | 30.0% | |
| ATCATAACAGTCATAACCAT+AGG | + | chr7_3:43785133-43785152 | Msa1105360:intron | 30.0% | |
| GAGTTTATTGCATATTCCTA+TGG | - | chr7_3:43785152-43785171 | None:intergenic | 30.0% | |
| GACATATACTGTTGAGAATA+TGG | - | chr7_3:43785192-43785211 | None:intergenic | 30.0% | |
| ATCACTTATATACAGCTTTG+TGG | + | chr7_3:43784141-43784160 | Msa1105360:CDS | 30.0% | |
| !!! | TGAATTTTGTGTTGGTTTCT+GGG | - | chr7_3:43784249-43784268 | None:intergenic | 30.0% |
| ! | GTTGTAAGTGAATTTTGTGT+TGG | - | chr7_3:43784257-43784276 | None:intergenic | 30.0% |
| !! | TTAAGTACTGAATCCATCAT+GGG | - | chr7_3:43784308-43784327 | None:intergenic | 30.0% |
| ! | TTTTGATCGCAATATTGCTA+TGG | + | chr7_3:43784593-43784612 | Msa1105360:CDS | 30.0% |
| ! | GATTTTACCAAAAGATATGC+TGG | + | chr7_3:43784639-43784658 | Msa1105360:CDS | 30.0% |
| !! | TCAAGTTCTAGATGTTATGT+TGG | + | chr7_3:43784896-43784915 | Msa1105360:CDS | 30.0% |
| TTGATCAGGTATGTATATGT+TGG | + | chr7_3:43784925-43784944 | Msa1105360:intron | 30.0% | |
| ATCATAACAGTCATAACCAT+AGG | + | chr7_3:43785133-43785152 | Msa1105360:intron | 30.0% | |
| GAGTTTATTGCATATTCCTA+TGG | - | chr7_3:43785152-43785171 | None:intergenic | 30.0% | |
| GACATATACTGTTGAGAATA+TGG | - | chr7_3:43785192-43785211 | None:intergenic | 30.0% | |
| !!! | GTGAATTTTGTGTTGGTTTC+TGG | - | chr7_3:43784250-43784269 | None:intergenic | 35.0% |
| AAATTCACTTACAACACCGA+TGG | + | chr7_3:43784262-43784281 | Msa1105360:CDS | 35.0% | |
| !! | GTTAAGTACTGAATCCATCA+TGG | - | chr7_3:43784309-43784328 | None:intergenic | 35.0% |
| CTAGAATGCATTTGCATGTA+CGG | + | chr7_3:43784415-43784434 | Msa1105360:intron | 35.0% | |
| TAGAATGCATTTGCATGTAC+GGG | + | chr7_3:43784416-43784435 | Msa1105360:intron | 35.0% | |
| ACATGATCGTCATATTGCTA+TGG | + | chr7_3:43784536-43784555 | Msa1105360:CDS | 35.0% | |
| TTTACCAAAAGATATGCTGG+AGG | + | chr7_3:43784642-43784661 | Msa1105360:CDS | 35.0% | |
| ! | TTTTCCTCCAGCATATCTTT+TGG | - | chr7_3:43784649-43784668 | None:intergenic | 35.0% |
| ATGGTTTAGACCGAAAATGA+AGG | + | chr7_3:43784803-43784822 | Msa1105360:intron | 35.0% | |
| ! | TGCATATGCTCCTTCATTTT+CGG | - | chr7_3:43784816-43784835 | None:intergenic | 35.0% |
| AGCAAACTTGCGAAAGTAAA+AGG | + | chr7_3:43784864-43784883 | Msa1105360:CDS | 35.0% | |
| GGGAGGTTACAAATTTATGT+TGG | - | chr7_3:43785095-43785114 | None:intergenic | 35.0% | |
| TATGTCTAAATTGGATCCTC+TGG | + | chr7_3:43785206-43785225 | Msa1105360:intron | 35.0% | |
| !!! | GTGAATTTTGTGTTGGTTTC+TGG | - | chr7_3:43784250-43784269 | None:intergenic | 35.0% |
| AAATTCACTTACAACACCGA+TGG | + | chr7_3:43784262-43784281 | Msa1105360:CDS | 35.0% | |
| !! | GTTAAGTACTGAATCCATCA+TGG | - | chr7_3:43784309-43784328 | None:intergenic | 35.0% |
| CTAGAATGCATTTGCATGTA+CGG | + | chr7_3:43784415-43784434 | Msa1105360:intron | 35.0% | |
| TAGAATGCATTTGCATGTAC+GGG | + | chr7_3:43784416-43784435 | Msa1105360:intron | 35.0% | |
| ACATGATCGTCATATTGCTA+TGG | + | chr7_3:43784536-43784555 | Msa1105360:CDS | 35.0% | |
| TTTACCAAAAGATATGCTGG+AGG | + | chr7_3:43784642-43784661 | Msa1105360:CDS | 35.0% | |
| ! | TTTTCCTCCAGCATATCTTT+TGG | - | chr7_3:43784649-43784668 | None:intergenic | 35.0% |
| ATGGTTTAGACCGAAAATGA+AGG | + | chr7_3:43784803-43784822 | Msa1105360:intron | 35.0% | |
| ! | TGCATATGCTCCTTCATTTT+CGG | - | chr7_3:43784816-43784835 | None:intergenic | 35.0% |
| AGCAAACTTGCGAAAGTAAA+AGG | + | chr7_3:43784864-43784883 | Msa1105360:CDS | 35.0% | |
| GGGAGGTTACAAATTTATGT+TGG | - | chr7_3:43785095-43785114 | None:intergenic | 35.0% | |
| TATGTCTAAATTGGATCCTC+TGG | + | chr7_3:43785206-43785225 | Msa1105360:intron | 35.0% | |
| ! | GTAGTTGAAGGTATGACCAT+CGG | - | chr7_3:43784281-43784300 | None:intergenic | 40.0% |
| GGAGCATATGCAATATTGTG+TGG | + | chr7_3:43784824-43784843 | Msa1105360:CDS | 40.0% | |
| ATATTGTGTGGAACATCCAG+AGG | + | chr7_3:43784836-43784855 | Msa1105360:CDS | 40.0% | |
| ACTTGCGAAAGTAAAAGGTC+AGG | + | chr7_3:43784869-43784888 | Msa1105360:CDS | 40.0% | |
| ! | AGTGAAGATCGACGTTTTGA+TGG | + | chr7_3:43785305-43785324 | Msa1105360:CDS | 40.0% |
| ATAAAAGGACCTGATCACGA+AGG | - | chr7_3:43785344-43785363 | None:intergenic | 40.0% | |
| ! | TGGTTTGAATATGGCTTTGC+AGG | + | chr7_3:43785583-43785602 | Msa1105360:intron | 40.0% |
| ! | TTTGCAGGCACAAGTTTTCA+GGG | + | chr7_3:43785598-43785617 | Msa1105360:intron | 40.0% |
| ! | GTAGTTGAAGGTATGACCAT+CGG | - | chr7_3:43784281-43784300 | None:intergenic | 40.0% |
| GGAGCATATGCAATATTGTG+TGG | + | chr7_3:43784824-43784843 | Msa1105360:CDS | 40.0% | |
| ATATTGTGTGGAACATCCAG+AGG | + | chr7_3:43784836-43784855 | Msa1105360:CDS | 40.0% | |
| ACTTGCGAAAGTAAAAGGTC+AGG | + | chr7_3:43784869-43784888 | Msa1105360:CDS | 40.0% | |
| ! | AGTGAAGATCGACGTTTTGA+TGG | + | chr7_3:43785305-43785324 | Msa1105360:CDS | 40.0% |
| ATAAAAGGACCTGATCACGA+AGG | - | chr7_3:43785344-43785363 | None:intergenic | 40.0% | |
| ! | TGGTTTGAATATGGCTTTGC+AGG | + | chr7_3:43785583-43785602 | Msa1105360:intron | 40.0% |
| ! | TTTGCAGGCACAAGTTTTCA+GGG | + | chr7_3:43785598-43785617 | Msa1105360:intron | 40.0% |
| ! | GGCTATTTCAGCGAAGTTTC+CGG | - | chr7_3:43784206-43784225 | None:intergenic | 45.0% |
| TGCATGTACGGGTTTCATGT+CGG | + | chr7_3:43784427-43784446 | Msa1105360:intron | 45.0% | |
| TCGGACATTGAACACCTCTA+AGG | + | chr7_3:43784446-43784465 | Msa1105360:intron | 45.0% | |
| CTCCTTGATGCGATCAAGAA+AGG | - | chr7_3:43784619-43784638 | None:intergenic | 45.0% | |
| CTTTCTTGATCGCATCAAGG+AGG | + | chr7_3:43784617-43784636 | Msa1105360:CDS | 45.0% | |
| AACGGTCTGCACTTCAAACT+TGG | - | chr7_3:43785234-43785253 | None:intergenic | 45.0% | |
| AACTGACAACCTTCGTGATC+AGG | + | chr7_3:43785332-43785351 | Msa1105360:CDS | 45.0% | |
| ! | CTTTGCAGGCACAAGTTTTC+AGG | + | chr7_3:43785597-43785616 | Msa1105360:intron | 45.0% |
| ! | TTGCAGGCACAAGTTTTCAG+GGG | + | chr7_3:43785599-43785618 | Msa1105360:intron | 45.0% |
| ! | GGCTATTTCAGCGAAGTTTC+CGG | - | chr7_3:43784206-43784225 | None:intergenic | 45.0% |
| TGCATGTACGGGTTTCATGT+CGG | + | chr7_3:43784427-43784446 | Msa1105360:intron | 45.0% | |
| TCGGACATTGAACACCTCTA+AGG | + | chr7_3:43784446-43784465 | Msa1105360:intron | 45.0% | |
| CTCCTTGATGCGATCAAGAA+AGG | - | chr7_3:43784619-43784638 | None:intergenic | 45.0% | |
| CTTTCTTGATCGCATCAAGG+AGG | + | chr7_3:43784617-43784636 | Msa1105360:CDS | 45.0% | |
| AACGGTCTGCACTTCAAACT+TGG | - | chr7_3:43785234-43785253 | None:intergenic | 45.0% | |
| AACTGACAACCTTCGTGATC+AGG | + | chr7_3:43785332-43785351 | Msa1105360:CDS | 45.0% | |
| ! | CTTTGCAGGCACAAGTTTTC+AGG | + | chr7_3:43785597-43785616 | Msa1105360:intron | 45.0% |
| ! | TTGCAGGCACAAGTTTTCAG+GGG | + | chr7_3:43785599-43785618 | Msa1105360:intron | 45.0% |
| !! | TAATTTAGTTATATTATATA+TGG | - | chr7_3:43785502-43785521 | None:intergenic | 5.0% |
| !! | TAATTTAGTTATATTATATA+TGG | - | chr7_3:43785502-43785521 | None:intergenic | 5.0% |
| ! | ATATACAGCTTTGTGGCGCG+TGG | + | chr7_3:43784148-43784167 | Msa1105360:CDS | 50.0% |
| AGCGAAGTTTCCGGTGAAGT+TGG | - | chr7_3:43784197-43784216 | None:intergenic | 50.0% | |
| ! | GAGTCTTTGCAGGCATTGCA+AGG | - | chr7_3:43784227-43784246 | None:intergenic | 50.0% |
| ! | TGGTTTCTGGGAGTCTTTGC+AGG | - | chr7_3:43784237-43784256 | None:intergenic | 50.0% |
| ATCATGGGCGAGGTAGTTGA+AGG | - | chr7_3:43784293-43784312 | None:intergenic | 50.0% | |
| TTCAACTACCTCGCCCATGA+TGG | + | chr7_3:43784292-43784311 | Msa1105360:CDS | 50.0% | |
| TACTGAATCCATCATGGGCG+AGG | - | chr7_3:43784303-43784322 | None:intergenic | 50.0% | |
| AGCTTACTGCGTTGTTGCTG+TGG | + | chr7_3:43784566-43784585 | Msa1105360:CDS | 50.0% | |
| GGCCTTTCTTGATCGCATCA+AGG | + | chr7_3:43784614-43784633 | Msa1105360:CDS | 50.0% | |
| TTGTGTGGAACATCCAGAGG+AGG | + | chr7_3:43784839-43784858 | Msa1105360:CDS | 50.0% | |
| !! | GCAAGTTTGCTAACCTCCTC+TGG | - | chr7_3:43784855-43784874 | None:intergenic | 50.0% |
| CACTTCAAACTTGGCTCCAG+AGG | - | chr7_3:43785225-43785244 | None:intergenic | 50.0% | |
| !! | TGCAGGCACAAGTTTTCAGG+GGG | + | chr7_3:43785600-43785619 | Msa1105360:intron | 50.0% |
| ! | ATATACAGCTTTGTGGCGCG+TGG | + | chr7_3:43784148-43784167 | Msa1105360:CDS | 50.0% |
| AGCGAAGTTTCCGGTGAAGT+TGG | - | chr7_3:43784197-43784216 | None:intergenic | 50.0% | |
| ! | GAGTCTTTGCAGGCATTGCA+AGG | - | chr7_3:43784227-43784246 | None:intergenic | 50.0% |
| ! | TGGTTTCTGGGAGTCTTTGC+AGG | - | chr7_3:43784237-43784256 | None:intergenic | 50.0% |
| ATCATGGGCGAGGTAGTTGA+AGG | - | chr7_3:43784293-43784312 | None:intergenic | 50.0% | |
| TTCAACTACCTCGCCCATGA+TGG | + | chr7_3:43784292-43784311 | Msa1105360:CDS | 50.0% | |
| TACTGAATCCATCATGGGCG+AGG | - | chr7_3:43784303-43784322 | None:intergenic | 50.0% | |
| AGCTTACTGCGTTGTTGCTG+TGG | + | chr7_3:43784566-43784585 | Msa1105360:CDS | 50.0% | |
| GGCCTTTCTTGATCGCATCA+AGG | + | chr7_3:43784614-43784633 | Msa1105360:CDS | 50.0% | |
| TTGTGTGGAACATCCAGAGG+AGG | + | chr7_3:43784839-43784858 | Msa1105360:CDS | 50.0% | |
| !! | GCAAGTTTGCTAACCTCCTC+TGG | - | chr7_3:43784855-43784874 | None:intergenic | 50.0% |
| CACTTCAAACTTGGCTCCAG+AGG | - | chr7_3:43785225-43785244 | None:intergenic | 50.0% | |
| !! | TGCAGGCACAAGTTTTCAGG+GGG | + | chr7_3:43785600-43785619 | Msa1105360:intron | 50.0% |
| !! | TCCGGTGAAGTTGGTGTGCT+CGG | - | chr7_3:43784188-43784207 | None:intergenic | 55.0% |
| !! | GCACAAGTTTTCAGGGGGCA+GGG | + | chr7_3:43785605-43785624 | Msa1105360:CDS | 55.0% |
| !! | AAGTTTTCAGGGGGCAGGGA+GGG | + | chr7_3:43785609-43785628 | Msa1105360:CDS | 55.0% |
| !! | TCCGGTGAAGTTGGTGTGCT+CGG | - | chr7_3:43784188-43784207 | None:intergenic | 55.0% |
| !! | GCACAAGTTTTCAGGGGGCA+GGG | + | chr7_3:43785605-43785624 | Msa1105360:CDS | 55.0% |
| !! | AAGTTTTCAGGGGGCAGGGA+GGG | + | chr7_3:43785609-43785628 | Msa1105360:CDS | 55.0% |
| GCCGAGCACACCAACTTCAC+CGG | + | chr7_3:43784184-43784203 | Msa1105360:CDS | 60.0% | |
| !! | GGCACAAGTTTTCAGGGGGC+AGG | + | chr7_3:43785604-43785623 | Msa1105360:intron | 60.0% |
| !! | CAAGTTTTCAGGGGGCAGGG+AGG | + | chr7_3:43785608-43785627 | Msa1105360:CDS | 60.0% |
| GCCGAGCACACCAACTTCAC+CGG | + | chr7_3:43784184-43784203 | Msa1105360:CDS | 60.0% | |
| !! | GGCACAAGTTTTCAGGGGGC+AGG | + | chr7_3:43785604-43785623 | Msa1105360:intron | 60.0% |
| !! | CAAGTTTTCAGGGGGCAGGG+AGG | + | chr7_3:43785608-43785627 | Msa1105360:CDS | 60.0% |
| ! | CAGCTTTGTGGCGCGTGGCA+CGG | + | chr7_3:43784153-43784172 | Msa1105360:CDS | 65.0% |
| GGGGGCAGGGAGGGCAATTA+AGG | + | chr7_3:43785618-43785637 | Msa1105360:CDS | 65.0% | |
| ! | CAGCTTTGTGGCGCGTGGCA+CGG | + | chr7_3:43784153-43784172 | Msa1105360:CDS | 65.0% |
| GGGGGCAGGGAGGGCAATTA+AGG | + | chr7_3:43785618-43785637 | Msa1105360:CDS | 65.0% | |
| GGCGCGTGGCACGGTGATTC+TGG | + | chr7_3:43784162-43784181 | Msa1105360:CDS | 70.0% | |
| GGCGCGTGGCACGGTGATTC+TGG | + | chr7_3:43784162-43784181 | Msa1105360:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 43784130 | 43785652 | 43784130 | ID=Msa1105360;Name=Msa1105360 |
| chr7_3 | mRNA | 43784130 | 43785652 | 43784130 | ID=Msa1105360-mRNA-1;Parent=Msa1105360;Name=Msa1105360-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0.25|0.2|1|1|1|5|0|199 |
| chr7_3 | exon | 43784130 | 43784319 | 43784130 | ID=Msa1105360-mRNA-1:exon:9019;Parent=Msa1105360-mRNA-1 |
| chr7_3 | exon | 43784532 | 43784709 | 43784532 | ID=Msa1105360-mRNA-1:exon:9020;Parent=Msa1105360-mRNA-1 |
| chr7_3 | exon | 43784812 | 43784932 | 43784812 | ID=Msa1105360-mRNA-1:exon:9021;Parent=Msa1105360-mRNA-1 |
| chr7_3 | exon | 43785291 | 43785353 | 43785291 | ID=Msa1105360-mRNA-1:exon:9022;Parent=Msa1105360-mRNA-1 |
| chr7_3 | exon | 43785605 | 43785652 | 43785605 | ID=Msa1105360-mRNA-1:exon:9023;Parent=Msa1105360-mRNA-1 |
| chr7_3 | CDS | 43784130 | 43784319 | 43784130 | ID=Msa1105360-mRNA-1:cds;Parent=Msa1105360-mRNA-1 |
| chr7_3 | CDS | 43784532 | 43784709 | 43784532 | ID=Msa1105360-mRNA-1:cds;Parent=Msa1105360-mRNA-1 |
| chr7_3 | CDS | 43784812 | 43784932 | 43784812 | ID=Msa1105360-mRNA-1:cds;Parent=Msa1105360-mRNA-1 |
| chr7_3 | CDS | 43785291 | 43785353 | 43785291 | ID=Msa1105360-mRNA-1:cds;Parent=Msa1105360-mRNA-1 |
| chr7_3 | CDS | 43785605 | 43785652 | 43785605 | ID=Msa1105360-mRNA-1:cds;Parent=Msa1105360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
