Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1413800 | A0A072V2E5 | 87.448 | 239 | 23 | 2 | 1 | 239 | 1 | 232 | 1.35e-133 | 385 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000820 | Msa1413800 | 0.845456 | 4.016205e-59 | -8.615850e-47 |
| Msa0002300 | Msa1413800 | 0.811190 | 7.925505e-51 | -8.615850e-47 |
| Msa0005260 | Msa1413800 | 0.808414 | 3.134465e-50 | -8.615850e-47 |
| Msa0022470 | Msa1413800 | 0.801422 | 9.070741e-49 | -8.615850e-47 |
| Msa0030800 | Msa1413800 | 0.800589 | 1.342799e-48 | -8.615850e-47 |
| Msa0037760 | Msa1413800 | 0.808580 | 2.887887e-50 | -8.615850e-47 |
| Msa0051480 | Msa1413800 | 0.801631 | 8.221670e-49 | -8.615850e-47 |
| Msa0052580 | Msa1413800 | 0.820524 | 6.554885e-53 | -8.615850e-47 |
| Msa0052780 | Msa1413800 | 0.815630 | 8.379669e-52 | -8.615850e-47 |
| Msa0059440 | Msa1413800 | 0.828900 | 6.952344e-55 | -8.615850e-47 |
| Msa0071470 | Msa1413800 | 0.831469 | 1.639945e-55 | -8.615850e-47 |
| Msa0078210 | Msa1413800 | 0.806304 | 8.779856e-50 | -8.615850e-47 |
| Msa0086360 | Msa1413800 | 0.808603 | 2.855476e-50 | -8.615850e-47 |
| Msa0090380 | Msa1413800 | 0.866689 | 2.373421e-65 | -8.615850e-47 |
| Msa0095940 | Msa1413800 | 0.819483 | 1.134398e-52 | -8.615850e-47 |
| Msa0097570 | Msa1413800 | 0.820520 | 6.567535e-53 | -8.615850e-47 |
| Msa0104070 | Msa1413800 | 0.807636 | 4.588617e-50 | -8.615850e-47 |
| Msa0104810 | Msa1413800 | 0.818621 | 1.781162e-52 | -8.615850e-47 |
| Msa0118010 | Msa1413800 | 0.810614 | 1.056215e-50 | -8.615850e-47 |
| Msa0119430 | Msa1413800 | 0.823312 | 1.482069e-53 | -8.615850e-47 |
| Msa1355510 | Msa1413800 | 0.837505 | 4.995957e-57 | -8.615850e-47 |
| Msa1356130 | Msa1413800 | 0.834851 | 2.359983e-56 | -8.615850e-47 |
| Msa1362850 | Msa1413800 | 0.821068 | 4.914140e-53 | -8.615850e-47 |
| Msa1369320 | Msa1413800 | 0.830024 | 3.706285e-55 | -8.615850e-47 |
| Msa1370420 | Msa1413800 | 0.801088 | 1.061870e-48 | -8.615850e-47 |
| Msa1386000 | Msa1413800 | 0.808013 | 3.814379e-50 | -8.615850e-47 |
| Msa1395110 | Msa1413800 | 0.818305 | 2.100890e-52 | -8.615850e-47 |
| Msa1398140 | Msa1413800 | 0.846148 | 2.604870e-59 | -8.615850e-47 |
| Msa1401110 | Msa1413800 | 0.817409 | 3.348187e-52 | -8.615850e-47 |
| Msa1402350 | Msa1413800 | 0.801779 | 7.663048e-49 | -8.615850e-47 |
| Msa1404050 | Msa1413800 | 0.839069 | 1.975176e-57 | -8.615850e-47 |
| Msa1405530 | Msa1413800 | 0.804463 | 2.133998e-49 | -8.615850e-47 |
| Msa1413680 | Msa1413800 | 0.811771 | 5.927023e-51 | -8.615850e-47 |
| Msa1413800 | Msa1420940 | 0.807466 | 4.985199e-50 | -8.615850e-47 |
| Msa1413800 | Msa1422230 | 0.846863 | 1.662307e-59 | -8.615850e-47 |
| Msa1413800 | Msa1427000 | 0.815910 | 7.255576e-52 | -8.615850e-47 |
| Msa1413800 | Msa1433410 | 0.859284 | 4.601179e-63 | -8.615850e-47 |
| Msa1413800 | Msa1435320 | 0.844442 | 7.539884e-59 | -8.615850e-47 |
| Msa1413800 | Msa1436090 | 0.999070 | 1.092904e-288 | -8.615850e-47 |
| Msa1413800 | Msa1438160 | 0.805344 | 1.396801e-49 | -8.615850e-47 |
| Msa1413800 | Msa1439780 | 0.812231 | 4.705598e-51 | -8.615850e-47 |
| Msa1413800 | Msa1443400 | 0.845306 | 4.410320e-59 | -8.615850e-47 |
| Msa1413800 | Msa1443620 | 0.844248 | 8.501985e-59 | -8.615850e-47 |
| Msa1413800 | Msa1443640 | 0.813601 | 2.356464e-51 | -8.615850e-47 |
| Msa1413800 | Msa1448040 | 0.845165 | 4.814294e-59 | -8.615850e-47 |
| Msa1413800 | Msa1451990 | 0.802581 | 5.242583e-49 | -8.615850e-47 |
| Msa1413800 | Msa1455200 | 0.818968 | 1.486185e-52 | -8.615850e-47 |
| Msa0603300 | Msa1413800 | 0.800293 | 1.542427e-48 | -8.615850e-47 |
| Msa0611060 | Msa1413800 | 0.839066 | 1.978270e-57 | -8.615850e-47 |
| Msa0613300 | Msa1413800 | 0.811832 | 5.746937e-51 | -8.615850e-47 |
| Msa0615200 | Msa1413800 | 0.819639 | 1.044898e-52 | -8.615850e-47 |
| Msa0615210 | Msa1413800 | 0.814161 | 1.773856e-51 | -8.615850e-47 |
| Msa0618550 | Msa1413800 | 0.811733 | 6.041249e-51 | -8.615850e-47 |
| Msa0631130 | Msa1413800 | 0.841057 | 5.985207e-58 | -8.615850e-47 |
| Msa0652590 | Msa1413800 | 0.806300 | 8.795944e-50 | -8.615850e-47 |
| Msa0657340 | Msa1413800 | 0.847531 | 1.090365e-59 | -8.615850e-47 |
| Msa0662010 | Msa1413800 | 0.800266 | 1.562576e-48 | -8.615850e-47 |
| Msa0669350 | Msa1413800 | 0.831002 | 2.136804e-55 | -8.615850e-47 |
| Msa0682160 | Msa1413800 | 0.801449 | 8.955638e-49 | -8.615850e-47 |
| Msa0693750 | Msa1413800 | 0.815917 | 7.230967e-52 | -8.615850e-47 |
| Msa0701430 | Msa1413800 | 0.820802 | 5.656462e-53 | -8.615850e-47 |
| Msa0703030 | Msa1413800 | 0.804757 | 1.853421e-49 | -8.615850e-47 |
| Msa0704560 | Msa1413800 | 0.811902 | 5.549861e-51 | -8.615850e-47 |
| Msa0723770 | Msa1413800 | 0.808078 | 3.695307e-50 | -8.615850e-47 |
| Msa0725580 | Msa1413800 | 0.808092 | 3.669703e-50 | -8.615850e-47 |
| Msa0740630 | Msa1413800 | 0.829510 | 4.943724e-55 | -8.615850e-47 |
| Msa0744640 | Msa1413800 | 0.843213 | 1.609268e-58 | -8.615850e-47 |
| Msa0744710 | Msa1413800 | 0.808311 | 3.295630e-50 | -8.615850e-47 |
| Msa0746340 | Msa1413800 | 0.814140 | 1.792510e-51 | -8.615850e-47 |
| Msa0758520 | Msa1413800 | 0.804113 | 2.524541e-49 | -8.615850e-47 |
| Msa0758570 | Msa1413800 | 0.808890 | 2.479945e-50 | -8.615850e-47 |
| Msa0765140 | Msa1413800 | 0.818303 | 2.103606e-52 | -8.615850e-47 |
| Msa0781210 | Msa1413800 | 0.803208 | 3.890311e-49 | -8.615850e-47 |
| Msa0790920 | Msa1413800 | 0.805297 | 1.429118e-49 | -8.615850e-47 |
| Msa0804870 | Msa1413800 | 0.837280 | 5.703791e-57 | -8.615850e-47 |
| Msa0816630 | Msa1413800 | 0.822633 | 2.134089e-53 | -8.615850e-47 |
| Msa0820880 | Msa1413800 | 0.833813 | 4.297966e-56 | -8.615850e-47 |
| Msa0826240 | Msa1413800 | 0.809731 | 1.637179e-50 | -8.615850e-47 |
| Msa0832950 | Msa1413800 | 0.816264 | 6.049933e-52 | -8.615850e-47 |
| Msa0833270 | Msa1413800 | 0.820985 | 5.134006e-53 | -8.615850e-47 |
| Msa0838870 | Msa1413800 | 0.831998 | 1.214413e-55 | -8.615850e-47 |
| Msa0841730 | Msa1413800 | 0.842880 | 1.973724e-58 | -8.615850e-47 |
| Msa0137860 | Msa1413800 | 0.861979 | 7.009404e-64 | -8.615850e-47 |
| Msa0139680 | Msa1413800 | 0.802209 | 6.254150e-49 | -8.615850e-47 |
| Msa0143640 | Msa1413800 | 0.806535 | 7.848101e-50 | -8.615850e-47 |
| Msa0150620 | Msa1413800 | 0.857408 | 1.665478e-62 | -8.615850e-47 |
| Msa0153860 | Msa1413800 | 0.812011 | 5.253579e-51 | -8.615850e-47 |
| Msa0162680 | Msa1413800 | 0.845867 | 3.105796e-59 | -8.615850e-47 |
| Msa0170600 | Msa1413800 | 0.817286 | 3.568134e-52 | -8.615850e-47 |
| Msa0170770 | Msa1413800 | 0.810597 | 1.065182e-50 | -8.615850e-47 |
| Msa0185100 | Msa1413800 | 0.820344 | 7.208086e-53 | -8.615850e-47 |
| Msa0186240 | Msa1413800 | 0.803487 | 3.405360e-49 | -8.615850e-47 |
| Msa0193190 | Msa1413800 | 0.834195 | 3.449552e-56 | -8.615850e-47 |
| Msa0218090 | Msa1413800 | 0.829452 | 5.108193e-55 | -8.615850e-47 |
| Msa0223140 | Msa1413800 | 0.812477 | 4.157043e-51 | -8.615850e-47 |
| Msa0234740 | Msa1413800 | 0.801386 | 9.227861e-49 | -8.615850e-47 |
| Msa1225580 | Msa1413800 | 0.846610 | 1.949697e-59 | -8.615850e-47 |
| Msa1231980 | Msa1413800 | 0.831886 | 1.294129e-55 | -8.615850e-47 |
| Msa1246780 | Msa1413800 | 0.802989 | 4.318731e-49 | -8.615850e-47 |
| Msa1246790 | Msa1413800 | 0.835248 | 1.874150e-56 | -8.615850e-47 |
| Msa1254870 | Msa1413800 | 0.843313 | 1.513519e-58 | -8.615850e-47 |
| Msa1262540 | Msa1413800 | 0.831334 | 1.770625e-55 | -8.615850e-47 |
| Msa1286220 | Msa1413800 | 0.821200 | 4.580913e-53 | -8.615850e-47 |
| Msa1296240 | Msa1413800 | 0.810780 | 9.723180e-51 | -8.615850e-47 |
| Msa1299480 | Msa1413800 | 0.808350 | 3.233232e-50 | -8.615850e-47 |
| Msa1312440 | Msa1413800 | 0.800732 | 1.255278e-48 | -8.615850e-47 |
| Msa1328430 | Msa1413800 | 0.844235 | 8.574043e-59 | -8.615850e-47 |
| Msa0383900 | Msa1413800 | 0.849943 | 2.337754e-60 | -8.615850e-47 |
| Msa0393100 | Msa1413800 | 0.876192 | 1.698152e-68 | -8.615850e-47 |
| Msa0400010 | Msa1413800 | 0.802530 | 5.371142e-49 | -8.615850e-47 |
| Msa0402800 | Msa1413800 | 0.850335 | 1.815049e-60 | -8.615850e-47 |
| Msa0415640 | Msa1413800 | 0.808223 | 3.441381e-50 | -8.615850e-47 |
| Msa0434300 | Msa1413800 | 0.820884 | 5.416724e-53 | -8.615850e-47 |
| Msa0434400 | Msa1413800 | 0.844725 | 6.327302e-59 | -8.615850e-47 |
| Msa0441260 | Msa1413800 | 0.817831 | 2.688696e-52 | -8.615850e-47 |
| Msa0443450 | Msa1413800 | 0.847136 | 1.399276e-59 | -8.615850e-47 |
| Msa0460600 | Msa1413800 | 0.831080 | 2.043706e-55 | -8.615850e-47 |
| Msa0476770 | Msa1413800 | 0.800016 | 1.756142e-48 | -8.615850e-47 |
| Msa1007900 | Msa1413800 | 0.800270 | 1.559198e-48 | -8.615850e-47 |
| Msa1025750 | Msa1413800 | 0.840088 | 1.073126e-57 | -8.615850e-47 |
| Msa1027910 | Msa1413800 | 0.801174 | 1.019821e-48 | -8.615850e-47 |
| Msa1030200 | Msa1413800 | 0.819648 | 1.040129e-52 | -8.615850e-47 |
| Msa1030210 | Msa1413800 | 0.854372 | 1.286581e-61 | -8.615850e-47 |
| Msa1030240 | Msa1413800 | 0.837710 | 4.427803e-57 | -8.615850e-47 |
| Msa1034450 | Msa1413800 | 0.811016 | 8.641540e-51 | -8.615850e-47 |
| Msa1035050 | Msa1413800 | 0.805139 | 1.541805e-49 | -8.615850e-47 |
| Msa1058200 | Msa1413800 | 0.808134 | 3.595820e-50 | -8.615850e-47 |
| Msa1061970 | Msa1413800 | 0.832892 | 7.291498e-56 | -8.615850e-47 |
| Msa1062060 | Msa1413800 | 0.801179 | 1.017401e-48 | -8.615850e-47 |
| Msa1064510 | Msa1413800 | 0.805798 | 1.121890e-49 | -8.615850e-47 |
| Msa1069250 | Msa1413800 | 0.846463 | 2.138044e-59 | -8.615850e-47 |
| Msa1071350 | Msa1413800 | 0.801534 | 8.607104e-49 | -8.615850e-47 |
| Msa1074200 | Msa1413800 | 0.812888 | 3.379726e-51 | -8.615850e-47 |
| Msa1075090 | Msa1413800 | 0.829309 | 5.533189e-55 | -8.615850e-47 |
| Msa1077970 | Msa1413800 | 0.813209 | 2.873217e-51 | -8.615850e-47 |
| Msa1084890 | Msa1413800 | 0.818319 | 2.085700e-52 | -8.615850e-47 |
| Msa1089190 | Msa1413800 | 0.800207 | 1.606124e-48 | -8.615850e-47 |
| Msa1089600 | Msa1413800 | 0.806855 | 6.716353e-50 | -8.615850e-47 |
| Msa1095590 | Msa1413800 | 0.847446 | 1.150867e-59 | -8.615850e-47 |
| Msa1102210 | Msa1413800 | 0.832401 | 9.653793e-56 | -8.615850e-47 |
| Msa1105360 | Msa1413800 | 0.827068 | 1.918802e-54 | -8.615850e-47 |
| Msa1105390 | Msa1413800 | 0.803403 | 3.544879e-49 | -8.615850e-47 |
| Msa0254470 | Msa1413800 | 0.811225 | 7.785438e-51 | -8.615850e-47 |
| Msa0264520 | Msa1413800 | 0.831490 | 1.621112e-55 | -8.615850e-47 |
| Msa0264680 | Msa1413800 | 0.837059 | 6.499646e-57 | -8.615850e-47 |
| Msa0267900 | Msa1413800 | 0.815862 | 7.435973e-52 | -8.615850e-47 |
| Msa0272400 | Msa1413800 | 0.805062 | 1.599969e-49 | -8.615850e-47 |
| Msa0273070 | Msa1413800 | 0.823047 | 1.708929e-53 | -8.615850e-47 |
| Msa0276430 | Msa1413800 | 0.802555 | 5.307502e-49 | -8.615850e-47 |
| Msa0302510 | Msa1413800 | 0.817793 | 2.742387e-52 | -8.615850e-47 |
| Msa0302730 | Msa1413800 | 0.834146 | 3.547540e-56 | -8.615850e-47 |
| Msa0306310 | Msa1413800 | 0.848504 | 5.875023e-60 | -8.615850e-47 |
| Msa0316470 | Msa1413800 | 0.825703 | 4.056232e-54 | -8.615850e-47 |
| Msa0319680 | Msa1413800 | 0.830568 | 2.729231e-55 | -8.615850e-47 |
| Msa0320170 | Msa1413800 | 0.808563 | 2.912602e-50 | -8.615850e-47 |
| Msa0332190 | Msa1413800 | 0.803720 | 3.047079e-49 | -8.615850e-47 |
| Msa0339720 | Msa1413800 | 0.815841 | 7.518514e-52 | -8.615850e-47 |
| Msa0345050 | Msa1413800 | 0.805635 | 1.213803e-49 | -8.615850e-47 |
| Msa0345890 | Msa1413800 | 0.847195 | 1.348066e-59 | -8.615850e-47 |
| Msa0345980 | Msa1413800 | 0.848386 | 6.337304e-60 | -8.615850e-47 |
| Msa1109670 | Msa1413800 | 0.820692 | 5.997654e-53 | -8.615850e-47 |
| Msa1110900 | Msa1413800 | 0.834712 | 2.557742e-56 | -8.615850e-47 |
| Msa1114670 | Msa1413800 | 0.846227 | 2.478986e-59 | -8.615850e-47 |
| Msa1115980 | Msa1413800 | 0.812318 | 4.504148e-51 | -8.615850e-47 |
| Msa1119920 | Msa1413800 | 0.815454 | 9.171112e-52 | -8.615850e-47 |
| Msa1120580 | Msa1413800 | 0.849886 | 2.424087e-60 | -8.615850e-47 |
| Msa1131120 | Msa1413800 | 0.800746 | 1.247216e-48 | -8.615850e-47 |
| Msa1131790 | Msa1413800 | 0.854791 | 9.728081e-62 | -8.615850e-47 |
| Msa1133700 | Msa1413800 | 0.814575 | 1.436643e-51 | -8.615850e-47 |
| Msa1136630 | Msa1413800 | 0.804639 | 1.961718e-49 | -8.615850e-47 |
| Msa1136760 | Msa1413800 | 0.829400 | 5.258201e-55 | -8.615850e-47 |
| Msa1142390 | Msa1413800 | 0.807696 | 4.455239e-50 | -8.615850e-47 |
| Msa1157110 | Msa1413800 | 0.870086 | 1.902695e-66 | -8.615850e-47 |
| Msa1157670 | Msa1413800 | 0.826028 | 3.395726e-54 | -8.615850e-47 |
| Msa1159170 | Msa1413800 | 0.827247 | 1.738629e-54 | -8.615850e-47 |
| Msa1173150 | Msa1413800 | 0.822579 | 2.196253e-53 | -8.615850e-47 |
| Msa1174280 | Msa1413800 | 0.821436 | 4.042669e-53 | -8.615850e-47 |
| Msa1180430 | Msa1413800 | 0.835292 | 1.827095e-56 | -8.615850e-47 |
| Msa1187490 | Msa1413800 | 0.838285 | 3.148416e-57 | -8.615850e-47 |
| Msa1202110 | Msa1413800 | 0.846769 | 1.763718e-59 | -8.615850e-47 |
| Msa1203810 | Msa1413800 | 0.826640 | 2.427660e-54 | -8.615850e-47 |
| Msa1211610 | Msa1413800 | 0.812584 | 3.939447e-51 | -8.615850e-47 |
| Msa1218160 | Msa1413800 | 0.807080 | 6.018140e-50 | -8.615850e-47 |
| Msa1221220 | Msa1413800 | 0.829361 | 5.374276e-55 | -8.615850e-47 |
| Msa1221240 | Msa1413800 | 0.816521 | 5.298680e-52 | -8.615850e-47 |
| Msa0484800 | Msa1413800 | 0.837695 | 4.466166e-57 | -8.615850e-47 |
| Msa0488580 | Msa1413800 | 0.874553 | 6.174460e-68 | -8.615850e-47 |
| Msa0490320 | Msa1413800 | 0.804166 | 2.461657e-49 | -8.615850e-47 |
| Msa0493870 | Msa1413800 | 0.801448 | 8.962124e-49 | -8.615850e-47 |
| Msa0497690 | Msa1413800 | 0.821470 | 3.969692e-53 | -8.615850e-47 |
| Msa0497860 | Msa1413800 | 0.861005 | 1.389958e-63 | -8.615850e-47 |
| Msa0522140 | Msa1413800 | 0.812776 | 3.576517e-51 | -8.615850e-47 |
| Msa0522170 | Msa1413800 | 0.811480 | 6.855738e-51 | -8.615850e-47 |
| Msa0534270 | Msa1413800 | 0.819698 | 1.013114e-52 | -8.615850e-47 |
| Msa0534610 | Msa1413800 | 0.848043 | 7.879305e-60 | -8.615850e-47 |
| Msa0556270 | Msa1413800 | 0.816759 | 4.685468e-52 | -8.615850e-47 |
| Msa0565180 | Msa1413800 | 0.829574 | 4.769719e-55 | -8.615850e-47 |
| Msa0566530 | Msa1413800 | 0.810152 | 1.328489e-50 | -8.615850e-47 |
| Msa0576560 | Msa1413800 | 0.801104 | 1.053919e-48 | -8.615850e-47 |
| Msa0580840 | Msa1413800 | 0.803590 | 3.242317e-49 | -8.615850e-47 |
| Msa0584580 | Msa1413800 | 0.801396 | 9.185473e-49 | -8.615850e-47 |
| Msa0584600 | Msa1413800 | 0.819368 | 1.204978e-52 | -8.615850e-47 |
| Msa0588710 | Msa1413800 | 0.831948 | 1.249655e-55 | -8.615850e-47 |
| Msa0590390 | Msa1413800 | 0.853184 | 2.826647e-61 | -8.615850e-47 |
| Msa0590810 | Msa1413800 | 0.842616 | 2.318687e-58 | -8.615850e-47 |
| Msa0592650 | Msa1413800 | 0.802425 | 5.643875e-49 | -8.615850e-47 |
| Msa0597180 | Msa1413800 | 0.802942 | 4.415615e-49 | -8.615850e-47 |
| Msa0845670 | Msa1413800 | 0.811267 | 7.624503e-51 | -8.615850e-47 |
| Msa0859040 | Msa1413800 | 0.822308 | 2.539520e-53 | -8.615850e-47 |
| Msa0863990 | Msa1413800 | 0.804105 | 2.533698e-49 | -8.615850e-47 |
| Msa0874640 | Msa1413800 | 0.844630 | 6.711789e-59 | -8.615850e-47 |
| Msa0945130 | Msa1413800 | 0.845735 | 3.374637e-59 | -8.615850e-47 |
| Msa0966580 | Msa1413800 | 0.806929 | 6.480139e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1413800 | MtrunA17_Chr3g0134881 | 87.448 | 239 | 23 | 2 | 1 | 239 | 1 | 232 | 2.60e-137 | 385 |
| Msa1413800 | MtrunA17_Chr1g0152461 | 40.264 | 303 | 99 | 10 | 1 | 239 | 1 | 285 | 9.50e-57 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1413800 | AT1G59590.1 | 36.098 | 205 | 95 | 8 | 19 | 211 | 8 | 188 | 3.78e-30 | 112 |
| Msa1413800 | AT1G10220.1 | 36.898 | 187 | 102 | 6 | 19 | 200 | 4 | 179 | 1.23e-24 | 97.4 |
| Msa1413800 | AT1G10220.2 | 33.862 | 189 | 116 | 4 | 19 | 200 | 4 | 190 | 1.91e-23 | 94.7 |
Find 29 sgRNAs with CRISPR-Local
Find 38 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGAACTATCTTTCAAAAT+AGG | 0.247880 | tig0024068:-25840 | None:intergenic |
| GGAAATTGCCACAAACTAAA+TGG | 0.257314 | tig0024068:-25272 | None:intergenic |
| AGAGAAATTGATGAAGAAAA+AGG | 0.259298 | tig0024068:+25866 | Msa1413800:CDS |
| TTTGATCAAGTTCAGATAGA+AGG | 0.288309 | tig0024068:-25410 | None:intergenic |
| CCAAAAGAAAAGACAACAAT+AGG | 0.309829 | tig0024068:+25343 | Msa1413800:CDS |
| TCAAACAAGATTGAAAGCTT+TGG | 0.359242 | tig0024068:+25687 | Msa1413800:CDS |
| ATGGTATATCATCTTCTAAT+TGG | 0.359629 | tig0024068:-25299 | None:intergenic |
| ATGCTTAACCATTTAGTTTG+TGG | 0.373237 | tig0024068:+25264 | Msa1413800:CDS |
| TCTAAGCCTCTTGAAGCATA+AGG | 0.392424 | tig0024068:-25375 | None:intergenic |
| TCAACATGTTTCTGATCCAT+TGG | 0.398061 | tig0024068:-25606 | None:intergenic |
| TTGTTGTTGTTGACTGTGTT+TGG | 0.422356 | tig0024068:+25771 | Msa1413800:CDS |
| GCTTCTAATGATAAGAGATC+TGG | 0.433001 | tig0024068:+25933 | Msa1413800:CDS |
| TATCATCTTCTAATTGGTGT+TGG | 0.486872 | tig0024068:-25293 | None:intergenic |
| CAAGAGTGAAGAACAAGTTA+AGG | 0.497546 | tig0024068:+25557 | Msa1413800:CDS |
| TATCTGAACTTGATCAAAGA+AGG | 0.501411 | tig0024068:+25415 | Msa1413800:CDS |
| AAAATCAATATCACAACAGC+AGG | 0.519128 | tig0024068:-25750 | None:intergenic |
| ATGATGAGATATTTCCAACT+TGG | 0.523515 | tig0024068:-25643 | None:intergenic |
| CAAAAGAAAAGACAACAATA+GGG | 0.523809 | tig0024068:+25344 | Msa1413800:CDS |
| AAAAGGATTATGTTACTGAA+GGG | 0.526034 | tig0024068:+25883 | Msa1413800:CDS |
| AGAAACAAAACAAGCCAAGT+TGG | 0.528975 | tig0024068:+25629 | Msa1413800:CDS |
| TCTCTTTGAATATGTTGAAG+AGG | 0.529203 | tig0024068:+25712 | Msa1413800:CDS |
| TTGATCAAGTTCAGATAGAA+GGG | 0.545038 | tig0024068:-25409 | None:intergenic |
| AATAATCCTTATGCTTCAAG+AGG | 0.562509 | tig0024068:+25369 | Msa1413800:CDS |
| GAAGCTTTAGAATCACCTCT+AGG | 0.571693 | tig0024068:-25915 | None:intergenic |
| CGAACAAAAGATATGTCATG+TGG | 0.588570 | tig0024068:-25462 | None:intergenic |
| ACAGCAGGCACATAGAAAGA+AGG | 0.600782 | tig0024068:-25735 | None:intergenic |
| CGCTTTGTACGTGTATTGTG+TGG | 0.626912 | tig0024068:+25808 | Msa1413800:CDS |
| GAACAAAAGATATGTCATGT+GGG | 0.637973 | tig0024068:-25461 | None:intergenic |
| GAAGGGTTACTTTCTCCTAG+AGG | 0.682377 | tig0024068:+25900 | Msa1413800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATGGTATATCATCTTCTAAT+TGG | - | tig0024068:25302-25321 | None:intergenic | 25.0% |
| !! | TTCTTTTGGATTTGGATTTT+GGG | - | tig0024068:25332-25351 | None:intergenic | 25.0% |
| !! | TTTCTTTTGGATTTGGATTT+TGG | - | tig0024068:25333-25352 | None:intergenic | 25.0% |
| ! | CAAAAGAAAAGACAACAATA+GGG | + | tig0024068:25344-25363 | Msa1413800:CDS | 25.0% |
| !! | TTTTTCACTTTGACAACAAT+TGG | - | tig0024068:25516-25535 | None:intergenic | 25.0% |
| ! | TTCGAACTATCTTTCAAAAT+AGG | - | tig0024068:25843-25862 | None:intergenic | 25.0% |
| ! | AGAGAAATTGATGAAGAAAA+AGG | + | tig0024068:25866-25885 | Msa1413800:CDS | 25.0% |
| ! | AAAAAGGATTATGTTACTGA+AGG | + | tig0024068:25882-25901 | Msa1413800:CDS | 25.0% |
| ! | AAAAGGATTATGTTACTGAA+GGG | + | tig0024068:25883-25902 | Msa1413800:CDS | 25.0% |
| !! | ATGCTTAACCATTTAGTTTG+TGG | + | tig0024068:25264-25283 | Msa1413800:CDS | 30.0% |
| TATCATCTTCTAATTGGTGT+TGG | - | tig0024068:25296-25315 | None:intergenic | 30.0% | |
| ! | GTTGTCTTTTCTTTTGGATT+TGG | - | tig0024068:25340-25359 | None:intergenic | 30.0% |
| ! | CCTATTGTTGTCTTTTCTTT+TGG | - | tig0024068:25346-25365 | None:intergenic | 30.0% |
| CCAAAAGAAAAGACAACAAT+AGG | + | tig0024068:25343-25362 | Msa1413800:CDS | 30.0% | |
| AATAATCCTTATGCTTCAAG+AGG | + | tig0024068:25369-25388 | Msa1413800:CDS | 30.0% | |
| TTGATCAAGTTCAGATAGAA+GGG | - | tig0024068:25412-25431 | None:intergenic | 30.0% | |
| TTTGATCAAGTTCAGATAGA+AGG | - | tig0024068:25413-25432 | None:intergenic | 30.0% | |
| TATCTGAACTTGATCAAAGA+AGG | + | tig0024068:25415-25434 | Msa1413800:CDS | 30.0% | |
| GAACAAAAGATATGTCATGT+GGG | - | tig0024068:25464-25483 | None:intergenic | 30.0% | |
| ! | TACATCTTTTTCTGAACCAA+TGG | + | tig0024068:25590-25609 | Msa1413800:CDS | 30.0% |
| ATGATGAGATATTTCCAACT+TGG | - | tig0024068:25646-25665 | None:intergenic | 30.0% | |
| TCAAACAAGATTGAAAGCTT+TGG | + | tig0024068:25687-25706 | Msa1413800:CDS | 30.0% | |
| TCTCTTTGAATATGTTGAAG+AGG | + | tig0024068:25712-25731 | Msa1413800:CDS | 30.0% | |
| AAAATCAATATCACAACAGC+AGG | - | tig0024068:25753-25772 | None:intergenic | 30.0% | |
| GGAAATTGCCACAAACTAAA+TGG | - | tig0024068:25275-25294 | None:intergenic | 35.0% | |
| CGAACAAAAGATATGTCATG+TGG | - | tig0024068:25465-25484 | None:intergenic | 35.0% | |
| CAAGAGTGAAGAACAAGTTA+AGG | + | tig0024068:25557-25576 | Msa1413800:CDS | 35.0% | |
| ! | TCAACATGTTTCTGATCCAT+TGG | - | tig0024068:25609-25628 | None:intergenic | 35.0% |
| AGAAACAAAACAAGCCAAGT+TGG | + | tig0024068:25629-25648 | Msa1413800:CDS | 35.0% | |
| ! | TTGTTGTTGTTGACTGTGTT+TGG | + | tig0024068:25771-25790 | Msa1413800:CDS | 35.0% |
| GCTTCTAATGATAAGAGATC+TGG | + | tig0024068:25933-25952 | Msa1413800:CDS | 35.0% | |
| AACATAGCCAACAAAAAAGC+TGG | + | tig0024068:25958-25977 | Msa1413800:CDS | 35.0% | |
| ! | TTGGATTTTGGGCTTGAACA+TGG | - | tig0024068:25321-25340 | None:intergenic | 40.0% |
| TCTAAGCCTCTTGAAGCATA+AGG | - | tig0024068:25378-25397 | None:intergenic | 40.0% | |
| !! | GAAGCTTTAGAATCACCTCT+AGG | - | tig0024068:25918-25937 | None:intergenic | 40.0% |
| ACAGCAGGCACATAGAAAGA+AGG | - | tig0024068:25738-25757 | None:intergenic | 45.0% | |
| CGCTTTGTACGTGTATTGTG+TGG | + | tig0024068:25808-25827 | Msa1413800:CDS | 45.0% | |
| ! | GAAGGGTTACTTTCTCCTAG+AGG | + | tig0024068:25900-25919 | Msa1413800:CDS | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024068 | gene | 25264 | 25983 | 25264 | ID=Msa1413800;Name=Msa1413800 |
| tig0024068 | mRNA | 25264 | 25983 | 25264 | ID=Msa1413800-mRNA-1;Parent=Msa1413800;Name=Msa1413800-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|239 |
| tig0024068 | exon | 25264 | 25983 | 25264 | ID=Msa1413800-mRNA-1:exon:21410;Parent=Msa1413800-mRNA-1 |
| tig0024068 | CDS | 25264 | 25983 | 25264 | ID=Msa1413800-mRNA-1:cds;Parent=Msa1413800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
