Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662560 | XP_013450446.1 | 91.312 | 564 | 47 | 1 | 1 | 562 | 1 | 564 | 0.0 | 1066 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662560 | sp|A0A1U8IPT1|CB60B_GOSHI | 34.560 | 489 | 270 | 14 | 54 | 528 | 44 | 496 | 3.15e-69 | 236 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662560 | A0A072U410 | 91.312 | 564 | 47 | 1 | 1 | 562 | 1 | 564 | 0.0 | 1066 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0086590 | Msa0662560 | 0.803630 | 3.180792e-49 | -8.615850e-47 |
| Msa0662560 | Msa0662570 | 0.819587 | 1.074113e-52 | -8.615850e-47 |
| Msa0662560 | Msa0688070 | 0.823272 | 1.514134e-53 | -8.615850e-47 |
| Msa0662560 | Msa0903990 | 0.805694 | 1.179530e-49 | -8.615850e-47 |
| Msa0662560 | Msa1084120 | 0.949064 | 2.703814e-107 | -8.615850e-47 |
| Msa0662560 | Msa1224480 | 0.822272 | 2.588049e-53 | -8.615850e-47 |
| Msa0662560 | Msa1255060 | 0.803953 | 2.725521e-49 | -8.615850e-47 |
| Msa0662560 | Msa1298260 | 0.800404 | 1.464079e-48 | -8.615850e-47 |
| Msa0662560 | Msa1339450 | 0.820310 | 7.340372e-53 | -8.615850e-47 |
| Msa0662560 | Msa1398880 | 0.995951 | 1.057222e-221 | -8.615850e-47 |
| Msa0662560 | Msa1398890 | 0.817523 | 3.155912e-52 | -8.615850e-47 |
| Msa0336250 | Msa0662560 | 0.803520 | 3.352676e-49 | -8.615850e-47 |
| Msa0347650 | Msa0662560 | 0.811707 | 6.119619e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662560 | MtrunA17_Chr7g0271671 | 91.312 | 564 | 47 | 1 | 1 | 562 | 1 | 564 | 0.0 | 1066 |
| Msa0662560 | MtrunA17_Chr7g0271681 | 59.514 | 494 | 170 | 8 | 91 | 559 | 1 | 489 | 0.0 | 524 |
| Msa0662560 | MtrunA17_Chr7g0271691 | 37.236 | 521 | 287 | 16 | 37 | 545 | 20 | 512 | 7.56e-79 | 257 |
| Msa0662560 | MtrunA17_Chr6g0484121 | 33.753 | 397 | 228 | 15 | 1 | 383 | 1 | 376 | 3.43e-47 | 172 |
| Msa0662560 | MtrunA17_Chr6g0484111 | 31.881 | 436 | 254 | 15 | 1 | 423 | 1 | 406 | 1.22e-46 | 170 |
| Msa0662560 | MtrunA17_Chr6g0484131 | 33.753 | 397 | 228 | 15 | 1 | 383 | 1 | 376 | 3.18e-46 | 169 |
| Msa0662560 | MtrunA17_Chr8g0391211 | 37.658 | 316 | 176 | 8 | 55 | 358 | 116 | 422 | 4.38e-46 | 170 |
| Msa0662560 | MtrunA17_Chr2g0281171 | 33.430 | 344 | 206 | 8 | 56 | 387 | 52 | 384 | 5.28e-45 | 168 |
| Msa0662560 | MtrunA17_Chr8g0391221 | 36.709 | 316 | 179 | 8 | 55 | 358 | 45 | 351 | 9.62e-45 | 165 |
| Msa0662560 | MtrunA17_Chr4g0048161 | 33.721 | 344 | 205 | 8 | 56 | 387 | 51 | 383 | 1.49e-44 | 167 |
| Msa0662560 | MtrunA17_Chr2g0304831 | 33.134 | 335 | 215 | 6 | 56 | 385 | 50 | 380 | 1.64e-44 | 166 |
| Msa0662560 | MtrunA17_Chr4g0072691 | 32.836 | 335 | 216 | 6 | 56 | 385 | 19 | 349 | 2.57e-44 | 166 |
| Msa0662560 | MtrunA17_Chr4g0059411 | 39.781 | 274 | 155 | 8 | 82 | 350 | 65 | 333 | 1.63e-43 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662560 | AT5G26920.3 | 38.279 | 337 | 193 | 6 | 52 | 386 | 37 | 360 | 9.04e-65 | 218 |
| Msa0662560 | AT5G26920.1 | 38.279 | 337 | 193 | 6 | 52 | 386 | 37 | 360 | 8.36e-64 | 219 |
| Msa0662560 | AT5G26920.2 | 37.798 | 336 | 188 | 6 | 52 | 386 | 37 | 352 | 1.48e-61 | 213 |
| Msa0662560 | AT5G57580.1 | 36.283 | 339 | 201 | 8 | 56 | 385 | 47 | 379 | 1.91e-52 | 189 |
| Msa0662560 | AT4G25800.1 | 35.103 | 339 | 205 | 8 | 56 | 385 | 36 | 368 | 8.47e-49 | 179 |
| Msa0662560 | AT4G25800.2 | 35.103 | 339 | 205 | 8 | 56 | 385 | 36 | 368 | 8.47e-49 | 179 |
| Msa0662560 | AT2G24300.2 | 33.929 | 336 | 212 | 7 | 56 | 385 | 43 | 374 | 2.49e-44 | 166 |
| Msa0662560 | AT2G24300.3 | 33.929 | 336 | 212 | 7 | 56 | 385 | 47 | 378 | 2.54e-44 | 166 |
| Msa0662560 | AT2G24300.1 | 35.959 | 292 | 178 | 6 | 99 | 385 | 40 | 327 | 3.55e-43 | 162 |
| Msa0662560 | AT4G31000.1 | 33.136 | 338 | 208 | 9 | 56 | 385 | 47 | 374 | 2.37e-42 | 160 |
| Msa0662560 | AT5G62570.4 | 34.139 | 331 | 205 | 10 | 28 | 351 | 13 | 337 | 2.08e-41 | 154 |
| Msa0662560 | AT5G62570.1 | 34.139 | 331 | 205 | 10 | 28 | 351 | 13 | 337 | 4.28e-41 | 155 |
| Msa0662560 | AT5G62570.2 | 35.690 | 297 | 182 | 8 | 59 | 351 | 31 | 322 | 4.35e-41 | 155 |
| Msa0662560 | AT1G73805.1 | 33.634 | 333 | 202 | 11 | 52 | 377 | 42 | 362 | 1.30e-40 | 153 |
| Msa0662560 | AT2G18750.3 | 31.940 | 335 | 217 | 7 | 56 | 385 | 53 | 381 | 2.68e-40 | 155 |
| Msa0662560 | AT2G18750.2 | 31.940 | 335 | 217 | 7 | 56 | 385 | 53 | 381 | 2.68e-40 | 155 |
| Msa0662560 | AT2G18750.1 | 31.940 | 335 | 217 | 7 | 56 | 385 | 53 | 381 | 2.68e-40 | 155 |
| Msa0662560 | AT5G62570.3 | 35.125 | 279 | 173 | 6 | 28 | 302 | 13 | 287 | 4.97e-36 | 137 |
| Msa0662560 | AT4G31000.2 | 32.534 | 292 | 168 | 8 | 99 | 385 | 86 | 353 | 8.62e-33 | 132 |
Find 124 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATCACTGGTTGGTCTATT+TGG | 0.168608 | 4_4:-314554 | Msa0662560:CDS |
| GAGATAGACGGCCACATTTC+TGG | 0.180333 | 4_4:+314668 | None:intergenic |
| TGATGTTTGCACAACAAAAT+TGG | 0.211587 | 4_4:+314451 | None:intergenic |
| GACATTGTGAAAATTGTTTC+AGG | 0.234773 | 4_4:+316230 | None:intergenic |
| CGAACATTCAGGACCTTAAA+AGG | 0.238490 | 4_4:+315843 | None:intergenic |
| TTCTTACTTCTTAGTCTATA+AGG | 0.280469 | 4_4:+314147 | None:intergenic |
| CACCATACAGGACACATAAT+TGG | 0.280822 | 4_4:+316108 | None:intergenic |
| CCATCCAACTGCTAGCTAAC+TGG | 0.287391 | 4_4:+314091 | None:intergenic |
| GATGTTTGCACAACAAAATT+GGG | 0.319284 | 4_4:+314452 | None:intergenic |
| TTGGAAAGTCAAACTGTTGC+AGG | 0.322001 | 4_4:+314915 | None:intergenic |
| TACCCTTTCCTCGAACATTC+AGG | 0.328468 | 4_4:+315832 | None:intergenic |
| ATCTTAGTGCTTCTTGTGTT+TGG | 0.331751 | 4_4:-317227 | Msa0662560:five_prime_UTR |
| ATCTCCCTCAGCTTTGATTT+CGG | 0.333180 | 4_4:+316208 | None:intergenic |
| AAAACACGTACGGAAATAAA+AGG | 0.334232 | 4_4:+317006 | None:intergenic |
| AGAGAAGAACCGGTCAATTT+CGG | 0.341595 | 4_4:-315929 | Msa0662560:CDS |
| TGTGATCAAATGGCAGCATT+AGG | 0.348917 | 4_4:-314611 | Msa0662560:CDS |
| TTAGTTCAATCTAATTCAAT+TGG | 0.354677 | 4_4:-315894 | Msa0662560:CDS |
| CCATGTATTGTTGTATCAAT+TGG | 0.354774 | 4_4:+314995 | None:intergenic |
| ATTCTCTTAGTACTAGTAGA+AGG | 0.362152 | 4_4:+317071 | None:intergenic |
| CATTATTGAATGATAAAGTA+TGG | 0.373290 | 4_4:-315691 | Msa0662560:CDS |
| AGTTGTCCATTTCCAACTCT+TGG | 0.375977 | 4_4:+316032 | None:intergenic |
| ATGTGTTGGCCAACTCGTTA+AGG | 0.382699 | 4_4:+316297 | None:intergenic |
| TTAAAGACAAGGGAGGATAT+TGG | 0.397067 | 4_4:+315322 | None:intergenic |
| CATACTTTATCATTCAATAA+TGG | 0.400855 | 4_4:+315692 | None:intergenic |
| ACCTCTTCTCCAGAAAAGTA+TGG | 0.401455 | 4_4:+314575 | None:intergenic |
| GCAAAACGCAAGATTGTTAC+TGG | 0.404835 | 4_4:+316863 | None:intergenic |
| GTCCTGAATGTTCGAGGAAA+GGG | 0.408908 | 4_4:-315834 | Msa0662560:intron |
| ATTCAATTGGAGCAAGCATT+CGG | 0.413576 | 4_4:-315881 | Msa0662560:CDS |
| AAAATCATTACACTAAGAAA+TGG | 0.418028 | 4_4:-315996 | Msa0662560:CDS |
| AGAGTACCTTGCTGAGCAAT+TGG | 0.420158 | 4_4:+314896 | None:intergenic |
| TTCAATTGGAGCAAGCATTC+GGG | 0.420187 | 4_4:-315880 | Msa0662560:CDS |
| ATCTCACAAAGTGGACTTGT+AGG | 0.422654 | 4_4:-314644 | Msa0662560:CDS |
| ATTTCTGGTTGGCATGGAAA+TGG | 0.424406 | 4_4:+314683 | None:intergenic |
| AGATGGAATTCACACTGTTA+AGG | 0.427571 | 4_4:-315618 | Msa0662560:CDS |
| ACAAGACTGGAGGGAAGTTA+TGG | 0.438740 | 4_4:-315420 | Msa0662560:CDS |
| TTGTAGAATAAGCACTCAAC+AGG | 0.441707 | 4_4:+314717 | None:intergenic |
| CGAACGTTTACTTCGAAAAG+TGG | 0.444298 | 4_4:-316838 | Msa0662560:intron |
| AATAGAAATACCTTGAGGTT+AGG | 0.444750 | 4_4:+316660 | None:intergenic |
| ATCTCTCAATCCACATGAAA+AGG | 0.445518 | 4_4:-315239 | Msa0662560:intron |
| GATATATCAAAGAGAAGAAC+CGG | 0.455709 | 4_4:-315939 | Msa0662560:CDS |
| TTCTGGAGAAGAGGTATCAC+TGG | 0.456301 | 4_4:-314567 | Msa0662560:CDS |
| CTGTCATTGGCAGTGCTTGG+TGG | 0.456561 | 4_4:-315068 | Msa0662560:intron |
| TTTAAGGTCCTGAATGTTCG+AGG | 0.478176 | 4_4:-315840 | Msa0662560:CDS |
| TGTGTTGGCCAACTCGTTAA+GGG | 0.482570 | 4_4:+316298 | None:intergenic |
| AACCCCTAGCCGAAATTGAC+CGG | 0.487536 | 4_4:+315920 | None:intergenic |
| TTTGTTTATGATGACGGAGC+AGG | 0.488123 | 4_4:-314497 | Msa0662560:CDS |
| CATTGTGATGTAGATGATGA+TGG | 0.491743 | 4_4:-315373 | Msa0662560:CDS |
| GTACCTCCAAGAGTTGGAAA+TGG | 0.493683 | 4_4:-316038 | Msa0662560:CDS |
| GAACCGGTCAATTTCGGCTA+GGG | 0.497068 | 4_4:-315923 | Msa0662560:CDS |
| TGATACAACAATACATGGTA+TGG | 0.502118 | 4_4:-314990 | Msa0662560:CDS |
| AGTGTACAAACTGCACAATA+TGG | 0.502488 | 4_4:-314953 | Msa0662560:CDS |
| TATCTGTAAACTCAATCTCT+TGG | 0.507557 | 4_4:+315958 | None:intergenic |
| TGTCCATTTCCAACTCTTGG+AGG | 0.507896 | 4_4:+316035 | None:intergenic |
| CATCCAACTGCTAGCTAACT+GGG | 0.509982 | 4_4:+314092 | None:intergenic |
| AGGTAGTGGTGGAGCTTATG+TGG | 0.510631 | 4_4:+316680 | None:intergenic |
| AGATTCGATCTACTCTCAAA+TGG | 0.511809 | 4_4:-314397 | Msa0662560:CDS |
| TAACGAAGATTCATTAAGAA+AGG | 0.512049 | 4_4:-315573 | Msa0662560:intron |
| CCAATTGATACAACAATACA+TGG | 0.513913 | 4_4:-314995 | Msa0662560:CDS |
| AAATTGAATGGCATCGAAGA+GGG | 0.521226 | 4_4:-317141 | Msa0662560:exon |
| GGCCACATTTCTGGTTGGCA+TGG | 0.528202 | 4_4:+314677 | None:intergenic |
| AGTCTTATATTTCAATCTAG+AGG | 0.534004 | 4_4:+314182 | None:intergenic |
| CACAGGCAGTTGACATCAGA+TGG | 0.542027 | 4_4:-315635 | Msa0662560:CDS |
| TGATAAAGTATGGCGTCTGA+AGG | 0.545484 | 4_4:-315681 | Msa0662560:CDS |
| AAATAGAAAATAGACAAGAC+TGG | 0.545967 | 4_4:-315433 | Msa0662560:intron |
| TGTTGTATGTAGCTAGAAAG+AGG | 0.546402 | 4_4:-314370 | Msa0662560:CDS |
| ATGTCCTTTGTTTATGATGA+CGG | 0.547991 | 4_4:-314503 | Msa0662560:CDS |
| AAATCAGCAACGCGTAGTCA+TGG | 0.550182 | 4_4:-316153 | Msa0662560:CDS |
| GATAAAGTATGGCGTCTGAA+GGG | 0.551278 | 4_4:-315680 | Msa0662560:CDS |
| CAAATTGTACCTCCAAGAGT+TGG | 0.551489 | 4_4:-316044 | Msa0662560:CDS |
| ATCGAAGAGGGCATCTCATG+TGG | 0.556518 | 4_4:-317129 | Msa0662560:CDS |
| GTAAAGATGGTACACTTCAC+AGG | 0.556690 | 4_4:-315652 | Msa0662560:CDS |
| TCACGCAGTTCAATTTGAAG+TGG | 0.561167 | 4_4:+316182 | None:intergenic |
| ATCCAATTATGTGTCCTGTA+TGG | 0.561327 | 4_4:-316110 | Msa0662560:CDS |
| ATACCCAGTTAGCTAGCAGT+TGG | 0.564347 | 4_4:-314095 | Msa0662560:intron |
| TGGATTGACCCTTAACGAGT+TGG | 0.565769 | 4_4:-316306 | Msa0662560:CDS |
| ACCTTGAGGTTAGGTAGTGG+TGG | 0.567120 | 4_4:+316669 | None:intergenic |
| GTTCCTTAACTAGTTGCAAG+AGG | 0.567391 | 4_4:-316708 | Msa0662560:intron |
| ATGTTTGCACAACAAAATTG+GGG | 0.568691 | 4_4:+314453 | None:intergenic |
| TAAAATTGAATTAAAGACAA+GGG | 0.568925 | 4_4:+315312 | None:intergenic |
| CTGGTTGGCATGGAAATGGT+AGG | 0.572443 | 4_4:+314687 | None:intergenic |
| CGTACGGAAATAAAAGGTGT+TGG | 0.572739 | 4_4:+317012 | None:intergenic |
| GGTCCTGAATGTTCGAGGAA+AGG | 0.575080 | 4_4:-315835 | Msa0662560:CDS |
| AACCGGTCAATTTCGGCTAG+GGG | 0.578024 | 4_4:-315922 | Msa0662560:CDS |
| AGAACCGGTCAATTTCGGCT+AGG | 0.587448 | 4_4:-315924 | Msa0662560:CDS |
| AGAAAATAGACAAGACTGGA+GGG | 0.587832 | 4_4:-315429 | Msa0662560:CDS |
| GGAGAAGAGGTATCACTGGT+TGG | 0.588993 | 4_4:-314563 | Msa0662560:CDS |
| TCTCCTCCTCTCATATGTGT+TGG | 0.590047 | 4_4:+316283 | None:intergenic |
| CTGAAGGGGATACGTAAAGA+TGG | 0.592154 | 4_4:-315665 | Msa0662560:CDS |
| CAACGCGTAGTCATGGAAGA+AGG | 0.592392 | 4_4:-316146 | Msa0662560:CDS |
| TCTATCTCAATCTCACAAAG+TGG | 0.592542 | 4_4:-314653 | Msa0662560:CDS |
| GACTTTCCAATTGCTCAGCA+AGG | 0.595283 | 4_4:-314902 | Msa0662560:intron |
| TGGAAAGTCAAACTGTTGCA+GGG | 0.596726 | 4_4:+314916 | None:intergenic |
| TAGACGGCCACATTTCTGGT+TGG | 0.599588 | 4_4:+314672 | None:intergenic |
| ATAAAGTATGGCGTCTGAAG+GGG | 0.600694 | 4_4:-315679 | Msa0662560:CDS |
| TTCCATGCCAACCAGAAATG+TGG | 0.602938 | 4_4:-314679 | Msa0662560:CDS |
| CTTTATCATTCAATAATGGA+CGG | 0.610044 | 4_4:+315696 | None:intergenic |
| ATGTCCGAAATCAAAGCTGA+GGG | 0.610692 | 4_4:-316212 | Msa0662560:CDS |
| AATTGAATTAAAGACAAGGG+AGG | 0.612137 | 4_4:+315315 | None:intergenic |
| TCCACCACTACCTAACCTCA+AGG | 0.613550 | 4_4:-316670 | Msa0662560:intron |
| GTTGTATGTAGCTAGAAAGA+GGG | 0.617369 | 4_4:-314369 | Msa0662560:CDS |
| GGAAATGGACAACTACTGAA+AGG | 0.620282 | 4_4:-316023 | Msa0662560:CDS |
| AATACCTTGAGGTTAGGTAG+TGG | 0.621059 | 4_4:+316666 | None:intergenic |
| AATGTCCGAAATCAAAGCTG+AGG | 0.622266 | 4_4:-316213 | Msa0662560:CDS |
| CTTTGTGAGATTGAGATAGA+CGG | 0.623813 | 4_4:+314656 | None:intergenic |
| ATTGTTGTATCAATTGGCAA+TGG | 0.633369 | 4_4:+315001 | None:intergenic |
| TAGTTCTAGTAGTGATGACA+AGG | 0.633706 | 4_4:-317105 | Msa0662560:CDS |
| TTAAAATTGAATTAAAGACA+AGG | 0.637130 | 4_4:+315311 | None:intergenic |
| AAAATTGAATGGCATCGAAG+AGG | 0.644164 | 4_4:-317142 | Msa0662560:exon |
| TACAACAATACATGGTATGG+TGG | 0.645400 | 4_4:-314987 | Msa0662560:CDS |
| AAAAGAGGATTGGACAGCTG+AGG | 0.645437 | 4_4:-316078 | Msa0662560:CDS |
| TAGAAAATAGACAAGACTGG+AGG | 0.645484 | 4_4:-315430 | Msa0662560:CDS |
| ATTGTGATGTAGATGATGAT+GGG | 0.651673 | 4_4:-315372 | Msa0662560:CDS |
| TGGCCAACACATATGAGAGG+AGG | 0.659498 | 4_4:-316286 | Msa0662560:CDS |
| TGCTCCGTCATCATAAACAA+AGG | 0.659879 | 4_4:+314499 | None:intergenic |
| TCGAAGAGGGCATCTCATGT+GGG | 0.661983 | 4_4:-317128 | Msa0662560:CDS |
| GTACTAAGAGAATAAAACAT+GGG | 0.665045 | 4_4:-317061 | Msa0662560:CDS |
| TCTATTTGGAAGTTACACGT+TGG | 0.667355 | 4_4:-314540 | Msa0662560:CDS |
| ATTGGAGCAAGCATTCGGGA+AGG | 0.671894 | 4_4:-315876 | Msa0662560:CDS |
| AGTACTAAGAGAATAAAACA+TGG | 0.690543 | 4_4:-317062 | Msa0662560:CDS |
| AGTTGGCCAACACATATGAG+AGG | 0.691689 | 4_4:-316289 | Msa0662560:CDS |
| TGTTTGCACAACAAAATTGG+GGG | 0.694097 | 4_4:+314454 | None:intergenic |
| AAACGCAAGATTGTTACTGG+CGG | 0.706358 | 4_4:+316866 | None:intergenic |
| GTACAAACTGCACAATATGG+TGG | 0.713505 | 4_4:-314950 | Msa0662560:CDS |
| ACATAATTGGATCTTCATCG+AGG | 0.760970 | 4_4:+316121 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAAATACATTTACTTTT+TGG | - | chr4_4:314070-314089 | Msa0662560:intron | 10.0% |
| !!! | TAATACAAAATTCATTTTAA+AGG | + | chr4_4:314745-314764 | None:intergenic | 10.0% |
| !!! | TTTTACAAAATTTATTTTTG+TGG | + | chr4_4:314795-314814 | None:intergenic | 10.0% |
| !!! | ATACTATTTCATATAATTTT+TGG | - | chr4_4:315797-315816 | Msa0662560:intron | 10.0% |
| !!! | ATATATACACAATTATATTT+TGG | + | chr4_4:316133-316152 | None:intergenic | 10.0% |
| !! | AAAATAAAATAAAACACGTA+CGG | + | chr4_4:314267-314286 | None:intergenic | 15.0% |
| !!! | ATTTTTTTACATTTTGTTAG+AGG | + | chr4_4:315463-315482 | None:intergenic | 15.0% |
| !! | AAAATGTAAAAAAATGTACA+TGG | - | chr4_4:315468-315487 | Msa0662560:intron | 15.0% |
| !! | AAATGTAAAAAAATGTACAT+GGG | - | chr4_4:315469-315488 | Msa0662560:intron | 15.0% |
| !! | TAAAATTGAATTAAAGACAA+GGG | + | chr4_4:315951-315970 | None:intergenic | 15.0% |
| !! | TTAAAATTGAATTAAAGACA+AGG | + | chr4_4:315952-315971 | None:intergenic | 15.0% |
| !!! | TGTCTTTAATTCAATTTTAA+AGG | - | chr4_4:315952-315971 | Msa0662560:CDS | 15.0% |
| !! | AATTGAAACTGAAAAAATAT+TGG | - | chr4_4:316836-316855 | Msa0662560:intron | 15.0% |
| !!! | ACAATTTTCAATTTTTTACA+CGG | + | chr4_4:317250-317269 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTGGTTGTTGAAA+AGG | + | chr4_4:314096-314115 | None:intergenic | 20.0% |
| !! | AAAAAAATAGAAATACCTTG+AGG | + | chr4_4:314608-314627 | None:intergenic | 20.0% |
| !! | TTAGTTGTTAAAAATGTAGA+TGG | - | chr4_4:314644-314663 | Msa0662560:CDS | 20.0% |
| !!! | GAATTTTGTATTAATTTGAG+TGG | - | chr4_4:314752-314771 | Msa0662560:intron | 20.0% |
| !!! | TACAAAATTTATTTTTGTGG+TGG | + | chr4_4:314792-314811 | None:intergenic | 20.0% |
| !! | AAAATCATTACACTAAGAAA+TGG | - | chr4_4:315264-315283 | Msa0662560:CDS | 20.0% |
| !! | TTAGTTCAATCTAATTCAAT+TGG | - | chr4_4:315366-315385 | Msa0662560:CDS | 20.0% |
| !! | CATACTTTATCATTCAATAA+TGG | + | chr4_4:315571-315590 | None:intergenic | 20.0% |
| !! | CATTATTGAATGATAAAGTA+TGG | - | chr4_4:315569-315588 | Msa0662560:intron | 20.0% |
| !!! | TTTCATATAATTTTTGGCTT+TGG | - | chr4_4:315803-315822 | Msa0662560:intron | 20.0% |
| !!! | TAATTCAATTTTAAAGGTTG+TGG | - | chr4_4:315958-315977 | Msa0662560:CDS | 20.0% |
| ! | AGTACTAAGAGAATAAAACA+TGG | - | chr4_4:314198-314217 | Msa0662560:three_prime_UTR | 25.0% |
| ! | GTACTAAGAGAATAAAACAT+GGG | - | chr4_4:314199-314218 | Msa0662560:three_prime_UTR | 25.0% |
| !! | AAAGTAAGAGTATGAATGAT+TGG | + | chr4_4:314456-314475 | None:intergenic | 25.0% |
| !! | TTACATTTTGTTAGAGGTTT+AGG | + | chr4_4:315457-315476 | None:intergenic | 25.0% |
| !! | CTTTATCATTCAATAATGGA+CGG | + | chr4_4:315567-315586 | None:intergenic | 25.0% |
| ! | TAACGAAGATTCATTAAGAA+AGG | - | chr4_4:315687-315706 | Msa0662560:CDS | 25.0% |
| ! | AAATAGAAAATAGACAAGAC+TGG | - | chr4_4:315827-315846 | Msa0662560:intron | 25.0% |
| !! | TATTTGGAGTGAACTTTATA+TGG | - | chr4_4:316078-316097 | Msa0662560:CDS | 25.0% |
| !! | ATATTCTGCATAAACACTTT+TGG | - | chr4_4:316395-316414 | Msa0662560:intron | 25.0% |
| ! | ATATCCTAATTCTATCATTC+AGG | - | chr4_4:316520-316539 | Msa0662560:intron | 25.0% |
| !! | TTCTGAATTTTGTGATCAAA+TGG | - | chr4_4:316639-316658 | Msa0662560:intron | 25.0% |
| ! | TTTGCTTACTCAAAAAATAC+TGG | - | chr4_4:316965-316984 | Msa0662560:intron | 25.0% |
| !! | AGTCTTATATTTCAATCTAG+AGG | + | chr4_4:317081-317100 | None:intergenic | 25.0% |
| ! | TTCTTACTTCTTAGTCTATA+AGG | + | chr4_4:317116-317135 | None:intergenic | 25.0% |
| ATTCTCTTAGTACTAGTAGA+AGG | + | chr4_4:314192-314211 | None:intergenic | 30.0% | |
| !!! | ATCTCTTTTTGTTGTTCTTC+TGG | + | chr4_4:314228-314247 | None:intergenic | 30.0% |
| AAAACACGTACGGAAATAAA+AGG | + | chr4_4:314257-314276 | None:intergenic | 30.0% | |
| GAAGTCAAGTCAAATAAGAA+AGG | + | chr4_4:314349-314368 | None:intergenic | 30.0% | |
| TGCTTCATGGATTCTAATAA+TGG | - | chr4_4:314491-314510 | Msa0662560:CDS | 30.0% | |
| CAGTTAATAGCATCAAAGAT+TGG | + | chr4_4:314520-314539 | None:intergenic | 30.0% | |
| CAATCTTTGATGCTATTAAC+TGG | - | chr4_4:314518-314537 | Msa0662560:CDS | 30.0% | |
| AATAGAAATACCTTGAGGTT+AGG | + | chr4_4:314603-314622 | None:intergenic | 30.0% | |
| ! | ATTAATTTGAGTGGTGAAAG+TGG | - | chr4_4:314761-314780 | Msa0662560:intron | 30.0% |
| ! | TAGCCAAATTTAAGACCTAA+AGG | - | chr4_4:314841-314860 | Msa0662560:intron | 30.0% |
| TTGCCTTTAGGTCTTAAATT+TGG | + | chr4_4:314847-314866 | None:intergenic | 30.0% | |
| ! | AAGTCTTGATTTTTGCCTTT+AGG | + | chr4_4:314859-314878 | None:intergenic | 30.0% |
| ! | TTGTGTTTCTAATTTAGCTG+TGG | - | chr4_4:314934-314953 | Msa0662560:CDS | 30.0% |
| GACATTGTGAAAATTGTTTC+AGG | + | chr4_4:315033-315052 | None:intergenic | 30.0% | |
| TATCTGTAAACTCAATCTCT+TGG | + | chr4_4:315305-315324 | None:intergenic | 30.0% | |
| GATATATCAAAGAGAAGAAC+CGG | - | chr4_4:315321-315340 | Msa0662560:CDS | 30.0% | |
| AGCTCTTGAAGTTATTAGTT+TGG | - | chr4_4:315767-315786 | Msa0662560:intron | 30.0% | |
| ATTGTGATGTAGATGATGAT+GGG | - | chr4_4:315888-315907 | Msa0662560:CDS | 30.0% | |
| AATTGAATTAAAGACAAGGG+AGG | + | chr4_4:315948-315967 | None:intergenic | 30.0% | |
| !! | TTCAATTTTAAAGGTTGTGG+AGG | - | chr4_4:315961-315980 | Msa0662560:CDS | 30.0% |
| TACTTGTATCCTACTTTCTT+TGG | - | chr4_4:316048-316067 | Msa0662560:CDS | 30.0% | |
| TTTCTTTGGCTGTGAATATT+TGG | - | chr4_4:316062-316081 | Msa0662560:CDS | 30.0% | |
| TTTGATCATATCAGGTTAAG+AGG | + | chr4_4:316166-316185 | None:intergenic | 30.0% | |
| !!! | AGAAGTGTTTTGATCATATC+AGG | + | chr4_4:316174-316193 | None:intergenic | 30.0% |
| ATTGTTGTATCAATTGGCAA+TGG | + | chr4_4:316262-316281 | None:intergenic | 30.0% | |
| CCATGTATTGTTGTATCAAT+TGG | + | chr4_4:316268-316287 | None:intergenic | 30.0% | |
| CCAATTGATACAACAATACA+TGG | - | chr4_4:316265-316284 | Msa0662560:CDS | 30.0% | |
| TGATACAACAATACATGGTA+TGG | - | chr4_4:316270-316289 | Msa0662560:CDS | 30.0% | |
| ! | ATGTCCTTTGTTTATGATGA+CGG | - | chr4_4:316757-316776 | Msa0662560:intron | 30.0% |
| ATGTTTGCACAACAAAATTG+GGG | + | chr4_4:316810-316829 | None:intergenic | 30.0% | |
| GATGTTTGCACAACAAAATT+GGG | + | chr4_4:316811-316830 | None:intergenic | 30.0% | |
| TGATGTTTGCACAACAAAAT+TGG | + | chr4_4:316812-316831 | None:intergenic | 30.0% | |
| ! | AAGCAAAAAGCATGAACTAA+GGG | + | chr4_4:316952-316971 | None:intergenic | 30.0% |
| ! | TAAGCAAAAAGCATGAACTA+AGG | + | chr4_4:316953-316972 | None:intergenic | 30.0% |
| ATCTTAGTGCTTCTTGTGTT+TGG | - | chr4_4:314033-314052 | Msa0662560:three_prime_UTR | 35.0% | |
| ! | AAAATTGAATGGCATCGAAG+AGG | - | chr4_4:314118-314137 | Msa0662560:three_prime_UTR | 35.0% |
| ! | AAATTGAATGGCATCGAAGA+GGG | - | chr4_4:314119-314138 | Msa0662560:three_prime_UTR | 35.0% |
| !! | TAGTTCTAGTAGTGATGACA+AGG | - | chr4_4:314155-314174 | Msa0662560:three_prime_UTR | 35.0% |
| AATAAGAAAGGAACGTGTAG+AGG | + | chr4_4:314337-314356 | None:intergenic | 35.0% | |
| ACATAATTGGATCTTCATCG+AGG | + | chr4_4:315142-315161 | None:intergenic | 35.0% | |
| ATCCAATTATGTGTCCTGTA+TGG | - | chr4_4:315150-315169 | Msa0662560:intron | 35.0% | |
| !!! | CTTTTTCAAAGTCACCATAC+AGG | + | chr4_4:315167-315186 | None:intergenic | 35.0% |
| ! | GTATGGTGACTTTGAAAAAG+AGG | - | chr4_4:315167-315186 | Msa0662560:intron | 35.0% |
| ! | GTGACTTTGAAAAAGAGGAT+TGG | - | chr4_4:315172-315191 | Msa0662560:intron | 35.0% |
| ATTCAATTGGAGCAAGCATT+CGG | - | chr4_4:315379-315398 | Msa0662560:CDS | 35.0% | |
| AGATGGAATTCACACTGTTA+AGG | - | chr4_4:315642-315661 | Msa0662560:CDS | 35.0% | |
| TAGAAAATAGACAAGACTGG+AGG | - | chr4_4:315830-315849 | Msa0662560:intron | 35.0% | |
| AGAAAATAGACAAGACTGGA+GGG | - | chr4_4:315831-315850 | Msa0662560:intron | 35.0% | |
| CATTGTGATGTAGATGATGA+TGG | - | chr4_4:315887-315906 | Msa0662560:CDS | 35.0% | |
| TTAAAGACAAGGGAGGATAT+TGG | + | chr4_4:315941-315960 | None:intergenic | 35.0% | |
| ATCTCTCAATCCACATGAAA+AGG | - | chr4_4:316021-316040 | Msa0662560:CDS | 35.0% | |
| ! | CAAGTACAAACCTTTTCATG+TGG | + | chr4_4:316034-316053 | None:intergenic | 35.0% |
| TATTCACAGCCAAAGAAAGT+AGG | + | chr4_4:316060-316079 | None:intergenic | 35.0% | |
| GATCAAAACACTTCTGTCAT+TGG | - | chr4_4:316179-316198 | Msa0662560:CDS | 35.0% | |
| TACAACAATACATGGTATGG+TGG | - | chr4_4:316273-316292 | Msa0662560:CDS | 35.0% | |
| AGTGTACAAACTGCACAATA+TGG | - | chr4_4:316307-316326 | Msa0662560:CDS | 35.0% | |
| TGAAAAAGTCTGAGTTGTCT+AGG | - | chr4_4:316432-316451 | Msa0662560:intron | 35.0% | |
| TTGTAGAATAAGCACTCAAC+AGG | + | chr4_4:316546-316565 | None:intergenic | 35.0% | |
| CTTTGTGAGATTGAGATAGA+CGG | + | chr4_4:316607-316626 | None:intergenic | 35.0% | |
| TCTATCTCAATCTCACAAAG+TGG | - | chr4_4:316607-316626 | Msa0662560:intron | 35.0% | |
| TCTATTTGGAAGTTACACGT+TGG | - | chr4_4:316720-316739 | Msa0662560:intron | 35.0% | |
| TGTTTGCACAACAAAATTGG+GGG | + | chr4_4:316809-316828 | None:intergenic | 35.0% | |
| AGATTCGATCTACTCTCAAA+TGG | - | chr4_4:316863-316882 | Msa0662560:CDS | 35.0% | |
| TGTTGTATGTAGCTAGAAAG+AGG | - | chr4_4:316890-316909 | Msa0662560:intron | 35.0% | |
| GTTGTATGTAGCTAGAAAGA+GGG | - | chr4_4:316891-316910 | Msa0662560:intron | 35.0% | |
| !! | GCTTCATACTTTTTGCTTAC+AGG | + | chr4_4:317027-317046 | None:intergenic | 35.0% |
| ! | CGTACGGAAATAAAAGGTGT+TGG | + | chr4_4:314251-314270 | None:intergenic | 40.0% |
| TACATGCAGATGCAGAACAT+TGG | + | chr4_4:314314-314333 | None:intergenic | 40.0% | |
| AAACGCAAGATTGTTACTGG+CGG | + | chr4_4:314397-314416 | None:intergenic | 40.0% | |
| GCAAAACGCAAGATTGTTAC+TGG | + | chr4_4:314400-314419 | None:intergenic | 40.0% | |
| CGAACGTTTACTTCGAAAAG+TGG | - | chr4_4:314422-314441 | Msa0662560:CDS | 40.0% | |
| TGTCTTTCTTGCTTGCTTCA+TGG | - | chr4_4:314478-314497 | Msa0662560:CDS | 40.0% | |
| GTTCCTTAACTAGTTGCAAG+AGG | - | chr4_4:314552-314571 | Msa0662560:CDS | 40.0% | |
| TCTCCTCTTGCAACTAGTTA+AGG | + | chr4_4:314558-314577 | None:intergenic | 40.0% | |
| AATACCTTGAGGTTAGGTAG+TGG | + | chr4_4:314597-314616 | None:intergenic | 40.0% | |
| AATGTCCGAAATCAAAGCTG+AGG | - | chr4_4:315047-315066 | Msa0662560:CDS | 40.0% | |
| ATGTCCGAAATCAAAGCTGA+GGG | - | chr4_4:315048-315067 | Msa0662560:CDS | 40.0% | |
| ! | ATCTCCCTCAGCTTTGATTT+CGG | + | chr4_4:315055-315074 | None:intergenic | 40.0% |
| TCACGCAGTTCAATTTGAAG+TGG | + | chr4_4:315081-315100 | None:intergenic | 40.0% | |
| CACCATACAGGACACATAAT+TGG | + | chr4_4:315155-315174 | None:intergenic | 40.0% | |
| CAAATTGTACCTCCAAGAGT+TGG | - | chr4_4:315216-315235 | Msa0662560:intron | 40.0% | |
| AGTTGTCCATTTCCAACTCT+TGG | + | chr4_4:315231-315250 | None:intergenic | 40.0% | |
| GGAAATGGACAACTACTGAA+AGG | - | chr4_4:315237-315256 | Msa0662560:intron | 40.0% | |
| AGAGAAGAACCGGTCAATTT+CGG | - | chr4_4:315331-315350 | Msa0662560:CDS | 40.0% | |
| TTCAATTGGAGCAAGCATTC+GGG | - | chr4_4:315380-315399 | Msa0662560:CDS | 40.0% | |
| ! | AGGTAGAAGCGAACCTTTTA+AGG | - | chr4_4:315404-315423 | Msa0662560:CDS | 40.0% |
| CGAACATTCAGGACCTTAAA+AGG | + | chr4_4:315420-315439 | None:intergenic | 40.0% | |
| ! | TTTAAGGTCCTGAATGTTCG+AGG | - | chr4_4:315420-315439 | Msa0662560:CDS | 40.0% |
| TGATAAAGTATGGCGTCTGA+AGG | - | chr4_4:315579-315598 | Msa0662560:CDS | 40.0% | |
| GATAAAGTATGGCGTCTGAA+GGG | - | chr4_4:315580-315599 | Msa0662560:CDS | 40.0% | |
| ATAAAGTATGGCGTCTGAAG+GGG | - | chr4_4:315581-315600 | Msa0662560:CDS | 40.0% | |
| GTAAAGATGGTACACTTCAC+AGG | - | chr4_4:315608-315627 | Msa0662560:CDS | 40.0% | |
| GTACAAACTGCACAATATGG+TGG | - | chr4_4:316310-316329 | Msa0662560:CDS | 40.0% | |
| TGGAAAGTCAAACTGTTGCA+GGG | + | chr4_4:316347-316366 | None:intergenic | 40.0% | |
| TTGGAAAGTCAAACTGTTGC+AGG | + | chr4_4:316348-316367 | None:intergenic | 40.0% | |
| CAGGCCTGAATGATAGAATT+AGG | + | chr4_4:316527-316546 | None:intergenic | 40.0% | |
| !! | ATTTCTGGTTGGCATGGAAA+TGG | + | chr4_4:316580-316599 | None:intergenic | 40.0% |
| ! | ATCTCACAAAGTGGACTTGT+AGG | - | chr4_4:316616-316635 | Msa0662560:intron | 40.0% |
| TGTGATCAAATGGCAGCATT+AGG | - | chr4_4:316649-316668 | Msa0662560:intron | 40.0% | |
| ACCTCTTCTCCAGAAAAGTA+TGG | + | chr4_4:316688-316707 | None:intergenic | 40.0% | |
| !! | GTATCACTGGTTGGTCTATT+TGG | - | chr4_4:316706-316725 | Msa0662560:intron | 40.0% |
| TGCTCCGTCATCATAAACAA+AGG | + | chr4_4:316764-316783 | None:intergenic | 40.0% | |
| !! | TTTGTTTATGATGACGGAGC+AGG | - | chr4_4:316763-316782 | Msa0662560:intron | 40.0% |
| TGGATTGACCCTTAACGAGT+TGG | - | chr4_4:314954-314973 | Msa0662560:CDS | 45.0% | |
| ! | TGTGTTGGCCAACTCGTTAA+GGG | + | chr4_4:314965-314984 | None:intergenic | 45.0% |
| ! | ATGTGTTGGCCAACTCGTTA+AGG | + | chr4_4:314966-314985 | None:intergenic | 45.0% |
| AGTTGGCCAACACATATGAG+AGG | - | chr4_4:314971-314990 | Msa0662560:CDS | 45.0% | |
| TCTCCTCCTCTCATATGTGT+TGG | + | chr4_4:314980-314999 | None:intergenic | 45.0% | |
| AAATCAGCAACGCGTAGTCA+TGG | - | chr4_4:315107-315126 | Msa0662560:intron | 45.0% | |
| AAAAGAGGATTGGACAGCTG+AGG | - | chr4_4:315182-315201 | Msa0662560:intron | 45.0% | |
| GTACCTCCAAGAGTTGGAAA+TGG | - | chr4_4:315222-315241 | Msa0662560:intron | 45.0% | |
| TGTCCATTTCCAACTCTTGG+AGG | + | chr4_4:315228-315247 | None:intergenic | 45.0% | |
| GTCCTGAATGTTCGAGGAAA+GGG | - | chr4_4:315426-315445 | Msa0662560:CDS | 45.0% | |
| TACCCTTTCCTCGAACATTC+AGG | + | chr4_4:315431-315450 | None:intergenic | 45.0% | |
| CTGAAGGGGATACGTAAAGA+TGG | - | chr4_4:315595-315614 | Msa0662560:CDS | 45.0% | |
| ACAAGACTGGAGGGAAGTTA+TGG | - | chr4_4:315840-315859 | Msa0662560:CDS | 45.0% | |
| GACTTTCCAATTGCTCAGCA+AGG | - | chr4_4:316358-316377 | Msa0662560:intron | 45.0% | |
| ! | AGAGTACCTTGCTGAGCAAT+TGG | + | chr4_4:316367-316386 | None:intergenic | 45.0% |
| TAGGCGATGAGTCTTGAAGA+GGG | - | chr4_4:316451-316470 | Msa0662560:intron | 45.0% | |
| TTCCATGCCAACCAGAAATG+TGG | - | chr4_4:316581-316600 | Msa0662560:intron | 45.0% | |
| ! | ATGTCGTCGCCATACTTTTC+TGG | - | chr4_4:316676-316695 | Msa0662560:CDS | 45.0% |
| !! | GCCATACTTTTCTGGAGAAG+AGG | - | chr4_4:316684-316703 | Msa0662560:CDS | 45.0% |
| !! | TTCTGGAGAAGAGGTATCAC+TGG | - | chr4_4:316693-316712 | Msa0662560:CDS | 45.0% |
| GGGGGAAGAATAATGATTGC+TGG | + | chr4_4:316791-316810 | None:intergenic | 45.0% | |
| ATACCCAGTTAGCTAGCAGT+TGG | - | chr4_4:317165-317184 | Msa0662560:five_prime_UTR | 45.0% | |
| CATCCAACTGCTAGCTAACT+GGG | + | chr4_4:317171-317190 | None:intergenic | 45.0% | |
| !!! | ATTCAATTTTTTTTTTTTTT+TGG | + | chr4_4:314108-314127 | None:intergenic | 5.0% |
| !! | AAAAAAAAAAAAAAATTGAA+TGG | - | chr4_4:314107-314126 | Msa0662560:three_prime_UTR | 5.0% |
| !! | ATCGAAGAGGGCATCTCATG+TGG | - | chr4_4:314131-314150 | Msa0662560:three_prime_UTR | 50.0% |
| !! | TCGAAGAGGGCATCTCATGT+GGG | - | chr4_4:314132-314151 | Msa0662560:three_prime_UTR | 50.0% |
| ! | AGGTAGTGGTGGAGCTTATG+TGG | + | chr4_4:314583-314602 | None:intergenic | 50.0% |
| TCCACCACTACCTAACCTCA+AGG | - | chr4_4:314590-314609 | Msa0662560:CDS | 50.0% | |
| ! | ACCTTGAGGTTAGGTAGTGG+TGG | + | chr4_4:314594-314613 | None:intergenic | 50.0% |
| TGGCCAACACATATGAGAGG+AGG | - | chr4_4:314974-314993 | Msa0662560:CDS | 50.0% | |
| CAACGCGTAGTCATGGAAGA+AGG | - | chr4_4:315114-315133 | Msa0662560:intron | 50.0% | |
| AGAACCGGTCAATTTCGGCT+AGG | - | chr4_4:315336-315355 | Msa0662560:CDS | 50.0% | |
| GAACCGGTCAATTTCGGCTA+GGG | - | chr4_4:315337-315356 | Msa0662560:CDS | 50.0% | |
| AACCGGTCAATTTCGGCTAG+GGG | - | chr4_4:315338-315357 | Msa0662560:CDS | 50.0% | |
| AACCCCTAGCCGAAATTGAC+CGG | + | chr4_4:315343-315362 | None:intergenic | 50.0% | |
| ATTGGAGCAAGCATTCGGGA+AGG | - | chr4_4:315384-315403 | Msa0662560:CDS | 50.0% | |
| GGTCCTGAATGTTCGAGGAA+AGG | - | chr4_4:315425-315444 | Msa0662560:CDS | 50.0% | |
| CACAGGCAGTTGACATCAGA+TGG | - | chr4_4:315625-315644 | Msa0662560:CDS | 50.0% | |
| CTTCTGTCATTGGCAGTGCT+TGG | - | chr4_4:316189-316208 | Msa0662560:CDS | 50.0% | |
| CTAGGCGATGAGTCTTGAAG+AGG | - | chr4_4:316450-316469 | Msa0662560:intron | 50.0% | |
| CTGGTTGGCATGGAAATGGT+AGG | + | chr4_4:316576-316595 | None:intergenic | 50.0% | |
| !! | TAGACGGCCACATTTCTGGT+TGG | + | chr4_4:316591-316610 | None:intergenic | 50.0% |
| GAGATAGACGGCCACATTTC+TGG | + | chr4_4:316595-316614 | None:intergenic | 50.0% | |
| !! | GGAGAAGAGGTATCACTGGT+TGG | - | chr4_4:316697-316716 | Msa0662560:CDS | 50.0% |
| CCATCCAACTGCTAGCTAAC+TGG | + | chr4_4:317172-317191 | None:intergenic | 50.0% | |
| CCAGTTAGCTAGCAGTTGGA+TGG | - | chr4_4:317169-317188 | Msa0662560:five_prime_UTR | 50.0% | |
| CTGTCATTGGCAGTGCTTGG+TGG | - | chr4_4:316192-316211 | Msa0662560:CDS | 55.0% | |
| !! | GGCCACATTTCTGGTTGGCA+TGG | + | chr4_4:316586-316605 | None:intergenic | 55.0% |
| TAGCTAGCAGTTGGATGGCC+TGG | - | chr4_4:317174-317193 | Msa0662560:five_prime_UTR | 55.0% | |
| AGCTAGCAGTTGGATGGCCT+GGG | - | chr4_4:317175-317194 | Msa0662560:five_prime_UTR | 55.0% | |
| GCAAATGACAAAGCAGCCCC+AGG | + | chr4_4:317195-317214 | None:intergenic | 55.0% | |
| GCTAGCAGTTGGATGGCCTG+GGG | - | chr4_4:317176-317195 | Msa0662560:five_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 314000 | 317282 | 314000 | ID=Msa0662560;Name=Msa0662560 |
| chr4_4 | mRNA | 314000 | 317282 | 314000 | ID=Msa0662560-mRNA-1;Parent=Msa0662560;Name=Msa0662560-mRNA-1;_AED=0.12;_eAED=0.12;_QI=126|1|1|1|0.87|0.77|9|323|562 |
| chr4_4 | exon | 314000 | 314075 | 314000 | ID=Msa0662560-mRNA-1:exon:185;Parent=Msa0662560-mRNA-1 |
| chr4_4 | exon | 314096 | 314740 | 314096 | ID=Msa0662560-mRNA-1:exon:184;Parent=Msa0662560-mRNA-1 |
| chr4_4 | exon | 314903 | 315077 | 314903 | ID=Msa0662560-mRNA-1:exon:183;Parent=Msa0662560-mRNA-1 |
| chr4_4 | exon | 315240 | 315449 | 315240 | ID=Msa0662560-mRNA-1:exon:182;Parent=Msa0662560-mRNA-1 |
| chr4_4 | exon | 315574 | 315734 | 315574 | ID=Msa0662560-mRNA-1:exon:181;Parent=Msa0662560-mRNA-1 |
| chr4_4 | exon | 315835 | 316331 | 315835 | ID=Msa0662560-mRNA-1:exon:180;Parent=Msa0662560-mRNA-1 |
| chr4_4 | exon | 316671 | 316717 | 316671 | ID=Msa0662560-mRNA-1:exon:179;Parent=Msa0662560-mRNA-1 |
| chr4_4 | exon | 316839 | 316899 | 316839 | ID=Msa0662560-mRNA-1:exon:178;Parent=Msa0662560-mRNA-1 |
| chr4_4 | exon | 317017 | 317282 | 317017 | ID=Msa0662560-mRNA-1:exon:177;Parent=Msa0662560-mRNA-1 |
| chr4_4 | five_prime_UTR | 317157 | 317282 | 317157 | ID=Msa0662560-mRNA-1:five_prime_utr;Parent=Msa0662560-mRNA-1 |
| chr4_4 | CDS | 317017 | 317156 | 317017 | ID=Msa0662560-mRNA-1:cds;Parent=Msa0662560-mRNA-1 |
| chr4_4 | CDS | 316839 | 316899 | 316839 | ID=Msa0662560-mRNA-1:cds;Parent=Msa0662560-mRNA-1 |
| chr4_4 | CDS | 316671 | 316717 | 316671 | ID=Msa0662560-mRNA-1:cds;Parent=Msa0662560-mRNA-1 |
| chr4_4 | CDS | 315835 | 316331 | 315835 | ID=Msa0662560-mRNA-1:cds;Parent=Msa0662560-mRNA-1 |
| chr4_4 | CDS | 315574 | 315734 | 315574 | ID=Msa0662560-mRNA-1:cds;Parent=Msa0662560-mRNA-1 |
| chr4_4 | CDS | 315240 | 315449 | 315240 | ID=Msa0662560-mRNA-1:cds;Parent=Msa0662560-mRNA-1 |
| chr4_4 | CDS | 314903 | 315077 | 314903 | ID=Msa0662560-mRNA-1:cds;Parent=Msa0662560-mRNA-1 |
| chr4_4 | CDS | 314343 | 314740 | 314343 | ID=Msa0662560-mRNA-1:cds;Parent=Msa0662560-mRNA-1 |
| chr4_4 | three_prime_UTR | 314096 | 314342 | 314096 | ID=Msa0662560-mRNA-1:three_prime_utr;Parent=Msa0662560-mRNA-1 |
| chr4_4 | three_prime_UTR | 314000 | 314075 | 314000 | ID=Msa0662560-mRNA-1:three_prime_utr;Parent=Msa0662560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
