Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398880 | XP_013450446.1 | 91.312 | 564 | 47 | 1 | 1 | 562 | 1 | 564 | 0.0 | 1066 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398880 | sp|A0A1U8IPT1|CB60B_GOSHI | 34.560 | 489 | 270 | 14 | 54 | 528 | 44 | 496 | 3.15e-69 | 236 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398880 | A0A072U410 | 91.312 | 564 | 47 | 1 | 1 | 562 | 1 | 564 | 0.0 | 1066 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0086590 | Msa1398880 | 0.800328 | 1.517522e-48 | -8.615850e-47 |
| Msa1398880 | Msa1398890 | 0.817699 | 2.880274e-52 | -8.615850e-47 |
| Msa0662560 | Msa1398880 | 0.995951 | 1.057222e-221 | -8.615850e-47 |
| Msa0662570 | Msa1398880 | 0.820483 | 6.699314e-53 | -8.615850e-47 |
| Msa0688070 | Msa1398880 | 0.819811 | 9.548668e-53 | -8.615850e-47 |
| Msa1339450 | Msa1398880 | 0.817276 | 3.585513e-52 | -8.615850e-47 |
| Msa1084120 | Msa1398880 | 0.950232 | 2.515971e-108 | -8.615850e-47 |
| Msa0336250 | Msa1398880 | 0.802123 | 6.514501e-49 | -8.615850e-47 |
| Msa0347650 | Msa1398880 | 0.803417 | 3.520390e-49 | -8.615850e-47 |
| Msa1224480 | Msa1398880 | 0.818761 | 1.655502e-52 | -8.615850e-47 |
| Msa0903990 | Msa1398880 | 0.805110 | 1.563339e-49 | -8.615850e-47 |
| Msa0973600 | Msa1398880 | 0.800325 | 1.519789e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398880 | MtrunA17_Chr7g0271671 | 91.312 | 564 | 47 | 1 | 1 | 562 | 1 | 564 | 0.0 | 1066 |
| Msa1398880 | MtrunA17_Chr7g0271681 | 59.514 | 494 | 170 | 8 | 91 | 559 | 1 | 489 | 0.0 | 524 |
| Msa1398880 | MtrunA17_Chr7g0271691 | 37.236 | 521 | 287 | 16 | 37 | 545 | 20 | 512 | 7.56e-79 | 257 |
| Msa1398880 | MtrunA17_Chr6g0484121 | 33.753 | 397 | 228 | 15 | 1 | 383 | 1 | 376 | 3.43e-47 | 172 |
| Msa1398880 | MtrunA17_Chr6g0484111 | 31.881 | 436 | 254 | 15 | 1 | 423 | 1 | 406 | 1.22e-46 | 170 |
| Msa1398880 | MtrunA17_Chr6g0484131 | 33.753 | 397 | 228 | 15 | 1 | 383 | 1 | 376 | 3.18e-46 | 169 |
| Msa1398880 | MtrunA17_Chr8g0391211 | 37.658 | 316 | 176 | 8 | 55 | 358 | 116 | 422 | 4.38e-46 | 170 |
| Msa1398880 | MtrunA17_Chr2g0281171 | 33.430 | 344 | 206 | 8 | 56 | 387 | 52 | 384 | 5.28e-45 | 168 |
| Msa1398880 | MtrunA17_Chr8g0391221 | 36.709 | 316 | 179 | 8 | 55 | 358 | 45 | 351 | 9.62e-45 | 165 |
| Msa1398880 | MtrunA17_Chr4g0048161 | 33.721 | 344 | 205 | 8 | 56 | 387 | 51 | 383 | 1.49e-44 | 167 |
| Msa1398880 | MtrunA17_Chr2g0304831 | 33.134 | 335 | 215 | 6 | 56 | 385 | 50 | 380 | 1.64e-44 | 166 |
| Msa1398880 | MtrunA17_Chr4g0072691 | 32.836 | 335 | 216 | 6 | 56 | 385 | 19 | 349 | 2.57e-44 | 166 |
| Msa1398880 | MtrunA17_Chr4g0059411 | 39.781 | 274 | 155 | 8 | 82 | 350 | 65 | 333 | 1.63e-43 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398880 | AT5G26920.3 | 38.279 | 337 | 193 | 6 | 52 | 386 | 37 | 360 | 9.04e-65 | 218 |
| Msa1398880 | AT5G26920.1 | 38.279 | 337 | 193 | 6 | 52 | 386 | 37 | 360 | 8.36e-64 | 219 |
| Msa1398880 | AT5G26920.2 | 37.798 | 336 | 188 | 6 | 52 | 386 | 37 | 352 | 1.48e-61 | 213 |
| Msa1398880 | AT5G57580.1 | 36.283 | 339 | 201 | 8 | 56 | 385 | 47 | 379 | 1.91e-52 | 189 |
| Msa1398880 | AT4G25800.1 | 35.103 | 339 | 205 | 8 | 56 | 385 | 36 | 368 | 8.47e-49 | 179 |
| Msa1398880 | AT4G25800.2 | 35.103 | 339 | 205 | 8 | 56 | 385 | 36 | 368 | 8.47e-49 | 179 |
| Msa1398880 | AT2G24300.2 | 33.929 | 336 | 212 | 7 | 56 | 385 | 43 | 374 | 2.49e-44 | 166 |
| Msa1398880 | AT2G24300.3 | 33.929 | 336 | 212 | 7 | 56 | 385 | 47 | 378 | 2.54e-44 | 166 |
| Msa1398880 | AT2G24300.1 | 35.959 | 292 | 178 | 6 | 99 | 385 | 40 | 327 | 3.55e-43 | 162 |
| Msa1398880 | AT4G31000.1 | 33.136 | 338 | 208 | 9 | 56 | 385 | 47 | 374 | 2.37e-42 | 160 |
| Msa1398880 | AT5G62570.4 | 34.139 | 331 | 205 | 10 | 28 | 351 | 13 | 337 | 2.08e-41 | 154 |
| Msa1398880 | AT5G62570.1 | 34.139 | 331 | 205 | 10 | 28 | 351 | 13 | 337 | 4.28e-41 | 155 |
| Msa1398880 | AT5G62570.2 | 35.690 | 297 | 182 | 8 | 59 | 351 | 31 | 322 | 4.35e-41 | 155 |
| Msa1398880 | AT1G73805.1 | 33.634 | 333 | 202 | 11 | 52 | 377 | 42 | 362 | 1.30e-40 | 153 |
| Msa1398880 | AT2G18750.3 | 31.940 | 335 | 217 | 7 | 56 | 385 | 53 | 381 | 2.68e-40 | 155 |
| Msa1398880 | AT2G18750.2 | 31.940 | 335 | 217 | 7 | 56 | 385 | 53 | 381 | 2.68e-40 | 155 |
| Msa1398880 | AT2G18750.1 | 31.940 | 335 | 217 | 7 | 56 | 385 | 53 | 381 | 2.68e-40 | 155 |
| Msa1398880 | AT5G62570.3 | 35.125 | 279 | 173 | 6 | 28 | 302 | 13 | 287 | 4.97e-36 | 137 |
| Msa1398880 | AT4G31000.2 | 32.534 | 292 | 168 | 8 | 99 | 385 | 86 | 353 | 8.62e-33 | 132 |
Find 124 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATCACTGGTTGGTCTATT+TGG | 0.168608 | tig0022300:-46036 | Msa1398880:CDS |
| GAGATAGACGGCCACATTTC+TGG | 0.180333 | tig0022300:+46150 | None:intergenic |
| TGATGTTTGCACAACAAAAT+TGG | 0.211587 | tig0022300:+45933 | None:intergenic |
| GACATTGTGAAAATTGTTTC+AGG | 0.234773 | tig0022300:+47712 | None:intergenic |
| CGAACATTCAGGACCTTAAA+AGG | 0.238490 | tig0022300:+47325 | None:intergenic |
| TTCTTACTTCTTAGTCTATA+AGG | 0.280469 | tig0022300:+45629 | None:intergenic |
| CACCATACAGGACACATAAT+TGG | 0.280822 | tig0022300:+47590 | None:intergenic |
| CCATCCAACTGCTAGCTAAC+TGG | 0.287391 | tig0022300:+45573 | None:intergenic |
| GATGTTTGCACAACAAAATT+GGG | 0.319284 | tig0022300:+45934 | None:intergenic |
| TTGGAAAGTCAAACTGTTGC+AGG | 0.322001 | tig0022300:+46397 | None:intergenic |
| TACCCTTTCCTCGAACATTC+AGG | 0.328468 | tig0022300:+47314 | None:intergenic |
| ATCTTAGTGCTTCTTGTGTT+TGG | 0.331751 | tig0022300:-48709 | Msa1398880:five_prime_UTR |
| ATCTCCCTCAGCTTTGATTT+CGG | 0.333180 | tig0022300:+47690 | None:intergenic |
| AAAACACGTACGGAAATAAA+AGG | 0.334232 | tig0022300:+48489 | None:intergenic |
| AGAGAAGAACCGGTCAATTT+CGG | 0.341595 | tig0022300:-47411 | Msa1398880:CDS |
| TGTGATCAAATGGCAGCATT+AGG | 0.348917 | tig0022300:-46093 | Msa1398880:CDS |
| TTAGTTCAATCTAATTCAAT+TGG | 0.354677 | tig0022300:-47376 | Msa1398880:CDS |
| CCATGTATTGTTGTATCAAT+TGG | 0.354774 | tig0022300:+46477 | None:intergenic |
| ATTCTCTTAGTACTAGTAGA+AGG | 0.362152 | tig0022300:+48554 | None:intergenic |
| CATTATTGAATGATAAAGTA+TGG | 0.373290 | tig0022300:-47173 | Msa1398880:CDS |
| AGTTGTCCATTTCCAACTCT+TGG | 0.375977 | tig0022300:+47514 | None:intergenic |
| ATGTGTTGGCCAACTCGTTA+AGG | 0.382699 | tig0022300:+47779 | None:intergenic |
| TTAAAGACAAGGGAGGATAT+TGG | 0.397067 | tig0022300:+46804 | None:intergenic |
| CATACTTTATCATTCAATAA+TGG | 0.400855 | tig0022300:+47174 | None:intergenic |
| ACCTCTTCTCCAGAAAAGTA+TGG | 0.401455 | tig0022300:+46057 | None:intergenic |
| GCAAAACGCAAGATTGTTAC+TGG | 0.404835 | tig0022300:+48345 | None:intergenic |
| GTCCTGAATGTTCGAGGAAA+GGG | 0.408908 | tig0022300:-47316 | Msa1398880:intron |
| ATTCAATTGGAGCAAGCATT+CGG | 0.413576 | tig0022300:-47363 | Msa1398880:CDS |
| AAAATCATTACACTAAGAAA+TGG | 0.418028 | tig0022300:-47478 | Msa1398880:CDS |
| AGAGTACCTTGCTGAGCAAT+TGG | 0.420158 | tig0022300:+46378 | None:intergenic |
| TTCAATTGGAGCAAGCATTC+GGG | 0.420187 | tig0022300:-47362 | Msa1398880:CDS |
| ATCTCACAAAGTGGACTTGT+AGG | 0.422654 | tig0022300:-46126 | Msa1398880:CDS |
| ATTTCTGGTTGGCATGGAAA+TGG | 0.424406 | tig0022300:+46165 | None:intergenic |
| AGATGGAATTCACACTGTTA+AGG | 0.427571 | tig0022300:-47100 | Msa1398880:CDS |
| ACAAGACTGGAGGGAAGTTA+TGG | 0.438740 | tig0022300:-46902 | Msa1398880:CDS |
| TTGTAGAATAAGCACTCAAC+AGG | 0.441707 | tig0022300:+46199 | None:intergenic |
| CGAACGTTTACTTCGAAAAG+TGG | 0.444298 | tig0022300:-48320 | Msa1398880:intron |
| AATAGAAATACCTTGAGGTT+AGG | 0.444750 | tig0022300:+48142 | None:intergenic |
| ATCTCTCAATCCACATGAAA+AGG | 0.445518 | tig0022300:-46721 | Msa1398880:intron |
| GATATATCAAAGAGAAGAAC+CGG | 0.455709 | tig0022300:-47421 | Msa1398880:CDS |
| TTCTGGAGAAGAGGTATCAC+TGG | 0.456301 | tig0022300:-46049 | Msa1398880:CDS |
| CTGTCATTGGCAGTGCTTGG+TGG | 0.456561 | tig0022300:-46550 | Msa1398880:intron |
| TTTAAGGTCCTGAATGTTCG+AGG | 0.478176 | tig0022300:-47322 | Msa1398880:CDS |
| TGTGTTGGCCAACTCGTTAA+GGG | 0.482570 | tig0022300:+47780 | None:intergenic |
| AACCCCTAGCCGAAATTGAC+CGG | 0.487536 | tig0022300:+47402 | None:intergenic |
| TTTGTTTATGATGACGGAGC+AGG | 0.488123 | tig0022300:-45979 | Msa1398880:CDS |
| CATTGTGATGTAGATGATGA+TGG | 0.491743 | tig0022300:-46855 | Msa1398880:CDS |
| GTACCTCCAAGAGTTGGAAA+TGG | 0.493683 | tig0022300:-47520 | Msa1398880:CDS |
| GAACCGGTCAATTTCGGCTA+GGG | 0.497068 | tig0022300:-47405 | Msa1398880:CDS |
| TGATACAACAATACATGGTA+TGG | 0.502118 | tig0022300:-46472 | Msa1398880:CDS |
| AGTGTACAAACTGCACAATA+TGG | 0.502488 | tig0022300:-46435 | Msa1398880:CDS |
| TATCTGTAAACTCAATCTCT+TGG | 0.507557 | tig0022300:+47440 | None:intergenic |
| TGTCCATTTCCAACTCTTGG+AGG | 0.507896 | tig0022300:+47517 | None:intergenic |
| CATCCAACTGCTAGCTAACT+GGG | 0.509982 | tig0022300:+45574 | None:intergenic |
| AGGTAGTGGTGGAGCTTATG+TGG | 0.510631 | tig0022300:+48162 | None:intergenic |
| AGATTCGATCTACTCTCAAA+TGG | 0.511809 | tig0022300:-45879 | Msa1398880:CDS |
| TAACGAAGATTCATTAAGAA+AGG | 0.512049 | tig0022300:-47055 | Msa1398880:intron |
| CCAATTGATACAACAATACA+TGG | 0.513913 | tig0022300:-46477 | Msa1398880:CDS |
| AAATTGAATGGCATCGAAGA+GGG | 0.521226 | tig0022300:-48624 | Msa1398880:exon |
| GGCCACATTTCTGGTTGGCA+TGG | 0.528202 | tig0022300:+46159 | None:intergenic |
| AGTCTTATATTTCAATCTAG+AGG | 0.534004 | tig0022300:+45664 | None:intergenic |
| CACAGGCAGTTGACATCAGA+TGG | 0.542027 | tig0022300:-47117 | Msa1398880:CDS |
| TGATAAAGTATGGCGTCTGA+AGG | 0.545484 | tig0022300:-47163 | Msa1398880:CDS |
| AAATAGAAAATAGACAAGAC+TGG | 0.545967 | tig0022300:-46915 | Msa1398880:intron |
| TGTTGTATGTAGCTAGAAAG+AGG | 0.546402 | tig0022300:-45852 | Msa1398880:CDS |
| ATGTCCTTTGTTTATGATGA+CGG | 0.547991 | tig0022300:-45985 | Msa1398880:CDS |
| AAATCAGCAACGCGTAGTCA+TGG | 0.550182 | tig0022300:-47635 | Msa1398880:CDS |
| GATAAAGTATGGCGTCTGAA+GGG | 0.551278 | tig0022300:-47162 | Msa1398880:CDS |
| CAAATTGTACCTCCAAGAGT+TGG | 0.551489 | tig0022300:-47526 | Msa1398880:CDS |
| ATCGAAGAGGGCATCTCATG+TGG | 0.556518 | tig0022300:-48612 | Msa1398880:CDS |
| GTAAAGATGGTACACTTCAC+AGG | 0.556690 | tig0022300:-47134 | Msa1398880:CDS |
| TCACGCAGTTCAATTTGAAG+TGG | 0.561167 | tig0022300:+47664 | None:intergenic |
| ATCCAATTATGTGTCCTGTA+TGG | 0.561327 | tig0022300:-47592 | Msa1398880:CDS |
| ATACCCAGTTAGCTAGCAGT+TGG | 0.564347 | tig0022300:-45577 | Msa1398880:intron |
| TGGATTGACCCTTAACGAGT+TGG | 0.565769 | tig0022300:-47788 | Msa1398880:CDS |
| ACCTTGAGGTTAGGTAGTGG+TGG | 0.567120 | tig0022300:+48151 | None:intergenic |
| GTTCCTTAACTAGTTGCAAG+AGG | 0.567391 | tig0022300:-48190 | Msa1398880:intron |
| ATGTTTGCACAACAAAATTG+GGG | 0.568691 | tig0022300:+45935 | None:intergenic |
| TAAAATTGAATTAAAGACAA+GGG | 0.568925 | tig0022300:+46794 | None:intergenic |
| CTGGTTGGCATGGAAATGGT+AGG | 0.572443 | tig0022300:+46169 | None:intergenic |
| CGTACGGAAATAAAAGGTGT+TGG | 0.572739 | tig0022300:+48495 | None:intergenic |
| GGTCCTGAATGTTCGAGGAA+AGG | 0.575080 | tig0022300:-47317 | Msa1398880:CDS |
| AACCGGTCAATTTCGGCTAG+GGG | 0.578024 | tig0022300:-47404 | Msa1398880:CDS |
| AGAACCGGTCAATTTCGGCT+AGG | 0.587448 | tig0022300:-47406 | Msa1398880:CDS |
| AGAAAATAGACAAGACTGGA+GGG | 0.587832 | tig0022300:-46911 | Msa1398880:CDS |
| GGAGAAGAGGTATCACTGGT+TGG | 0.588993 | tig0022300:-46045 | Msa1398880:CDS |
| TCTCCTCCTCTCATATGTGT+TGG | 0.590047 | tig0022300:+47765 | None:intergenic |
| CTGAAGGGGATACGTAAAGA+TGG | 0.592154 | tig0022300:-47147 | Msa1398880:CDS |
| CAACGCGTAGTCATGGAAGA+AGG | 0.592392 | tig0022300:-47628 | Msa1398880:CDS |
| TCTATCTCAATCTCACAAAG+TGG | 0.592542 | tig0022300:-46135 | Msa1398880:CDS |
| GACTTTCCAATTGCTCAGCA+AGG | 0.595283 | tig0022300:-46384 | Msa1398880:intron |
| TGGAAAGTCAAACTGTTGCA+GGG | 0.596726 | tig0022300:+46398 | None:intergenic |
| TAGACGGCCACATTTCTGGT+TGG | 0.599588 | tig0022300:+46154 | None:intergenic |
| ATAAAGTATGGCGTCTGAAG+GGG | 0.600694 | tig0022300:-47161 | Msa1398880:CDS |
| TTCCATGCCAACCAGAAATG+TGG | 0.602938 | tig0022300:-46161 | Msa1398880:CDS |
| CTTTATCATTCAATAATGGA+CGG | 0.610044 | tig0022300:+47178 | None:intergenic |
| ATGTCCGAAATCAAAGCTGA+GGG | 0.610692 | tig0022300:-47694 | Msa1398880:CDS |
| AATTGAATTAAAGACAAGGG+AGG | 0.612137 | tig0022300:+46797 | None:intergenic |
| TCCACCACTACCTAACCTCA+AGG | 0.613550 | tig0022300:-48152 | Msa1398880:intron |
| GTTGTATGTAGCTAGAAAGA+GGG | 0.617369 | tig0022300:-45851 | Msa1398880:CDS |
| GGAAATGGACAACTACTGAA+AGG | 0.620282 | tig0022300:-47505 | Msa1398880:CDS |
| AATACCTTGAGGTTAGGTAG+TGG | 0.621059 | tig0022300:+48148 | None:intergenic |
| AATGTCCGAAATCAAAGCTG+AGG | 0.622266 | tig0022300:-47695 | Msa1398880:CDS |
| CTTTGTGAGATTGAGATAGA+CGG | 0.623813 | tig0022300:+46138 | None:intergenic |
| ATTGTTGTATCAATTGGCAA+TGG | 0.633369 | tig0022300:+46483 | None:intergenic |
| TAGTTCTAGTAGTGATGACA+AGG | 0.633706 | tig0022300:-48588 | Msa1398880:CDS |
| TTAAAATTGAATTAAAGACA+AGG | 0.637130 | tig0022300:+46793 | None:intergenic |
| AAAATTGAATGGCATCGAAG+AGG | 0.644164 | tig0022300:-48625 | Msa1398880:exon |
| TACAACAATACATGGTATGG+TGG | 0.645400 | tig0022300:-46469 | Msa1398880:CDS |
| AAAAGAGGATTGGACAGCTG+AGG | 0.645437 | tig0022300:-47560 | Msa1398880:CDS |
| TAGAAAATAGACAAGACTGG+AGG | 0.645484 | tig0022300:-46912 | Msa1398880:CDS |
| ATTGTGATGTAGATGATGAT+GGG | 0.651673 | tig0022300:-46854 | Msa1398880:CDS |
| TGGCCAACACATATGAGAGG+AGG | 0.659498 | tig0022300:-47768 | Msa1398880:CDS |
| TGCTCCGTCATCATAAACAA+AGG | 0.659879 | tig0022300:+45981 | None:intergenic |
| TCGAAGAGGGCATCTCATGT+GGG | 0.661983 | tig0022300:-48611 | Msa1398880:CDS |
| GTACTAAGAGAATAAAACAT+GGG | 0.665045 | tig0022300:-48544 | Msa1398880:CDS |
| TCTATTTGGAAGTTACACGT+TGG | 0.667355 | tig0022300:-46022 | Msa1398880:CDS |
| ATTGGAGCAAGCATTCGGGA+AGG | 0.671894 | tig0022300:-47358 | Msa1398880:CDS |
| AGTACTAAGAGAATAAAACA+TGG | 0.690543 | tig0022300:-48545 | Msa1398880:CDS |
| AGTTGGCCAACACATATGAG+AGG | 0.691689 | tig0022300:-47771 | Msa1398880:CDS |
| TGTTTGCACAACAAAATTGG+GGG | 0.694097 | tig0022300:+45936 | None:intergenic |
| AAACGCAAGATTGTTACTGG+CGG | 0.706358 | tig0022300:+48348 | None:intergenic |
| GTACAAACTGCACAATATGG+TGG | 0.713505 | tig0022300:-46432 | Msa1398880:CDS |
| ACATAATTGGATCTTCATCG+AGG | 0.760970 | tig0022300:+47603 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAAATACATTTACTTTT+TGG | - | tig0022300:45552-45571 | Msa1398880:intron | 10.0% |
| !!! | TAATACAAAATTCATTTTAA+AGG | + | tig0022300:46227-46246 | None:intergenic | 10.0% |
| !!! | TTTTACAAAATTTATTTTTG+TGG | + | tig0022300:46277-46296 | None:intergenic | 10.0% |
| !!! | ATACTATTTCATATAATTTT+TGG | - | tig0022300:47279-47298 | Msa1398880:intron | 10.0% |
| !!! | ATATATACACAATTATATTT+TGG | + | tig0022300:47615-47634 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTGTTGTTGAAA+AGG | + | tig0022300:45578-45597 | None:intergenic | 15.0% |
| !! | AAAATAAAATAAAACACGTA+CGG | + | tig0022300:45748-45767 | None:intergenic | 15.0% |
| !!! | ATTTTTTTACATTTTGTTAG+AGG | + | tig0022300:46945-46964 | None:intergenic | 15.0% |
| !! | AAAATGTAAAAAAATGTACA+TGG | - | tig0022300:46950-46969 | Msa1398880:intron | 15.0% |
| !! | AAATGTAAAAAAATGTACAT+GGG | - | tig0022300:46951-46970 | Msa1398880:intron | 15.0% |
| !! | TAAAATTGAATTAAAGACAA+GGG | + | tig0022300:47433-47452 | None:intergenic | 15.0% |
| !! | TTAAAATTGAATTAAAGACA+AGG | + | tig0022300:47434-47453 | None:intergenic | 15.0% |
| !!! | TGTCTTTAATTCAATTTTAA+AGG | - | tig0022300:47434-47453 | Msa1398880:CDS | 15.0% |
| !! | AATTGAAACTGAAAAAATAT+TGG | - | tig0022300:48318-48337 | Msa1398880:intron | 15.0% |
| !!! | ACAATTTTCAATTTTTTACA+CGG | + | tig0022300:48732-48751 | None:intergenic | 15.0% |
| !! | AAAAAAATAGAAATACCTTG+AGG | + | tig0022300:46090-46109 | None:intergenic | 20.0% |
| !! | TTAGTTGTTAAAAATGTAGA+TGG | - | tig0022300:46126-46145 | Msa1398880:CDS | 20.0% |
| !!! | GAATTTTGTATTAATTTGAG+TGG | - | tig0022300:46234-46253 | Msa1398880:intron | 20.0% |
| !!! | TACAAAATTTATTTTTGTGG+TGG | + | tig0022300:46274-46293 | None:intergenic | 20.0% |
| !! | AAAATCATTACACTAAGAAA+TGG | - | tig0022300:46746-46765 | Msa1398880:CDS | 20.0% |
| !! | TTAGTTCAATCTAATTCAAT+TGG | - | tig0022300:46848-46867 | Msa1398880:CDS | 20.0% |
| !! | CATACTTTATCATTCAATAA+TGG | + | tig0022300:47053-47072 | None:intergenic | 20.0% |
| !! | CATTATTGAATGATAAAGTA+TGG | - | tig0022300:47051-47070 | Msa1398880:intron | 20.0% |
| !!! | TTTCATATAATTTTTGGCTT+TGG | - | tig0022300:47285-47304 | Msa1398880:intron | 20.0% |
| !!! | TAATTCAATTTTAAAGGTTG+TGG | - | tig0022300:47440-47459 | Msa1398880:CDS | 20.0% |
| ! | AGTACTAAGAGAATAAAACA+TGG | - | tig0022300:45679-45698 | Msa1398880:three_prime_UTR | 25.0% |
| ! | GTACTAAGAGAATAAAACAT+GGG | - | tig0022300:45680-45699 | Msa1398880:three_prime_UTR | 25.0% |
| !! | AAAGTAAGAGTATGAATGAT+TGG | + | tig0022300:45938-45957 | None:intergenic | 25.0% |
| !! | TTACATTTTGTTAGAGGTTT+AGG | + | tig0022300:46939-46958 | None:intergenic | 25.0% |
| !! | CTTTATCATTCAATAATGGA+CGG | + | tig0022300:47049-47068 | None:intergenic | 25.0% |
| ! | TAACGAAGATTCATTAAGAA+AGG | - | tig0022300:47169-47188 | Msa1398880:CDS | 25.0% |
| ! | AAATAGAAAATAGACAAGAC+TGG | - | tig0022300:47309-47328 | Msa1398880:intron | 25.0% |
| !! | TATTTGGAGTGAACTTTATA+TGG | - | tig0022300:47560-47579 | Msa1398880:CDS | 25.0% |
| !! | ATATTCTGCATAAACACTTT+TGG | - | tig0022300:47877-47896 | Msa1398880:intron | 25.0% |
| ! | ATATCCTAATTCTATCATTC+AGG | - | tig0022300:48002-48021 | Msa1398880:intron | 25.0% |
| !! | TTCTGAATTTTGTGATCAAA+TGG | - | tig0022300:48121-48140 | Msa1398880:intron | 25.0% |
| ! | TTTGCTTACTCAAAAAATAC+TGG | - | tig0022300:48447-48466 | Msa1398880:intron | 25.0% |
| !! | AGTCTTATATTTCAATCTAG+AGG | + | tig0022300:48563-48582 | None:intergenic | 25.0% |
| ! | TTCTTACTTCTTAGTCTATA+AGG | + | tig0022300:48598-48617 | None:intergenic | 25.0% |
| ATTCTCTTAGTACTAGTAGA+AGG | + | tig0022300:45673-45692 | None:intergenic | 30.0% | |
| !!! | ATCTCTTTTTGTTGTTCTTC+TGG | + | tig0022300:45709-45728 | None:intergenic | 30.0% |
| AAAACACGTACGGAAATAAA+AGG | + | tig0022300:45738-45757 | None:intergenic | 30.0% | |
| AATAAGAAAGGAACATGTAG+AGG | + | tig0022300:45819-45838 | None:intergenic | 30.0% | |
| GAAGTCAAGTCAAATAAGAA+AGG | + | tig0022300:45831-45850 | None:intergenic | 30.0% | |
| TGCTTCATGGATTCTAATAA+TGG | - | tig0022300:45973-45992 | Msa1398880:CDS | 30.0% | |
| CAGTTAATAGCATCAAAGAT+TGG | + | tig0022300:46002-46021 | None:intergenic | 30.0% | |
| CAATCTTTGATGCTATTAAC+TGG | - | tig0022300:46000-46019 | Msa1398880:CDS | 30.0% | |
| AATAGAAATACCTTGAGGTT+AGG | + | tig0022300:46085-46104 | None:intergenic | 30.0% | |
| ! | ATTAATTTGAGTGGTGAAAG+TGG | - | tig0022300:46243-46262 | Msa1398880:intron | 30.0% |
| ! | TAGCCAAATTTAAGACCTAA+AGG | - | tig0022300:46323-46342 | Msa1398880:intron | 30.0% |
| TTGCCTTTAGGTCTTAAATT+TGG | + | tig0022300:46329-46348 | None:intergenic | 30.0% | |
| ! | AAGTCTTGATTTTTGCCTTT+AGG | + | tig0022300:46341-46360 | None:intergenic | 30.0% |
| ! | TTGTGTTTCTAATTTAGCTG+TGG | - | tig0022300:46416-46435 | Msa1398880:CDS | 30.0% |
| GACATTGTGAAAATTGTTTC+AGG | + | tig0022300:46515-46534 | None:intergenic | 30.0% | |
| TATCTGTAAACTCAATCTCT+TGG | + | tig0022300:46787-46806 | None:intergenic | 30.0% | |
| GATATATCAAAGAGAAGAAC+CGG | - | tig0022300:46803-46822 | Msa1398880:CDS | 30.0% | |
| AGCTCTTGAAGTTATTAGTT+TGG | - | tig0022300:47249-47268 | Msa1398880:intron | 30.0% | |
| ATTGTGATGTAGATGATGAT+GGG | - | tig0022300:47370-47389 | Msa1398880:CDS | 30.0% | |
| AATTGAATTAAAGACAAGGG+AGG | + | tig0022300:47430-47449 | None:intergenic | 30.0% | |
| !! | TTCAATTTTAAAGGTTGTGG+AGG | - | tig0022300:47443-47462 | Msa1398880:CDS | 30.0% |
| TACTTGTATCCTACTTTCTT+TGG | - | tig0022300:47530-47549 | Msa1398880:CDS | 30.0% | |
| TTTCTTTGGCTGTGAATATT+TGG | - | tig0022300:47544-47563 | Msa1398880:CDS | 30.0% | |
| TTTGATCATATCAGGTTAAG+AGG | + | tig0022300:47648-47667 | None:intergenic | 30.0% | |
| !!! | AGAAGTGTTTTGATCATATC+AGG | + | tig0022300:47656-47675 | None:intergenic | 30.0% |
| ATTGTTGTATCAATTGGCAA+TGG | + | tig0022300:47744-47763 | None:intergenic | 30.0% | |
| CCATGTATTGTTGTATCAAT+TGG | + | tig0022300:47750-47769 | None:intergenic | 30.0% | |
| CCAATTGATACAACAATACA+TGG | - | tig0022300:47747-47766 | Msa1398880:CDS | 30.0% | |
| TGATACAACAATACATGGTA+TGG | - | tig0022300:47752-47771 | Msa1398880:CDS | 30.0% | |
| ! | ATGTCCTTTGTTTATGATGA+CGG | - | tig0022300:48239-48258 | Msa1398880:intron | 30.0% |
| ATGTTTGCACAACAAAATTG+GGG | + | tig0022300:48292-48311 | None:intergenic | 30.0% | |
| GATGTTTGCACAACAAAATT+GGG | + | tig0022300:48293-48312 | None:intergenic | 30.0% | |
| TGATGTTTGCACAACAAAAT+TGG | + | tig0022300:48294-48313 | None:intergenic | 30.0% | |
| ! | AAGCAAAAAGCATGAACTAA+GGG | + | tig0022300:48434-48453 | None:intergenic | 30.0% |
| ! | TAAGCAAAAAGCATGAACTA+AGG | + | tig0022300:48435-48454 | None:intergenic | 30.0% |
| ATCTTAGTGCTTCTTGTGTT+TGG | - | tig0022300:45515-45534 | Msa1398880:three_prime_UTR | 35.0% | |
| ! | AAAATTGAATGGCATCGAAG+AGG | - | tig0022300:45599-45618 | Msa1398880:three_prime_UTR | 35.0% |
| ! | AAATTGAATGGCATCGAAGA+GGG | - | tig0022300:45600-45619 | Msa1398880:three_prime_UTR | 35.0% |
| !! | TAGTTCTAGTAGTGATGACA+AGG | - | tig0022300:45636-45655 | Msa1398880:three_prime_UTR | 35.0% |
| ACATAATTGGATCTTCATCG+AGG | + | tig0022300:46624-46643 | None:intergenic | 35.0% | |
| ATCCAATTATGTGTCCTGTA+TGG | - | tig0022300:46632-46651 | Msa1398880:intron | 35.0% | |
| !!! | CTTTTTCAAAGTCACCATAC+AGG | + | tig0022300:46649-46668 | None:intergenic | 35.0% |
| ! | GTATGGTGACTTTGAAAAAG+AGG | - | tig0022300:46649-46668 | Msa1398880:intron | 35.0% |
| ! | GTGACTTTGAAAAAGAGGAT+TGG | - | tig0022300:46654-46673 | Msa1398880:intron | 35.0% |
| ATTCAATTGGAGCAAGCATT+CGG | - | tig0022300:46861-46880 | Msa1398880:CDS | 35.0% | |
| AGATGGAATTCACACTGTTA+AGG | - | tig0022300:47124-47143 | Msa1398880:CDS | 35.0% | |
| TAGAAAATAGACAAGACTGG+AGG | - | tig0022300:47312-47331 | Msa1398880:intron | 35.0% | |
| AGAAAATAGACAAGACTGGA+GGG | - | tig0022300:47313-47332 | Msa1398880:intron | 35.0% | |
| CATTGTGATGTAGATGATGA+TGG | - | tig0022300:47369-47388 | Msa1398880:CDS | 35.0% | |
| TTAAAGACAAGGGAGGATAT+TGG | + | tig0022300:47423-47442 | None:intergenic | 35.0% | |
| ATCTCTCAATCCACATGAAA+AGG | - | tig0022300:47503-47522 | Msa1398880:CDS | 35.0% | |
| ! | CAAGTACAAACCTTTTCATG+TGG | + | tig0022300:47516-47535 | None:intergenic | 35.0% |
| TATTCACAGCCAAAGAAAGT+AGG | + | tig0022300:47542-47561 | None:intergenic | 35.0% | |
| GATCAAAACACTTCTGTCAT+TGG | - | tig0022300:47661-47680 | Msa1398880:CDS | 35.0% | |
| TACAACAATACATGGTATGG+TGG | - | tig0022300:47755-47774 | Msa1398880:CDS | 35.0% | |
| AGTGTACAAACTGCACAATA+TGG | - | tig0022300:47789-47808 | Msa1398880:CDS | 35.0% | |
| TGAAAAAGTCTGAGTTGTCT+AGG | - | tig0022300:47914-47933 | Msa1398880:intron | 35.0% | |
| TTGTAGAATAAGCACTCAAC+AGG | + | tig0022300:48028-48047 | None:intergenic | 35.0% | |
| CTTTGTGAGATTGAGATAGA+CGG | + | tig0022300:48089-48108 | None:intergenic | 35.0% | |
| TCTATCTCAATCTCACAAAG+TGG | - | tig0022300:48089-48108 | Msa1398880:intron | 35.0% | |
| TCTATTTGGAAGTTACACGT+TGG | - | tig0022300:48202-48221 | Msa1398880:intron | 35.0% | |
| TGTTTGCACAACAAAATTGG+GGG | + | tig0022300:48291-48310 | None:intergenic | 35.0% | |
| AGATTCGATCTACTCTCAAA+TGG | - | tig0022300:48345-48364 | Msa1398880:CDS | 35.0% | |
| TGTTGTATGTAGCTAGAAAG+AGG | - | tig0022300:48372-48391 | Msa1398880:intron | 35.0% | |
| GTTGTATGTAGCTAGAAAGA+GGG | - | tig0022300:48373-48392 | Msa1398880:intron | 35.0% | |
| !! | GCTTCATACTTTTTGCTTAC+AGG | + | tig0022300:48509-48528 | None:intergenic | 35.0% |
| ! | CGTACGGAAATAAAAGGTGT+TGG | + | tig0022300:45732-45751 | None:intergenic | 40.0% |
| TACATGCAGATGCAGAACAT+TGG | + | tig0022300:45796-45815 | None:intergenic | 40.0% | |
| AAACGCAAGATTGTTACTGG+CGG | + | tig0022300:45879-45898 | None:intergenic | 40.0% | |
| GCAAAACGCAAGATTGTTAC+TGG | + | tig0022300:45882-45901 | None:intergenic | 40.0% | |
| CGAACGTTTACTTCGAAAAG+TGG | - | tig0022300:45904-45923 | Msa1398880:CDS | 40.0% | |
| TGTCTTTCTTGCTTGCTTCA+TGG | - | tig0022300:45960-45979 | Msa1398880:CDS | 40.0% | |
| GTTCCTTAACTAGTTGCAAG+AGG | - | tig0022300:46034-46053 | Msa1398880:CDS | 40.0% | |
| TCTCCTCTTGCAACTAGTTA+AGG | + | tig0022300:46040-46059 | None:intergenic | 40.0% | |
| AATACCTTGAGGTTAGGTAG+TGG | + | tig0022300:46079-46098 | None:intergenic | 40.0% | |
| AATGTCCGAAATCAAAGCTG+AGG | - | tig0022300:46529-46548 | Msa1398880:CDS | 40.0% | |
| ATGTCCGAAATCAAAGCTGA+GGG | - | tig0022300:46530-46549 | Msa1398880:CDS | 40.0% | |
| ! | ATCTCCCTCAGCTTTGATTT+CGG | + | tig0022300:46537-46556 | None:intergenic | 40.0% |
| TCACGCAGTTCAATTTGAAG+TGG | + | tig0022300:46563-46582 | None:intergenic | 40.0% | |
| CACCATACAGGACACATAAT+TGG | + | tig0022300:46637-46656 | None:intergenic | 40.0% | |
| CAAATTGTACCTCCAAGAGT+TGG | - | tig0022300:46698-46717 | Msa1398880:intron | 40.0% | |
| AGTTGTCCATTTCCAACTCT+TGG | + | tig0022300:46713-46732 | None:intergenic | 40.0% | |
| GGAAATGGACAACTACTGAA+AGG | - | tig0022300:46719-46738 | Msa1398880:intron | 40.0% | |
| AGAGAAGAACCGGTCAATTT+CGG | - | tig0022300:46813-46832 | Msa1398880:CDS | 40.0% | |
| TTCAATTGGAGCAAGCATTC+GGG | - | tig0022300:46862-46881 | Msa1398880:CDS | 40.0% | |
| ! | AGGTAGAAGCGAACCTTTTA+AGG | - | tig0022300:46886-46905 | Msa1398880:CDS | 40.0% |
| CGAACATTCAGGACCTTAAA+AGG | + | tig0022300:46902-46921 | None:intergenic | 40.0% | |
| ! | TTTAAGGTCCTGAATGTTCG+AGG | - | tig0022300:46902-46921 | Msa1398880:CDS | 40.0% |
| TGATAAAGTATGGCGTCTGA+AGG | - | tig0022300:47061-47080 | Msa1398880:CDS | 40.0% | |
| GATAAAGTATGGCGTCTGAA+GGG | - | tig0022300:47062-47081 | Msa1398880:CDS | 40.0% | |
| ATAAAGTATGGCGTCTGAAG+GGG | - | tig0022300:47063-47082 | Msa1398880:CDS | 40.0% | |
| GTAAAGATGGTACACTTCAC+AGG | - | tig0022300:47090-47109 | Msa1398880:CDS | 40.0% | |
| GTACAAACTGCACAATATGG+TGG | - | tig0022300:47792-47811 | Msa1398880:CDS | 40.0% | |
| TGGAAAGTCAAACTGTTGCA+GGG | + | tig0022300:47829-47848 | None:intergenic | 40.0% | |
| TTGGAAAGTCAAACTGTTGC+AGG | + | tig0022300:47830-47849 | None:intergenic | 40.0% | |
| CAGGCCTGAATGATAGAATT+AGG | + | tig0022300:48009-48028 | None:intergenic | 40.0% | |
| !! | ATTTCTGGTTGGCATGGAAA+TGG | + | tig0022300:48062-48081 | None:intergenic | 40.0% |
| ! | ATCTCACAAAGTGGACTTGT+AGG | - | tig0022300:48098-48117 | Msa1398880:intron | 40.0% |
| TGTGATCAAATGGCAGCATT+AGG | - | tig0022300:48131-48150 | Msa1398880:intron | 40.0% | |
| ACCTCTTCTCCAGAAAAGTA+TGG | + | tig0022300:48170-48189 | None:intergenic | 40.0% | |
| !! | GTATCACTGGTTGGTCTATT+TGG | - | tig0022300:48188-48207 | Msa1398880:intron | 40.0% |
| TGCTCCGTCATCATAAACAA+AGG | + | tig0022300:48246-48265 | None:intergenic | 40.0% | |
| !! | TTTGTTTATGATGACGGAGC+AGG | - | tig0022300:48245-48264 | Msa1398880:intron | 40.0% |
| TGGATTGACCCTTAACGAGT+TGG | - | tig0022300:46436-46455 | Msa1398880:CDS | 45.0% | |
| ! | TGTGTTGGCCAACTCGTTAA+GGG | + | tig0022300:46447-46466 | None:intergenic | 45.0% |
| ! | ATGTGTTGGCCAACTCGTTA+AGG | + | tig0022300:46448-46467 | None:intergenic | 45.0% |
| AGTTGGCCAACACATATGAG+AGG | - | tig0022300:46453-46472 | Msa1398880:CDS | 45.0% | |
| TCTCCTCCTCTCATATGTGT+TGG | + | tig0022300:46462-46481 | None:intergenic | 45.0% | |
| AAATCAGCAACGCGTAGTCA+TGG | - | tig0022300:46589-46608 | Msa1398880:intron | 45.0% | |
| AAAAGAGGATTGGACAGCTG+AGG | - | tig0022300:46664-46683 | Msa1398880:intron | 45.0% | |
| GTACCTCCAAGAGTTGGAAA+TGG | - | tig0022300:46704-46723 | Msa1398880:intron | 45.0% | |
| TGTCCATTTCCAACTCTTGG+AGG | + | tig0022300:46710-46729 | None:intergenic | 45.0% | |
| GTCCTGAATGTTCGAGGAAA+GGG | - | tig0022300:46908-46927 | Msa1398880:CDS | 45.0% | |
| TACCCTTTCCTCGAACATTC+AGG | + | tig0022300:46913-46932 | None:intergenic | 45.0% | |
| CTGAAGGGGATACGTAAAGA+TGG | - | tig0022300:47077-47096 | Msa1398880:CDS | 45.0% | |
| ACAAGACTGGAGGGAAGTTA+TGG | - | tig0022300:47322-47341 | Msa1398880:CDS | 45.0% | |
| GACTTTCCAATTGCTCAGCA+AGG | - | tig0022300:47840-47859 | Msa1398880:intron | 45.0% | |
| ! | AGAGTACCTTGCTGAGCAAT+TGG | + | tig0022300:47849-47868 | None:intergenic | 45.0% |
| TAGGCGATGAGTCTTGAAGA+GGG | - | tig0022300:47933-47952 | Msa1398880:intron | 45.0% | |
| TTCCATGCCAACCAGAAATG+TGG | - | tig0022300:48063-48082 | Msa1398880:intron | 45.0% | |
| ! | ATGTCGTCGCCATACTTTTC+TGG | - | tig0022300:48158-48177 | Msa1398880:CDS | 45.0% |
| !! | GCCATACTTTTCTGGAGAAG+AGG | - | tig0022300:48166-48185 | Msa1398880:CDS | 45.0% |
| !! | TTCTGGAGAAGAGGTATCAC+TGG | - | tig0022300:48175-48194 | Msa1398880:CDS | 45.0% |
| GGGGGAAGAATAATGATTGC+TGG | + | tig0022300:48273-48292 | None:intergenic | 45.0% | |
| ATACCCAGTTAGCTAGCAGT+TGG | - | tig0022300:48647-48666 | Msa1398880:five_prime_UTR | 45.0% | |
| CATCCAACTGCTAGCTAACT+GGG | + | tig0022300:48653-48672 | None:intergenic | 45.0% | |
| !! | AAAAAAAAAAAAAAATTGAA+TGG | - | tig0022300:45588-45607 | Msa1398880:three_prime_UTR | 5.0% |
| !! | ATCGAAGAGGGCATCTCATG+TGG | - | tig0022300:45612-45631 | Msa1398880:three_prime_UTR | 50.0% |
| !! | TCGAAGAGGGCATCTCATGT+GGG | - | tig0022300:45613-45632 | Msa1398880:three_prime_UTR | 50.0% |
| ! | AGGTAGTGGTGGAGCTTATG+TGG | + | tig0022300:46065-46084 | None:intergenic | 50.0% |
| TCCACCACTACCTAACCTCA+AGG | - | tig0022300:46072-46091 | Msa1398880:CDS | 50.0% | |
| ! | ACCTTGAGGTTAGGTAGTGG+TGG | + | tig0022300:46076-46095 | None:intergenic | 50.0% |
| TGGCCAACACATATGAGAGG+AGG | - | tig0022300:46456-46475 | Msa1398880:CDS | 50.0% | |
| CAACGCGTAGTCATGGAAGA+AGG | - | tig0022300:46596-46615 | Msa1398880:intron | 50.0% | |
| AGAACCGGTCAATTTCGGCT+AGG | - | tig0022300:46818-46837 | Msa1398880:CDS | 50.0% | |
| GAACCGGTCAATTTCGGCTA+GGG | - | tig0022300:46819-46838 | Msa1398880:CDS | 50.0% | |
| AACCGGTCAATTTCGGCTAG+GGG | - | tig0022300:46820-46839 | Msa1398880:CDS | 50.0% | |
| AACCCCTAGCCGAAATTGAC+CGG | + | tig0022300:46825-46844 | None:intergenic | 50.0% | |
| ATTGGAGCAAGCATTCGGGA+AGG | - | tig0022300:46866-46885 | Msa1398880:CDS | 50.0% | |
| GGTCCTGAATGTTCGAGGAA+AGG | - | tig0022300:46907-46926 | Msa1398880:CDS | 50.0% | |
| CACAGGCAGTTGACATCAGA+TGG | - | tig0022300:47107-47126 | Msa1398880:CDS | 50.0% | |
| CTTCTGTCATTGGCAGTGCT+TGG | - | tig0022300:47671-47690 | Msa1398880:CDS | 50.0% | |
| CTAGGCGATGAGTCTTGAAG+AGG | - | tig0022300:47932-47951 | Msa1398880:intron | 50.0% | |
| CTGGTTGGCATGGAAATGGT+AGG | + | tig0022300:48058-48077 | None:intergenic | 50.0% | |
| !! | TAGACGGCCACATTTCTGGT+TGG | + | tig0022300:48073-48092 | None:intergenic | 50.0% |
| GAGATAGACGGCCACATTTC+TGG | + | tig0022300:48077-48096 | None:intergenic | 50.0% | |
| !! | GGAGAAGAGGTATCACTGGT+TGG | - | tig0022300:48179-48198 | Msa1398880:CDS | 50.0% |
| CCATCCAACTGCTAGCTAAC+TGG | + | tig0022300:48654-48673 | None:intergenic | 50.0% | |
| CCAGTTAGCTAGCAGTTGGA+TGG | - | tig0022300:48651-48670 | Msa1398880:five_prime_UTR | 50.0% | |
| CTGTCATTGGCAGTGCTTGG+TGG | - | tig0022300:47674-47693 | Msa1398880:CDS | 55.0% | |
| !! | GGCCACATTTCTGGTTGGCA+TGG | + | tig0022300:48068-48087 | None:intergenic | 55.0% |
| TAGCTAGCAGTTGGATGGCC+TGG | - | tig0022300:48656-48675 | Msa1398880:five_prime_UTR | 55.0% | |
| AGCTAGCAGTTGGATGGCCT+GGG | - | tig0022300:48657-48676 | Msa1398880:five_prime_UTR | 55.0% | |
| GCAAATGACAAAGCAGCCCC+AGG | + | tig0022300:48677-48696 | None:intergenic | 55.0% | |
| GCTAGCAGTTGGATGGCCTG+GGG | - | tig0022300:48658-48677 | Msa1398880:five_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022300 | gene | 45482 | 48764 | 45482 | ID=Msa1398880;Name=Msa1398880 |
| tig0022300 | mRNA | 45482 | 48764 | 45482 | ID=Msa1398880-mRNA-1;Parent=Msa1398880;Name=Msa1398880-mRNA-1;_AED=0.28;_eAED=0.28;_QI=125|1|1|1|0.87|0.77|9|323|562 |
| tig0022300 | exon | 45482 | 45557 | 45482 | ID=Msa1398880-mRNA-1:exon:16880;Parent=Msa1398880-mRNA-1 |
| tig0022300 | exon | 45578 | 46222 | 45578 | ID=Msa1398880-mRNA-1:exon:16879;Parent=Msa1398880-mRNA-1 |
| tig0022300 | exon | 46385 | 46559 | 46385 | ID=Msa1398880-mRNA-1:exon:16878;Parent=Msa1398880-mRNA-1 |
| tig0022300 | exon | 46722 | 46931 | 46722 | ID=Msa1398880-mRNA-1:exon:16877;Parent=Msa1398880-mRNA-1 |
| tig0022300 | exon | 47056 | 47216 | 47056 | ID=Msa1398880-mRNA-1:exon:16876;Parent=Msa1398880-mRNA-1 |
| tig0022300 | exon | 47317 | 47813 | 47317 | ID=Msa1398880-mRNA-1:exon:16875;Parent=Msa1398880-mRNA-1 |
| tig0022300 | exon | 48153 | 48199 | 48153 | ID=Msa1398880-mRNA-1:exon:16874;Parent=Msa1398880-mRNA-1 |
| tig0022300 | exon | 48321 | 48381 | 48321 | ID=Msa1398880-mRNA-1:exon:16873;Parent=Msa1398880-mRNA-1 |
| tig0022300 | exon | 48500 | 48764 | 48500 | ID=Msa1398880-mRNA-1:exon:16872;Parent=Msa1398880-mRNA-1 |
| tig0022300 | five_prime_UTR | 48640 | 48764 | 48640 | ID=Msa1398880-mRNA-1:five_prime_utr;Parent=Msa1398880-mRNA-1 |
| tig0022300 | CDS | 48500 | 48639 | 48500 | ID=Msa1398880-mRNA-1:cds;Parent=Msa1398880-mRNA-1 |
| tig0022300 | CDS | 48321 | 48381 | 48321 | ID=Msa1398880-mRNA-1:cds;Parent=Msa1398880-mRNA-1 |
| tig0022300 | CDS | 48153 | 48199 | 48153 | ID=Msa1398880-mRNA-1:cds;Parent=Msa1398880-mRNA-1 |
| tig0022300 | CDS | 47317 | 47813 | 47317 | ID=Msa1398880-mRNA-1:cds;Parent=Msa1398880-mRNA-1 |
| tig0022300 | CDS | 47056 | 47216 | 47056 | ID=Msa1398880-mRNA-1:cds;Parent=Msa1398880-mRNA-1 |
| tig0022300 | CDS | 46722 | 46931 | 46722 | ID=Msa1398880-mRNA-1:cds;Parent=Msa1398880-mRNA-1 |
| tig0022300 | CDS | 46385 | 46559 | 46385 | ID=Msa1398880-mRNA-1:cds;Parent=Msa1398880-mRNA-1 |
| tig0022300 | CDS | 45825 | 46222 | 45825 | ID=Msa1398880-mRNA-1:cds;Parent=Msa1398880-mRNA-1 |
| tig0022300 | three_prime_UTR | 45578 | 45824 | 45578 | ID=Msa1398880-mRNA-1:three_prime_utr;Parent=Msa1398880-mRNA-1 |
| tig0022300 | three_prime_UTR | 45482 | 45557 | 45482 | ID=Msa1398880-mRNA-1:three_prime_utr;Parent=Msa1398880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
