AlfalfaGEDB | Msa0336250

M. sativa cultivar zhongmu-4 / Msa0336250

KEGG: K09528
GO: GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030544 GO:0031072 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045171 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:1901360
PFAM: PF00226.34

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0336250	XP_003596904.1	86.380	279	2	2	1	272	1	250	1.13e-155	443

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0336250	sp\|O75937\|DNJC8_HUMAN	31.716	268	117	12	18	258	22	250	1.00e-14	75.1

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007990	Msa0336250	0.800410	1.460189e-48	-8.615850e-47
Msa0020930	Msa0336250	0.833749	4.459433e-56	-8.615850e-47
Msa0022550	Msa0336250	0.812989	3.212407e-51	-8.615850e-47
Msa0022750	Msa0336250	-0.803159	3.981075e-49	-8.615850e-47
Msa0026910	Msa0336250	0.819451	1.153770e-52	-8.615850e-47
Msa0027600	Msa0336250	0.815110	1.093164e-51	-8.615850e-47
Msa0032470	Msa0336250	0.800950	1.132908e-48	-8.615850e-47
Msa0036140	Msa0336250	0.803162	3.976301e-49	-8.615850e-47
Msa0042550	Msa0336250	0.824320	8.603052e-54	-8.615850e-47
Msa0043980	Msa0336250	0.835779	1.375286e-56	-8.615850e-47

Showing 1 to 10 of 319 entries

Previous1 2 3 4 5…32Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0336250	MtrunA17_Chr2g0322111	86.380	279	2	2	1	272	1	250	1.04e-159	443

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0336250	AT5G22080.1	70.609	279	42	3	1	272	1	246	6.87e-121	345
Msa0336250	AT5G22080.2	65.591	279	38	3	1	272	1	228	1.81e-106	308
Msa0336250	AT1G65280.2	36.364	99	48	2	1	92	272	362	8.34e-11	62.4
Msa0336250	AT1G65280.1	36.364	99	48	2	1	92	272	362	8.34e-11	62.4

Showing 1 to 4 of 4 entries

Previous1Next

Find 68 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGACACAAAGGGCGCA+TGG	0.611823	2_4:-55625619	None:intergenic
AAAGAGACAATGAAGTCCTC+AGG	0.532848	2_4:+55620269	Msa0336250:CDS
AAATATTATGTAGATATCCG+AGG	0.665580	2_4:+55623661	Msa0336250:intron
AAGAAAGCGTGAACATGAAG+AGG	0.566688	2_4:+55623733	Msa0336250:CDS
AAGTAAATCATCTTCGATGA+TGG	0.548035	2_4:-55620212	None:intergenic
AAGTTGTATTGCCTTTACAA+AGG	0.589384	2_4:+55625763	Msa0336250:three_prime_UTR
AATCATGGATATAGGTTTCC+TGG	0.318939	2_4:-55626016	None:intergenic
AATGAAGTCCTTAGTTGACG+AGG	0.658853	2_4:+55622875	Msa0336250:CDS
AATGTCAATCAGTATTCATT+TGG	0.350105	2_4:-55625702	None:intergenic
ACAATATCAAACTGACACAA+AGG	0.582509	2_4:-55625627	None:intergenic

Showing 1 to 10 of 68 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGTAAATCATCTTCGATGA+TGG	-	chr2_4:55620215-55620234	None:intergenic	30.0%
ACGCCGAAAATAAAGAAATT+AGG	+	chr2_4:55620385-55620404	Msa0336250:intron	30.0%
GATAGGTTTAAATGCTCAAA+CGG	-	chr2_4:55620507-55620526	None:intergenic	30.0%
CAATAGATGAATCAAACGAT+AGG	-	chr2_4:55620524-55620543	None:intergenic	30.0%
TTGACAGTATTAGAGAAAGT+TGG	+	chr2_4:55620786-55620805	Msa0336250:intron	30.0%
TGACAGTATTAGAGAAAGTT+GGG	+	chr2_4:55620787-55620806	Msa0336250:intron	30.0%
TAGAAAAGATGGTAGAAACA+AGG	+	chr2_4:55620823-55620842	Msa0336250:intron	30.0%
GGAGTTACGTATTAATAAGT+TGG	+	chr2_4:55620979-55620998	Msa0336250:intron	30.0%
GCCTCTTATAAAATTCTCTT+TGG	+	chr2_4:55621129-55621148	Msa0336250:intron	30.0%
CTGTTATTAAACTATCTGTG+AGG	-	chr2_4:55621734-55621753	None:intergenic	30.0%

Showing 1 to 10 of 361 entries

Previous1 2 3 4 5…37Next

Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	55620060	55626070	55620060	ID=Msa0336250;Name=Msa0336250
chr2_4	mRNA	55620060	55626070	55620060	ID=Msa0336250-mRNA-1;Parent=Msa0336250;Name=Msa0336250-mRNA-1;_AED=0.06;_eAED=0.06;_QI=130\|0.7\|0.81\|0.90\|0.9\|0.81\|11\|401\|272
chr2_4	exon	55620060	55620290	55620060	ID=Msa0336250-mRNA-1:exon:16851;Parent=Msa0336250-mRNA-1
chr2_4	exon	55620479	55620548	55620479	ID=Msa0336250-mRNA-1:exon:16852;Parent=Msa0336250-mRNA-1
chr2_4	exon	55621166	55621226	55621166	ID=Msa0336250-mRNA-1:exon:16853;Parent=Msa0336250-mRNA-1
chr2_4	exon	55622220	55622297	55622220	ID=Msa0336250-mRNA-1:exon:16854;Parent=Msa0336250-mRNA-1
chr2_4	exon	55622823	55622896	55622823	ID=Msa0336250-mRNA-1:exon:16855;Parent=Msa0336250-mRNA-1
chr2_4	exon	55623137	55623250	55623137	ID=Msa0336250-mRNA-1:exon:16856;Parent=Msa0336250-mRNA-1
chr2_4	exon	55623495	55623581	55623495	ID=Msa0336250-mRNA-1:exon:16857;Parent=Msa0336250-mRNA-1
chr2_4	exon	55623674	55623781	55623674	ID=Msa0336250-mRNA-1:exon:16858;Parent=Msa0336250-mRNA-1
chr2_4	exon	55625329	55625367	55625329	ID=Msa0336250-mRNA-1:exon:16859;Parent=Msa0336250-mRNA-1
chr2_4	exon	55625483	55625804	55625483	ID=Msa0336250-mRNA-1:exon:16860;Parent=Msa0336250-mRNA-1
chr2_4	exon	55625905	55626070	55625905	ID=Msa0336250-mRNA-1:exon:16861;Parent=Msa0336250-mRNA-1
chr2_4	five_prime_UTR	55620060	55620189	55620060	ID=Msa0336250-mRNA-1:five_prime_utr;Parent=Msa0336250-mRNA-1
chr2_4	CDS	55620190	55620290	55620190	ID=Msa0336250-mRNA-1:cds;Parent=Msa0336250-mRNA-1
chr2_4	CDS	55620479	55620548	55620479	ID=Msa0336250-mRNA-1:cds;Parent=Msa0336250-mRNA-1
chr2_4	CDS	55621166	55621226	55621166	ID=Msa0336250-mRNA-1:cds;Parent=Msa0336250-mRNA-1
chr2_4	CDS	55622220	55622297	55622220	ID=Msa0336250-mRNA-1:cds;Parent=Msa0336250-mRNA-1
chr2_4	CDS	55622823	55622896	55622823	ID=Msa0336250-mRNA-1:cds;Parent=Msa0336250-mRNA-1
chr2_4	CDS	55623137	55623250	55623137	ID=Msa0336250-mRNA-1:cds;Parent=Msa0336250-mRNA-1
chr2_4	CDS	55623495	55623581	55623495	ID=Msa0336250-mRNA-1:cds;Parent=Msa0336250-mRNA-1
chr2_4	CDS	55623674	55623781	55623674	ID=Msa0336250-mRNA-1:cds;Parent=Msa0336250-mRNA-1
chr2_4	CDS	55625329	55625367	55625329	ID=Msa0336250-mRNA-1:cds;Parent=Msa0336250-mRNA-1
chr2_4	CDS	55625483	55625569	55625483	ID=Msa0336250-mRNA-1:cds;Parent=Msa0336250-mRNA-1
chr2_4	three_prime_UTR	55625570	55625804	55625570	ID=Msa0336250-mRNA-1:three_prime_utr;Parent=Msa0336250-mRNA-1
chr2_4	three_prime_UTR	55625905	55626070	55625905	ID=Msa0336250-mRNA-1:three_prime_utr;Parent=Msa0336250-mRNA-1

Gene Sequence

>Msa0336250

ATGGGAGAATCAAACCCATCCACCATCATCGAAGATGATTTACTTCTCAAAAATTTCTTCGCTGAAGTCAGCGAAGTTGAAAGAGACAATGAAGTCCTCAGGATTCTGGGTTGTTTTAAGTTGAATCCGTTTGAGCATTTAAACCTATCGTTTGATTCATCTATTGATGAAATATCATTGATGGTTCATCCTGACAAATGTAAACATCCACAGGCAAAGGAGGCTTTTGGAGCACTAGCAAAAGCACAACAATTATTACTCGATCCAAATGAAAGAGATTATCTTCTTAGCCAAGTTAATTCAGCAAAAGAAGAACTTAGAGTAAAGAGAAAGAAACATCTGAAGAAGGATACAGCCTCAAAAATGAAGTCCTTAGTTGACGAGGGAAAATATGATAAGCAATATGAACAGTCGGAAGAATTCAAGCAGGAGCTCAAACTTAAAGTTCGTGAACTATTAACAGAAAAAGAATGGAGGAGAAGAAAAATGCAAATGAGGAACGTTTGTTTTCGGGCACATGATGTTTTCCCAGATTTTGGTATGGCATCAGAAAGTGCTAGCGATAAGAAAATGAGATCATTAGAAATATCCGAGGAGGAAGGCAGATTAAAAAAGGATGAGGAGGAACAGAAAGAAATATGGAAAAGAAAGCGTGAACATGAAGAGGAATGGGAAGGAACAAGAGAAAAGAGGGTATCCAGCTGGAGAGATTTTATGAAGGGTGGAAAGAAGAACAAAAAGGGAGAAATTCGTCCCCCTAAGCTCAAGACAGAAGATCCTAACAAATCCTACGTTCAGAGGCCTGTAAAAAAAGGCTAG

Protein sequence

>Msa0336250

MGESNPSTIIEDDLLLKNFFAEVSEVERDNEVLRILGCFKLNPFEHLNLSFDSSIDEISLMVHPDKCKHPQAKEAFGALAKAQQLLLDPNERDYLLSQVNSAKEELRVKRKKHLKKDTASKMKSLVDEGKYDKQYEQSEEFKQELKLKVRELLTEKEWRRRKMQMRNVCFRAHDVFPDFGMASESASDKKMRSLEISEEEGRLKKDEEEQKEIWKRKREHEEEWEGTREKRVSSWRDFMKGGKKNKKGEIRPPKLKTEDPNKSYVQRPVKKG*