AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0943270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0943270 MtrunA17_Chr6g0460211 100.000 149 0 0 1 149 1 149 1.74e-106 300
Msa0943270 MtrunA17_Chr3g0093271 99.329 149 1 0 1 149 52 200 4.50e-106 300
Msa0943270 MtrunA17_Chr5g0440931 99.329 149 1 0 1 149 1 149 6.63e-106 298
Msa0943270 MtrunA17_Chr7g0254731 98.658 149 2 0 1 149 1 149 1.79e-104 295
Msa0943270 MtrunA17_Chr1g0166281 78.378 148 32 0 1 148 1 148 2.67e-83 241
Msa0943270 MtrunA17_Chr1g0166281 47.692 65 34 0 85 149 12 76 4.12e-12 60.1
Msa0943270 MtrunA17_Chr1g0188171 77.703 148 33 0 1 148 1 148 4.41e-83 241
Msa0943270 MtrunA17_Chr1g0188171 45.070 71 36 1 82 149 6 76 2.21e-11 58.2
Msa0943270 MtrunA17_Chr7g0274101 62.838 148 55 0 1 148 1 148 1.75e-57 176
Msa0943270 MtrunA17_Chr1g0185001 58.503 147 60 1 1 147 1 146 3.46e-57 175
Msa0943270 MtrunA17_Chr1g0185001 40.260 77 45 1 73 149 1 76 5.04e-12 59.7
Msa0943270 MtrunA17_Chr5g0398751 51.007 149 71 1 1 149 1 147 3.68e-49 154
Msa0943270 MtrunA17_Chr3g0100541 53.425 146 53 1 1 146 41 171 2.27e-43 141
Msa0943270 MtrunA17_Chr8g0366401 45.946 148 77 1 4 148 9 156 2.65e-43 140
Msa0943270 MtrunA17_Chr7g0245231 45.455 143 78 0 4 146 22 164 3.76e-39 130
Msa0943270 MtrunA17_Chr7g0245231 46.970 66 35 0 84 149 29 94 2.47e-12 61.2
Msa0943270 MtrunA17_Chr1g0161211 47.945 146 72 1 4 149 42 183 2.99e-37 126
Msa0943270 MtrunA17_Chr6g0450921 44.056 143 80 0 4 146 21 163 3.15e-37 125
Msa0943270 MtrunA17_Chr6g0450921 43.421 76 43 0 74 149 18 93 1.60e-12 61.6
Msa0943270 MtrunA17_Chr3g0100511 46.897 145 62 1 1 145 41 170 1.06e-36 124
Msa0943270 MtrunA17_Chr4g0062221 43.262 141 78 1 8 146 7 147 1.30e-36 123
Msa0943270 MtrunA17_Chr4g0062221 46.875 64 34 0 16 79 90 153 1.09e-12 62.0
Msa0943270 MtrunA17_Chr3g0100561 46.207 145 63 1 1 145 41 170 1.47e-34 118
Msa0943270 MtrunA17_Chr8g0368681 42.657 143 80 1 6 146 6 148 2.04e-34 117
Msa0943270 MtrunA17_Chr8g0368681 39.706 68 41 0 12 79 87 154 7.87e-11 57.0
Msa0943270 MtrunA17_Chr8g0391691 48.855 131 67 0 12 142 36 166 7.15e-34 117
Msa0943270 MtrunA17_Chr8g0391691 54.688 64 29 0 6 69 103 166 3.56e-16 71.6
Msa0943270 MtrunA17_Chr4g0033601 44.928 138 74 1 11 146 4 141 6.08e-33 114
Msa0943270 MtrunA17_Chr4g0033601 44.118 68 36 1 8 73 74 141 6.99e-11 57.0
Msa0943270 MtrunA17_Chr8g0392951 44.444 135 74 1 12 146 24 157 7.92e-32 111
Msa0943270 MtrunA17_Chr8g0392951 43.284 67 38 0 7 73 91 157 2.13e-12 61.2
Msa0943270 MtrunA17_Chr3g0100471 68.000 75 24 0 1 75 41 115 3.31e-31 108
Msa0943270 MtrunA17_Chr5g0434951 42.963 135 76 1 12 146 4 137 8.86e-31 107
Msa0943270 MtrunA17_Chr5g0434951 39.706 68 41 0 8 75 72 139 2.93e-11 57.8
Msa0943270 MtrunA17_Chr3g0111371 42.963 135 73 1 12 146 5 135 1.24e-28 102
Msa0943270 MtrunA17_Chr3g0111371 43.750 64 36 0 12 75 74 137 5.15e-13 62.4
Msa0943270 MtrunA17_Chr1g0169581 39.416 137 81 1 12 146 4 140 2.94e-28 101
Msa0943270 MtrunA17_Chr1g0169581 43.750 64 36 0 12 75 79 142 2.56e-12 60.5
Msa0943270 MtrunA17_Chr6g0482731 40.288 139 81 2 12 149 26 163 3.16e-27 100
Msa0943270 MtrunA17_Chr6g0482731 43.836 73 41 0 6 78 93 165 5.37e-13 63.2
Msa0943270 MtrunA17_Chr5g0444171 40.268 149 85 3 1 148 386 531 6.81e-27 104
Msa0943270 MtrunA17_Chr7g0267751 41.096 146 83 2 1 146 429 571 7.26e-27 104
Msa0943270 MtrunA17_Chr7g0256171 44.286 140 76 1 11 148 4 143 9.20e-27 98.2
Msa0943270 MtrunA17_Chr7g0245911 40.000 145 78 3 11 146 46 190 1.85e-26 98.6
Msa0943270 MtrunA17_Chr7g0256701 40.816 147 82 3 5 146 66 212 2.43e-26 99.0
Msa0943270 MtrunA17_Chr4g0074811 39.456 147 85 3 1 146 385 528 2.73e-26 103
Msa0943270 MtrunA17_Chr8g0351681 39.189 148 82 3 7 146 44 191 1.22e-25 96.7
Msa0943270 MtrunA17_Chr1g0200601 39.865 148 82 3 1 146 324 466 1.58e-25 100
Msa0943270 MtrunA17_Chr8g0385341 38.356 146 87 2 1 146 324 466 1.76e-25 100
Msa0943270 MtrunA17_Chr1g0157131 37.162 148 87 3 1 146 368 511 2.42e-25 100
Msa0943270 MtrunA17_Chr4g0064231 40.523 153 73 2 12 146 64 216 2.79e-25 96.3
Msa0943270 MtrunA17_Chr4g0059951 37.838 148 87 4 1 146 367 511 3.21e-25 100
Msa0943270 MtrunA17_Chr1g0176751 37.671 146 88 2 1 146 418 560 3.30e-25 100
Msa0943270 MtrunA17_Chr3g0131181 36.986 146 89 2 1 146 323 465 5.22e-25 99.4
Msa0943270 MtrunA17_Chr5g0397101 38.514 148 85 3 1 146 360 503 6.22e-25 99.4
Msa0943270 MtrunA17_Chr3g0098951 37.662 154 89 2 1 148 377 529 1.35e-24 98.2
Msa0943270 MtrunA17_Chr8g0387671 37.162 148 87 3 1 146 360 503 1.35e-23 95.5
Msa0943270 MtrunA17_Chr1g0169621 33.537 164 82 2 12 148 4 167 4.17e-23 89.4
Msa0943270 MtrunA17_Chr5g0448721 35.616 146 91 2 1 146 390 532 7.02e-23 93.6
Msa0943270 MtrunA17_Chr7g0242561 35.616 146 93 1 1 146 350 494 7.48e-23 93.2
Msa0943270 MtrunA17_Chr1g0170281 34.932 146 92 2 1 146 412 554 1.40e-22 92.8
Msa0943270 MtrunA17_Chr0c02g0489761 36.986 146 90 2 1 146 372 515 3.66e-22 91.3
Msa0943270 MtrunA17_Chr7g0225921 33.333 141 91 3 8 147 2 140 3.90e-22 85.9
Msa0943270 MtrunA17_Chr7g0225921 40.299 67 40 0 7 73 74 140 4.36e-11 57.4
Msa0943270 MtrunA17_Chr2g0329371 41.429 140 78 2 11 146 63 202 6.54e-22 87.0
Msa0943270 MtrunA17_Chr4g0044961 35.766 137 86 1 10 146 55 189 1.22e-21 86.3
Msa0943270 MtrunA17_Chr5g0441691 36.054 147 90 3 1 146 362 505 1.59e-21 89.7
Msa0943270 MtrunA17_Chr4g0057651 35.714 140 80 3 12 147 6 139 1.60e-21 84.3
Msa0943270 MtrunA17_Chr3g0100501 38.194 144 36 2 1 144 41 131 1.92e-21 84.0
Msa0943270 MtrunA17_Chr3g0116151 32.374 139 83 2 13 146 7 139 2.43e-21 84.0
Msa0943270 MtrunA17_Chr3g0116141 32.374 139 83 2 13 146 6 138 2.55e-21 84.0
Msa0943270 MtrunA17_Chr5g0409441 32.847 137 92 0 6 142 16 152 6.04e-21 83.6
Msa0943270 MtrunA17_Chr4g0033371 34.694 147 93 3 1 147 366 509 6.81e-21 87.8
Msa0943270 MtrunA17_Chr3g0100461 64.815 54 19 0 93 146 53 106 1.07e-20 81.6
Msa0943270 MtrunA17_Chr3g0100461 42.667 75 36 1 1 75 41 108 2.59e-13 62.4
Msa0943270 MtrunA17_Chr4g0057661 34.286 140 82 3 12 147 6 139 4.95e-20 80.5
Msa0943270 MtrunA17_Chr1g0173541 31.081 148 101 1 1 148 346 492 5.62e-20 85.1
Msa0943270 MtrunA17_Chr4g0057641 34.286 140 82 3 12 147 6 139 6.61e-20 80.1
Msa0943270 MtrunA17_Chr7g0257751 31.081 148 101 1 1 148 352 498 1.63e-19 84.0
Msa0943270 MtrunA17_Chr6g0459231 28.571 140 99 1 8 147 4 142 3.09e-19 78.6
Msa0943270 MtrunA17_Chr5g0402361 36.029 136 86 1 12 147 48 182 1.30e-18 80.9
Msa0943270 MtrunA17_Chr5g0402361 35.000 140 83 3 12 147 220 355 1.10e-16 75.5
Msa0943270 MtrunA17_Chr5g0402361 28.834 163 88 3 12 146 120 282 4.34e-14 68.2
Msa0943270 MtrunA17_Chr4g0074791 33.333 147 83 5 1 146 390 522 2.14e-18 80.5
Msa0943270 MtrunA17_Chr5g0402331 35.000 140 83 3 12 147 48 183 9.93e-18 75.9
Msa0943270 MtrunA17_Chr8g0373691 32.593 135 89 2 13 146 54 187 1.44e-17 75.5
Msa0943270 MtrunA17_Chr1g0176421 32.374 139 91 2 1 139 455 590 3.90e-17 77.0
Msa0943270 MtrunA17_Chr7g0245371 32.192 146 87 2 13 146 25 170 3.11e-16 71.6
Msa0943270 MtrunA17_Chr5g0396261 33.036 112 73 1 36 145 1 112 4.86e-15 67.0
Msa0943270 MtrunA17_Chr3g0121191 47.059 68 36 0 6 73 150 217 2.53e-14 67.4
Msa0943270 MtrunA17_Chr3g0121191 32.847 137 82 1 11 147 92 218 7.86e-14 66.2
Msa0943270 MtrunA17_Chr5g0405421 27.632 152 98 4 1 146 395 540 7.44e-14 67.8
Msa0943270 MtrunA17_Chr7g0252401 29.861 144 92 4 1 142 23 159 5.26e-12 62.4
Msa0943270 MtrunA17_Chr4g0042491 44.595 74 41 0 73 146 102 175 6.95e-12 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0943270 AT3G43810.2 100.000 148 0 0 1 148 1 148 1.28e-106 303
Msa0943270 AT3G43810.2 45.455 77 41 1 73 149 1 76 4.87e-13 64.3
Msa0943270 AT3G43810.1 100.000 149 0 0 1 149 1 149 2.40e-106 300
Msa0943270 AT2G27030.3 99.329 149 1 0 1 149 1 149 4.05e-106 300
Msa0943270 AT2G27030.3 44.304 79 43 1 1 78 73 151 1.81e-13 64.7
Msa0943270 AT5G21274.1 99.329 149 1 0 1 149 1 149 7.60e-106 298
Msa0943270 AT3G56800.1 99.329 149 1 0 1 149 1 149 9.06e-106 298
Msa0943270 AT2G41110.1 99.329 149 1 0 1 149 1 149 9.06e-106 298
Msa0943270 AT2G27030.1 99.329 149 1 0 1 149 1 149 9.06e-106 298
Msa0943270 AT1G66410.1 97.315 149 4 0 1 149 1 149 2.46e-104 295
Msa0943270 AT5G37780.1 97.315 149 4 0 1 149 1 149 2.46e-104 295
Msa0943270 AT2G41110.2 91.925 161 1 1 1 149 1 161 7.30e-102 289
Msa0943270 AT1G66410.2 91.195 159 4 1 1 149 1 159 5.13e-101 286
Msa0943270 AT5G37780.2 88.415 164 4 1 1 149 1 164 4.69e-100 284
Msa0943270 AT5G37780.3 82.857 175 4 1 1 149 1 175 3.62e-98 280
Msa0943270 AT5G37780.4 97.581 124 3 0 26 149 13 136 7.11e-86 247
Msa0943270 AT5G37780.4 45.455 77 41 1 1 76 60 136 6.60e-14 64.7
Msa0943270 AT3G22930.1 76.389 144 34 0 4 147 27 170 5.23e-80 234
Msa0943270 AT4G14640.1 74.825 143 36 0 5 147 6 148 3.64e-79 231
Msa0943270 AT3G43810.4 100.000 113 0 0 37 149 1 113 1.24e-78 228
Msa0943270 AT3G43810.4 45.455 77 41 1 1 76 37 113 6.11e-14 64.3
Msa0943270 AT3G43810.3 100.000 113 0 0 37 149 1 113 1.24e-78 228
Msa0943270 AT3G43810.3 45.455 77 41 1 1 76 37 113 6.11e-14 64.3
Msa0943270 AT1G66410.4 97.345 113 3 0 37 149 1 113 3.43e-77 224
Msa0943270 AT1G66410.4 45.455 77 41 1 1 76 37 113 1.52e-14 65.9
Msa0943270 AT1G66410.3 97.345 113 3 0 37 149 1 113 3.43e-77 224
Msa0943270 AT1G66410.3 45.455 77 41 1 1 76 37 113 1.52e-14 65.9
Msa0943270 AT4G14640.2 72.951 122 33 0 26 147 9 130 1.27e-65 196
Msa0943270 AT4G14640.2 46.774 62 33 0 12 73 68 129 4.27e-13 62.8
Msa0943270 AT2G41090.1 64.430 149 50 1 1 149 1 146 5.74e-61 186
Msa0943270 AT2G41100.7 57.229 166 54 2 1 149 55 220 1.61e-54 173
Msa0943270 AT2G41100.7 62.766 94 32 1 4 97 148 238 6.06e-31 112
Msa0943270 AT2G41100.7 45.669 127 53 2 36 146 1 127 1.72e-29 108
Msa0943270 AT2G41100.6 57.229 166 54 2 1 149 55 220 1.61e-54 173
Msa0943270 AT2G41100.6 62.766 94 32 1 4 97 148 238 6.06e-31 112
Msa0943270 AT2G41100.6 45.669 127 53 2 36 146 1 127 1.72e-29 108
Msa0943270 AT2G41100.3 57.229 166 54 2 1 149 55 220 1.61e-54 173
Msa0943270 AT2G41100.3 62.766 94 32 1 4 97 148 238 6.06e-31 112
Msa0943270 AT2G41100.3 45.669 127 53 2 36 146 1 127 1.72e-29 108
Msa0943270 AT2G41100.4 57.229 166 54 2 1 149 90 255 4.23e-54 173
Msa0943270 AT2G41100.4 51.852 162 62 2 1 146 1 162 4.91e-50 163
Msa0943270 AT2G41100.4 62.766 94 32 1 4 97 183 273 1.22e-30 112
Msa0943270 AT2G41100.1 57.229 166 54 2 1 149 90 255 4.23e-54 173
Msa0943270 AT2G41100.1 51.852 162 62 2 1 146 1 162 4.91e-50 163
Msa0943270 AT2G41100.1 62.766 94 32 1 4 97 183 273 1.22e-30 112
Msa0943270 AT4G14640.3 73.786 103 27 0 5 107 6 108 7.13e-54 166
Msa0943270 AT3G22930.2 73.786 103 27 0 4 106 27 129 3.58e-52 162
Msa0943270 AT3G22930.2 46.774 62 33 0 85 146 35 96 3.45e-11 57.8
Msa0943270 AT1G12310.1 49.660 147 72 1 3 149 4 148 4.52e-47 150
Msa0943270 AT1G62820.1 48.980 147 73 1 3 149 4 148 8.99e-47 149
Msa0943270 AT3G51920.1 50.676 148 73 0 1 148 1 148 2.34e-46 148
Msa0943270 AT1G32250.1 42.763 152 81 1 1 146 5 156 9.72e-41 134
Msa0943270 AT3G50360.1 47.183 142 75 0 5 146 20 161 9.16e-40 132
Msa0943270 AT3G50360.1 45.714 70 38 0 80 149 22 91 4.50e-13 63.5
Msa0943270 AT4G37010.2 43.662 142 80 0 5 146 24 165 1.36e-35 121
Msa0943270 AT4G37010.1 43.662 142 80 0 5 146 20 161 1.76e-35 121
Msa0943270 AT2G41100.2 53.077 130 44 2 37 149 1 130 4.19e-35 121
Msa0943270 AT2G41100.2 62.766 94 32 1 4 97 58 148 4.48e-32 113
Msa0943270 AT2G41100.5 61.856 97 34 1 1 97 1 94 5.39e-35 119
Msa0943270 AT2G41100.5 50.649 77 37 1 73 149 1 76 1.53e-17 74.7
Msa0943270 AT1G18530.1 42.069 145 76 2 7 146 2 143 7.79e-34 116
Msa0943270 AT1G18530.1 42.647 68 39 0 12 79 82 149 1.56e-11 59.3
Msa0943270 AT1G24620.1 46.763 139 73 1 9 147 34 171 2.32e-33 116
Msa0943270 AT1G24620.1 49.254 67 34 0 7 73 105 171 1.85e-13 64.7
Msa0943270 AT3G25600.1 41.060 151 81 2 1 146 1 148 9.71e-33 114
Msa0943270 AT3G25600.1 41.176 68 40 0 12 79 87 154 2.18e-11 58.9
Msa0943270 AT3G03000.1 43.836 146 81 1 4 148 12 157 3.14e-32 112
Msa0943270 AT1G18210.2 42.222 135 74 1 12 146 23 153 4.26e-31 110
Msa0943270 AT1G18210.1 42.222 135 74 1 12 146 23 153 4.26e-31 110
Msa0943270 AT1G05990.1 44.604 139 74 2 11 146 4 142 4.42e-31 109
Msa0943270 AT1G66400.1 43.478 138 76 1 12 147 15 152 6.18e-31 109
Msa0943270 AT5G37770.1 42.446 139 76 1 12 146 17 155 8.53e-30 106
Msa0943270 AT5G37770.1 44.615 65 36 0 10 74 92 156 1.41e-13 64.7
Msa0943270 AT5G37770.2 42.446 139 76 1 12 146 17 155 8.53e-30 106
Msa0943270 AT5G37770.2 44.615 65 36 0 10 74 92 156 1.41e-13 64.7
Msa0943270 AT1G73630.1 40.146 137 78 1 12 148 20 152 2.05e-29 105
Msa0943270 AT4G03290.1 45.390 141 72 2 11 146 4 144 2.48e-29 105
Msa0943270 AT4G03290.1 46.875 64 32 1 14 75 83 146 1.96e-11 58.9
Msa0943270 AT2G43290.1 42.657 143 75 3 11 146 64 206 2.51e-29 106
Msa0943270 AT1G76040.1 41.096 146 84 2 1 146 167 310 4.78e-29 108
Msa0943270 AT1G76040.4 41.096 146 84 2 1 146 167 310 4.78e-29 108
Msa0943270 AT1G76040.2 41.096 146 84 2 1 146 405 548 6.41e-28 108
Msa0943270 AT3G59440.1 42.336 137 76 2 12 146 51 186 3.81e-27 100
Msa0943270 AT2G15680.1 37.324 142 87 1 5 146 43 182 1.28e-26 99.0
Msa0943270 AT5G23580.1 39.726 146 85 2 1 146 316 458 1.72e-26 103
Msa0943270 AT4G21940.1 39.597 149 86 3 1 148 395 540 6.80e-26 102
Msa0943270 AT4G21940.2 39.597 149 86 3 1 148 395 540 8.49e-26 102
Msa0943270 AT4G12860.1 40.580 138 80 1 11 146 4 141 3.08e-25 94.7
Msa0943270 AT4G23650.1 38.514 148 85 3 1 146 372 515 3.74e-25 100
Msa0943270 AT4G23650.1 43.478 69 36 1 82 147 377 445 5.13e-11 59.7
Msa0943270 AT1G35670.1 37.671 146 88 2 1 146 320 462 4.56e-25 99.8
Msa0943270 AT4G09570.1 38.514 148 84 3 1 146 319 461 6.67e-25 99.4
Msa0943270 AT3G07490.1 41.304 138 79 1 11 146 4 141 7.27e-25 93.6
Msa0943270 AT4G04720.2 38.255 149 88 3 1 148 373 518 1.42e-24 98.6
Msa0943270 AT4G04720.1 38.255 149 88 3 1 148 373 518 1.42e-24 98.6
Msa0943270 AT3G10660.2 36.301 146 90 2 1 146 480 622 2.11e-24 98.2
Msa0943270 AT3G10660.1 36.301 146 90 2 1 146 480 622 2.11e-24 98.2
Msa0943270 AT4G38230.1 36.986 146 89 2 1 146 174 316 2.27e-24 96.7
Msa0943270 AT5G19360.1 40.136 147 84 3 1 146 362 505 2.66e-24 97.8
Msa0943270 AT4G38230.4 36.986 146 89 2 1 146 318 460 6.40e-24 96.7
Msa0943270 AT4G38230.3 36.986 146 89 2 1 146 318 460 6.40e-24 96.7
Msa0943270 AT4G38230.2 36.986 146 89 2 1 146 348 490 6.53e-24 96.7
Msa0943270 AT1G61950.1 38.514 148 85 3 1 146 393 536 6.68e-24 96.7
Msa0943270 AT3G10190.1 40.146 137 79 3 12 146 70 205 7.08e-24 92.4
Msa0943270 AT5G12180.1 39.456 147 85 3 1 146 367 510 1.15e-23 95.9
Msa0943270 AT5G04870.1 35.616 146 91 2 1 146 444 586 2.22e-23 95.5
Msa0943270 AT1G74740.1 35.570 149 93 3 1 148 353 499 4.29e-23 94.4
Msa0943270 AT3G20410.2 36.301 146 91 2 1 146 385 528 1.02e-22 93.2
Msa0943270 AT3G20410.1 36.301 146 91 2 1 146 385 528 1.02e-22 93.2
Msa0943270 AT2G17290.1 35.616 146 91 2 1 146 379 521 1.56e-22 92.8
Msa0943270 AT2G17290.2 35.616 146 91 2 1 146 379 521 1.56e-22 92.8
Msa0943270 AT3G50770.1 36.429 140 84 2 12 146 64 203 2.10e-22 88.6
Msa0943270 AT3G50770.1 44.118 68 38 0 82 149 61 128 8.40e-13 63.5
Msa0943270 AT4G04740.4 36.986 146 88 3 2 146 363 505 4.19e-22 91.7
Msa0943270 AT4G04740.6 36.986 146 88 3 2 146 363 505 4.19e-22 91.7
Msa0943270 AT4G04740.5 36.986 146 88 3 2 146 363 505 4.19e-22 91.7
Msa0943270 AT4G04740.3 36.986 146 88 3 2 146 363 505 4.19e-22 91.7
Msa0943270 AT4G04740.1 36.986 146 88 3 2 146 363 505 4.19e-22 91.7
Msa0943270 AT4G04740.7 36.986 146 88 3 2 146 363 505 4.19e-22 91.7
Msa0943270 AT2G38910.1 34.932 146 92 2 1 146 428 570 4.60e-22 91.7
Msa0943270 AT4G04695.1 36.242 149 91 3 1 148 325 470 4.69e-22 91.3
Msa0943270 AT4G35310.2 34.932 146 92 2 1 146 391 533 4.90e-22 91.7
Msa0943270 AT4G35310.1 34.932 146 92 2 1 146 391 533 4.90e-22 91.7
Msa0943270 AT5G17470.1 37.500 136 82 2 15 148 5 139 5.92e-22 85.9
Msa0943270 AT5G17470.1 47.541 61 32 0 14 74 79 139 2.79e-12 60.8
Msa0943270 AT1G50700.1 34.932 146 93 2 1 146 367 510 8.56e-22 90.9
Msa0943270 AT4G04700.1 38.095 147 87 3 1 146 325 468 1.48e-21 90.1
Msa0943270 AT5G42380.1 36.232 138 87 1 10 146 47 184 2.16e-21 85.5
Msa0943270 AT1G18890.1 37.333 150 89 4 1 148 357 503 5.25e-21 88.6
Msa0943270 AT3G57530.1 35.374 147 91 3 1 146 357 500 1.19e-20 87.4
Msa0943270 AT5G12480.2 34.228 149 96 2 1 148 259 406 1.22e-20 87.0
Msa0943270 AT2G36180.1 41.176 136 76 3 15 147 3 137 1.39e-20 82.4
Msa0943270 AT5G12480.1 34.228 149 96 2 1 148 353 500 1.47e-20 87.4
Msa0943270 AT3G03400.1 37.600 125 76 1 17 139 10 134 2.30e-20 81.6
Msa0943270 AT3G03410.1 35.556 135 78 1 14 148 4 129 9.75e-20 79.7
Msa0943270 AT3G51850.1 32.877 146 97 1 1 146 348 492 1.04e-19 84.7
Msa0943270 AT2G41410.1 34.459 148 94 3 4 148 62 209 1.44e-19 81.6
Msa0943270 AT5G19450.2 32.215 149 99 2 1 148 351 498 7.69e-19 82.4
Msa0943270 AT5G19450.1 32.215 149 99 2 1 148 351 498 7.69e-19 82.4
Msa0943270 AT4G04710.3 34.694 147 92 3 1 146 312 455 1.02e-18 82.0
Msa0943270 AT4G04710.2 34.694 147 92 3 1 146 326 469 1.04e-18 82.0
Msa0943270 AT4G04710.1 34.694 147 92 3 1 146 339 482 1.09e-18 82.0
Msa0943270 AT2G41860.1 31.507 146 99 1 1 146 348 492 7.48e-18 79.3
Msa0943270 AT2G41860.2 31.507 146 99 1 1 146 348 492 8.08e-18 79.3
Msa0943270 AT4G04710.4 34.899 149 91 4 1 146 339 484 1.48e-17 78.6
Msa0943270 AT1G50700.2 30.233 172 92 3 1 146 367 536 2.21e-17 78.2
Msa0943270 AT2G31500.1 32.000 150 97 4 1 147 360 507 9.73e-17 76.3
Msa0943270 AT4G20780.1 33.775 151 78 3 17 146 34 183 1.43e-16 73.2
Msa0943270 AT4G04740.2 34.848 132 82 3 2 132 363 491 4.52e-16 74.3
Msa0943270 AT5G44460.1 33.566 143 83 2 16 146 32 174 3.72e-15 69.3
Msa0943270 AT1G76040.3 36.634 101 63 1 1 101 405 504 1.46e-14 70.1
Msa0943270 AT4G21940.3 37.374 99 61 1 1 99 395 492 2.30e-14 69.3
Msa0943270 AT1G76650.1 32.168 143 90 2 7 146 38 176 3.73e-14 66.6
Msa0943270 AT1G76650.3 32.168 143 90 2 7 146 38 176 3.73e-14 66.6
Msa0943270 AT5G66210.1 27.632 152 98 4 1 146 358 503 4.46e-14 68.6
Msa0943270 AT5G66210.2 27.632 152 98 4 1 146 358 503 4.46e-14 68.6
Msa0943270 AT2G17890.1 27.632 152 98 5 1 146 404 549 5.35e-14 68.6
Msa0943270 AT3G51850.2 33.962 106 69 1 1 106 348 452 5.42e-14 68.6
Msa0943270 AT1G76640.1 31.852 135 86 2 16 146 26 158 8.35e-14 65.1
Msa0943270 AT5G49480.1 28.758 153 101 3 1 146 7 158 5.68e-13 63.2
Msa0943270 AT1G21550.1 30.719 153 82 4 11 147 9 153 1.17e-12 62.0
Msa0943270 AT1G50700.3 35.354 99 63 1 1 99 367 464 1.59e-12 64.3
Msa0943270 AT1G76650.2 31.469 143 81 3 7 146 38 166 1.42e-11 59.3
Msa0943270 AT5G66210.3 26.718 131 90 3 1 125 358 488 2.67e-11 60.8
Msa0943270 AT4G36070.1 27.273 154 100 5 1 148 367 514 7.55e-11 59.3
Msa0943270 AT4G36070.2 27.273 154 100 5 1 148 367 514 7.77e-11 59.3

Find 62 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTTCTACCATTCATATTT+TGG 0.145819 6_3:-18896460 Msa0943270:three_prime_UTR
ATTTAAGAAAATGTTGATTA+AGG 0.236694 6_3:-18896689 Msa0943270:three_prime_UTR
GGAGCTGAAAGAGGCGTTTC+GGG 0.325103 6_3:-18896924 Msa0943270:CDS
CCCAACTGAGGCAGAGCTTC+AGG 0.327616 6_3:-18897047 Msa0943270:CDS
GGAACTGTTATGCGTTCATT+GGG 0.343588 6_3:-18897076 Msa0943270:CDS
TTGATTAAGGAAATGACAAT+AGG 0.351653 6_3:-18896676 Msa0943270:three_prime_UTR
TGGAACTGTTATGCGTTCAT+TGG 0.360083 6_3:-18897077 Msa0943270:CDS
ATGGTTAAATGTTTGATTAG+TGG 0.365514 6_3:-18896578 Msa0943270:three_prime_UTR
AGGAGCTGAAAGAGGCGTTT+CGG 0.391958 6_3:-18896925 Msa0943270:CDS
CTAGATTAACTTACTTACTT+AGG 0.402748 6_3:+18896333 None:intergenic
CGATCAGATCTCTGAGTTCA+AGG 0.407885 6_3:-18899820 Msa0943270:CDS
AGCTTTCAGCTTATTCGATA+AGG 0.414465 6_3:-18899796 Msa0943270:CDS
TCCTGAAGCTCTGCCTCAGT+TGG 0.419465 6_3:+18897046 None:intergenic
TGATTAAGGAAATGACAATA+GGG 0.430729 6_3:-18896675 Msa0943270:three_prime_UTR
CATCGGTGAGCTTCTCGCCT+AGG 0.431368 6_3:+18896840 None:intergenic
GAGTGAGGTTTAAGTGGCTT+AGG 0.434605 6_3:-18896365 Msa0943270:three_prime_UTR
GTGGTAAGTGCTGCTGCTAT+TGG 0.453660 6_3:-18896559 Msa0943270:three_prime_UTR
CCTGAAGCTCTGCCTCAGTT+GGG 0.457983 6_3:+18897047 None:intergenic
TTTAGAGAGAGAAACTAAAT+CGG 0.468195 6_3:+18899889 None:intergenic
AAACTACGAGGAATTCGTTA+AGG 0.480590 6_3:-18896765 Msa0943270:CDS
ATCCGTGAGGCTGATGTTGA+TGG 0.484617 6_3:-18896800 Msa0943270:CDS
TGCATCACAACCAAGGAGCT+TGG 0.485199 6_3:-18897097 Msa0943270:CDS
CGCCTCTTTCAGCTCCTCCT+CGG 0.490822 6_3:+18896931 None:intergenic
CATAACAGTTCCAAGCTCCT+TGG 0.491995 6_3:+18897087 None:intergenic
CCCTGAGTTTCTTAACCTCA+TGG 0.495316 6_3:-18896978 Msa0943270:CDS
TTTAAGTGGCTTAGGACTTG+TGG 0.499295 6_3:-18896357 Msa0943270:three_prime_UTR
AATGGTGAGTGAGGTTTAAG+TGG 0.506534 6_3:-18896371 Msa0943270:three_prime_UTR
TGCTATTGGTTGTGGTCGAA+TGG 0.507018 6_3:-18896545 Msa0943270:three_prime_UTR
ACCATTCACCAAAATATGAA+TGG 0.516525 6_3:+18896452 None:intergenic
AGTGCTGCTGCTATTGGTTG+TGG 0.518859 6_3:-18896553 Msa0943270:three_prime_UTR
CATCTCATCGACTTCTTCAT+CGG 0.523419 6_3:+18896823 None:intergenic
GCCATGAGGTTAAGAAACTC+AGG 0.525054 6_3:+18896977 None:intergenic
GTGGATATGATGTGAAAGAA+AGG 0.525262 6_3:+18896722 None:intergenic
CTCCGAGGAGGAGCTGAAAG+AGG 0.542657 6_3:-18896933 Msa0943270:CDS
CTCTTCTTGAATGGTGAGTG+AGG 0.543550 6_3:-18896380 Msa0943270:three_prime_UTR
CGCCTAGGTTGGTCATCACA+TGG 0.545849 6_3:+18896855 None:intergenic
GGTGAGCTTCTCGCCTAGGT+TGG 0.557746 6_3:+18896844 None:intergenic
TTCAGCTTATTCGATAAGGA+TGG 0.562759 6_3:-18899792 Msa0943270:CDS
AAGGAAATGACAATAGGGGA+GGG 0.576403 6_3:-18896670 Msa0943270:three_prime_UTR
CCTTCATCTTCCTTGCCATG+AGG 0.583416 6_3:+18896963 None:intergenic
AAGAAGAAGAAAAGCGACGA+TGG 0.585072 6_3:-18899859 Msa0943270:exon
CCTCATGGCAAGGAAGATGA+AGG 0.591761 6_3:-18896963 Msa0943270:CDS
ATCAATGAAGTAGATGCTGA+TGG 0.594359 6_3:-18897019 Msa0943270:CDS
CACCATCAACATCAGCCTCA+CGG 0.595594 6_3:+18896798 None:intergenic
GATTAAGGAAATGACAATAG+GGG 0.598312 6_3:-18896674 Msa0943270:three_prime_UTR
TAAGGAAATGACAATAGGGG+AGG 0.604451 6_3:-18896671 Msa0943270:three_prime_UTR
GGAATTCGTTAAGGTCATGA+TGG 0.606144 6_3:-18896756 Msa0943270:CDS
AGTTTCTTAACCTCATGGCA+AGG 0.615477 6_3:-18896973 Msa0943270:CDS
GAGGCTGATGTTGATGGTGA+TGG 0.620773 6_3:-18896794 Msa0943270:CDS
GAAGTAGATGCTGATGGGAA+TGG 0.624358 6_3:-18897013 Msa0943270:CDS
CGCCATGTGATGACCAACCT+AGG 0.632480 6_3:-18896857 Msa0943270:CDS
GCAATGATTACTACAAAGCA+CGG 0.642557 6_3:+18896625 None:intergenic
CCATGAGGTTAAGAAACTCA+GGG 0.643314 6_3:+18896978 None:intergenic
TTATTCGATAAGGATGGCGA+TGG 0.647329 6_3:-18899786 Msa0943270:intron
TACAGGTTGCATCACAACCA+AGG 0.657872 6_3:-18897104 Msa0943270:intron
GAACTGTTATGCGTTCATTG+GGG 0.667564 6_3:-18897075 Msa0943270:CDS
GATGAAGGACACTGACTCCG+AGG 0.671085 6_3:-18896948 Msa0943270:CDS
TCAATGAAGTAGATGCTGAT+GGG 0.676011 6_3:-18897018 Msa0943270:CDS
GAAGGACACTGACTCCGAGG+AGG 0.706486 6_3:-18896945 Msa0943270:CDS
ATTGGGGCAAAACCCAACTG+AGG 0.728233 6_3:-18897059 Msa0943270:CDS
TGATGGTCAAATAAACTACG+AGG 0.754916 6_3:-18896777 Msa0943270:CDS
AGTCGATGAGATGATCCGTG+AGG 0.760734 6_3:-18896813 Msa0943270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTGTTTTTTAATTTAATTT+AGG - chr6_3:18896812-18896831 Msa0943270:CDS 10.0%
!!! CTATTTTCTTAAATTATTAT+CGG + chr6_3:18897179-18897198 None:intergenic 10.0%
!! AATAAAATGTAAAAAAGAAA+GGG + chr6_3:18899658-18899677 None:intergenic 10.0%
!! AAATAAAATGTAAAAAAGAA+AGG + chr6_3:18899659-18899678 None:intergenic 10.0%
!!! TGATAGTTACTATTTTATTA+CGG - chr6_3:18896942-18896961 Msa0943270:CDS 15.0%
!!! AACTTTTATTCATGATAATA+TGG + chr6_3:18898776-18898795 None:intergenic 15.0%
!!! GTTGTTGATTATTATATATA+TGG - chr6_3:18899123-18899142 Msa0943270:intron 15.0%
!!! ATCAACATTTTCTTAAATTT+AGG + chr6_3:18899567-18899586 None:intergenic 15.0%
!!! ATTTAAGAAAATGTTGATTA+AGG - chr6_3:18899569-18899588 Msa0943270:intron 15.0%
!!! CTTTTTTACATTTTATTTCA+TGG - chr6_3:18899661-18899680 Msa0943270:intron 15.0%
!!! AAAGAAAATTGTGATTTGTT+AGG - chr6_3:18896854-18896873 Msa0943270:CDS 20.0%
!!! TTTAAGTTATGATAGTTCTA+AGG - chr6_3:18896900-18896919 Msa0943270:CDS 20.0%
!! ATTACAATCATTATCATTGT+CGG + chr6_3:18897468-18897487 None:intergenic 20.0%
!! ATCATTTAACCATTATATCA+AGG + chr6_3:18897527-18897546 None:intergenic 20.0%
!!! ATCCATAAATAATTTTCCAA+TGG - chr6_3:18897605-18897624 Msa0943270:intron 20.0%
!! AACCATTGGAAAATTATTTA+TGG + chr6_3:18897610-18897629 None:intergenic 20.0%
!!! TTTTCATTCAATCAAAATTG+AGG + chr6_3:18898009-18898028 None:intergenic 20.0%
!!! GTCAATAACACTTTAAAAAA+GGG + chr6_3:18898157-18898176 None:intergenic 20.0%
!!! AGTCAATAACACTTTAAAAA+AGG + chr6_3:18898158-18898177 None:intergenic 20.0%
!! TTATTCAATATTGTCAATAG+TGG - chr6_3:18898298-18898317 Msa0943270:intron 20.0%
!! TATTCAATATTGTCAATAGT+GGG - chr6_3:18898299-18898318 Msa0943270:intron 20.0%
!! ACAACACTTTCTATTAAATA+GGG - chr6_3:18898374-18898393 Msa0943270:intron 20.0%
!!! TTCTTAAATTTAGGTTTTTG+TGG + chr6_3:18899558-18899577 None:intergenic 20.0%
!!! TTTTATAATCTCTTCTTGAA+TGG - chr6_3:18899869-18899888 Msa0943270:five_prime_UTR 20.0%
! TTTAGAGAGAGAAACTAAAT+CGG + chr6_3:18896372-18896391 None:intergenic 25.0%
!!! TTTGTGATACGATTTTGATT+AGG - chr6_3:18896572-18896591 Msa0943270:three_prime_UTR 25.0%
!! TTATGATTTGTGATGTGATT+TGG - chr6_3:18896627-18896646 Msa0943270:three_prime_UTR 25.0%
!! TATTTTATTACGGTAGTGAT+AGG - chr6_3:18896952-18896971 Msa0943270:CDS 25.0%
!!! GTTTACTTGTTACTTTATCA+TGG - chr6_3:18897131-18897150 Msa0943270:intron 25.0%
! TAATGATTGTAATTCCAATG+AGG - chr6_3:18897475-18897494 Msa0943270:intron 25.0%
!! TGTCAATAACACTTTGAAAA+GGG + chr6_3:18897571-18897590 None:intergenic 25.0%
!! ATGTCAATAACACTTTGAAA+AGG + chr6_3:18897572-18897591 None:intergenic 25.0%
! TGATTCACTATTTAGTACAA+AGG + chr6_3:18897804-18897823 None:intergenic 25.0%
! GACAACACTTTCTATTAAAT+AGG - chr6_3:18898373-18898392 Msa0943270:intron 25.0%
! TTAGAACTCTACTATGATAT+AGG - chr6_3:18898420-18898439 Msa0943270:intron 25.0%
! ATTAGCCACATAACTAAAAT+GGG + chr6_3:18898939-18898958 None:intergenic 25.0%
! TATTAGCCACATAACTAAAA+TGG + chr6_3:18898940-18898959 None:intergenic 25.0%
! ATTAGTTAGATGATTATGGT+TGG + chr6_3:18899022-18899041 None:intergenic 25.0%
! GAGAATTAGTTAGATGATTA+TGG + chr6_3:18899026-18899045 None:intergenic 25.0%
! TAACTAATTCTCATCTAACT+AGG - chr6_3:18899034-18899053 Msa0943270:intron 25.0%
! TAATAAACAACAAGCCATAT+AGG - chr6_3:18899073-18899092 Msa0943270:intron 25.0%
! AATAAACAACAAGCCATATA+GGG - chr6_3:18899074-18899093 Msa0943270:intron 25.0%
! TTGATTAAGGAAATGACAAT+AGG - chr6_3:18899582-18899601 Msa0943270:intron 25.0%
! TGATTAAGGAAATGACAATA+GGG - chr6_3:18899583-18899602 Msa0943270:intron 25.0%
! ATGGTTAAATGTTTGATTAG+TGG - chr6_3:18899680-18899699 Msa0943270:intron 25.0%
!! AGTTTCTACCATTCATATTT+TGG - chr6_3:18899798-18899817 Msa0943270:CDS 25.0%
! CTAGATTAACTTACTTACTT+AGG + chr6_3:18899928-18899947 None:intergenic 25.0%
!! TTTGGATTAGAAATTTTGCC+AGG - chr6_3:18896645-18896664 Msa0943270:three_prime_UTR 30.0%
! TTAGAAATTTTGCCAGGATT+TGG - chr6_3:18896651-18896670 Msa0943270:three_prime_UTR 30.0%
ATCAAACAAAAACCAAATCC+TGG + chr6_3:18896666-18896685 None:intergenic 30.0%
ACCTATACAGTATGACAAAT+CGG + chr6_3:18897092-18897111 None:intergenic 30.0%
! GTCAATAACACTTTGAAAAG+GGG + chr6_3:18897570-18897589 None:intergenic 30.0%
TTATTCAGTGTTGTGAATCA+CGG - chr6_3:18897709-18897728 Msa0943270:intron 30.0%
TCACTATTTAGTACAAAGGA+GGG + chr6_3:18897800-18897819 None:intergenic 30.0%
TTCACTATTTAGTACAAAGG+AGG + chr6_3:18897801-18897820 None:intergenic 30.0%
AATAGTGAATCACAGAACAA+TGG - chr6_3:18897812-18897831 Msa0943270:intron 30.0%
AACTTAGTGTTGTAAAACAG+AGG + chr6_3:18897869-18897888 None:intergenic 30.0%
AAAAAAAGTTGAACACACGT+TGG - chr6_3:18898025-18898044 Msa0943270:intron 30.0%
TTGTGGCTTATAAACTAGTA+CGG - chr6_3:18898056-18898075 Msa0943270:intron 30.0%
ATCAAGTAACCATCATATCA+AGG + chr6_3:18898114-18898133 None:intergenic 30.0%
!!! TGTATGAGTTTTGAGAAACA+TGG - chr6_3:18898233-18898252 Msa0943270:intron 30.0%
!!! TGACAGGTTTTGAAAGATAT+GGG - chr6_3:18898260-18898279 Msa0943270:intron 30.0%
TGGTTCAGATACTTGAAAAA+TGG - chr6_3:18898878-18898897 Msa0943270:intron 30.0%
!!! GATTTCCCATTTTAGTTATG+TGG - chr6_3:18898931-18898950 Msa0943270:intron 30.0%
CTAGCTAGTAAGATGATTAA+TGG + chr6_3:18898991-18899010 None:intergenic 30.0%
CATTAATCATCTTACTAGCT+AGG - chr6_3:18898989-18899008 Msa0943270:intron 30.0%
CATCAATTCATTTCCCTATA+TGG + chr6_3:18899090-18899109 None:intergenic 30.0%
TATATATGGTGCAAACTTAC+AGG - chr6_3:18899137-18899156 Msa0943270:intron 30.0%
GATTAAGGAAATGACAATAG+GGG - chr6_3:18899584-18899603 Msa0943270:intron 30.0%
!!! ACCATTCATATTTTGGTGAA+TGG - chr6_3:18899805-18899824 Msa0943270:CDS 30.0%
ACCATTCACCAAAATATGAA+TGG + chr6_3:18899809-18899828 None:intergenic 30.0%
AGCTTTCAGCTTATTCGATA+AGG - chr6_3:18896462-18896481 Msa0943270:three_prime_UTR 35.0%
TTCAGCTTATTCGATAAGGA+TGG - chr6_3:18896466-18896485 Msa0943270:three_prime_UTR 35.0%
TAGAAGTGATTGAACTTGCA+TGG - chr6_3:18897001-18897020 Msa0943270:CDS 35.0%
! TCCGATTTGTCATACTGTAT+AGG - chr6_3:18897088-18897107 Msa0943270:CDS 35.0%
TAACACGACGTCAACATATA+TGG + chr6_3:18897218-18897237 None:intergenic 35.0%
! TAGATGTGTTGTTGCTACAA+AGG + chr6_3:18897275-18897294 None:intergenic 35.0%
ACTAACAAACAAAGTGTGTC+CGG + chr6_3:18897419-18897438 None:intergenic 35.0%
GTAATTCCAATGAGGAAGTA+AGG - chr6_3:18897483-18897502 Msa0943270:intron 35.0%
CTTATACCTTACTTCCTCAT+TGG + chr6_3:18897492-18897511 None:intergenic 35.0%
AAACTCTCGCCTTGATATAA+TGG - chr6_3:18897515-18897534 Msa0943270:intron 35.0%
CAAACAAACTGACAAACCAT+TGG + chr6_3:18897624-18897643 None:intergenic 35.0%
!!! GTCTTGAGTTTTGAGAAACA+TGG - chr6_3:18897643-18897662 Msa0943270:intron 35.0%
!! TTTTGAGAAACATGGCATGA+TGG - chr6_3:18897651-18897670 Msa0943270:intron 35.0%
!! ACACGTTGGCAATATTTTTG+TGG - chr6_3:18898039-18898058 Msa0943270:intron 35.0%
AAACTCTCACCTTGATATGA+TGG - chr6_3:18898102-18898121 Msa0943270:intron 35.0%
TTAAAAAAGGGATGCAGATG+TGG + chr6_3:18898145-18898164 None:intergenic 35.0%
!!! GTGACAGGTTTTGAAAGATA+TGG - chr6_3:18898259-18898278 Msa0943270:intron 35.0%
TGTAACAATGCCAACATCAA+GGG + chr6_3:18898693-18898712 None:intergenic 35.0%
ATGTAACAATGCCAACATCA+AGG + chr6_3:18898694-18898713 None:intergenic 35.0%
TTGATGTTGGCATTGTTACA+TGG - chr6_3:18898693-18898712 Msa0943270:intron 35.0%
TACATGGCTTATATACGAGA+AGG - chr6_3:18898709-18898728 Msa0943270:intron 35.0%
ACATGGCTTATATACGAGAA+GGG - chr6_3:18898710-18898729 Msa0943270:intron 35.0%
TATGTGGCTAATATACTAGC+AGG - chr6_3:18898947-18898966 Msa0943270:intron 35.0%
ATGTGGCTAATATACTAGCA+GGG - chr6_3:18898948-18898967 Msa0943270:intron 35.0%
ATCAATGAAGTAGATGCTGA+TGG - chr6_3:18899239-18899258 Msa0943270:intron 35.0%
TCAATGAAGTAGATGCTGAT+GGG - chr6_3:18899240-18899259 Msa0943270:intron 35.0%
! GTTTTTGACAAGGATCAGAA+CGG - chr6_3:18899356-18899375 Msa0943270:intron 35.0%
TGATGGTCAAATAAACTACG+AGG - chr6_3:18899481-18899500 Msa0943270:intron 35.0%
AAACTACGAGGAATTCGTTA+AGG - chr6_3:18899493-18899512 Msa0943270:intron 35.0%
GTGGATATGATGTGAAAGAA+AGG + chr6_3:18899539-18899558 None:intergenic 35.0%
GCAATGATTACTACAAAGCA+CGG + chr6_3:18899636-18899655 None:intergenic 35.0%
AAGAAGAAGAAAAGCGACGA+TGG - chr6_3:18896399-18896418 Msa0943270:three_prime_UTR 40.0%
TTATTCGATAAGGATGGCGA+TGG - chr6_3:18896472-18896491 Msa0943270:three_prime_UTR 40.0%
AGTATGACAAATCGGATCGA+AGG + chr6_3:18897084-18897103 None:intergenic 40.0%
ATGTTGACGTCGTGTTAGTA+TGG - chr6_3:18897221-18897240 Msa0943270:intron 40.0%
! GTTGTTGCTACAAAGGTGTA+AGG + chr6_3:18897268-18897287 None:intergenic 40.0%
GACATTTGTCGATGTCATGT+CGG + chr6_3:18897318-18897337 None:intergenic 40.0%
TAGTACGGTGAGAGAAGTAA+GGG - chr6_3:18898071-18898090 Msa0943270:intron 40.0%
TGAACAAACTCGCAAGCAAT+AGG + chr6_3:18898211-18898230 None:intergenic 40.0%
! ATAGGCATAGTGCTGCTATT+TGG - chr6_3:18898438-18898457 Msa0943270:intron 40.0%
AGTTGAATACACACTGACAC+TGG - chr6_3:18898600-18898619 Msa0943270:intron 40.0%
! CTAACTAACATGGGTGCTAT+TGG + chr6_3:18898639-18898658 None:intergenic 40.0%
TCTCCAGCACTAACTAACAT+GGG + chr6_3:18898648-18898667 None:intergenic 40.0%
!! GTATATGTGACTAGTCTGTG+TGG - chr6_3:18898810-18898829 Msa0943270:intron 40.0%
AGCTTGATCTCATAACCTCA+AGG - chr6_3:18898851-18898870 Msa0943270:intron 40.0%
GCTTGATCTCATAACCTCAA+GGG - chr6_3:18898852-18898871 Msa0943270:intron 40.0%
CTTGATCTCATAACCTCAAG+GGG - chr6_3:18898853-18898872 Msa0943270:intron 40.0%
TGGAACTGTTATGCGTTCAT+TGG - chr6_3:18899181-18899200 Msa0943270:intron 40.0%
GGAACTGTTATGCGTTCATT+GGG - chr6_3:18899182-18899201 Msa0943270:intron 40.0%
GAACTGTTATGCGTTCATTG+GGG - chr6_3:18899183-18899202 Msa0943270:intron 40.0%
CCATGAGGTTAAGAAACTCA+GGG + chr6_3:18899283-18899302 None:intergenic 40.0%
AGTTTCTTAACCTCATGGCA+AGG - chr6_3:18899285-18899304 Msa0943270:intron 40.0%
!! CATCTCATCGACTTCTTCAT+CGG + chr6_3:18899438-18899457 None:intergenic 40.0%
GGAATTCGTTAAGGTCATGA+TGG - chr6_3:18899502-18899521 Msa0943270:intron 40.0%
TAAGGAAATGACAATAGGGG+AGG - chr6_3:18899587-18899606 Msa0943270:intron 40.0%
AAGGAAATGACAATAGGGGA+GGG - chr6_3:18899588-18899607 Msa0943270:intron 40.0%
AATGGTGAGTGAGGTTTAAG+TGG - chr6_3:18899887-18899906 Msa0943270:five_prime_UTR 40.0%
TTTAAGTGGCTTAGGACTTG+TGG - chr6_3:18899901-18899920 Msa0943270:five_prime_UTR 40.0%
CGATCAGATCTCTGAGTTCA+AGG - chr6_3:18896438-18896457 Msa0943270:three_prime_UTR 45.0%
! ACACTTTGAAAAGGGGTTGC+AGG + chr6_3:18897563-18897582 None:intergenic 45.0%
TCACGGATCACAGCAAATAG+TGG - chr6_3:18897726-18897745 Msa0943270:intron 45.0%
CACGGATCACAGCAAATAGT+GGG - chr6_3:18897727-18897746 Msa0943270:intron 45.0%
!! ACAGAGGCATTTCAGCATAG+TGG + chr6_3:18897853-18897872 None:intergenic 45.0%
CTAGTACGGTGAGAGAAGTA+AGG - chr6_3:18898070-18898089 Msa0943270:intron 45.0%
TGAGAAACATGGCATGTGAC+AGG - chr6_3:18898244-18898263 Msa0943270:intron 45.0%
TCACACTTTAGTCTGTAGCG+TGG + chr6_3:18898339-18898358 None:intergenic 45.0%
CTCTCCAGCACTAACTAACA+TGG + chr6_3:18898649-18898668 None:intergenic 45.0%
! CATGTTAGTTAGTGCTGGAG+AGG - chr6_3:18898647-18898666 Msa0943270:intron 45.0%
GGATGCATTACCCTTGATGT+TGG - chr6_3:18898680-18898699 Msa0943270:intron 45.0%
AGAAGGGTGAGAGATGTAAG+TGG - chr6_3:18898726-18898745 Msa0943270:intron 45.0%
TACAGGTTGCATCACAACCA+AGG - chr6_3:18899154-18899173 Msa0943270:intron 45.0%
CATAACAGTTCCAAGCTCCT+TGG + chr6_3:18899174-18899193 None:intergenic 45.0%
GAAGTAGATGCTGATGGGAA+TGG - chr6_3:18899245-18899264 Msa0943270:intron 45.0%
CCCTGAGTTTCTTAACCTCA+TGG - chr6_3:18899280-18899299 Msa0943270:intron 45.0%
GCCATGAGGTTAAGAAACTC+AGG + chr6_3:18899284-18899303 None:intergenic 45.0%
! TGCTATTGGTTGTGGTCGAA+TGG - chr6_3:18899713-18899732 Msa0943270:intron 45.0%
CTCTTCTTGAATGGTGAGTG+AGG - chr6_3:18899878-18899897 Msa0943270:five_prime_UTR 45.0%
GAGTGAGGTTTAAGTGGCTT+AGG - chr6_3:18899893-18899912 Msa0943270:five_prime_UTR 45.0%
!! TCAAAATAAAAAAAAAAAAA+AGG + chr6_3:18896517-18896536 None:intergenic 5.0%
CTGTCAATGTGTCAGTGTCG+TGG - chr6_3:18897376-18897395 Msa0943270:intron 50.0%
GAGAAACATGGCATGATGGC+AGG - chr6_3:18897655-18897674 Msa0943270:intron 50.0%
!! TGGCAGGTGTCGAAAGATAC+TGG - chr6_3:18897671-18897690 Msa0943270:intron 50.0%
CACTTTAGTCTGTAGCGTGG+TGG + chr6_3:18898336-18898355 None:intergenic 50.0%
GCACCCATGTTAGTTAGTGC+TGG - chr6_3:18898642-18898661 Msa0943270:intron 50.0%
TGCTGGAGAGGAGTAACACT+TGG - chr6_3:18898659-18898678 Msa0943270:intron 50.0%
AGGGTGAGAGATGTAAGTGG+TGG - chr6_3:18898729-18898748 Msa0943270:intron 50.0%
! GAGAGATGTAAGTGGTGGAG+AGG - chr6_3:18898734-18898753 Msa0943270:intron 50.0%
TCTCATAACCTCAAGGGGCA+TGG - chr6_3:18898858-18898877 Msa0943270:intron 50.0%
TATCTGAACCATGCCCCTTG+AGG + chr6_3:18898869-18898888 None:intergenic 50.0%
TGCATCACAACCAAGGAGCT+TGG - chr6_3:18899161-18899180 Msa0943270:intron 50.0%
ATTGGGGCAAAACCCAACTG+AGG - chr6_3:18899199-18899218 Msa0943270:intron 50.0%
CCTTCATCTTCCTTGCCATG+AGG + chr6_3:18899298-18899317 None:intergenic 50.0%
CCTCATGGCAAGGAAGATGA+AGG - chr6_3:18899295-18899314 Msa0943270:intron 50.0%
!! AGGAGCTGAAAGAGGCGTTT+CGG - chr6_3:18899333-18899352 Msa0943270:intron 50.0%
!!! GGCGTTTCGGGTTTTTGACA+AGG - chr6_3:18899346-18899365 Msa0943270:intron 50.0%
AGTCGATGAGATGATCCGTG+AGG - chr6_3:18899445-18899464 Msa0943270:intron 50.0%
ATCCGTGAGGCTGATGTTGA+TGG - chr6_3:18899458-18899477 Msa0943270:intron 50.0%
CACCATCAACATCAGCCTCA+CGG + chr6_3:18899463-18899482 None:intergenic 50.0%
!! GAGGCTGATGTTGATGGTGA+TGG - chr6_3:18899464-18899483 Msa0943270:intron 50.0%
! GTGGTAAGTGCTGCTGCTAT+TGG - chr6_3:18899699-18899718 Msa0943270:intron 50.0%
! AGTGCTGCTGCTATTGGTTG+TGG - chr6_3:18899705-18899724 Msa0943270:intron 50.0%
GGTTGTGAGTGCATCGTAGC+CGG - chr6_3:18897397-18897416 Msa0943270:intron 55.0%
CCTGAAGCTCTGCCTCAGTT+GGG + chr6_3:18899214-18899233 None:intergenic 55.0%
TCCTGAAGCTCTGCCTCAGT+TGG + chr6_3:18899215-18899234 None:intergenic 55.0%
!! GATGAAGGACACTGACTCCG+AGG - chr6_3:18899310-18899329 Msa0943270:intron 55.0%
!! GGAGCTGAAAGAGGCGTTTC+GGG - chr6_3:18899334-18899353 Msa0943270:intron 55.0%
CGCCATGTGATGACCAACCT+AGG - chr6_3:18899401-18899420 Msa0943270:intron 55.0%
!! CGCCTAGGTTGGTCATCACA+TGG + chr6_3:18899406-18899425 None:intergenic 55.0%
GACACTCACGTGTCAGCCAC+TGG - chr6_3:18897053-18897072 Msa0943270:CDS 60.0%
! CGGATCGAAGGTGTGTCCAG+TGG + chr6_3:18897072-18897091 None:intergenic 60.0%
CCCAACTGAGGCAGAGCTTC+AGG - chr6_3:18899211-18899230 Msa0943270:intron 60.0%
!! GAAGGACACTGACTCCGAGG+AGG - chr6_3:18899313-18899332 Msa0943270:intron 60.0%
CTCCGAGGAGGAGCTGAAAG+AGG - chr6_3:18899325-18899344 Msa0943270:intron 60.0%
CGCCTCTTTCAGCTCCTCCT+CGG + chr6_3:18899330-18899349 None:intergenic 60.0%
GGTGAGCTTCTCGCCTAGGT+TGG + chr6_3:18899417-18899436 None:intergenic 60.0%
CATCGGTGAGCTTCTCGCCT+AGG + chr6_3:18899421-18899440 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 18896311 18899969 18896311 ID=Msa0943270;Name=Msa0943270
chr6_3 mRNA 18896311 18899969 18896311 ID=Msa0943270-mRNA-1;Parent=Msa0943270;Name=Msa0943270-mRNA-1;_AED=0.09;_eAED=0.09;_QI=107|1|1|1|1|1|2|437|149
chr6_3 exon 18896311 18897121 18896311 ID=Msa0943270-mRNA-1:exon:5611;Parent=Msa0943270-mRNA-1
chr6_3 exon 18899787 18899969 18899787 ID=Msa0943270-mRNA-1:exon:5610;Parent=Msa0943270-mRNA-1
chr6_3 five_prime_UTR 18899863 18899969 18899863 ID=Msa0943270-mRNA-1:five_prime_utr;Parent=Msa0943270-mRNA-1
chr6_3 CDS 18899787 18899862 18899787 ID=Msa0943270-mRNA-1:cds;Parent=Msa0943270-mRNA-1
chr6_3 CDS 18896748 18897121 18896748 ID=Msa0943270-mRNA-1:cds;Parent=Msa0943270-mRNA-1
chr6_3 three_prime_UTR 18896311 18896747 18896311 ID=Msa0943270-mRNA-1:three_prime_utr;Parent=Msa0943270-mRNA-1
Gene Sequence

>Msa0943270

ATGGCAGATCAACTCACAGACGATCAGATCTCTGAGTTCAAGGAAGCTTTCAGCTTATTCGATAAGGATGGCGATGGTTGCATCACAACCAAGGAGCTTGGAACTGTTATGCGTTCATTGGGGCAAAACCCAACTGAGGCAGAGCTTCAGGACATGATCAATGAAGTAGATGCTGATGGGAATGGTACTATTGACTTCCCTGAGTTTCTTAACCTCATGGCAAGGAAGATGAAGGACACTGACTCCGAGGAGGAGCTGAAAGAGGCGTTTCGGGTTTTTGACAAGGATCAGAACGGTTTCATTTCTGCTGCTGAGCTTCGCCATGTGATGACCAACCTAGGCGAGAAGCTCACCGATGAAGAAGTCGATGAGATGATCCGTGAGGCTGATGTTGATGGTGATGGTCAAATAAACTACGAGGAATTCGTTAAGGTCATGATGGCTAAATGA
Protein sequence

>Msa0943270

MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK*