Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002300 | sp|P47192|VA722_ARATH | 66.332 | 199 | 55 | 1 | 1 | 199 | 1 | 187 | 7.17e-93 | 273 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002300 | Msa0150620 | 0.805449 | 1.327942e-49 | -8.615850e-47 |
| Msa0002300 | Msa0320170 | 0.803795 | 2.939962e-49 | -8.615850e-47 |
| Msa0002300 | Msa0383900 | 0.806134 | 9.533207e-50 | -8.615850e-47 |
| Msa0002300 | Msa0662010 | 0.965099 | 3.622913e-124 | -8.615850e-47 |
| Msa0002300 | Msa0662040 | 0.894863 | 1.652508e-75 | -8.615850e-47 |
| Msa0002300 | Msa1030210 | 0.839638 | 1.405811e-57 | -8.615850e-47 |
| Msa0002300 | Msa1069250 | 0.813523 | 2.452339e-51 | -8.615850e-47 |
| Msa0002300 | Msa1102210 | 0.824007 | 1.018959e-53 | -8.615850e-47 |
| Msa0002300 | Msa1105320 | 0.803113 | 4.070907e-49 | -8.615850e-47 |
| Msa0002300 | Msa1105360 | 0.966426 | 6.635614e-126 | -8.615850e-47 |
| Msa0002300 | Msa1105390 | 0.913452 | 6.051466e-84 | -8.615850e-47 |
| Msa0002300 | Msa1110900 | 0.808937 | 2.422722e-50 | -8.615850e-47 |
| Msa0002300 | Msa1120580 | 0.804259 | 2.354130e-49 | -8.615850e-47 |
| Msa0002300 | Msa1157110 | 0.804419 | 2.180009e-49 | -8.615850e-47 |
| Msa0002300 | Msa1254870 | 0.800249 | 1.574663e-48 | -8.615850e-47 |
| Msa0002300 | Msa1328430 | 0.800096 | 1.691793e-48 | -8.615850e-47 |
| Msa0002300 | Msa1413800 | 0.811190 | 7.925505e-51 | -8.615850e-47 |
| Msa0002300 | Msa1436090 | 0.808929 | 2.432151e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002300 | MtrunA17_Chr7g0237521 | 86.432 | 199 | 15 | 1 | 1 | 199 | 1 | 187 | 1.88e-125 | 352 |
| Msa0002300 | MtrunA17_Chr4g0010271 | 68.844 | 199 | 50 | 1 | 1 | 199 | 1 | 187 | 4.16e-98 | 283 |
| Msa0002300 | MtrunA17_Chr1g0169861 | 62.814 | 199 | 62 | 1 | 1 | 199 | 51 | 237 | 7.12e-92 | 270 |
| Msa0002300 | MtrunA17_Chr7g0237561 | 64.824 | 199 | 58 | 1 | 1 | 199 | 1 | 187 | 3.08e-91 | 266 |
| Msa0002300 | MtrunA17_Chr4g0043521 | 60.406 | 197 | 66 | 1 | 3 | 199 | 5 | 189 | 8.62e-87 | 254 |
| Msa0002300 | MtrunA17_Chr2g0291651 | 60.406 | 197 | 66 | 1 | 3 | 199 | 7 | 191 | 7.00e-85 | 250 |
| Msa0002300 | MtrunA17_Chr2g0296021 | 59.799 | 199 | 68 | 1 | 1 | 199 | 1 | 187 | 3.20e-84 | 248 |
| Msa0002300 | MtrunA17_Chr1g0210521 | 47.248 | 218 | 84 | 3 | 1 | 199 | 1 | 206 | 5.66e-68 | 207 |
| Msa0002300 | MtrunA17_Chr1g0169851 | 54.483 | 145 | 51 | 1 | 70 | 199 | 9 | 153 | 5.42e-53 | 167 |
| Msa0002300 | MtrunA17_Chr4g0010211 | 70.093 | 107 | 32 | 0 | 76 | 182 | 3 | 109 | 2.71e-51 | 160 |
| Msa0002300 | MtrunA17_Chr4g0026121 | 30.612 | 196 | 121 | 4 | 5 | 199 | 2 | 183 | 3.65e-29 | 107 |
| Msa0002300 | MtrunA17_Chr5g0441741 | 34.375 | 192 | 111 | 4 | 6 | 196 | 3 | 180 | 5.58e-29 | 107 |
| Msa0002300 | MtrunA17_Chr4g0064371 | 30.769 | 195 | 124 | 6 | 6 | 199 | 3 | 187 | 1.03e-21 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002300 | AT2G33120.2 | 66.834 | 199 | 62 | 2 | 1 | 199 | 1 | 195 | 1.49e-95 | 278 |
| Msa0002300 | AT2G33120.1 | 66.332 | 199 | 55 | 1 | 1 | 199 | 1 | 187 | 7.29e-94 | 273 |
| Msa0002300 | AT1G04750.1 | 65.829 | 199 | 56 | 1 | 1 | 199 | 1 | 187 | 1.58e-93 | 272 |
| Msa0002300 | AT1G04760.2 | 63.317 | 199 | 61 | 1 | 1 | 199 | 1 | 187 | 5.31e-92 | 268 |
| Msa0002300 | AT1G04760.1 | 63.317 | 199 | 61 | 1 | 1 | 199 | 1 | 187 | 5.31e-92 | 268 |
| Msa0002300 | AT2G32670.1 | 63.819 | 199 | 60 | 1 | 1 | 199 | 66 | 252 | 3.05e-91 | 269 |
| Msa0002300 | AT4G15780.1 | 58.247 | 194 | 68 | 2 | 1 | 193 | 1 | 182 | 1.20e-78 | 233 |
| Msa0002300 | AT2G33110.1 | 54.040 | 198 | 75 | 2 | 1 | 198 | 1 | 182 | 6.73e-69 | 209 |
| Msa0002300 | AT3G54300.3 | 47.273 | 220 | 81 | 3 | 1 | 199 | 1 | 206 | 2.38e-68 | 209 |
| Msa0002300 | AT3G54300.2 | 47.273 | 220 | 81 | 3 | 1 | 199 | 1 | 206 | 2.38e-68 | 209 |
| Msa0002300 | AT3G54300.1 | 47.273 | 220 | 81 | 3 | 1 | 199 | 1 | 206 | 2.38e-68 | 209 |
| Msa0002300 | AT2G33110.2 | 58.046 | 174 | 61 | 1 | 1 | 174 | 1 | 162 | 4.88e-68 | 206 |
| Msa0002300 | AT1G04750.2 | 66.972 | 109 | 36 | 0 | 91 | 199 | 1 | 109 | 4.58e-49 | 156 |
| Msa0002300 | AT1G04750.4 | 66.972 | 109 | 36 | 0 | 91 | 199 | 1 | 109 | 4.58e-49 | 156 |
| Msa0002300 | AT1G04750.3 | 66.972 | 109 | 36 | 0 | 91 | 199 | 1 | 109 | 4.58e-49 | 156 |
| Msa0002300 | AT5G11150.1 | 32.487 | 197 | 117 | 4 | 5 | 199 | 2 | 184 | 3.06e-29 | 108 |
| Msa0002300 | AT5G11150.2 | 32.487 | 197 | 117 | 4 | 5 | 199 | 2 | 184 | 5.33e-29 | 108 |
| Msa0002300 | AT5G22360.1 | 31.472 | 197 | 119 | 5 | 5 | 199 | 2 | 184 | 1.58e-28 | 106 |
| Msa0002300 | AT4G32150.1 | 31.606 | 193 | 117 | 4 | 5 | 196 | 2 | 180 | 8.68e-26 | 99.8 |
| Msa0002300 | AT2G25340.1 | 30.851 | 188 | 115 | 4 | 5 | 191 | 2 | 175 | 2.93e-24 | 95.5 |
| Msa0002300 | AT2G33120.3 | 61.111 | 54 | 21 | 0 | 146 | 199 | 52 | 105 | 8.10e-14 | 66.2 |
Find 35 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGCTTGAACAAAGAATT+TGG | 0.149954 | 1_1:-4132273 | Msa0002300:CDS |
| GGCTATTTCAGCGAAGTTTC+CGG | 0.268195 | 1_1:+4132757 | None:intergenic |
| TGGTTTCTGGGAGTCTTTGC+AGG | 0.286531 | 1_1:+4132726 | None:intergenic |
| AGCAAACTTGCGAAAGTAAA+AGG | 0.308160 | 1_1:-4132096 | Msa0002300:CDS |
| GGCGCGTGGCACGGTGATTC+TGG | 0.320729 | 1_1:-4132798 | Msa0002300:CDS |
| GCAAGTTTGCTAACCTCCTC+TGG | 0.389910 | 1_1:+4132108 | None:intergenic |
| TCCGGTGAAGTTGGTGTGCT+CGG | 0.407070 | 1_1:+4132775 | None:intergenic |
| AACTGACAACCTTCGTGATC+AGG | 0.429765 | 1_1:-4131628 | Msa0002300:intron |
| AAAGCTTGAACAAAGAATTT+GGG | 0.431429 | 1_1:-4132272 | Msa0002300:intron |
| ATCACTTATATACAGCTTTG+TGG | 0.443785 | 1_1:-4132819 | Msa0002300:CDS |
| CTCCTTGATGCGATCAAGAA+AGG | 0.482399 | 1_1:+4132344 | None:intergenic |
| CAGCTTTGTGGCGCGTGGCA+CGG | 0.506415 | 1_1:-4132807 | Msa0002300:CDS |
| GCCGAGCACACCAACTTCAC+CGG | 0.518367 | 1_1:-4132776 | Msa0002300:CDS |
| AGCGAAGTTTCCGGTGAAGT+TGG | 0.520827 | 1_1:+4132766 | None:intergenic |
| TCAAGTTCTAGATGTTATGT+TGG | 0.523120 | 1_1:-4132064 | Msa0002300:CDS |
| GGCCTTTCTTGATCGCATCA+AGG | 0.526618 | 1_1:-4132346 | Msa0002300:CDS |
| AGCTTACTGCGTTGTTGCTG+TGG | 0.527710 | 1_1:-4132394 | Msa0002300:CDS |
| TTCAACTACCTCGCCCATGA+TGG | 0.533919 | 1_1:-4132668 | Msa0002300:CDS |
| GTTAAGTACTGAATCCATCA+TGG | 0.534501 | 1_1:+4132654 | None:intergenic |
| ATCATGGGCGAGGTAGTTGA+AGG | 0.542753 | 1_1:+4132670 | None:intergenic |
| ACTTGCGAAAGTAAAAGGTC+AGG | 0.568866 | 1_1:-4132091 | Msa0002300:CDS |
| GAGTCTTTGCAGGCATTGCA+AGG | 0.572287 | 1_1:+4132736 | None:intergenic |
| TACTGAATCCATCATGGGCG+AGG | 0.576277 | 1_1:+4132660 | None:intergenic |
| ACATGATCGTCATATTGCTA+TGG | 0.577485 | 1_1:-4132424 | Msa0002300:CDS |
| ATATACAGCTTTGTGGCGCG+TGG | 0.589934 | 1_1:-4132812 | Msa0002300:CDS |
| ATGGTTTAGACCGAAAATGA+AGG | 0.599090 | 1_1:-4132157 | Msa0002300:intron |
| TTAAGTACTGAATCCATCAT+GGG | 0.623193 | 1_1:+4132655 | None:intergenic |
| GTAGTTGAAGGTATGACCAT+CGG | 0.631667 | 1_1:+4132682 | None:intergenic |
| CTTTCTTGATCGCATCAAGG+AGG | 0.649404 | 1_1:-4132343 | Msa0002300:CDS |
| AAATTCACTTACAACACCGA+TGG | 0.653817 | 1_1:-4132698 | Msa0002300:CDS |
| ATATTGTGTGGAACATCCAG+AGG | 0.668552 | 1_1:-4132124 | Msa0002300:CDS |
| TTTACCAAAAGATATGCTGG+AGG | 0.669628 | 1_1:-4132318 | Msa0002300:CDS |
| GGAGCATATGCAATATTGTG+TGG | 0.672159 | 1_1:-4132136 | Msa0002300:CDS |
| TTGTGTGGAACATCCAGAGG+AGG | 0.672407 | 1_1:-4132121 | Msa0002300:CDS |
| ATAAAAGGACCTGATCACGA+AGG | 0.753478 | 1_1:+4131619 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAATTATAGGAATTAT+GGG | + | chr1_1:4132315-4132334 | None:intergenic | 10.0% |
| !!! | ATTTTAATTATAGGAATTAT+GGG | + | chr1_1:4132315-4132334 | None:intergenic | 10.0% |
| !!! | TGAAGTTTTTTTATTGTATA+TGG | - | chr1_1:4131980-4131999 | Msa0002300:intron | 15.0% |
| !!! | GATTTTAATTATAGGAATTA+TGG | + | chr1_1:4132316-4132335 | None:intergenic | 15.0% |
| !!! | ACTGTTATGATTTTAATTAT+AGG | + | chr1_1:4132324-4132343 | None:intergenic | 15.0% |
| !!! | AATTTTCTCTTTTAATCTAA+CGG | + | chr1_1:4132452-4132471 | None:intergenic | 15.0% |
| !!! | ATTTTATTTGTTTTATATGC+AGG | - | chr1_1:4132469-4132488 | Msa0002300:intron | 15.0% |
| !! | TTTATGTATGAACAAATAAA+AGG | + | chr1_1:4132559-4132578 | None:intergenic | 15.0% |
| !! | TTATATTATATATGGTTACT+AGG | + | chr1_1:4132694-4132713 | None:intergenic | 15.0% |
| !!! | TGAAGTTTTTTTATTGTATA+TGG | - | chr1_1:4131980-4131999 | Msa0002300:intron | 15.0% |
| !!! | GATTTTAATTATAGGAATTA+TGG | + | chr1_1:4132316-4132335 | None:intergenic | 15.0% |
| !!! | ACTGTTATGATTTTAATTAT+AGG | + | chr1_1:4132324-4132343 | None:intergenic | 15.0% |
| !!! | AATTTTCTCTTTTAATCTAA+CGG | + | chr1_1:4132452-4132471 | None:intergenic | 15.0% |
| !!! | ATTTTATTTGTTTTATATGC+AGG | - | chr1_1:4132469-4132488 | Msa0002300:intron | 15.0% |
| !! | TTTATGTATGAACAAATAAA+AGG | + | chr1_1:4132559-4132578 | None:intergenic | 15.0% |
| !! | TTATATTATATATGGTTACT+AGG | + | chr1_1:4132694-4132713 | None:intergenic | 15.0% |
| !! | ATGTGAATATGTAATATAAG+AGG | - | chr1_1:4131584-4131603 | Msa0002300:intron | 20.0% |
| !!! | GTTTTTTTATTGTATATGGA+TGG | - | chr1_1:4131984-4132003 | Msa0002300:intron | 20.0% |
| !! | TATGAGTTTCTTGTATTTAA+AGG | + | chr1_1:4132227-4132246 | None:intergenic | 20.0% |
| !! | ATGCAATAAACTCTAATAAT+AGG | - | chr1_1:4132359-4132378 | Msa0002300:CDS | 20.0% |
| !! | TTATAGTTATGTAACTGATA+TGG | - | chr1_1:4132763-4132782 | Msa0002300:CDS | 20.0% |
| !! | ATGTGAATATGTAATATAAG+AGG | - | chr1_1:4131584-4131603 | Msa0002300:intron | 20.0% |
| !!! | GTTTTTTTATTGTATATGGA+TGG | - | chr1_1:4131984-4132003 | Msa0002300:intron | 20.0% |
| !! | TATGAGTTTCTTGTATTTAA+AGG | + | chr1_1:4132227-4132246 | None:intergenic | 20.0% |
| !! | ATGCAATAAACTCTAATAAT+AGG | - | chr1_1:4132359-4132378 | Msa0002300:CDS | 20.0% |
| !! | TTATAGTTATGTAACTGATA+TGG | - | chr1_1:4132763-4132782 | Msa0002300:CDS | 20.0% |
| ! | CAAATCATAAATTTCCTTAG+AGG | + | chr1_1:4131663-4131682 | None:intergenic | 25.0% |
| ! | AAAAGCTTGAACAAAGAATT+TGG | - | chr1_1:4131887-4131906 | Msa0002300:intron | 25.0% |
| ! | AAAGCTTGAACAAAGAATTT+GGG | - | chr1_1:4131888-4131907 | Msa0002300:intron | 25.0% |
| !!! | TATGTTGGAAAATTTTGATC+AGG | - | chr1_1:4132111-4132130 | Msa0002300:CDS | 25.0% |
| ! | TGTATTTAAAGGTTGTTAGA+AGG | + | chr1_1:4132216-4132235 | None:intergenic | 25.0% |
| ! | TTGGTCTGTTACAAATTTAT+AGG | + | chr1_1:4132276-4132295 | None:intergenic | 25.0% |
| ! | TTAATTATAGGAATTATGGG+AGG | + | chr1_1:4132312-4132331 | None:intergenic | 25.0% |
| ! | TCAACAGTATATGTCTAAAT+TGG | - | chr1_1:4132397-4132416 | Msa0002300:CDS | 25.0% |
| ! | ACATAAACTTTGTGTTCATT+TGG | - | chr1_1:4132572-4132591 | Msa0002300:intron | 25.0% |
| ! | ATGTGAGTCATTTATTTCAA+AGG | + | chr1_1:4132644-4132663 | None:intergenic | 25.0% |
| !! | TTTGAAATAAATGACTCACA+TGG | - | chr1_1:4132643-4132662 | Msa0002300:intron | 25.0% |
| ! | ATTATATATGGTTACTAGGA+TGG | + | chr1_1:4132690-4132709 | None:intergenic | 25.0% |
| ! | TAACTGATATGGTTTGAATA+TGG | - | chr1_1:4132774-4132793 | Msa0002300:CDS | 25.0% |
| ! | CAAATCATAAATTTCCTTAG+AGG | + | chr1_1:4131663-4131682 | None:intergenic | 25.0% |
| ! | AAAAGCTTGAACAAAGAATT+TGG | - | chr1_1:4131887-4131906 | Msa0002300:intron | 25.0% |
| ! | AAAGCTTGAACAAAGAATTT+GGG | - | chr1_1:4131888-4131907 | Msa0002300:intron | 25.0% |
| !!! | TATGTTGGAAAATTTTGATC+AGG | - | chr1_1:4132111-4132130 | Msa0002300:CDS | 25.0% |
| ! | TGTATTTAAAGGTTGTTAGA+AGG | + | chr1_1:4132216-4132235 | None:intergenic | 25.0% |
| ! | TTGGTCTGTTACAAATTTAT+AGG | + | chr1_1:4132276-4132295 | None:intergenic | 25.0% |
| ! | TTAATTATAGGAATTATGGG+AGG | + | chr1_1:4132312-4132331 | None:intergenic | 25.0% |
| ! | TCAACAGTATATGTCTAAAT+TGG | - | chr1_1:4132397-4132416 | Msa0002300:CDS | 25.0% |
| ! | ACATAAACTTTGTGTTCATT+TGG | - | chr1_1:4132572-4132591 | Msa0002300:intron | 25.0% |
| ! | ATGTGAGTCATTTATTTCAA+AGG | + | chr1_1:4132644-4132663 | None:intergenic | 25.0% |
| !! | TTTGAAATAAATGACTCACA+TGG | - | chr1_1:4132643-4132662 | Msa0002300:intron | 25.0% |
| ! | ATTATATATGGTTACTAGGA+TGG | + | chr1_1:4132690-4132709 | None:intergenic | 25.0% |
| ! | TAACTGATATGGTTTGAATA+TGG | - | chr1_1:4132774-4132793 | Msa0002300:CDS | 25.0% |
| ATCACTTATATACAGCTTTG+TGG | - | chr1_1:4131341-4131360 | Msa0002300:CDS | 30.0% | |
| !!! | TGAATTTTGTGTTGGTTTCT+GGG | + | chr1_1:4131449-4131468 | None:intergenic | 30.0% |
| ! | GTTGTAAGTGAATTTTGTGT+TGG | + | chr1_1:4131457-4131476 | None:intergenic | 30.0% |
| !! | TTAAGTACTGAATCCATCAT+GGG | + | chr1_1:4131508-4131527 | None:intergenic | 30.0% |
| ! | TTTTGATCGCAATATTGCTA+TGG | - | chr1_1:4131793-4131812 | Msa0002300:intron | 30.0% |
| ! | GATTTTACCAAAAGATATGC+TGG | - | chr1_1:4131839-4131858 | Msa0002300:intron | 30.0% |
| !! | TCAAGTTCTAGATGTTATGT+TGG | - | chr1_1:4132096-4132115 | Msa0002300:CDS | 30.0% |
| TTGATCAGGTATGTATATGT+TGG | - | chr1_1:4132125-4132144 | Msa0002300:CDS | 30.0% | |
| ATCATAACAGTCATAACCAT+AGG | - | chr1_1:4132333-4132352 | Msa0002300:CDS | 30.0% | |
| GAGTTTATTGCATATTCCTA+TGG | + | chr1_1:4132352-4132371 | None:intergenic | 30.0% | |
| GACATATACTGTTGAGAATA+TGG | + | chr1_1:4132392-4132411 | None:intergenic | 30.0% | |
| ATCACTTATATACAGCTTTG+TGG | - | chr1_1:4131341-4131360 | Msa0002300:CDS | 30.0% | |
| !!! | TGAATTTTGTGTTGGTTTCT+GGG | + | chr1_1:4131449-4131468 | None:intergenic | 30.0% |
| ! | GTTGTAAGTGAATTTTGTGT+TGG | + | chr1_1:4131457-4131476 | None:intergenic | 30.0% |
| !! | TTAAGTACTGAATCCATCAT+GGG | + | chr1_1:4131508-4131527 | None:intergenic | 30.0% |
| ! | TTTTGATCGCAATATTGCTA+TGG | - | chr1_1:4131793-4131812 | Msa0002300:intron | 30.0% |
| ! | GATTTTACCAAAAGATATGC+TGG | - | chr1_1:4131839-4131858 | Msa0002300:intron | 30.0% |
| !! | TCAAGTTCTAGATGTTATGT+TGG | - | chr1_1:4132096-4132115 | Msa0002300:CDS | 30.0% |
| TTGATCAGGTATGTATATGT+TGG | - | chr1_1:4132125-4132144 | Msa0002300:CDS | 30.0% | |
| ATCATAACAGTCATAACCAT+AGG | - | chr1_1:4132333-4132352 | Msa0002300:CDS | 30.0% | |
| GAGTTTATTGCATATTCCTA+TGG | + | chr1_1:4132352-4132371 | None:intergenic | 30.0% | |
| GACATATACTGTTGAGAATA+TGG | + | chr1_1:4132392-4132411 | None:intergenic | 30.0% | |
| !!! | GTGAATTTTGTGTTGGTTTC+TGG | + | chr1_1:4131450-4131469 | None:intergenic | 35.0% |
| AAATTCACTTACAACACCGA+TGG | - | chr1_1:4131462-4131481 | Msa0002300:intron | 35.0% | |
| !! | GTTAAGTACTGAATCCATCA+TGG | + | chr1_1:4131509-4131528 | None:intergenic | 35.0% |
| CTAGAATGCATTTGCATGTA+CGG | - | chr1_1:4131615-4131634 | Msa0002300:intron | 35.0% | |
| TAGAATGCATTTGCATGTAC+GGG | - | chr1_1:4131616-4131635 | Msa0002300:intron | 35.0% | |
| ACATGATCGTCATATTGCTA+TGG | - | chr1_1:4131736-4131755 | Msa0002300:intron | 35.0% | |
| TTTACCAAAAGATATGCTGG+AGG | - | chr1_1:4131842-4131861 | Msa0002300:intron | 35.0% | |
| ! | TTTTCCTCCAGCATATCTTT+TGG | + | chr1_1:4131849-4131868 | None:intergenic | 35.0% |
| ATGGTTTAGACCGAAAATGA+AGG | - | chr1_1:4132003-4132022 | Msa0002300:intron | 35.0% | |
| ! | TGCATATGCTCCTTCATTTT+CGG | + | chr1_1:4132016-4132035 | None:intergenic | 35.0% |
| AGCAAACTTGCGAAAGTAAA+AGG | - | chr1_1:4132064-4132083 | Msa0002300:CDS | 35.0% | |
| GGGAGGTTACAAATTTATGT+TGG | + | chr1_1:4132295-4132314 | None:intergenic | 35.0% | |
| TATGTCTAAATTGGATCCTC+TGG | - | chr1_1:4132406-4132425 | Msa0002300:CDS | 35.0% | |
| !!! | GTGAATTTTGTGTTGGTTTC+TGG | + | chr1_1:4131450-4131469 | None:intergenic | 35.0% |
| AAATTCACTTACAACACCGA+TGG | - | chr1_1:4131462-4131481 | Msa0002300:intron | 35.0% | |
| !! | GTTAAGTACTGAATCCATCA+TGG | + | chr1_1:4131509-4131528 | None:intergenic | 35.0% |
| CTAGAATGCATTTGCATGTA+CGG | - | chr1_1:4131615-4131634 | Msa0002300:intron | 35.0% | |
| TAGAATGCATTTGCATGTAC+GGG | - | chr1_1:4131616-4131635 | Msa0002300:intron | 35.0% | |
| ACATGATCGTCATATTGCTA+TGG | - | chr1_1:4131736-4131755 | Msa0002300:intron | 35.0% | |
| TTTACCAAAAGATATGCTGG+AGG | - | chr1_1:4131842-4131861 | Msa0002300:intron | 35.0% | |
| ! | TTTTCCTCCAGCATATCTTT+TGG | + | chr1_1:4131849-4131868 | None:intergenic | 35.0% |
| ATGGTTTAGACCGAAAATGA+AGG | - | chr1_1:4132003-4132022 | Msa0002300:intron | 35.0% | |
| ! | TGCATATGCTCCTTCATTTT+CGG | + | chr1_1:4132016-4132035 | None:intergenic | 35.0% |
| AGCAAACTTGCGAAAGTAAA+AGG | - | chr1_1:4132064-4132083 | Msa0002300:CDS | 35.0% | |
| GGGAGGTTACAAATTTATGT+TGG | + | chr1_1:4132295-4132314 | None:intergenic | 35.0% | |
| TATGTCTAAATTGGATCCTC+TGG | - | chr1_1:4132406-4132425 | Msa0002300:CDS | 35.0% | |
| ! | GTAGTTGAAGGTATGACCAT+CGG | + | chr1_1:4131481-4131500 | None:intergenic | 40.0% |
| GGAGCATATGCAATATTGTG+TGG | - | chr1_1:4132024-4132043 | Msa0002300:intron | 40.0% | |
| ATATTGTGTGGAACATCCAG+AGG | - | chr1_1:4132036-4132055 | Msa0002300:intron | 40.0% | |
| ACTTGCGAAAGTAAAAGGTC+AGG | - | chr1_1:4132069-4132088 | Msa0002300:CDS | 40.0% | |
| ! | AGTGAAGATCGACGTTTTGA+TGG | - | chr1_1:4132505-4132524 | Msa0002300:intron | 40.0% |
| ATAAAAGGACCTGATCACGA+AGG | + | chr1_1:4132544-4132563 | None:intergenic | 40.0% | |
| ! | TGGTTTGAATATGGCTTTGC+AGG | - | chr1_1:4132783-4132802 | Msa0002300:CDS | 40.0% |
| ! | TTTGCAGGCACAAGTTTTCA+GGG | - | chr1_1:4132798-4132817 | Msa0002300:CDS | 40.0% |
| ! | GTAGTTGAAGGTATGACCAT+CGG | + | chr1_1:4131481-4131500 | None:intergenic | 40.0% |
| GGAGCATATGCAATATTGTG+TGG | - | chr1_1:4132024-4132043 | Msa0002300:intron | 40.0% | |
| ATATTGTGTGGAACATCCAG+AGG | - | chr1_1:4132036-4132055 | Msa0002300:intron | 40.0% | |
| ACTTGCGAAAGTAAAAGGTC+AGG | - | chr1_1:4132069-4132088 | Msa0002300:CDS | 40.0% | |
| ! | AGTGAAGATCGACGTTTTGA+TGG | - | chr1_1:4132505-4132524 | Msa0002300:intron | 40.0% |
| ATAAAAGGACCTGATCACGA+AGG | + | chr1_1:4132544-4132563 | None:intergenic | 40.0% | |
| ! | TGGTTTGAATATGGCTTTGC+AGG | - | chr1_1:4132783-4132802 | Msa0002300:CDS | 40.0% |
| ! | TTTGCAGGCACAAGTTTTCA+GGG | - | chr1_1:4132798-4132817 | Msa0002300:CDS | 40.0% |
| ! | GGCTATTTCAGCGAAGTTTC+CGG | + | chr1_1:4131406-4131425 | None:intergenic | 45.0% |
| TGCATGTACGGGTTTCATGT+CGG | - | chr1_1:4131627-4131646 | Msa0002300:intron | 45.0% | |
| TCGGACATTGAACACCTCTA+AGG | - | chr1_1:4131646-4131665 | Msa0002300:CDS | 45.0% | |
| CTCCTTGATGCGATCAAGAA+AGG | + | chr1_1:4131819-4131838 | None:intergenic | 45.0% | |
| CTTTCTTGATCGCATCAAGG+AGG | - | chr1_1:4131817-4131836 | Msa0002300:intron | 45.0% | |
| AACGGTCTGCACTTCAAACT+TGG | + | chr1_1:4132434-4132453 | None:intergenic | 45.0% | |
| AACTGACAACCTTCGTGATC+AGG | - | chr1_1:4132532-4132551 | Msa0002300:intron | 45.0% | |
| ! | CTTTGCAGGCACAAGTTTTC+AGG | - | chr1_1:4132797-4132816 | Msa0002300:CDS | 45.0% |
| ! | TTGCAGGCACAAGTTTTCAG+GGG | - | chr1_1:4132799-4132818 | Msa0002300:CDS | 45.0% |
| ! | GGCTATTTCAGCGAAGTTTC+CGG | + | chr1_1:4131406-4131425 | None:intergenic | 45.0% |
| TGCATGTACGGGTTTCATGT+CGG | - | chr1_1:4131627-4131646 | Msa0002300:intron | 45.0% | |
| TCGGACATTGAACACCTCTA+AGG | - | chr1_1:4131646-4131665 | Msa0002300:CDS | 45.0% | |
| CTCCTTGATGCGATCAAGAA+AGG | + | chr1_1:4131819-4131838 | None:intergenic | 45.0% | |
| CTTTCTTGATCGCATCAAGG+AGG | - | chr1_1:4131817-4131836 | Msa0002300:intron | 45.0% | |
| AACGGTCTGCACTTCAAACT+TGG | + | chr1_1:4132434-4132453 | None:intergenic | 45.0% | |
| AACTGACAACCTTCGTGATC+AGG | - | chr1_1:4132532-4132551 | Msa0002300:intron | 45.0% | |
| ! | CTTTGCAGGCACAAGTTTTC+AGG | - | chr1_1:4132797-4132816 | Msa0002300:CDS | 45.0% |
| ! | TTGCAGGCACAAGTTTTCAG+GGG | - | chr1_1:4132799-4132818 | Msa0002300:CDS | 45.0% |
| !! | TAATTTAGTTATATTATATA+TGG | + | chr1_1:4132702-4132721 | None:intergenic | 5.0% |
| !! | TAATTTAGTTATATTATATA+TGG | + | chr1_1:4132702-4132721 | None:intergenic | 5.0% |
| ! | ATATACAGCTTTGTGGCGCG+TGG | - | chr1_1:4131348-4131367 | Msa0002300:CDS | 50.0% |
| AGCGAAGTTTCCGGTGAAGT+TGG | + | chr1_1:4131397-4131416 | None:intergenic | 50.0% | |
| ! | GAGTCTTTGCAGGCATTGCA+AGG | + | chr1_1:4131427-4131446 | None:intergenic | 50.0% |
| ! | TGGTTTCTGGGAGTCTTTGC+AGG | + | chr1_1:4131437-4131456 | None:intergenic | 50.0% |
| ATCATGGGCGAGGTAGTTGA+AGG | + | chr1_1:4131493-4131512 | None:intergenic | 50.0% | |
| TTCAACTACCTCGCCCATGA+TGG | - | chr1_1:4131492-4131511 | Msa0002300:intron | 50.0% | |
| TACTGAATCCATCATGGGCG+AGG | + | chr1_1:4131503-4131522 | None:intergenic | 50.0% | |
| AGCTTACTGCGTTGTTGCTG+TGG | - | chr1_1:4131766-4131785 | Msa0002300:intron | 50.0% | |
| GGCCTTTCTTGATCGCATCA+AGG | - | chr1_1:4131814-4131833 | Msa0002300:intron | 50.0% | |
| TTGTGTGGAACATCCAGAGG+AGG | - | chr1_1:4132039-4132058 | Msa0002300:intron | 50.0% | |
| !! | GCAAGTTTGCTAACCTCCTC+TGG | + | chr1_1:4132055-4132074 | None:intergenic | 50.0% |
| CACTTCAAACTTGGCTCCAG+AGG | + | chr1_1:4132425-4132444 | None:intergenic | 50.0% | |
| !! | TGCAGGCACAAGTTTTCAGG+GGG | - | chr1_1:4132800-4132819 | Msa0002300:CDS | 50.0% |
| ! | ATATACAGCTTTGTGGCGCG+TGG | - | chr1_1:4131348-4131367 | Msa0002300:CDS | 50.0% |
| AGCGAAGTTTCCGGTGAAGT+TGG | + | chr1_1:4131397-4131416 | None:intergenic | 50.0% | |
| ! | GAGTCTTTGCAGGCATTGCA+AGG | + | chr1_1:4131427-4131446 | None:intergenic | 50.0% |
| ! | TGGTTTCTGGGAGTCTTTGC+AGG | + | chr1_1:4131437-4131456 | None:intergenic | 50.0% |
| ATCATGGGCGAGGTAGTTGA+AGG | + | chr1_1:4131493-4131512 | None:intergenic | 50.0% | |
| TTCAACTACCTCGCCCATGA+TGG | - | chr1_1:4131492-4131511 | Msa0002300:intron | 50.0% | |
| TACTGAATCCATCATGGGCG+AGG | + | chr1_1:4131503-4131522 | None:intergenic | 50.0% | |
| AGCTTACTGCGTTGTTGCTG+TGG | - | chr1_1:4131766-4131785 | Msa0002300:intron | 50.0% | |
| GGCCTTTCTTGATCGCATCA+AGG | - | chr1_1:4131814-4131833 | Msa0002300:intron | 50.0% | |
| TTGTGTGGAACATCCAGAGG+AGG | - | chr1_1:4132039-4132058 | Msa0002300:intron | 50.0% | |
| !! | GCAAGTTTGCTAACCTCCTC+TGG | + | chr1_1:4132055-4132074 | None:intergenic | 50.0% |
| CACTTCAAACTTGGCTCCAG+AGG | + | chr1_1:4132425-4132444 | None:intergenic | 50.0% | |
| !! | TGCAGGCACAAGTTTTCAGG+GGG | - | chr1_1:4132800-4132819 | Msa0002300:CDS | 50.0% |
| !! | TCCGGTGAAGTTGGTGTGCT+CGG | + | chr1_1:4131388-4131407 | None:intergenic | 55.0% |
| !! | GCACAAGTTTTCAGGGGGCA+GGG | - | chr1_1:4132805-4132824 | Msa0002300:CDS | 55.0% |
| !! | AAGTTTTCAGGGGGCAGGGA+GGG | - | chr1_1:4132809-4132828 | Msa0002300:CDS | 55.0% |
| !! | TCCGGTGAAGTTGGTGTGCT+CGG | + | chr1_1:4131388-4131407 | None:intergenic | 55.0% |
| !! | GCACAAGTTTTCAGGGGGCA+GGG | - | chr1_1:4132805-4132824 | Msa0002300:CDS | 55.0% |
| !! | AAGTTTTCAGGGGGCAGGGA+GGG | - | chr1_1:4132809-4132828 | Msa0002300:CDS | 55.0% |
| GCCGAGCACACCAACTTCAC+CGG | - | chr1_1:4131384-4131403 | Msa0002300:intron | 60.0% | |
| !! | GGCACAAGTTTTCAGGGGGC+AGG | - | chr1_1:4132804-4132823 | Msa0002300:CDS | 60.0% |
| !! | CAAGTTTTCAGGGGGCAGGG+AGG | - | chr1_1:4132808-4132827 | Msa0002300:CDS | 60.0% |
| GCCGAGCACACCAACTTCAC+CGG | - | chr1_1:4131384-4131403 | Msa0002300:intron | 60.0% | |
| !! | GGCACAAGTTTTCAGGGGGC+AGG | - | chr1_1:4132804-4132823 | Msa0002300:CDS | 60.0% |
| !! | CAAGTTTTCAGGGGGCAGGG+AGG | - | chr1_1:4132808-4132827 | Msa0002300:CDS | 60.0% |
| ! | CAGCTTTGTGGCGCGTGGCA+CGG | - | chr1_1:4131353-4131372 | Msa0002300:CDS | 65.0% |
| GGGGGCAGGGAGGGCAATTA+AGG | - | chr1_1:4132818-4132837 | Msa0002300:CDS | 65.0% | |
| ! | CAGCTTTGTGGCGCGTGGCA+CGG | - | chr1_1:4131353-4131372 | Msa0002300:CDS | 65.0% |
| GGGGGCAGGGAGGGCAATTA+AGG | - | chr1_1:4132818-4132837 | Msa0002300:CDS | 65.0% | |
| GGCGCGTGGCACGGTGATTC+TGG | - | chr1_1:4131362-4131381 | Msa0002300:intron | 70.0% | |
| GGCGCGTGGCACGGTGATTC+TGG | - | chr1_1:4131362-4131381 | Msa0002300:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 4131330 | 4132852 | 4131330 | ID=Msa0002300;Name=Msa0002300 |
| chr1_1 | mRNA | 4131330 | 4132852 | 4131330 | ID=Msa0002300-mRNA-1;Parent=Msa0002300;Name=Msa0002300-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0.25|0.2|1|1|1|5|0|199 |
| chr1_1 | exon | 4132663 | 4132852 | 4132663 | ID=Msa0002300-mRNA-1:exon:1267;Parent=Msa0002300-mRNA-1 |
| chr1_1 | exon | 4132273 | 4132450 | 4132273 | ID=Msa0002300-mRNA-1:exon:1266;Parent=Msa0002300-mRNA-1 |
| chr1_1 | exon | 4132050 | 4132170 | 4132050 | ID=Msa0002300-mRNA-1:exon:1265;Parent=Msa0002300-mRNA-1 |
| chr1_1 | exon | 4131629 | 4131691 | 4131629 | ID=Msa0002300-mRNA-1:exon:1264;Parent=Msa0002300-mRNA-1 |
| chr1_1 | exon | 4131330 | 4131377 | 4131330 | ID=Msa0002300-mRNA-1:exon:1263;Parent=Msa0002300-mRNA-1 |
| chr1_1 | CDS | 4132663 | 4132852 | 4132663 | ID=Msa0002300-mRNA-1:cds;Parent=Msa0002300-mRNA-1 |
| chr1_1 | CDS | 4132273 | 4132450 | 4132273 | ID=Msa0002300-mRNA-1:cds;Parent=Msa0002300-mRNA-1 |
| chr1_1 | CDS | 4132050 | 4132170 | 4132050 | ID=Msa0002300-mRNA-1:cds;Parent=Msa0002300-mRNA-1 |
| chr1_1 | CDS | 4131629 | 4131691 | 4131629 | ID=Msa0002300-mRNA-1:cds;Parent=Msa0002300-mRNA-1 |
| chr1_1 | CDS | 4131330 | 4131377 | 4131330 | ID=Msa0002300-mRNA-1:cds;Parent=Msa0002300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
