AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0336250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0336250 MtrunA17_Chr2g0322111 86.380 279 2 2 1 272 1 250 1.04e-159 443
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0336250 AT5G22080.1 70.609 279 42 3 1 272 1 246 6.87e-121 345
Msa0336250 AT5G22080.2 65.591 279 38 3 1 272 1 228 1.81e-106 308
Msa0336250 AT1G65280.2 36.364 99 48 2 1 92 272 362 8.34e-11 62.4
Msa0336250 AT1G65280.1 36.364 99 48 2 1 92 272 362 8.34e-11 62.4

Find 68 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGATAATCTCTTTCATT+TGG 0.308784 2_4:-55622252 None:intergenic
GTTATGGCTGTAGAACAAAA+AGG 0.310225 2_4:+55625470 Msa0336250:intron
AATCATGGATATAGGTTTCC+TGG 0.318939 2_4:-55626016 None:intergenic
GGATCTTCTGTCTTGAGCTT+AGG 0.323629 2_4:-55625507 None:intergenic
GATCTTCTGTCTTGAGCTTA+GGG 0.328340 2_4:-55625506 None:intergenic
AGGAGGAACAGAAAGAAATA+TGG 0.344165 2_4:+55623708 Msa0336250:CDS
CCTATGTATCAATCAGTACT+AGG 0.345510 2_4:-55625729 None:intergenic
AATGTCAATCAGTATTCATT+TGG 0.350105 2_4:-55625702 None:intergenic
TCTGATGCCATACCAAAATC+TGG 0.355816 2_4:-55623525 None:intergenic
CCACAGGCAAAGGAGGCTTT+TGG 0.370643 2_4:+55621202 Msa0336250:CDS
CTCTGAACGTAGGATTTGTT+AGG 0.406859 2_4:-55625528 None:intergenic
TTGTAATGATATTTATCTCT+AGG 0.408933 2_4:+55625646 Msa0336250:three_prime_UTR
AGCCAAGTTAATTCAGCAAA+AGG 0.416672 2_4:+55622276 Msa0336250:CDS
TGTGGATGTTTACATTTGTC+AGG 0.423617 2_4:-55621184 None:intergenic
ACTTTGAGTTTCTGAGAATA+CGG 0.435583 2_4:-55620122 None:intergenic
GGGAAGGAACAAGAGAAAAG+AGG 0.454577 2_4:+55623759 Msa0336250:CDS
CCTAAAATCTGGCTCTCTGC+AGG 0.462255 2_4:-55625930 None:intergenic
GATAGGTTTAAATGCTCAAA+CGG 0.468300 2_4:-55620504 None:intergenic
AGTTGTATTGCCTTTACAAA+GGG 0.472897 2_4:+55625764 Msa0336250:three_prime_UTR
GTCAATCAGTATTCATTTGG+AGG 0.478356 2_4:-55625699 None:intergenic
TCAGTGTCTAACCTAAAATC+TGG 0.483622 2_4:-55625941 None:intergenic
GCTCTCTGCAGGCAGATGAC+TGG 0.493350 2_4:-55625919 None:intergenic
TGTAATGATATTTATCTCTA+GGG 0.494204 2_4:+55625647 Msa0336250:three_prime_UTR
CCTAGTACTGATTGATACAT+AGG 0.494728 2_4:+55625729 Msa0336250:three_prime_UTR
GCGTGAACATGAAGAGGAAT+GGG 0.499626 2_4:+55623739 Msa0336250:CDS
TATACATACCTCGTCAACTA+AGG 0.508433 2_4:-55622883 None:intergenic
GGAAGGAACAAGAGAAAAGA+GGG 0.509568 2_4:+55623760 Msa0336250:CDS
AGGCTAGGGTGTTTGGTCAC+AGG 0.509832 2_4:+55625563 Msa0336250:exon
GAGAAAGAAACATCTGAAGA+AGG 0.511918 2_4:+55622839 Msa0336250:CDS
CTTCATAAAATCTCTCCAGC+TGG 0.512693 2_4:-55625333 None:intergenic
AGCGTGAACATGAAGAGGAA+TGG 0.512830 2_4:+55623738 Msa0336250:CDS
TCACAGGCGATCTATCCAAC+AGG 0.517687 2_4:+55625579 Msa0336250:three_prime_UTR
CACTTCATCAGGTATCCAGC+TGG 0.522430 2_4:+55625318 Msa0336250:intron
AAAGAGACAATGAAGTCCTC+AGG 0.532848 2_4:+55620269 Msa0336250:CDS
TCATCTTCGATGATGGTGGA+TGG 0.533141 2_4:-55620205 None:intergenic
ATCATGGATATAGGTTTCCT+GGG 0.533245 2_4:-55626015 None:intergenic
CTGATGCCATACCAAAATCT+GGG 0.535759 2_4:-55623524 None:intergenic
CAATATCAAACTGACACAAA+GGG 0.542607 2_4:-55625626 None:intergenic
AAGTAAATCATCTTCGATGA+TGG 0.548035 2_4:-55620212 None:intergenic
CATCTTCGATGATGGTGGAT+GGG 0.561494 2_4:-55620204 None:intergenic
CTGTAATGACTGTCGTTCAA+AGG 0.564182 2_4:+55620082 Msa0336250:five_prime_UTR
AAGAAAGCGTGAACATGAAG+AGG 0.566688 2_4:+55623733 Msa0336250:CDS
GGTCATGAGAGGCATCTCAA+TGG 0.572605 2_4:+55625668 Msa0336250:three_prime_UTR
GACACAAAGGGCGCATGGCT+AGG 0.574286 2_4:-55625614 None:intergenic
CTATGTATCAATCAGTACTA+GGG 0.578778 2_4:-55625728 None:intergenic
ATCTTCTGTCTTGAGCTTAG+GGG 0.581558 2_4:-55625505 None:intergenic
ACAATATCAAACTGACACAA+AGG 0.582509 2_4:-55625627 None:intergenic
CTAACAAATCCTACGTTCAG+AGG 0.583252 2_4:+55625529 Msa0336250:CDS
TCTTCTGTCTTGAGCTTAGG+GGG 0.583605 2_4:-55625504 None:intergenic
CCAAAAGCCTCCTTTGCCTG+TGG 0.584611 2_4:-55621202 None:intergenic
TGATAAGCAATATGAACAGT+CGG 0.586242 2_4:+55623145 Msa0336250:CDS
CCGCTTAGTGTTAAATACCC+AGG 0.586647 2_4:+55625998 Msa0336250:three_prime_UTR
AAGTTGTATTGCCTTTACAA+AGG 0.589384 2_4:+55625763 Msa0336250:three_prime_UTR
TAAATCATCTTCGATGATGG+TGG 0.589520 2_4:-55620209 None:intergenic
TGACAAATGTAAACATCCAC+AGG 0.592344 2_4:+55621186 Msa0336250:CDS
TAAACATCCACAGGCAAAGG+AGG 0.595747 2_4:+55621195 Msa0336250:CDS
CCTGGGTATTTAACACTAAG+CGG 0.603513 2_4:-55625998 None:intergenic
CAATAGATGAATCAAACGAT+AGG 0.611296 2_4:-55620521 None:intergenic
AAACTGACACAAAGGGCGCA+TGG 0.611823 2_4:-55625619 None:intergenic
ATGTAAACATCCACAGGCAA+AGG 0.614761 2_4:+55621192 Msa0336250:CDS
AGTACTGATTGATACATAGG+AGG 0.632795 2_4:+55625732 Msa0336250:three_prime_UTR
ATGTAGATATCCGAGGAGGA+AGG 0.639180 2_4:+55623668 Msa0336250:intron
AATGAAGTCCTTAGTTGACG+AGG 0.658853 2_4:+55622875 Msa0336250:CDS
ACAGTCGGAAGAATTCAAGC+AGG 0.661666 2_4:+55623160 Msa0336250:CDS
AAATATTATGTAGATATCCG+AGG 0.665580 2_4:+55623661 Msa0336250:intron
GAACATGAAGAGGAATGGGA+AGG 0.666125 2_4:+55623743 Msa0336250:CDS
TTTATCTCTAGGGTCATGAG+AGG 0.669693 2_4:+55625657 Msa0336250:three_prime_UTR
TATTATGTAGATATCCGAGG+AGG 0.732877 2_4:+55623664 Msa0336250:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATATTATTATTTAGAC+AGG + chr2_4:55621608-55621627 Msa0336250:intron 10.0%
!! ATAATATTTAATAAGCTAAA+AGG - chr2_4:55623650-55623669 None:intergenic 10.0%
!!! TTATAAGTGAATATTAATTT+TGG + chr2_4:55623853-55623872 Msa0336250:intron 10.0%
!! CAAAAAAAAAAAAAAAAACT+AGG - chr2_4:55624525-55624544 None:intergenic 10.0%
!!! GTTTTTTTTTTTTTTTTTGA+AGG + chr2_4:55624526-55624545 Msa0336250:intron 10.0%
!!! ATTTAGAACATATTTTTATA+GGG - chr2_4:55625211-55625230 None:intergenic 10.0%
!!! AATTTAGAACATATTTTTAT+AGG - chr2_4:55625212-55625231 None:intergenic 10.0%
!!! TTTTGGAAATTTTTTATGTT+TGG + chr2_4:55620343-55620362 Msa0336250:intron 15.0%
!!! TAACCTAATTTCTTTATTTT+CGG - chr2_4:55620391-55620410 None:intergenic 15.0%
!! AAATAAAGAAATTAGGTTAT+TGG + chr2_4:55620392-55620411 Msa0336250:intron 15.0%
!! AATAAAGAAATTAGGTTATT+GGG + chr2_4:55620393-55620412 Msa0336250:intron 15.0%
!! AAATTTAAGAGAAACTAATA+AGG + chr2_4:55620955-55620974 Msa0336250:intron 15.0%
!! TTTATTTATGTTATTCAAAG+TGG + chr2_4:55621337-55621356 Msa0336250:intron 15.0%
!! ATTTAATTACAATGTTCTTT+AGG + chr2_4:55621414-55621433 Msa0336250:intron 15.0%
!! TTTAATTACAATGTTCTTTA+GGG + chr2_4:55621415-55621434 Msa0336250:intron 15.0%
!!! TTTTTTAACATATTGAAGAA+TGG + chr2_4:55622091-55622110 Msa0336250:intron 15.0%
!!! CATTAAAAATTCTTTTATTG+TGG + chr2_4:55623456-55623475 Msa0336250:intron 15.0%
!!! ATACCTTTTAAAATTTTAGA+CGG + chr2_4:55624290-55624309 Msa0336250:intron 15.0%
!!! ACATTTATAGGAATAATTTT+GGG + chr2_4:55624586-55624605 Msa0336250:intron 15.0%
!!! ACTCATTTTATGAAATTTAT+TGG - chr2_4:55625027-55625046 None:intergenic 15.0%
!!! GTTTCTCTTAAATTTTTTCT+AGG - chr2_4:55620950-55620969 None:intergenic 20.0%
!! TGCTTTATAATTATTCAAAG+TGG + chr2_4:55621243-55621262 Msa0336250:intron 20.0%
!! TACTGTAGGATAATATATAT+TGG + chr2_4:55621479-55621498 Msa0336250:intron 20.0%
!! ATTATTTAGACAGGAAAATT+TGG + chr2_4:55621617-55621636 Msa0336250:intron 20.0%
!! AAATTTATAGAATCTACCTT+AGG + chr2_4:55621894-55621913 Msa0336250:intron 20.0%
!!! TTTTTTTTACCATTAGATTG+AGG - chr2_4:55622444-55622463 None:intergenic 20.0%
!!! TACTTCTTTTTAATAAGCAA+GGG - chr2_4:55623100-55623119 None:intergenic 20.0%
!!! AAGTACTTTATTTCTTTATC+AGG + chr2_4:55623115-55623134 Msa0336250:intron 20.0%
!!! AGTACTTTATTTCTTTATCA+GGG + chr2_4:55623116-55623135 Msa0336250:intron 20.0%
!! AACTATTAACAGAAAAAGAA+TGG + chr2_4:55623204-55623223 Msa0336250:CDS 20.0%
!!! TTATTTAGAACGTTTGTTTT+CGG + chr2_4:55623487-55623506 Msa0336250:intron 20.0%
!! TCTGTTTATCTATGTAAATT+TGG + chr2_4:55623583-55623602 Msa0336250:intron 20.0%
!! TATGCAATGAAGTTTAAATA+TGG - chr2_4:55623799-55623818 None:intergenic 20.0%
!! CAGAAAAATATTTGAATTGA+AGG + chr2_4:55624034-55624053 Msa0336250:intron 20.0%
!!! ATGATTTTCTTATGAATCAT+AGG + chr2_4:55624134-55624153 Msa0336250:intron 20.0%
!! TTCAATTAACCTACAAAAAT+GGG - chr2_4:55624211-55624230 None:intergenic 20.0%
!! ATTCAATTAACCTACAAAAA+TGG - chr2_4:55624212-55624231 None:intergenic 20.0%
!! ATTATTCCTATAAATGTGTT+TGG - chr2_4:55624583-55624602 None:intergenic 20.0%
!!! CACATTTATAGGAATAATTT+TGG + chr2_4:55624585-55624604 Msa0336250:intron 20.0%
!!! TGTATATTTTGTTTGTTACA+TGG + chr2_4:55624612-55624631 Msa0336250:intron 20.0%
!! ATTTCAGTACTAAATAAAGT+TGG - chr2_4:55624863-55624882 None:intergenic 20.0%
!!! GTTTTTATGTAATCATCAAT+AGG + chr2_4:55624966-55624985 Msa0336250:intron 20.0%
!!! AATTCATCCATATATTTTGA+CGG - chr2_4:55625279-55625298 None:intergenic 20.0%
!!! CTAACATTACATTTTTGTTA+TGG + chr2_4:55625454-55625473 Msa0336250:intron 20.0%
!! TTGTAATGATATTTATCTCT+AGG + chr2_4:55625646-55625665 Msa0336250:three_prime_UTR 20.0%
!! TGTAATGATATTTATCTCTA+GGG + chr2_4:55625647-55625666 Msa0336250:three_prime_UTR 20.0%
!!! ATTTTTTAGGGTTTTCTTTC+AGG - chr2_4:55620172-55620191 None:intergenic 25.0%
! TGAAAGAAAACCCTAAAAAA+TGG + chr2_4:55620171-55620190 Msa0336250:exon 25.0%
! GAAAGAAAACCCTAAAAAAT+GGG + chr2_4:55620172-55620191 Msa0336250:exon 25.0%
!!! TTTGATTCTCCCATTTTTTA+GGG - chr2_4:55620184-55620203 None:intergenic 25.0%
!!! GTTTTTGGAGTATTTGATTT+TGG + chr2_4:55620326-55620345 Msa0336250:intron 25.0%
! TTTAAGAGAAACTAATAAGG+AGG + chr2_4:55620958-55620977 Msa0336250:intron 25.0%
! GTTTATGTTAAATGTTCTGT+TGG + chr2_4:55621107-55621126 Msa0336250:intron 25.0%
! CCTCTTATAAAATTCTCTTT+GGG + chr2_4:55621130-55621149 Msa0336250:intron 25.0%
!! TCTTTTGTAGATATCATTGA+TGG + chr2_4:55621156-55621175 Msa0336250:intron 25.0%
! GAAACAAGAAATAAACAATG+AGG - chr2_4:55621293-55621312 None:intergenic 25.0%
!! TTGTTTATTTCTTGTTTCCT+TGG + chr2_4:55621295-55621314 Msa0336250:intron 25.0%
! ATGTAACTAAATATAGTCCA+AGG - chr2_4:55621315-55621334 None:intergenic 25.0%
! TTTAGTGTAAAACTATGAGA+TGG - chr2_4:55621759-55621778 None:intergenic 25.0%
! ATTGAGACAATATGTAATAC+TGG - chr2_4:55621790-55621809 None:intergenic 25.0%
! ATTCTATAAATTTCCTTCTG+AGG - chr2_4:55621887-55621906 None:intergenic 25.0%
!!! AATGGAATAAAAAGTACCTA+AGG - chr2_4:55621913-55621932 None:intergenic 25.0%
!!! ATTCCATTCAAGTGTTATTT+TGG + chr2_4:55621925-55621944 Msa0336250:intron 25.0%
! TCATGCTAAGAGTTAAAAAT+GGG - chr2_4:55622007-55622026 None:intergenic 25.0%
! ATCATGCTAAGAGTTAAAAA+TGG - chr2_4:55622008-55622027 None:intergenic 25.0%
! AGAAGATAATCTCTTTCATT+TGG - chr2_4:55622255-55622274 None:intergenic 25.0%
!!! AGTGCAAATTATTTCTACTA+AGG + chr2_4:55622348-55622367 Msa0336250:intron 25.0%
!!! GTGCAAATTATTTCTACTAA+GGG + chr2_4:55622349-55622368 Msa0336250:intron 25.0%
!! TACTATTTTCCTCAATCTAA+TGG + chr2_4:55622432-55622451 Msa0336250:intron 25.0%
! TTAATGATCTTCTAGCATTT+GGG - chr2_4:55622483-55622502 None:intergenic 25.0%
!!! AAACCCAAAACCTTTTAATT+CGG + chr2_4:55622644-55622663 Msa0336250:intron 25.0%
! TGGAGATAAAAAACAAAACA+GGG - chr2_4:55622721-55622740 None:intergenic 25.0%
! ATGGAGATAAAAAACAAAAC+AGG - chr2_4:55622722-55622741 None:intergenic 25.0%
!!! AGGTATGTATAGTTTTGTTA+GGG + chr2_4:55622895-55622914 Msa0336250:intron 25.0%
!! GTGTGAGTATATTTCATTTT+TGG + chr2_4:55622963-55622982 Msa0336250:intron 25.0%
! AAGCTTACATAATCAAATTC+TGG - chr2_4:55623049-55623068 None:intergenic 25.0%
!! GTACTTCTTTTTAATAAGCA+AGG - chr2_4:55623101-55623120 None:intergenic 25.0%
! TATTAACAGAAAAAGAATGG+AGG + chr2_4:55623207-55623226 Msa0336250:CDS 25.0%
!!! ACATGATGATCATTTTTACT+AGG + chr2_4:55623372-55623391 Msa0336250:intron 25.0%
!!! AGTGATTAGTGCTTTTTAAA+AGG + chr2_4:55623410-55623429 Msa0336250:intron 25.0%
!!! TATTTAGAACGTTTGTTTTC+GGG + chr2_4:55623488-55623507 Msa0336250:intron 25.0%
! AAATATTATGTAGATATCCG+AGG + chr2_4:55623661-55623680 Msa0336250:intron 25.0%
! AGCTTAGTTATAGATTTCAT+AGG - chr2_4:55623886-55623905 None:intergenic 25.0%
! GTTATTAAGGTTATTATCCA+AGG - chr2_4:55624189-55624208 None:intergenic 25.0%
!!! CTTTTAAAATTTTAGACGGT+GGG + chr2_4:55624294-55624313 Msa0336250:intron 25.0%
!!! TTTTAGAAAACTGATCATGT+AGG - chr2_4:55624353-55624372 None:intergenic 25.0%
! CATAGTGGTAAAAATTAACA+TGG + chr2_4:55624414-55624433 Msa0336250:intron 25.0%
!!! ATAAAGAGATTCCTTTTTTC+AGG - chr2_4:55624464-55624483 None:intergenic 25.0%
! TTTCTTACAACAAATACACT+AGG - chr2_4:55624559-55624578 None:intergenic 25.0%
! AGAAATCCAAACACATTTAT+AGG + chr2_4:55624574-55624593 Msa0336250:intron 25.0%
!! AAGTTATCTAAAGTCATTCT+TGG - chr2_4:55624797-55624816 None:intergenic 25.0%
! CATTCCATTATTAGAAGAAT+TGG + chr2_4:55624885-55624904 Msa0336250:intron 25.0%
! CAGTCTAAAAGTAATCAAAA+TGG + chr2_4:55625152-55625171 Msa0336250:intron 25.0%
! AATGTCAATCAGTATTCATT+TGG - chr2_4:55625705-55625724 None:intergenic 25.0%
! TCTAAAAAAACCCTTTGTAA+AGG - chr2_4:55625777-55625796 None:intergenic 25.0%
!!! CGTTTTAAAATCATGGATAT+AGG - chr2_4:55626027-55626046 None:intergenic 25.0%
! ACTTTGAGTTTCTGAGAATA+CGG - chr2_4:55620125-55620144 None:intergenic 30.0%
!!! GTTTGATTCTCCCATTTTTT+AGG - chr2_4:55620185-55620204 None:intergenic 30.0%
AAGTAAATCATCTTCGATGA+TGG - chr2_4:55620215-55620234 None:intergenic 30.0%
!! TTGTTTTTCGCTTTCTGATT+AGG + chr2_4:55620297-55620316 Msa0336250:intron 30.0%
! TGTTTTTCGCTTTCTGATTA+GGG + chr2_4:55620298-55620317 Msa0336250:intron 30.0%
!!! CTGATTAGGGATTTTGTTTT+TGG + chr2_4:55620311-55620330 Msa0336250:intron 30.0%
ACGCCGAAAATAAAGAAATT+AGG + chr2_4:55620385-55620404 Msa0336250:intron 30.0%
!!! TTTTTTTGTTGACAGGATTC+TGG + chr2_4:55620464-55620483 Msa0336250:intron 30.0%
!!! TTTTTTGTTGACAGGATTCT+GGG + chr2_4:55620465-55620484 Msa0336250:intron 30.0%
GATAGGTTTAAATGCTCAAA+CGG - chr2_4:55620507-55620526 None:intergenic 30.0%
CAATAGATGAATCAAACGAT+AGG - chr2_4:55620524-55620543 None:intergenic 30.0%
TTGACAGTATTAGAGAAAGT+TGG + chr2_4:55620786-55620805 Msa0336250:intron 30.0%
TGACAGTATTAGAGAAAGTT+GGG + chr2_4:55620787-55620806 Msa0336250:intron 30.0%
TAGAAAAGATGGTAGAAACA+AGG + chr2_4:55620823-55620842 Msa0336250:intron 30.0%
GGAGTTACGTATTAATAAGT+TGG + chr2_4:55620979-55620998 Msa0336250:intron 30.0%
! GTATTAATAAGTTGGATGAC+AGG + chr2_4:55620987-55621006 Msa0336250:intron 30.0%
GCCTCTTATAAAATTCTCTT+TGG + chr2_4:55621129-55621148 Msa0336250:intron 30.0%
! CCCAAAGAGAATTTTATAAG+AGG - chr2_4:55621133-55621152 None:intergenic 30.0%
CTGTTATTAAACTATCTGTG+AGG - chr2_4:55621734-55621753 None:intergenic 30.0%
CTTCATACTGTCATCTTTAT+TGG + chr2_4:55621815-55621834 Msa0336250:intron 30.0%
TAACCAACATATCAGTGTAT+TGG - chr2_4:55621853-55621872 None:intergenic 30.0%
CAACCAAAATAACACTTGAA+TGG - chr2_4:55621931-55621950 None:intergenic 30.0%
TGATAATTTCTGCAACATGA+TGG + chr2_4:55622139-55622158 Msa0336250:intron 30.0%
! AACCTTTTGCTGAATTAACT+TGG - chr2_4:55622281-55622300 None:intergenic 30.0%
ATTGAGGAAAATAGTAAACC+AGG - chr2_4:55622428-55622447 None:intergenic 30.0%
GCATTTGGGAAAAAATAATG+AGG - chr2_4:55622469-55622488 None:intergenic 30.0%
GTTAATGATCTTCTAGCATT+TGG - chr2_4:55622484-55622503 None:intergenic 30.0%
!! AACCCAAAACCTTTTAATTC+GGG + chr2_4:55622645-55622664 Msa0336250:intron 30.0%
AAAGATAGACCCGAATTAAA+AGG - chr2_4:55622657-55622676 None:intergenic 30.0%
ATAAAAAACAAAACAGGGGT+GGG - chr2_4:55622716-55622735 None:intergenic 30.0%
GGAGATAAAAAACAAAACAG+GGG - chr2_4:55622720-55622739 None:intergenic 30.0%
CAGACATTTCTTCTATACAA+TGG - chr2_4:55622741-55622760 None:intergenic 30.0%
!! AACTAAGGACTTCATTTTTG+AGG - chr2_4:55622871-55622890 None:intergenic 30.0%
!!! GAGGTATGTATAGTTTTGTT+AGG + chr2_4:55622894-55622913 Msa0336250:intron 30.0%
TGATAAGCAATATGAACAGT+CGG + chr2_4:55623145-55623164 Msa0336250:CDS 30.0%
GAGAAGAAAAATGCAAATGA+GGG + chr2_4:55623229-55623248 Msa0336250:CDS 30.0%
!! CTTTTTAAAAGGTCTAGCTT+TGG + chr2_4:55623421-55623440 Msa0336250:intron 30.0%
CACAGAACACAAATATCATT+TGG - chr2_4:55623930-55623949 None:intergenic 30.0%
TGAATCATAGGTACTAATCA+TGG + chr2_4:55624146-55624165 Msa0336250:intron 30.0%
GAATCATAGGTACTAATCAT+GGG + chr2_4:55624147-55624166 Msa0336250:intron 30.0%
AATCATAGGTACTAATCATG+GGG + chr2_4:55624148-55624167 Msa0336250:intron 30.0%
! TAATCATGGGGGTAATATTT+TGG + chr2_4:55624160-55624179 Msa0336250:intron 30.0%
! AATCATGGGGGTAATATTTT+GGG + chr2_4:55624161-55624180 Msa0336250:intron 30.0%
!! CCTACAAAAATGGGTTATTA+AGG - chr2_4:55624202-55624221 None:intergenic 30.0%
!! CCTTAATAACCCATTTTTGT+AGG + chr2_4:55624199-55624218 Msa0336250:intron 30.0%
!! CCACCGTCTAAAATTTTAAA+AGG - chr2_4:55624296-55624315 None:intergenic 30.0%
!!! CCTTTTAAAATTTTAGACGG+TGG + chr2_4:55624293-55624312 Msa0336250:intron 30.0%
AATATCACTACTTTGCATAG+TGG + chr2_4:55624399-55624418 Msa0336250:intron 30.0%
!!! GGAGAAGTTATTTTTTTCCT+AGG - chr2_4:55624669-55624688 None:intergenic 30.0%
CTTGATGCAAACAATGAAAA+TGG - chr2_4:55624690-55624709 None:intergenic 30.0%
! CATTTTCATTGTTTGCATCA+AGG + chr2_4:55624688-55624707 Msa0336250:intron 30.0%
AAAAGTTCATTCAAGCTTCA+TGG - chr2_4:55624732-55624751 None:intergenic 30.0%
! TTATCTAAAGTCATTCTTGG+CGG - chr2_4:55624794-55624813 None:intergenic 30.0%
AAATTAATGTCCCCAAATGT+TGG + chr2_4:55624819-55624838 Msa0336250:intron 30.0%
TCCATTATTAGAAGAATTGG+AGG + chr2_4:55624888-55624907 Msa0336250:intron 30.0%
TCCTCCAATTCTTCTAATAA+TGG - chr2_4:55624892-55624911 None:intergenic 30.0%
ATTATTAGAAGAATTGGAGG+AGG + chr2_4:55624891-55624910 Msa0336250:intron 30.0%
! TGTTCTAAATTCTGTTAGTG+TGG + chr2_4:55625221-55625240 Msa0336250:intron 30.0%
TTTCATGCCGTCAAAATATA+TGG + chr2_4:55625269-55625288 Msa0336250:intron 30.0%
CATTTCATTATCACTTCATC+AGG + chr2_4:55625307-55625326 Msa0336250:intron 30.0%
AGGTAAGATATTAAGCTTGT+TGG + chr2_4:55625366-55625385 Msa0336250:intron 30.0%
! GGTAAGATATTAAGCTTGTT+GGG + chr2_4:55625367-55625386 Msa0336250:intron 30.0%
TTATGGCTGTAGAACAAAAA+GGG + chr2_4:55625471-55625490 Msa0336250:intron 30.0%
CAATATCAAACTGACACAAA+GGG - chr2_4:55625629-55625648 None:intergenic 30.0%
ACAATATCAAACTGACACAA+AGG - chr2_4:55625630-55625649 None:intergenic 30.0%
CTATGTATCAATCAGTACTA+GGG - chr2_4:55625731-55625750 None:intergenic 30.0%
AAGTTGTATTGCCTTTACAA+AGG + chr2_4:55625763-55625782 Msa0336250:three_prime_UTR 30.0%
AGTTGTATTGCCTTTACAAA+GGG + chr2_4:55625764-55625783 Msa0336250:three_prime_UTR 30.0%
!!! GCAATGACGTTTTAAAATCA+TGG - chr2_4:55626034-55626053 None:intergenic 30.0%
! TAAATCATCTTCGATGATGG+TGG - chr2_4:55620212-55620231 None:intergenic 35.0%
!!! TCGCGTTTTTTTTTGTTGAC+AGG + chr2_4:55620457-55620476 Msa0336250:intron 35.0%
AGTGAAAAAGCAGTACAGAA+AGG + chr2_4:55620548-55620567 Msa0336250:intron 35.0%
!! CTTTGTAGCACTGAAACTTT+TGG + chr2_4:55620607-55620626 Msa0336250:intron 35.0%
! TCTACCATCTTTTCTACGAT+AGG - chr2_4:55620819-55620838 None:intergenic 35.0%
TGACATGTCAACAACAACAA+CGG - chr2_4:55621046-55621065 None:intergenic 35.0%
!! TAAAGCATTGACACAAACAC+AGG - chr2_4:55621078-55621097 None:intergenic 35.0%
TGTGGATGTTTACATTTGTC+AGG - chr2_4:55621187-55621206 None:intergenic 35.0%
TGACAAATGTAAACATCCAC+AGG + chr2_4:55621186-55621205 Msa0336250:CDS 35.0%
AACCTGAAACTTACTACTGT+AGG + chr2_4:55621465-55621484 Msa0336250:intron 35.0%
ATCCTACAGTAGTAAGTTTC+AGG - chr2_4:55621470-55621489 None:intergenic 35.0%
TAAACTTTACAACCAAAGCG+AGG + chr2_4:55621561-55621580 Msa0336250:intron 35.0%
! ACAGGAAAATTTGGTAGCTT+GGG + chr2_4:55621626-55621645 Msa0336250:intron 35.0%
TAGTGGAAGATAACTTCGAA+AGG + chr2_4:55621676-55621695 Msa0336250:intron 35.0%
TGACCAATACACTGATATGT+TGG + chr2_4:55621847-55621866 Msa0336250:intron 35.0%
TACATATATGATGCCTCAGA+AGG + chr2_4:55621871-55621890 Msa0336250:intron 35.0%
AGCCAAGTTAATTCAGCAAA+AGG + chr2_4:55622276-55622295 Msa0336250:CDS 35.0%
!! AGTTTTGTGACTTGATCTTG+AGG + chr2_4:55622529-55622548 Msa0336250:intron 35.0%
! TTGAGGTTGAAGGTTTTTGT+TGG + chr2_4:55622546-55622565 Msa0336250:intron 35.0%
! TGAGGTTGAAGGTTTTTGTT+GGG + chr2_4:55622547-55622566 Msa0336250:intron 35.0%
AGGTGTATACAGAACTGTAA+GGG - chr2_4:55622590-55622609 None:intergenic 35.0%
AAGGTGTATACAGAACTGTA+AGG - chr2_4:55622591-55622610 None:intergenic 35.0%
! GACCCGAATTAAAAGGTTTT+GGG - chr2_4:55622650-55622669 None:intergenic 35.0%
! AGACCCGAATTAAAAGGTTT+TGG - chr2_4:55622651-55622670 None:intergenic 35.0%
GGTGGGATAAAAAAAATAGG+GGG - chr2_4:55622699-55622718 None:intergenic 35.0%
GGGTGGGATAAAAAAAATAG+GGG - chr2_4:55622700-55622719 None:intergenic 35.0%
GGGGTGGGATAAAAAAAATA+GGG - chr2_4:55622701-55622720 None:intergenic 35.0%
AGGGGTGGGATAAAAAAAAT+AGG - chr2_4:55622702-55622721 None:intergenic 35.0%
GATAAAAAACAAAACAGGGG+TGG - chr2_4:55622717-55622736 None:intergenic 35.0%
GAGAAAGAAACATCTGAAGA+AGG + chr2_4:55622839-55622858 Msa0336250:CDS 35.0%
TATACATACCTCGTCAACTA+AGG - chr2_4:55622886-55622905 None:intergenic 35.0%
!!! TAGTTTTGTTAGGGTTCTCT+TGG + chr2_4:55622904-55622923 Msa0336250:intron 35.0%
AAATATACTCACACGAGAAG+GGG - chr2_4:55622957-55622976 None:intergenic 35.0%
GAAATATACTCACACGAGAA+GGG - chr2_4:55622958-55622977 None:intergenic 35.0%
TGAAATATACTCACACGAGA+AGG - chr2_4:55622959-55622978 None:intergenic 35.0%
TGTGTGTAATTAGACCACAA+GGG - chr2_4:55623010-55623029 None:intergenic 35.0%
TTGTGTGTAATTAGACCACA+AGG - chr2_4:55623011-55623030 None:intergenic 35.0%
GTCTAATTACACACAAGAAG+TGG + chr2_4:55623015-55623034 Msa0336250:intron 35.0%
GGAGAAGAAAAATGCAAATG+AGG + chr2_4:55623228-55623247 Msa0336250:CDS 35.0%
TTAATCTGTGAATGAGTGCA+TGG - chr2_4:55623275-55623294 None:intergenic 35.0%
TTAAGTGTGTCTGAACCAAT+TGG + chr2_4:55623338-55623357 Msa0336250:intron 35.0%
!!! GCACTAATCACTGTCATTTT+AGG - chr2_4:55623402-55623421 None:intergenic 35.0%
! CATGATGTTTTCCCAGATTT+TGG + chr2_4:55623513-55623532 Msa0336250:CDS 35.0%
!! TGTTTTCCCAGATTTTGGTA+TGG + chr2_4:55623518-55623537 Msa0336250:CDS 35.0%
TATTATGTAGATATCCGAGG+AGG + chr2_4:55623664-55623683 Msa0336250:intron 35.0%
AGGCAGATTAAAAAAGGATG+AGG + chr2_4:55623688-55623707 Msa0336250:CDS 35.0%
CAGATTAAAAAAGGATGAGG+AGG + chr2_4:55623691-55623710 Msa0336250:CDS 35.0%
AGGAGGAACAGAAAGAAATA+TGG + chr2_4:55623708-55623727 Msa0336250:CDS 35.0%
AAACTGCAAGCTGTGTTTAT+GGG + chr2_4:55623823-55623842 Msa0336250:intron 35.0%
!! CTGTGAAGTGTTCTAGAATA+TGG + chr2_4:55623904-55623923 Msa0336250:intron 35.0%
CATAGAATTGAAATCAGCCT+TGG - chr2_4:55624117-55624136 None:intergenic 35.0%
ATCATAGGTACTAATCATGG+GGG + chr2_4:55624149-55624168 Msa0336250:intron 35.0%
! ATCATGGGGGTAATATTTTG+GGG + chr2_4:55624162-55624181 Msa0336250:intron 35.0%
!!! GATTCCTTTTTTCAGGCAAT+TGG - chr2_4:55624457-55624476 None:intergenic 35.0%
TTCATTGTTTGCATCAAGGA+AGG + chr2_4:55624692-55624711 Msa0336250:intron 35.0%
TCATTGTTTGCATCAAGGAA+GGG + chr2_4:55624693-55624712 Msa0336250:intron 35.0%
! TATCTAAAGTCATTCTTGGC+GGG - chr2_4:55624793-55624812 None:intergenic 35.0%
TTGTCAAATGCCAACATTTG+GGG - chr2_4:55624832-55624851 None:intergenic 35.0%
CTTGTCAAATGCCAACATTT+GGG - chr2_4:55624833-55624852 None:intergenic 35.0%
! ACTTTTAGACTGCTGATGAA+AGG - chr2_4:55625144-55625163 None:intergenic 35.0%
! GGCATGAAATTTTTCTGACA+AGG - chr2_4:55625258-55625277 None:intergenic 35.0%
! AGCTGGAGAGATTTTATGAA+GGG + chr2_4:55625335-55625354 Msa0336250:CDS 35.0%
! TTTTATGAAGGGTGGAAAGA+AGG + chr2_4:55625346-55625365 Msa0336250:CDS 35.0%
ATGTGTCAAGTAGTAGTAGT+TGG - chr2_4:55625400-55625419 None:intergenic 35.0%
GCAAATCTATATGTGTTCGA+AGG - chr2_4:55625430-55625449 None:intergenic 35.0%
GTTATGGCTGTAGAACAAAA+AGG + chr2_4:55625470-55625489 Msa0336250:intron 35.0%
! TAAAAAAAGGCTAGGGTGTT+TGG + chr2_4:55625556-55625575 Msa0336250:exon 35.0%
GTCAATCAGTATTCATTTGG+AGG - chr2_4:55625702-55625721 None:intergenic 35.0%
CCTATGTATCAATCAGTACT+AGG - chr2_4:55625732-55625751 None:intergenic 35.0%
!! CCTAGTACTGATTGATACAT+AGG + chr2_4:55625729-55625748 Msa0336250:three_prime_UTR 35.0%
!! AGTACTGATTGATACATAGG+AGG + chr2_4:55625732-55625751 Msa0336250:three_prime_UTR 35.0%
TCAGTGTCTAACCTAAAATC+TGG - chr2_4:55625944-55625963 None:intergenic 35.0%
!!! GATTTTAGGTTAGACACTGA+TGG + chr2_4:55625944-55625963 Msa0336250:three_prime_UTR 35.0%
ATCATGGATATAGGTTTCCT+GGG - chr2_4:55626018-55626037 None:intergenic 35.0%
AATCATGGATATAGGTTTCC+TGG - chr2_4:55626019-55626038 None:intergenic 35.0%
CTGTAATGACTGTCGTTCAA+AGG + chr2_4:55620082-55620101 Msa0336250:five_prime_UTR 40.0%
AAAGAGACAATGAAGTCCTC+AGG + chr2_4:55620269-55620288 Msa0336250:CDS 40.0%
GCGAAAAACAAAGATACCTG+AGG - chr2_4:55620288-55620307 None:intergenic 40.0%
!! TGTAGCACTGAAACTTTTGG+TGG + chr2_4:55620610-55620629 Msa0336250:intron 40.0%
ACGTCAACACGACTACAAAT+TGG - chr2_4:55620722-55620741 None:intergenic 40.0%
AGCACCTATCGTAGAAAAGA+TGG + chr2_4:55620812-55620831 Msa0336250:intron 40.0%
ATGGTAGAAACAAGGTTGAG+TGG + chr2_4:55620831-55620850 Msa0336250:intron 40.0%
AGAAACAAGGTTGAGTGGTT+TGG + chr2_4:55620836-55620855 Msa0336250:intron 40.0%
GGTTTGGATATGTAGAGAGA+AGG + chr2_4:55620852-55620871 Msa0336250:intron 40.0%
AGTTGGATGACAGGACATTA+TGG + chr2_4:55620996-55621015 Msa0336250:intron 40.0%
ACAACAACGGATCAGCTATA+TGG - chr2_4:55621033-55621052 None:intergenic 40.0%
ATGTAAACATCCACAGGCAA+AGG + chr2_4:55621192-55621211 Msa0336250:CDS 40.0%
! GCACGTATTTTCTCACTGTT+GGG - chr2_4:55621518-55621537 None:intergenic 40.0%
! TGCACGTATTTTCTCACTGT+TGG - chr2_4:55621519-55621538 None:intergenic 40.0%
TTTACAACCAAAGCGAGGAT+TGG + chr2_4:55621566-55621585 Msa0336250:intron 40.0%
TTACAACCAAAGCGAGGATT+GGG + chr2_4:55621567-55621586 Msa0336250:intron 40.0%
! GACAGGAAAATTTGGTAGCT+TGG + chr2_4:55621625-55621644 Msa0336250:intron 40.0%
! AAAATTTGGTAGCTTGGGAG+AGG + chr2_4:55621631-55621650 Msa0336250:intron 40.0%
GTTATCTTCCACTATTGACG+CGG - chr2_4:55621670-55621689 None:intergenic 40.0%
ACTATCTGTGAGGAAATGTG+AGG - chr2_4:55621724-55621743 None:intergenic 40.0%
ACTGCAATCTCAAGAGTTTC+AGG + chr2_4:55621972-55621991 Msa0336250:intron 40.0%
TAAGGGTTGCATTCATCTCA+TGG + chr2_4:55622366-55622385 Msa0336250:intron 40.0%
TGACTTGATCTTGAGGTTGA+AGG + chr2_4:55622536-55622555 Msa0336250:intron 40.0%
TAAGGGTAAGTGCATAGACA+TGG - chr2_4:55622573-55622592 None:intergenic 40.0%
ACAGTTCTGTATACACCTTG+TGG + chr2_4:55622592-55622611 Msa0336250:intron 40.0%
CAGTTCTGTATACACCTTGT+GGG + chr2_4:55622593-55622612 Msa0336250:intron 40.0%
AGTTCTGTATACACCTTGTG+GGG + chr2_4:55622594-55622613 Msa0336250:intron 40.0%
AAATGTCTGTGCAGAAGCAA+GGG + chr2_4:55622752-55622771 Msa0336250:intron 40.0%
AATGAAGTCCTTAGTTGACG+AGG + chr2_4:55622875-55622894 Msa0336250:CDS 40.0%
AATATACTCACACGAGAAGG+GGG - chr2_4:55622956-55622975 None:intergenic 40.0%
ATGTCGTAGACTCATCCAAT+TGG - chr2_4:55623356-55623375 None:intergenic 40.0%
CTGATGCCATACCAAAATCT+GGG - chr2_4:55623527-55623546 None:intergenic 40.0%
TCTGATGCCATACCAAAATC+TGG - chr2_4:55623528-55623547 None:intergenic 40.0%
TCTCGCGTACATAATTTCTC+AGG - chr2_4:55623609-55623628 None:intergenic 40.0%
! TTTTAATCTGCCTTCCTCCT+CGG - chr2_4:55623681-55623700 None:intergenic 40.0%
GGAGGAAGGCAGATTAAAAA+AGG + chr2_4:55623682-55623701 Msa0336250:CDS 40.0%
! AAGAAAGCGTGAACATGAAG+AGG + chr2_4:55623733-55623752 Msa0336250:CDS 40.0%
GGAAGGAACAAGAGAAAAGA+GGG + chr2_4:55623760-55623779 Msa0336250:CDS 40.0%
CAAACTGCAAGCTGTGTTTA+TGG + chr2_4:55623822-55623841 Msa0336250:intron 40.0%
TCATGTAGGCTTGTGATAGA+TGG - chr2_4:55624339-55624358 None:intergenic 40.0%
CAATTGGTCGTTGACATAAG+TGG - chr2_4:55624441-55624460 None:intergenic 40.0%
ACGACCAATTGCCTGAAAAA+AGG + chr2_4:55624450-55624469 Msa0336250:intron 40.0%
TAACACTTCCTCTCACATGA+AGG + chr2_4:55624492-55624511 Msa0336250:intron 40.0%
CCTAGGAATGCTTTACAGTT+GGG - chr2_4:55624652-55624671 None:intergenic 40.0%
TCCTAGGAATGCTTTACAGT+TGG - chr2_4:55624653-55624672 None:intergenic 40.0%
! ATCTAAAGTCATTCTTGGCG+GGG - chr2_4:55624792-55624811 None:intergenic 40.0%
CCTTGTCAAATGCCAACATT+TGG - chr2_4:55624834-55624853 None:intergenic 40.0%
CCAAATGTTGGCATTTGACA+AGG + chr2_4:55624831-55624850 Msa0336250:intron 40.0%
CTTCATAAAATCTCTCCAGC+TGG - chr2_4:55625336-55625355 None:intergenic 40.0%
! CAGCTGGAGAGATTTTATGA+AGG + chr2_4:55625334-55625353 Msa0336250:CDS 40.0%
! TGGAGAGATTTTATGAAGGG+TGG + chr2_4:55625338-55625357 Msa0336250:CDS 40.0%
ATCTTCTGTCTTGAGCTTAG+GGG - chr2_4:55625508-55625527 None:intergenic 40.0%
GATCTTCTGTCTTGAGCTTA+GGG - chr2_4:55625509-55625528 None:intergenic 40.0%
! CTCTGAACGTAGGATTTGTT+AGG - chr2_4:55625531-55625550 None:intergenic 40.0%
CTAACAAATCCTACGTTCAG+AGG + chr2_4:55625529-55625548 Msa0336250:CDS 40.0%
GTTCAGAGGCCTGTAAAAAA+AGG + chr2_4:55625543-55625562 Msa0336250:CDS 40.0%
AGGCCTGTAAAAAAAGGCTA+GGG + chr2_4:55625549-55625568 Msa0336250:CDS 40.0%
!!! ACACCCTAGCCTTTTTTTAC+AGG - chr2_4:55625555-55625574 None:intergenic 40.0%
!! TTTATCTCTAGGGTCATGAG+AGG + chr2_4:55625657-55625676 Msa0336250:three_prime_UTR 40.0%
CCTGGGTATTTAACACTAAG+CGG - chr2_4:55626001-55626020 None:intergenic 40.0%
!! CATCTTCGATGATGGTGGAT+GGG - chr2_4:55620207-55620226 None:intergenic 45.0%
!! TCATCTTCGATGATGGTGGA+TGG - chr2_4:55620208-55620227 None:intergenic 45.0%
! GCACTGAAACTTTTGGTGGA+AGG + chr2_4:55620614-55620633 Msa0336250:intron 45.0%
!! TGTGCGACAGGTTTTAGTGT+TGG + chr2_4:55620646-55620665 Msa0336250:intron 45.0%
CACACGTGTCAGAATTGTGT+TGG - chr2_4:55620675-55620694 None:intergenic 45.0%
! TTGTAGTCGTGTTGACGTGT+CGG + chr2_4:55620724-55620743 Msa0336250:intron 45.0%
CTCCTGACTACAAAATCTCC+AGG - chr2_4:55620878-55620897 None:intergenic 45.0%
! CTGGAGATTTTGTAGTCAGG+AGG + chr2_4:55620876-55620895 Msa0336250:intron 45.0%
GCAGAGTAGTCAACTAGCTA+CGG + chr2_4:55620913-55620932 Msa0336250:intron 45.0%
TGGATGACAGGACATTATGG+TGG + chr2_4:55620999-55621018 Msa0336250:intron 45.0%
TAAACATCCACAGGCAAAGG+AGG + chr2_4:55621195-55621214 Msa0336250:CDS 45.0%
TACAACCAAAGCGAGGATTG+GGG + chr2_4:55621568-55621587 Msa0336250:intron 45.0%
TCTTTCTTCCGCGTCAATAG+TGG + chr2_4:55621659-55621678 Msa0336250:intron 45.0%
TCTCAAGAGTTTCAGGACGT+AGG + chr2_4:55621979-55621998 Msa0336250:intron 45.0%
! CTACTGTGATTTGCAACACC+TGG + chr2_4:55622407-55622426 Msa0336250:intron 45.0%
CGATGTTTGTCTCACATCTG+AGG + chr2_4:55622503-55622522 Msa0336250:intron 45.0%
CATTGATGAACTACCCCACA+AGG - chr2_4:55622610-55622629 None:intergenic 45.0%
GAAATGTCTGTGCAGAAGCA+AGG + chr2_4:55622751-55622770 Msa0336250:intron 45.0%
ACAGTCGGAAGAATTCAAGC+AGG + chr2_4:55623160-55623179 Msa0336250:CDS 45.0%
ATGTAGATATCCGAGGAGGA+AGG + chr2_4:55623668-55623687 Msa0336250:intron 45.0%
AGCGTGAACATGAAGAGGAA+TGG + chr2_4:55623738-55623757 Msa0336250:CDS 45.0%
GCGTGAACATGAAGAGGAAT+GGG + chr2_4:55623739-55623758 Msa0336250:CDS 45.0%
GAACATGAAGAGGAATGGGA+AGG + chr2_4:55623743-55623762 Msa0336250:CDS 45.0%
GGGAAGGAACAAGAGAAAAG+AGG + chr2_4:55623759-55623778 Msa0336250:CDS 45.0%
GCTCTTTGTACAGTTTGCCA+AGG + chr2_4:55624097-55624116 Msa0336250:intron 45.0%
!!! GGGTAATATTTTGGGGTCCT+TGG + chr2_4:55624169-55624188 Msa0336250:intron 45.0%
GCTAAATGCCTTCATGTGAG+AGG - chr2_4:55624503-55624522 None:intergenic 45.0%
! CCCAACTGTAAAGCATTCCT+AGG + chr2_4:55624649-55624668 Msa0336250:intron 45.0%
TCACCATCTAAGGAGCTCTT+AGG + chr2_4:55624919-55624938 Msa0336250:intron 45.0%
CAACCTAAGAGCTCCTTAGA+TGG - chr2_4:55624925-55624944 None:intergenic 45.0%
TCTTCTGTCTTGAGCTTAGG+GGG - chr2_4:55625507-55625526 None:intergenic 45.0%
GGATCTTCTGTCTTGAGCTT+AGG - chr2_4:55625510-55625529 None:intergenic 45.0%
! TTTTACAGGCCTCTGAACGT+AGG - chr2_4:55625541-55625560 None:intergenic 45.0%
GAGGCCTGTAAAAAAAGGCT+AGG + chr2_4:55625548-55625567 Msa0336250:CDS 45.0%
! AGGTTTTCTTGGACTCCTGT+TGG - chr2_4:55625597-55625616 None:intergenic 45.0%
CCGCTTAGTGTTAAATACCC+AGG + chr2_4:55625998-55626017 Msa0336250:three_prime_UTR 45.0%
GGATATGTAGAGAGAAGGCC+TGG + chr2_4:55620857-55620876 Msa0336250:intron 50.0%
! GGCCTGGAGATTTTGTAGTC+AGG + chr2_4:55620873-55620892 Msa0336250:intron 50.0%
AGTCAACTAGCTACGGACAG+AGG + chr2_4:55620920-55620939 Msa0336250:intron 50.0%
!! CGAGAAGGGGGAGTATTCTA+AGG - chr2_4:55622944-55622963 None:intergenic 50.0%
TCTGTCTTGCACAACCCTTG+TGG + chr2_4:55622993-55623012 Msa0336250:intron 50.0%
GAGCTCGTGTGAGACAGATA+TGG - chr2_4:55624064-55624083 None:intergenic 50.0%
!! AGACGGTGGGTGTTGTTATC+TGG + chr2_4:55624307-55624326 Msa0336250:intron 50.0%
GGAGGCAGTTTCACCATCTA+AGG + chr2_4:55624909-55624928 Msa0336250:intron 50.0%
CACTTCATCAGGTATCCAGC+TGG + chr2_4:55625318-55625337 Msa0336250:intron 50.0%
TCACAGGCGATCTATCCAAC+AGG + chr2_4:55625579-55625598 Msa0336250:three_prime_UTR 50.0%
! AAACTGACACAAAGGGCGCA+TGG - chr2_4:55625622-55625641 None:intergenic 50.0%
!! GGTCATGAGAGGCATCTCAA+TGG + chr2_4:55625668-55625687 Msa0336250:three_prime_UTR 50.0%
!! CCTAAAATCTGGCTCTCTGC+AGG - chr2_4:55625933-55625952 None:intergenic 50.0%
! CCTGCAGAGAGCCAGATTTT+AGG + chr2_4:55625930-55625949 Msa0336250:three_prime_UTR 50.0%
!! GACGTGTCGGTGTTGATGAG+TGG + chr2_4:55620737-55620756 Msa0336250:intron 55.0%
CCAAAAGCCTCCTTTGCCTG+TGG - chr2_4:55621205-55621224 None:intergenic 55.0%
! CCACAGGCAAAGGAGGCTTT+TGG + chr2_4:55621202-55621221 Msa0336250:CDS 55.0%
! CAGGCAAAGGAGGCTTTTGG+AGG + chr2_4:55621205-55621224 Msa0336250:CDS 55.0%
! AGGCTAGGGTGTTTGGTCAC+AGG + chr2_4:55625563-55625582 Msa0336250:exon 55.0%
! GGCGCATGGCTAGGTTTTCT+TGG - chr2_4:55625608-55625627 None:intergenic 55.0%
CCATGCCCCAATCCTCGCTT+TGG - chr2_4:55621576-55621595 None:intergenic 60.0%
CCAAAGCGAGGATTGGGGCA+TGG + chr2_4:55621573-55621592 Msa0336250:intron 60.0%
! GACACAAAGGGCGCATGGCT+AGG - chr2_4:55625617-55625636 None:intergenic 60.0%
GCTCTCTGCAGGCAGATGAC+TGG - chr2_4:55625922-55625941 None:intergenic 60.0%
AGGCGTGTCGCGTGTGCGAC+AGG + chr2_4:55620634-55620653 Msa0336250:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 55620060 55626070 55620060 ID=Msa0336250;Name=Msa0336250
chr2_4 mRNA 55620060 55626070 55620060 ID=Msa0336250-mRNA-1;Parent=Msa0336250;Name=Msa0336250-mRNA-1;_AED=0.06;_eAED=0.06;_QI=130|0.7|0.81|0.90|0.9|0.81|11|401|272
chr2_4 exon 55620060 55620290 55620060 ID=Msa0336250-mRNA-1:exon:16851;Parent=Msa0336250-mRNA-1
chr2_4 exon 55620479 55620548 55620479 ID=Msa0336250-mRNA-1:exon:16852;Parent=Msa0336250-mRNA-1
chr2_4 exon 55621166 55621226 55621166 ID=Msa0336250-mRNA-1:exon:16853;Parent=Msa0336250-mRNA-1
chr2_4 exon 55622220 55622297 55622220 ID=Msa0336250-mRNA-1:exon:16854;Parent=Msa0336250-mRNA-1
chr2_4 exon 55622823 55622896 55622823 ID=Msa0336250-mRNA-1:exon:16855;Parent=Msa0336250-mRNA-1
chr2_4 exon 55623137 55623250 55623137 ID=Msa0336250-mRNA-1:exon:16856;Parent=Msa0336250-mRNA-1
chr2_4 exon 55623495 55623581 55623495 ID=Msa0336250-mRNA-1:exon:16857;Parent=Msa0336250-mRNA-1
chr2_4 exon 55623674 55623781 55623674 ID=Msa0336250-mRNA-1:exon:16858;Parent=Msa0336250-mRNA-1
chr2_4 exon 55625329 55625367 55625329 ID=Msa0336250-mRNA-1:exon:16859;Parent=Msa0336250-mRNA-1
chr2_4 exon 55625483 55625804 55625483 ID=Msa0336250-mRNA-1:exon:16860;Parent=Msa0336250-mRNA-1
chr2_4 exon 55625905 55626070 55625905 ID=Msa0336250-mRNA-1:exon:16861;Parent=Msa0336250-mRNA-1
chr2_4 five_prime_UTR 55620060 55620189 55620060 ID=Msa0336250-mRNA-1:five_prime_utr;Parent=Msa0336250-mRNA-1
chr2_4 CDS 55620190 55620290 55620190 ID=Msa0336250-mRNA-1:cds;Parent=Msa0336250-mRNA-1
chr2_4 CDS 55620479 55620548 55620479 ID=Msa0336250-mRNA-1:cds;Parent=Msa0336250-mRNA-1
chr2_4 CDS 55621166 55621226 55621166 ID=Msa0336250-mRNA-1:cds;Parent=Msa0336250-mRNA-1
chr2_4 CDS 55622220 55622297 55622220 ID=Msa0336250-mRNA-1:cds;Parent=Msa0336250-mRNA-1
chr2_4 CDS 55622823 55622896 55622823 ID=Msa0336250-mRNA-1:cds;Parent=Msa0336250-mRNA-1
chr2_4 CDS 55623137 55623250 55623137 ID=Msa0336250-mRNA-1:cds;Parent=Msa0336250-mRNA-1
chr2_4 CDS 55623495 55623581 55623495 ID=Msa0336250-mRNA-1:cds;Parent=Msa0336250-mRNA-1
chr2_4 CDS 55623674 55623781 55623674 ID=Msa0336250-mRNA-1:cds;Parent=Msa0336250-mRNA-1
chr2_4 CDS 55625329 55625367 55625329 ID=Msa0336250-mRNA-1:cds;Parent=Msa0336250-mRNA-1
chr2_4 CDS 55625483 55625569 55625483 ID=Msa0336250-mRNA-1:cds;Parent=Msa0336250-mRNA-1
chr2_4 three_prime_UTR 55625570 55625804 55625570 ID=Msa0336250-mRNA-1:three_prime_utr;Parent=Msa0336250-mRNA-1
chr2_4 three_prime_UTR 55625905 55626070 55625905 ID=Msa0336250-mRNA-1:three_prime_utr;Parent=Msa0336250-mRNA-1
Gene Sequence

>Msa0336250

ATGGGAGAATCAAACCCATCCACCATCATCGAAGATGATTTACTTCTCAAAAATTTCTTCGCTGAAGTCAGCGAAGTTGAAAGAGACAATGAAGTCCTCAGGATTCTGGGTTGTTTTAAGTTGAATCCGTTTGAGCATTTAAACCTATCGTTTGATTCATCTATTGATGAAATATCATTGATGGTTCATCCTGACAAATGTAAACATCCACAGGCAAAGGAGGCTTTTGGAGCACTAGCAAAAGCACAACAATTATTACTCGATCCAAATGAAAGAGATTATCTTCTTAGCCAAGTTAATTCAGCAAAAGAAGAACTTAGAGTAAAGAGAAAGAAACATCTGAAGAAGGATACAGCCTCAAAAATGAAGTCCTTAGTTGACGAGGGAAAATATGATAAGCAATATGAACAGTCGGAAGAATTCAAGCAGGAGCTCAAACTTAAAGTTCGTGAACTATTAACAGAAAAAGAATGGAGGAGAAGAAAAATGCAAATGAGGAACGTTTGTTTTCGGGCACATGATGTTTTCCCAGATTTTGGTATGGCATCAGAAAGTGCTAGCGATAAGAAAATGAGATCATTAGAAATATCCGAGGAGGAAGGCAGATTAAAAAAGGATGAGGAGGAACAGAAAGAAATATGGAAAAGAAAGCGTGAACATGAAGAGGAATGGGAAGGAACAAGAGAAAAGAGGGTATCCAGCTGGAGAGATTTTATGAAGGGTGGAAAGAAGAACAAAAAGGGAGAAATTCGTCCCCCTAAGCTCAAGACAGAAGATCCTAACAAATCCTACGTTCAGAGGCCTGTAAAAAAAGGCTAG

Protein sequence

>Msa0336250

MGESNPSTIIEDDLLLKNFFAEVSEVERDNEVLRILGCFKLNPFEHLNLSFDSSIDEISLMVHPDKCKHPQAKEAFGALAKAQQLLLDPNERDYLLSQVNSAKEELRVKRKKHLKKDTASKMKSLVDEGKYDKQYEQSEEFKQELKLKVRELLTEKEWRRRKMQMRNVCFRAHDVFPDFGMASESASDKKMRSLEISEEEGRLKKDEEEQKEIWKRKREHEEEWEGTREKRVSSWRDFMKGGKKNKKGEIRPPKLKTEDPNKSYVQRPVKKG*