AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0666530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0666530 MtrunA17_Chr4g0004911 93.373 498 20 5 1 490 1 493 0.0 902
Msa0666530 MtrunA17_Chr7g0243891 53.800 500 156 16 53 490 59 545 1.20e-151 443
Msa0666530 MtrunA17_Chr3g0106491 45.223 471 201 14 49 486 61 507 2.27e-105 323
Msa0666530 MtrunA17_Chr5g0432161 48.565 418 137 14 50 401 85 490 1.03e-102 319
Msa0666530 MtrunA17_Chr5g0445311 40.955 398 187 10 53 407 47 439 5.43e-77 251
Msa0666530 MtrunA17_Chr5g0418191 53.629 248 96 5 177 406 148 394 1.84e-75 243
Msa0666530 MtrunA17_Chr3g0101131 53.909 243 82 6 177 394 240 477 2.21e-74 245
Msa0666530 MtrunA17_Chr7g0218081 40.000 410 175 14 53 423 113 490 3.98e-74 243
Msa0666530 MtrunA17_Chr4g0042831 48.750 240 104 4 177 416 142 362 5.63e-71 231
Msa0666530 MtrunA17_Chr7g0249311 43.910 312 105 7 170 416 169 475 2.20e-65 223
Msa0666530 MtrunA17_Chr7g0249311 40.566 106 55 2 180 281 392 493 1.57e-16 82.4
Msa0666530 MtrunA17_Chr7g0263531 50.000 236 90 6 181 392 190 421 1.11e-63 213
Msa0666530 MtrunA17_Chr5g0447701 41.538 260 126 5 177 424 89 334 1.36e-49 174
Msa0666530 MtrunA17_Chr3g0079691 66.187 139 38 4 270 406 436 567 1.32e-48 177
Msa0666530 MtrunA17_Chr3g0079691 35.628 247 112 9 40 244 102 343 2.41e-26 112
Msa0666530 MtrunA17_Chr3g0079691 44.444 108 47 3 168 266 474 577 1.16e-17 86.3
Msa0666530 MtrunA17_Chr3g0079691 56.667 60 25 1 332 391 280 338 1.11e-13 73.6
Msa0666530 MtrunA17_Chr7g0249301 79.268 82 17 0 313 394 273 354 8.98e-42 153
Msa0666530 MtrunA17_Chr7g0249301 61.765 68 25 1 177 244 59 125 1.68e-20 93.2
Msa0666530 MtrunA17_Chr7g0249301 55.000 60 27 0 180 239 292 351 1.49e-15 78.2
Msa0666530 MtrunA17_Chr7g0249301 61.905 63 19 3 331 391 61 120 5.96e-14 73.6
Msa0666530 MtrunA17_Chr5g0447711 34.914 232 144 3 172 403 77 301 5.52e-39 144
Msa0666530 MtrunA17_Chr4g0074001 33.840 263 151 5 154 394 160 421 2.59e-37 143
Msa0666530 MtrunA17_Chr1g0188941 65.823 79 27 0 313 391 32 110 1.00e-32 120
Msa0666530 MtrunA17_Chr1g0188941 53.333 60 28 0 180 239 51 110 3.34e-17 77.4
Msa0666530 MtrunA17_Chr8g0335811 61.842 76 29 0 313 388 135 210 2.80e-28 112
Msa0666530 MtrunA17_Chr8g0335811 54.386 57 26 0 180 236 154 210 5.22e-15 74.3
Msa0666530 MtrunA17_Chr4g0051881 64.865 74 26 0 318 391 164 237 1.65e-27 112
Msa0666530 MtrunA17_Chr4g0051881 46.667 90 46 1 166 255 164 251 2.84e-19 89.0
Msa0666530 MtrunA17_Chr1g0150801 61.842 76 28 1 313 388 84 158 4.99e-27 106
Msa0666530 MtrunA17_Chr1g0150801 53.448 58 27 0 180 237 102 159 1.46e-15 74.3
Msa0666530 MtrunA17_Chr8g0383251 37.267 161 94 2 239 392 8 168 2.22e-26 105
Msa0666530 MtrunA17_Chr8g0383251 37.255 102 61 1 138 239 69 167 2.94e-16 77.0
Msa0666530 MtrunA17_Chr3g0129361 59.459 74 30 0 315 388 127 200 3.07e-26 106
Msa0666530 MtrunA17_Chr3g0129361 50.877 57 28 0 180 236 144 200 1.23e-14 73.2
Msa0666530 MtrunA17_Chr8g0386241 49.515 103 50 1 308 410 79 179 7.57e-26 103
Msa0666530 MtrunA17_Chr8g0386241 50.769 65 32 0 173 237 96 160 1.02e-15 75.5
Msa0666530 MtrunA17_Chr7g0270191 47.414 116 51 2 316 431 129 234 8.71e-26 107
Msa0666530 MtrunA17_Chr7g0270191 39.062 128 77 1 139 265 104 231 5.74e-21 93.2
Msa0666530 MtrunA17_Chr5g0443131 62.162 74 28 0 318 391 143 216 1.45e-25 106
Msa0666530 MtrunA17_Chr5g0443131 55.224 67 30 0 180 246 157 223 2.20e-17 82.8
Msa0666530 MtrunA17_Chr2g0294231 60.526 76 30 0 316 391 187 262 1.52e-25 108
Msa0666530 MtrunA17_Chr2g0294231 46.154 91 47 1 166 256 189 277 4.62e-20 92.0
Msa0666530 MtrunA17_Chr8g0383351 58.667 75 30 1 315 388 142 216 5.81e-25 103
Msa0666530 MtrunA17_Chr8g0383351 50.877 57 28 0 180 236 160 216 8.19e-15 73.9
Msa0666530 MtrunA17_Chr1g0194481 57.895 76 32 0 316 391 142 217 9.92e-25 104
Msa0666530 MtrunA17_Chr1g0194481 51.316 76 37 0 180 255 158 233 1.63e-19 89.4
Msa0666530 MtrunA17_Chr7g0224801 63.235 68 25 0 323 390 84 151 1.19e-24 100
Msa0666530 MtrunA17_Chr7g0224801 43.373 83 44 1 169 251 82 161 7.15e-16 75.5
Msa0666530 MtrunA17_Chr5g0418781 56.962 79 34 0 310 388 102 180 1.37e-24 103
Msa0666530 MtrunA17_Chr5g0418781 61.404 57 22 0 180 236 124 180 1.27e-16 80.1
Msa0666530 MtrunA17_Chr3g0129321 54.667 75 34 0 318 392 104 178 4.56e-23 97.1
Msa0666530 MtrunA17_Chr3g0129321 45.946 74 40 0 166 239 104 177 3.45e-16 77.4
Msa0666530 MtrunA17_Chr4g0051181 51.899 79 37 1 316 393 227 305 5.90e-23 101
Msa0666530 MtrunA17_Chr3g0099641 51.282 78 37 1 315 391 234 311 7.39e-23 101
Msa0666530 MtrunA17_Chr3g0099641 37.079 89 53 2 163 248 232 320 1.53e-13 72.8
Msa0666530 MtrunA17_Chr7g0270831 53.247 77 35 1 316 391 200 276 7.80e-23 100
Msa0666530 MtrunA17_Chr7g0270831 38.384 99 56 3 155 248 187 285 4.96e-15 77.0
Msa0666530 MtrunA17_Chr2g0288871 51.899 79 37 1 314 391 287 365 8.57e-23 101
Msa0666530 MtrunA17_Chr2g0288871 40.000 85 48 2 158 239 281 365 2.00e-15 79.0
Msa0666530 MtrunA17_Chr4g0075201 51.899 79 37 1 314 391 249 327 1.29e-22 100
Msa0666530 MtrunA17_Chr4g0075201 37.647 85 50 2 158 239 243 327 3.68e-14 74.7
Msa0666530 MtrunA17_Chr4g0060271 50.633 79 38 1 315 392 238 316 2.67e-22 100
Msa0666530 MtrunA17_Chr4g0060271 48.333 60 30 1 181 239 256 315 6.38e-13 71.2
Msa0666530 MtrunA17_Chr2g0322391 51.899 79 37 1 314 391 331 409 2.70e-22 100
Msa0666530 MtrunA17_Chr2g0322391 35.955 89 54 2 154 239 321 409 2.00e-12 69.7
Msa0666530 MtrunA17_Chr7g0248721 59.211 76 30 1 313 388 122 196 3.36e-22 94.7
Msa0666530 MtrunA17_Chr7g0248721 46.667 75 39 1 163 237 124 197 6.32e-15 73.9
Msa0666530 MtrunA17_Chr4g0068541 53.247 77 36 0 316 392 192 268 9.86e-22 97.4
Msa0666530 MtrunA17_Chr4g0068541 50.000 76 37 1 180 255 208 282 1.14e-15 79.0
Msa0666530 MtrunA17_Chr5g0432071 47.059 102 51 3 175 274 99 199 2.55e-21 92.0
Msa0666530 MtrunA17_Chr5g0432071 53.333 60 27 1 332 391 104 162 2.32e-13 69.3
Msa0666530 MtrunA17_Chr1g0189391 46.667 105 54 2 286 388 50 154 3.06e-21 94.7
Msa0666530 MtrunA17_Chr1g0189391 50.000 58 28 1 180 236 97 154 4.97e-12 67.0
Msa0666530 MtrunA17_Chr2g0333851 42.373 118 52 4 309 421 144 250 8.54e-21 93.2
Msa0666530 MtrunA17_Chr2g0333851 42.857 91 47 2 180 265 169 259 4.28e-16 79.3
Msa0666530 MtrunA17_Chr1g0147881 53.165 79 33 2 313 390 246 321 1.09e-20 93.2
Msa0666530 MtrunA17_Chr1g0147881 50.877 57 27 1 181 236 263 319 7.52e-12 66.6
Msa0666530 MtrunA17_Chr4g0053281 50.633 79 35 2 313 390 250 325 1.21e-20 93.2
Msa0666530 MtrunA17_Chr4g0053281 52.632 57 26 1 181 236 267 323 3.68e-14 73.6
Msa0666530 MtrunA17_Chr2g0302391 42.105 133 64 6 311 441 193 314 2.30e-20 93.2
Msa0666530 MtrunA17_Chr2g0302391 42.647 68 38 1 181 247 212 279 8.79e-12 67.0
Msa0666530 MtrunA17_Chr6g0485431 52.632 76 35 1 318 392 140 215 2.86e-20 92.4
Msa0666530 MtrunA17_Chr6g0485431 47.692 65 33 1 181 244 155 219 8.09e-15 75.9
Msa0666530 MtrunA17_Chr7g0216891 49.351 77 38 1 315 390 202 278 4.12e-20 93.6
Msa0666530 MtrunA17_Chr7g0216891 51.724 58 27 1 181 237 220 277 6.28e-14 74.3
Msa0666530 MtrunA17_Chr4g0025061 49.367 79 39 1 314 391 342 420 4.49e-20 93.6
Msa0666530 MtrunA17_Chr4g0025061 42.667 75 38 2 177 246 353 427 6.67e-12 67.8
Msa0666530 MtrunA17_Chr5g0401821 50.617 81 39 1 313 392 180 260 6.08e-20 89.7
Msa0666530 MtrunA17_Chr5g0401821 52.632 57 26 1 181 236 200 256 1.68e-13 70.9
Msa0666530 MtrunA17_Chr4g0025051 51.351 74 35 1 319 391 322 395 8.12e-19 89.4
Msa0666530 MtrunA17_Chr4g0025051 34.066 91 59 1 159 248 314 404 4.67e-11 65.1
Msa0666530 MtrunA17_Chr3g0136961 35.570 149 73 4 258 388 52 195 8.50e-19 86.7
Msa0666530 MtrunA17_Chr3g0136961 48.276 58 29 1 180 236 138 195 1.21e-13 71.6
Msa0666530 MtrunA17_Chr4g0001361 42.718 103 44 3 330 423 160 256 5.24e-18 84.7
Msa0666530 MtrunA17_Chr4g0001361 38.000 100 60 2 180 277 162 261 1.10e-15 78.2
Msa0666530 MtrunA17_Chr4g0071521 49.351 77 35 2 313 388 229 302 8.13e-18 84.3
Msa0666530 MtrunA17_Chr4g0071521 47.368 57 29 1 181 236 246 302 7.97e-11 63.2
Msa0666530 MtrunA17_Chr1g0184691 49.351 77 35 2 313 388 277 350 1.30e-17 84.3
Msa0666530 MtrunA17_Chr1g0184691 41.667 84 45 2 156 238 272 352 1.63e-13 72.0
Msa0666530 MtrunA17_Chr7g0238921 59.649 57 23 0 332 388 124 180 1.80e-17 83.2
Msa0666530 MtrunA17_Chr7g0238921 61.404 57 22 0 180 236 124 180 1.97e-17 83.2
Msa0666530 MtrunA17_Chr1g0150281 41.304 92 48 3 303 388 106 197 2.22e-16 79.7
Msa0666530 MtrunA17_Chr1g0150281 47.368 57 29 1 181 236 141 197 9.31e-13 68.9
Msa0666530 MtrunA17_Chr1g0150271 41.758 91 52 1 320 409 89 179 2.45e-16 79.0
Msa0666530 MtrunA17_Chr1g0150271 44.262 61 33 1 180 239 101 161 1.03e-11 65.1
Msa0666530 MtrunA17_Chr1g0202461 36.538 104 64 2 313 415 243 345 1.91e-15 78.2
Msa0666530 MtrunA17_Chr1g0202461 40.000 75 44 1 181 254 262 336 8.81e-12 66.6
Msa0666530 MtrunA17_Chr7g0270051 50.000 62 30 1 333 393 54 115 3.99e-15 75.5
Msa0666530 MtrunA17_Chr7g0270051 47.436 78 38 2 181 257 54 129 2.91e-14 72.8
Msa0666530 MtrunA17_Chr3g0139021 43.590 78 43 1 313 389 295 372 4.63e-15 77.0
Msa0666530 MtrunA17_Chr8g0379461 44.444 72 39 1 333 403 77 148 5.62e-15 74.7
Msa0666530 MtrunA17_Chr8g0379461 38.824 85 51 1 156 239 52 136 4.86e-11 63.2
Msa0666530 MtrunA17_Chr4g0024391 42.500 80 43 2 314 392 211 288 7.12e-15 77.0
Msa0666530 MtrunA17_Chr7g0228941 45.455 77 39 2 313 388 35 109 1.73e-14 70.1
Msa0666530 MtrunA17_Chr7g0228941 39.744 78 43 2 160 236 35 109 1.90e-11 61.6
Msa0666530 MtrunA17_Chr8g0387501 36.364 99 62 1 331 428 128 226 1.96e-14 73.6
Msa0666530 MtrunA17_Chr8g0387501 36.735 98 59 2 181 277 130 225 1.48e-12 68.2
Msa0666530 MtrunA17_Chr2g0319961 47.826 69 35 1 333 400 81 149 2.51e-14 73.2
Msa0666530 MtrunA17_Chr8g0348311 42.391 92 41 3 333 423 156 236 2.90e-14 73.9
Msa0666530 MtrunA17_Chr8g0348311 41.791 67 38 1 174 239 149 215 4.45e-11 64.3
Msa0666530 MtrunA17_Chr2g0293481 41.860 86 48 2 325 409 261 345 4.38e-14 74.3
Msa0666530 MtrunA17_Chr2g0293481 34.167 120 74 3 130 246 215 332 1.15e-12 70.1
Msa0666530 MtrunA17_Chr2g0289181 48.485 66 33 1 327 391 9 74 8.09e-14 70.9
Msa0666530 MtrunA17_Chr2g0289181 46.154 65 34 1 180 243 14 78 8.86e-12 65.1
Msa0666530 MtrunA17_Chr2g0284321 49.206 63 31 1 333 394 36 98 1.70e-13 69.7
Msa0666530 MtrunA17_Chr7g0248691 51.667 60 28 1 333 391 155 214 2.35e-13 71.2
Msa0666530 MtrunA17_Chr6g0468181 64.151 53 18 1 196 248 18 69 4.97e-13 65.9
Msa0666530 MtrunA17_Chr1g0188971 62.500 40 15 0 313 352 43 82 4.12e-12 62.0
Msa0666530 MtrunA17_Chr3g0126391 40.789 76 40 2 331 403 132 205 5.00e-12 67.0
Msa0666530 MtrunA17_Chr3g0126391 48.276 58 27 2 180 234 133 190 2.97e-11 64.7
Msa0666530 MtrunA17_Chr4g0009881 48.611 72 34 3 169 240 7 75 5.48e-12 62.8
Msa0666530 MtrunA17_Chr1g0188961 70.000 40 12 0 352 391 3 42 1.33e-11 60.1
Msa0666530 MtrunA17_Chr8g0387981 50.000 58 26 1 180 234 132 189 1.39e-11 65.9
Msa0666530 MtrunA17_Chr8g0387981 48.276 58 27 1 332 386 132 189 6.02e-11 63.9
Msa0666530 MtrunA17_Chr8g0347251 36.782 87 47 2 156 234 107 193 3.39e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0666530 AT2G38470.1 46.667 435 167 16 57 456 64 468 4.95e-96 300
Msa0666530 AT5G07100.1 46.667 345 108 9 50 394 28 296 2.03e-85 266
Msa0666530 AT5G07100.1 40.426 94 45 1 318 400 92 185 2.51e-14 74.3
Msa0666530 AT1G13960.1 43.733 375 153 9 48 391 121 468 9.07e-81 260
Msa0666530 AT5G07100.2 60.092 218 52 4 177 394 21 203 7.42e-80 248
Msa0666530 AT5G07100.2 49.275 69 35 0 332 400 24 92 1.53e-13 70.1
Msa0666530 AT5G07100.4 60.092 218 52 4 177 394 21 203 7.42e-80 248
Msa0666530 AT5G07100.4 49.275 69 35 0 332 400 24 92 1.53e-13 70.1
Msa0666530 AT5G07100.5 60.092 218 52 4 177 394 21 203 7.42e-80 248
Msa0666530 AT5G07100.5 49.275 69 35 0 332 400 24 92 1.53e-13 70.1
Msa0666530 AT5G07100.3 60.092 218 52 4 177 394 21 203 7.42e-80 248
Msa0666530 AT5G07100.3 49.275 69 35 0 332 400 24 92 1.53e-13 70.1
Msa0666530 AT4G26640.7 41.935 403 178 13 53 404 16 413 6.56e-78 253
Msa0666530 AT4G26640.2 41.646 401 182 12 53 404 56 453 1.66e-77 253
Msa0666530 AT1G13960.2 55.102 245 78 5 177 391 73 315 8.41e-77 245
Msa0666530 AT4G26640.5 54.098 244 92 5 180 404 35 277 1.89e-76 245
Msa0666530 AT4G26640.5 54.839 62 27 1 330 391 33 93 4.12e-13 71.2
Msa0666530 AT4G26640.6 54.098 244 92 5 180 404 35 277 1.89e-76 245
Msa0666530 AT4G26640.6 54.839 62 27 1 330 391 33 93 4.12e-13 71.2
Msa0666530 AT4G26640.4 54.098 244 92 5 180 404 35 277 1.89e-76 245
Msa0666530 AT4G26640.4 54.839 62 27 1 330 391 33 93 4.12e-13 71.2
Msa0666530 AT4G26640.3 54.098 244 92 5 180 404 35 277 1.89e-76 245
Msa0666530 AT4G26640.3 54.839 62 27 1 330 391 33 93 4.12e-13 71.2
Msa0666530 AT2G03340.1 43.011 372 169 11 48 394 124 477 2.35e-76 249
Msa0666530 AT4G26640.1 54.098 244 92 5 180 404 139 381 5.66e-76 247
Msa0666530 AT4G26640.1 54.839 62 27 1 330 391 137 197 3.58e-13 72.0
Msa0666530 AT2G30250.1 54.825 228 79 5 181 391 167 387 1.43e-71 233
Msa0666530 AT2G30250.1 56.250 64 28 0 181 244 329 392 1.50e-16 82.0
Msa0666530 AT3G01080.2 55.349 215 83 5 177 391 202 403 2.21e-66 221
Msa0666530 AT3G01080.1 55.349 215 83 5 177 391 164 365 3.67e-66 219
Msa0666530 AT4G26440.1 36.659 431 188 12 55 437 88 481 7.72e-65 220
Msa0666530 AT2G37260.3 42.751 269 118 3 177 411 82 348 1.58e-54 186
Msa0666530 AT2G37260.2 42.751 269 118 3 177 411 80 346 1.72e-54 186
Msa0666530 AT2G04880.2 43.775 249 112 7 172 397 105 348 2.64e-54 189
Msa0666530 AT2G37260.1 42.751 269 118 3 177 411 162 428 7.03e-54 187
Msa0666530 AT2G04880.1 40.860 279 101 9 172 397 105 372 2.09e-51 182
Msa0666530 AT4G30935.1 41.016 256 128 8 154 392 142 391 1.72e-46 168
Msa0666530 AT4G30935.1 50.000 64 32 0 181 244 332 395 2.18e-15 79.0
Msa0666530 AT5G56270.1 75.728 103 22 1 292 394 450 549 4.68e-45 168
Msa0666530 AT5G56270.1 34.874 238 120 10 40 244 101 336 5.80e-23 102
Msa0666530 AT5G56270.1 56.452 62 27 0 180 241 487 548 1.14e-16 83.6
Msa0666530 AT5G56270.1 55.738 61 24 2 332 391 273 331 7.93e-13 71.2
Msa0666530 AT4G12020.6 44.059 202 82 4 177 352 465 661 6.95e-36 142
Msa0666530 AT4G12020.6 49.180 61 30 1 331 391 467 526 8.11e-11 65.5
Msa0666530 AT4G12020.8 44.059 202 82 4 177 352 465 661 6.95e-36 142
Msa0666530 AT4G12020.8 49.180 61 30 1 331 391 467 526 8.11e-11 65.5
Msa0666530 AT4G12020.3 44.059 202 82 4 177 352 465 661 7.14e-36 142
Msa0666530 AT4G12020.3 49.180 61 30 1 331 391 467 526 8.33e-11 65.5
Msa0666530 AT4G12020.10 44.059 202 82 4 177 352 465 661 7.46e-36 142
Msa0666530 AT4G12020.10 49.180 61 30 1 331 391 467 526 8.18e-11 65.5
Msa0666530 AT4G12020.2 44.059 202 82 4 177 352 465 661 8.37e-36 142
Msa0666530 AT4G12020.2 49.180 61 30 1 331 391 467 526 8.71e-11 65.5
Msa0666530 AT4G12020.7 44.059 202 82 4 177 352 465 661 9.55e-36 142
Msa0666530 AT4G12020.7 49.180 61 30 1 331 391 467 526 8.63e-11 65.5
Msa0666530 AT4G12020.1 44.059 202 82 4 177 352 465 661 9.74e-36 142
Msa0666530 AT4G12020.1 49.180 61 30 1 331 391 467 526 8.71e-11 65.5
Msa0666530 AT4G12020.9 44.059 202 82 4 177 352 465 661 9.74e-36 142
Msa0666530 AT4G12020.9 49.180 61 30 1 331 391 467 526 8.71e-11 65.5
Msa0666530 AT4G12020.5 44.059 202 82 4 177 352 398 594 1.01e-35 142
Msa0666530 AT4G12020.5 49.180 61 30 1 331 391 400 459 9.43e-11 65.1
Msa0666530 AT4G12020.4 44.059 202 82 4 177 352 465 661 1.06e-35 142
Msa0666530 AT4G12020.4 49.180 61 30 1 331 391 467 526 8.93e-11 65.1
Msa0666530 AT4G12020.11 44.059 202 82 4 177 352 465 661 1.25e-35 142
Msa0666530 AT2G44745.1 47.748 111 57 1 278 388 92 201 1.85e-28 112
Msa0666530 AT2G44745.1 54.386 57 26 0 180 236 145 201 6.02e-15 74.3
Msa0666530 AT4G18170.1 63.158 76 28 0 316 391 156 231 1.19e-27 113
Msa0666530 AT4G18170.1 47.126 87 46 0 153 239 145 231 1.09e-18 87.4
Msa0666530 AT1G29860.1 64.474 76 27 0 316 391 120 195 2.82e-27 111
Msa0666530 AT1G29860.1 52.778 72 34 0 180 251 136 207 7.44e-20 90.1
Msa0666530 AT4G39410.1 61.842 76 29 0 313 388 204 279 9.10e-27 110
Msa0666530 AT4G39410.1 44.872 78 42 1 180 256 223 300 1.23e-15 78.2
Msa0666530 AT1G55600.1 60.494 81 32 0 311 391 286 366 1.25e-26 113
Msa0666530 AT1G55600.1 54.054 74 30 1 172 241 295 368 2.43e-18 88.2
Msa0666530 AT5G46350.1 59.740 77 31 0 318 394 169 245 4.08e-26 108
Msa0666530 AT5G46350.1 50.000 80 38 1 166 245 169 246 6.89e-18 85.1
Msa0666530 AT5G26170.1 60.000 70 28 0 319 388 100 169 1.13e-25 103
Msa0666530 AT5G26170.1 46.377 69 37 0 168 236 101 169 6.95e-16 75.9
Msa0666530 AT2G47260.1 50.000 106 49 2 316 417 158 263 2.45e-25 107
Msa0666530 AT2G47260.1 53.125 64 30 0 180 243 174 237 5.86e-16 79.3
Msa0666530 AT5G49520.1 59.740 77 31 0 316 392 205 281 3.29e-25 107
Msa0666530 AT5G49520.1 56.250 64 28 0 180 243 221 284 6.12e-18 86.3
Msa0666530 AT5G13080.1 49.000 100 43 1 299 390 26 125 3.48e-25 101
Msa0666530 AT5G13080.1 43.373 83 44 1 169 251 56 135 1.26e-15 74.3
Msa0666530 AT3G01970.1 62.500 72 27 0 319 390 52 123 3.90e-25 101
Msa0666530 AT3G01970.1 47.059 68 36 0 169 236 54 121 1.10e-14 71.6
Msa0666530 AT5G41570.1 57.895 76 32 0 313 388 79 154 4.49e-25 102
Msa0666530 AT5G41570.1 46.575 73 39 0 165 237 83 155 6.00e-17 79.3
Msa0666530 AT1G64000.1 55.696 79 35 0 310 388 92 170 7.66e-25 102
Msa0666530 AT1G64000.1 53.448 58 27 0 180 237 114 171 3.36e-16 77.4
Msa0666530 AT1G69310.4 57.895 76 32 0 313 388 128 203 1.00e-24 104
Msa0666530 AT1G69310.4 49.383 81 41 0 156 236 123 203 5.79e-18 84.7
Msa0666530 AT1G69310.2 57.895 76 32 0 313 388 128 203 1.00e-24 104
Msa0666530 AT1G69310.2 49.383 81 41 0 156 236 123 203 5.79e-18 84.7
Msa0666530 AT1G69310.1 57.895 76 32 0 313 388 128 203 1.00e-24 104
Msa0666530 AT1G69310.1 49.383 81 41 0 156 236 123 203 5.79e-18 84.7
Msa0666530 AT5G64810.1 59.155 71 29 0 319 389 97 167 2.70e-24 100
Msa0666530 AT5G64810.1 41.463 82 48 0 155 236 85 166 2.93e-15 74.7
Msa0666530 AT4G04450.2 42.188 128 65 3 314 440 180 299 9.30e-24 103
Msa0666530 AT4G04450.2 38.824 85 49 2 158 239 174 258 1.36e-14 76.3
Msa0666530 AT4G04450.1 42.188 128 65 3 314 440 274 393 3.28e-23 103
Msa0666530 AT4G04450.1 38.824 85 49 2 158 239 268 352 2.38e-14 75.9
Msa0666530 AT5G15130.2 51.899 79 37 1 315 392 168 246 3.76e-23 102
Msa0666530 AT5G15130.2 38.889 90 52 2 153 239 156 245 1.47e-12 70.1
Msa0666530 AT5G15130.1 51.899 79 37 1 315 392 210 288 4.76e-23 102
Msa0666530 AT5G15130.1 38.889 90 52 2 153 239 198 287 1.70e-12 70.1
Msa0666530 AT2G46130.1 56.579 76 33 0 313 388 11 86 5.15e-23 94.0
Msa0666530 AT2G46130.1 55.172 58 26 0 180 237 30 87 3.10e-17 77.8
Msa0666530 AT1G68150.1 51.899 79 37 1 316 393 219 297 7.24e-23 100
Msa0666530 AT1G68150.1 51.667 60 28 1 181 239 236 295 1.69e-14 75.5
Msa0666530 AT1G62300.1 53.165 79 36 1 314 391 294 372 8.53e-23 102
Msa0666530 AT1G62300.1 38.202 89 52 2 154 239 284 372 4.32e-14 75.1
Msa0666530 AT4G22070.4 53.165 79 36 1 314 391 279 357 1.16e-22 101
Msa0666530 AT4G22070.4 37.647 85 50 2 158 239 273 357 7.01e-13 71.2
Msa0666530 AT4G22070.3 53.165 79 36 1 314 391 279 357 1.16e-22 101
Msa0666530 AT4G22070.3 37.647 85 50 2 158 239 273 357 7.01e-13 71.2
Msa0666530 AT4G22070.2 53.165 79 36 1 314 391 279 357 1.16e-22 101
Msa0666530 AT4G22070.2 37.647 85 50 2 158 239 273 357 7.01e-13 71.2
Msa0666530 AT4G22070.1 53.165 79 36 1 314 391 279 357 1.16e-22 101
Msa0666530 AT4G22070.1 37.647 85 50 2 158 239 273 357 7.01e-13 71.2
Msa0666530 AT1G18860.1 53.846 78 35 1 315 391 222 299 2.94e-22 100
Msa0666530 AT3G01080.3 67.188 64 20 1 177 240 202 264 5.06e-22 97.4
Msa0666530 AT3G01080.3 53.968 63 28 1 332 394 205 266 1.77e-13 72.0
Msa0666530 AT3G62340.1 57.143 77 33 0 316 392 102 178 1.37e-21 95.1
Msa0666530 AT3G62340.1 43.820 89 50 0 160 248 98 186 3.34e-18 85.1
Msa0666530 AT4G31550.1 50.538 93 41 3 313 403 230 319 7.31e-21 94.0
Msa0666530 AT4G31550.1 52.632 57 26 1 181 236 247 303 8.25e-13 69.7
Msa0666530 AT4G31550.2 50.538 93 41 3 313 403 229 318 8.00e-21 93.6
Msa0666530 AT4G31550.2 52.632 57 26 1 181 236 246 302 8.64e-13 69.7
Msa0666530 AT4G01720.1 50.649 77 37 1 316 391 223 299 2.74e-20 94.0
Msa0666530 AT4G01720.1 41.304 92 47 4 155 239 208 299 3.80e-14 75.1
Msa0666530 AT2G23320.1 49.367 79 36 2 313 390 224 299 3.91e-20 91.7
Msa0666530 AT2G23320.1 50.877 57 27 1 181 236 241 297 5.34e-13 70.5
Msa0666530 AT1G69310.3 53.947 76 31 1 313 388 128 199 5.26e-20 90.5
Msa0666530 AT1G69310.3 45.679 81 40 1 156 236 123 199 2.22e-13 70.9
Msa0666530 AT4G24240.1 53.333 75 34 1 319 392 268 342 5.70e-20 91.7
Msa0666530 AT1G80840.1 39.831 118 55 3 330 431 144 261 1.65e-19 89.4
Msa0666530 AT1G80840.1 50.820 61 29 1 180 239 146 206 1.13e-15 78.2
Msa0666530 AT2G24570.1 54.545 77 31 2 313 388 227 300 2.53e-19 89.4
Msa0666530 AT2G24570.1 52.632 57 26 1 181 236 244 300 1.13e-12 69.3
Msa0666530 AT5G43290.1 63.158 57 21 0 180 236 114 170 7.05e-19 87.0
Msa0666530 AT5G43290.1 55.932 59 26 0 330 388 112 170 1.80e-15 77.0
Msa0666530 AT5G28650.1 50.649 77 34 2 313 388 246 319 8.42e-19 87.8
Msa0666530 AT5G28650.1 47.368 57 29 1 181 236 263 319 2.77e-11 65.1
Msa0666530 AT2G46130.2 52.632 76 32 1 313 388 11 82 2.13e-18 80.9
Msa0666530 AT2G46130.2 50.000 58 25 1 180 237 30 83 1.01e-12 64.7
Msa0666530 AT3G04670.1 50.649 77 34 2 313 388 246 319 2.29e-18 86.7
Msa0666530 AT3G04670.1 49.123 57 28 1 181 236 263 319 5.87e-12 67.4
Msa0666530 AT2G21900.1 50.000 74 34 1 321 391 95 168 2.31e-18 84.0
Msa0666530 AT2G21900.1 39.773 88 45 1 152 239 89 168 1.20e-16 79.0
Msa0666530 AT2G30590.1 36.000 150 81 4 254 388 221 370 3.19e-18 86.7
Msa0666530 AT2G30590.1 41.667 84 45 2 156 238 292 372 3.22e-13 71.6
Msa0666530 AT4G23550.1 43.678 87 48 1 321 406 129 215 2.54e-17 83.2
Msa0666530 AT1G69810.2 35.659 129 67 3 280 392 79 207 2.99e-17 83.2
Msa0666530 AT1G69810.1 35.659 129 67 3 280 392 137 265 4.67e-17 83.6
Msa0666530 AT2G25000.2 48.387 62 31 1 331 391 102 163 2.92e-16 78.6
Msa0666530 AT2G25000.2 43.284 67 37 1 180 245 103 169 1.83e-13 70.5
Msa0666530 AT2G25000.4 48.387 62 31 1 331 391 102 163 2.92e-16 78.6
Msa0666530 AT2G25000.4 43.284 67 37 1 180 245 103 169 1.83e-13 70.5
Msa0666530 AT2G25000.3 48.387 62 31 1 331 391 124 185 4.74e-16 78.2
Msa0666530 AT2G25000.3 43.284 67 37 1 180 245 125 191 2.49e-13 70.5
Msa0666530 AT4G31800.2 48.387 62 31 1 331 391 110 171 6.37e-16 77.8
Msa0666530 AT4G31800.2 42.254 71 40 1 180 249 111 181 6.69e-14 72.0
Msa0666530 AT2G25000.1 48.387 62 31 1 331 391 145 206 7.54e-16 78.2
Msa0666530 AT2G25000.1 43.284 67 37 1 180 245 146 212 4.32e-13 70.1
Msa0666530 AT4G31800.1 48.387 62 31 1 331 391 175 236 9.37e-16 78.6
Msa0666530 AT4G31800.1 42.254 71 40 1 180 249 176 246 1.02e-13 72.4
Msa0666530 AT5G52830.1 39.796 98 57 2 313 409 147 243 3.24e-15 77.4
Msa0666530 AT5G52830.1 48.333 60 30 1 181 239 166 225 2.29e-11 65.9
Msa0666530 AT1G29280.1 50.820 61 29 1 333 392 75 135 5.15e-15 75.5
Msa0666530 AT1G29280.1 46.970 66 34 1 181 245 75 140 3.53e-13 70.1
Msa0666530 AT4G01250.1 52.381 63 29 1 333 394 129 191 6.35e-15 75.9
Msa0666530 AT4G01250.1 43.421 76 41 2 181 255 129 203 3.56e-12 67.8
Msa0666530 AT1G30650.1 40.741 81 47 1 315 394 200 280 7.52e-14 73.9
Msa0666530 AT1G30650.1 50.000 60 29 1 181 239 218 277 1.07e-11 67.0
Msa0666530 AT2G34830.1 40.741 81 47 1 315 394 198 278 7.91e-14 73.9
Msa0666530 AT2G34830.1 49.254 67 31 2 181 246 216 280 2.43e-12 69.3
Msa0666530 AT2G34830.2 40.741 81 47 1 315 394 207 287 8.06e-14 73.9
Msa0666530 AT2G34830.2 49.254 67 31 2 181 246 225 289 2.53e-12 69.3
Msa0666530 AT3G58710.1 41.667 84 42 2 323 405 62 139 6.05e-13 69.7
Msa0666530 AT3G58710.1 48.333 60 30 1 181 239 72 131 6.70e-11 63.5
Msa0666530 AT3G58710.2 41.667 84 42 2 323 405 61 138 6.21e-13 69.3
Msa0666530 AT3G58710.2 48.333 60 30 1 181 239 71 130 6.76e-11 63.5
Msa0666530 AT5G45260.1 42.683 82 42 2 179 257 1207 1286 6.06e-12 68.9
Msa0666530 AT5G45050.2 44.186 86 34 3 316 394 1137 1215 6.98e-12 68.6
Msa0666530 AT5G45050.1 44.186 86 34 3 316 394 1165 1243 7.19e-12 68.6
Msa0666530 AT5G45050.4 44.186 86 34 3 316 394 1026 1104 7.32e-12 68.6
Msa0666530 AT5G24110.1 31.915 141 89 4 319 453 99 238 9.34e-12 66.2

Find 71 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGGCTTCTGATCTTTCTT+TGG 0.174215 4_4:-6561139 Msa0666530:CDS
TTCTTCTTCATTGAGCAAAT+TGG 0.201399 4_4:+6561300 None:intergenic
GTGCACTTGTAATAACTTCT+TGG 0.242130 4_4:+6561327 None:intergenic
TGGAGGAGATTATGATGATT+TGG 0.259847 4_4:-6561076 Msa0666530:CDS
GAAGAAAGTTGAAAGGTCTT+TGG 0.287157 4_4:-6561283 Msa0666530:CDS
GGAGGAGATTATGATGATTT+GGG 0.288731 4_4:-6561075 Msa0666530:CDS
GTACTGATCTTACCATCTTT+TGG 0.288931 4_4:+6561044 None:intergenic
ATGGCTTCTGATCTTTCTTT+GGG 0.307243 4_4:-6561138 Msa0666530:CDS
TTATTTGCATACCTTGGGTT+TGG 0.317158 4_4:+6560657 None:intergenic
GGATATAGGTGGAGGAAATA+TGG 0.321679 4_4:-6560702 Msa0666530:CDS
TTCATCATGCAACAACTCTA+TGG 0.324697 4_4:-6561157 Msa0666530:CDS
GGATACAGGTGGAGAAAATA+TGG 0.326573 4_4:-6561378 Msa0666530:CDS
TATGGACAGAAAGTAGTTAA+AGG 0.332389 4_4:-6560684 Msa0666530:CDS
GTCACTGCTGAAGGCCTTAT+AGG 0.353697 4_4:+6560211 None:intergenic
AATGTGTCCTGTGTCTTTAG+TGG 0.354616 4_4:+6561537 None:intergenic
CTTATAGACATAGAAGCATT+AGG 0.359194 4_4:+6561426 None:intergenic
TATGCTGTTGATTGATGCTT+TGG 0.359996 4_4:+6562317 None:intergenic
TTGATGCTTTGGACAGTAGA+AGG 0.389799 4_4:+6562328 None:intergenic
ATTACTCAAATAGTATATAA+AGG 0.400287 4_4:-6561249 Msa0666530:CDS
TTCTGATCTTTCTTTGGGAG+AGG 0.403118 4_4:-6561133 Msa0666530:CDS
AGCCGAGTATTGTTCCGAAT+TGG 0.406866 4_4:+6560051 None:intergenic
ATATTCTTGATGATGGATAT+AGG 0.416334 4_4:-6560716 Msa0666530:CDS
AATTGGTTCAAATACCAATT+CGG 0.428619 4_4:-6560065 Msa0666530:CDS
CATGTAATGTTACACCTATA+AGG 0.432770 4_4:-6560225 Msa0666530:CDS
TTATGATGATTTGGGAATAG+AGG 0.442880 4_4:-6561067 Msa0666530:CDS
GCAGTAATCACAACATATGA+AGG 0.450008 4_4:-6560328 Msa0666530:CDS
GAAATTGATATTCTTGATGA+TGG 0.452886 4_4:-6560723 Msa0666530:CDS
GTTGAAAGGTCTTTGGATGA+TGG 0.456932 4_4:-6561276 Msa0666530:CDS
TGTAACATTACATGTATTGT+TGG 0.459718 4_4:+6560234 None:intergenic
TACATTAGAAGAAGAAAGAA+AGG 0.465181 4_4:+6562639 None:intergenic
TTAGAAGAAGAAAGAAAGGA+AGG 0.477240 4_4:+6562643 None:intergenic
AGAAGGGTGTAGAACTGTTA+AGG 0.478856 4_4:-6560775 Msa0666530:CDS
TGTGATGTTATTGTTTGTGT+TGG 0.478952 4_4:+6562810 None:intergenic
CAAAGAAAATCAGAAGAAGA+TGG 0.492604 4_4:-6561399 Msa0666530:CDS
AATCAGAAGAAGATGGATAC+AGG 0.502233 4_4:-6561392 Msa0666530:CDS
TTGAAAGGTCTTTGGATGAT+GGG 0.504431 4_4:-6561275 Msa0666530:CDS
AACAAATTTAGTAATATCCA+AGG 0.506297 4_4:+6562786 None:intergenic
GGTGGAAAATCAGAATAAGA+AGG 0.506570 4_4:+6562697 None:intergenic
GTAGTTTGAACCACAACTCT+AGG 0.508298 4_4:+6560750 None:intergenic
GGTGAATTCAATAACTCTGA+TGG 0.513179 4_4:+6562664 None:intergenic
TACCAATTCGGAACAATACT+CGG 0.514905 4_4:-6560053 Msa0666530:CDS
AAACAATAACATCACAACCT+TGG 0.515667 4_4:-6562803 Msa0666530:CDS
GGCTCATTTGTATAAGATGA+AGG 0.527740 4_4:+6562349 None:intergenic
AACTCTGATGGGCTGAAACC+AGG 0.529891 4_4:+6562676 None:intergenic
CTCTTCCTAGAGGTACATCA+TGG 0.532042 4_4:+6560296 None:intergenic
AGCTACTCTTATTCCACAGA+AGG 0.544022 4_4:-6560792 Msa0666530:CDS
TTCCACAAGCATGTTTCAAG+TGG 0.546004 4_4:-6562215 Msa0666530:intron
GTGAATTCAATAACTCTGAT+GGG 0.548615 4_4:+6562665 None:intergenic
TTGTACACTGAGGCTTAGGA+TGG 0.563371 4_4:+6561217 None:intergenic
GAATAGTTAGTCACTGCTGA+AGG 0.564525 4_4:+6560202 None:intergenic
CATGATGTACCTCTAGGAAG+AGG 0.569832 4_4:-6560295 Msa0666530:CDS
TATGGAGAGAAACAAGTGAA+AGG 0.574260 4_4:-6561360 Msa0666530:CDS
TACCACTTGAAACATGCTTG+TGG 0.577939 4_4:+6562213 None:intergenic
GTGGAAAATCAGAATAAGAA+GGG 0.578293 4_4:+6562698 None:intergenic
TTGATGATGGATATAGGTGG+AGG 0.585484 4_4:-6560710 Msa0666530:CDS
TGGGAATAGAGGCCAAAAGA+TGG 0.587508 4_4:-6561056 Msa0666530:intron
AACAGTTCTACACCCTTCTG+TGG 0.594037 4_4:+6560779 None:intergenic
TACTACAAATGTGTAATCCA+AGG 0.596332 4_4:-6560397 Msa0666530:CDS
CATAACCATGATGTACCTCT+AGG 0.598674 4_4:-6560301 Msa0666530:CDS
CATCAATCAACAGCATAGCA+AGG 0.616759 4_4:-6562311 Msa0666530:CDS
CAGTAATCACAACATATGAA+GGG 0.624707 4_4:-6560327 Msa0666530:CDS
GGAAGAACCACTAAAGACAC+AGG 0.628554 4_4:-6561544 Msa0666530:CDS
GCTACTCTTATTCCACAGAA+GGG 0.633228 4_4:-6560791 Msa0666530:CDS
CAATGAAGAAGAAAGTTGAA+AGG 0.635399 4_4:-6561290 Msa0666530:CDS
TTAAAGGAAATCCAAACCCA+AGG 0.636841 4_4:-6560668 Msa0666530:intron
TGTTAAGGAACCTAGAGTTG+TGG 0.637272 4_4:-6560760 Msa0666530:CDS
CTTGAAATTCCTCTTCCTAG+AGG 0.637467 4_4:+6560286 None:intergenic
CAGAAGAAGATGGATACAGG+TGG 0.640643 4_4:-6561389 Msa0666530:CDS
GAGTTGTTGCATGATGAAGA+AGG 0.644778 4_4:+6561162 None:intergenic
TTCTTGATGATGGATATAGG+TGG 0.671599 4_4:-6560713 Msa0666530:CDS
TCTGATGGGCTGAAACCAGG+TGG 0.672247 4_4:+6562679 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATATTCATTCAATAAA+TGG - chr4_4:6561857-6561876 Msa0666530:intron 10.0%
!! TAAATGATATAATATACTAA+CGG - chr4_4:6562266-6562285 Msa0666530:CDS 10.0%
!!! CATATTTTATCACAATATAA+AGG + chr4_4:6560339-6560358 None:intergenic 15.0%
!!! TTTGTTTTAAGTAAAAGTTA+TGG + chr4_4:6560675-6560694 None:intergenic 15.0%
!! TTTCATTAATGATAATATGT+TGG - chr4_4:6561027-6561046 Msa0666530:intron 15.0%
!! ATTACTCAAATAGTATATAA+AGG - chr4_4:6561595-6561614 Msa0666530:intron 15.0%
!! TATCTATAACTATAACTAAA+TGG + chr4_4:6562238-6562257 None:intergenic 15.0%
!! AACAAATTTAGTAATATCCA+AGG + chr4_4:6560061-6560080 None:intergenic 20.0%
!!! CTTATCATGATTTTAAATTG+CGG - chr4_4:6560295-6560314 Msa0666530:CDS 20.0%
!!! TTATCATGATTTTAAATTGC+GGG - chr4_4:6560296-6560315 Msa0666530:CDS 20.0%
!! ATCACAAAGATATATAGATA+GGG - chr4_4:6560378-6560397 Msa0666530:CDS 20.0%
!! TCATTAATGAAATGCAATTA+AGG + chr4_4:6561019-6561038 None:intergenic 20.0%
!!! CAAACAAATTTTTCATTTGA+AGG - chr4_4:6561352-6561371 Msa0666530:CDS 20.0%
!! TTTATGATTCTCATTATTGT+AGG - chr4_4:6562008-6562027 Msa0666530:intron 20.0%
!! TATGCAAATAATACAACTTA+TGG - chr4_4:6562199-6562218 Msa0666530:intron 20.0%
!! GAACAAATTATTAGCATATA+GGG + chr4_4:6562405-6562424 None:intergenic 20.0%
!! TGAACAAATTATTAGCATAT+AGG + chr4_4:6562406-6562425 None:intergenic 20.0%
! TACATTAGAAGAAGAAAGAA+AGG + chr4_4:6560208-6560227 None:intergenic 25.0%
! GATCACAAAGATATATAGAT+AGG - chr4_4:6560377-6560396 Msa0666530:CDS 25.0%
! AAAAGAAGAGCAATAAACAA+AGG + chr4_4:6560799-6560818 None:intergenic 25.0%
!! CAAGATAGTTTGAATAGTTT+TGG - chr4_4:6560871-6560890 Msa0666530:intron 25.0%
!!! AAACATTTTTAAAGCTGATG+TGG - chr4_4:6560972-6560991 Msa0666530:intron 25.0%
! AATAAATCACACATTGTTTG+TGG + chr4_4:6561223-6561242 None:intergenic 25.0%
!! AATTTTTCATTTGAAGGACA+AGG - chr4_4:6561358-6561377 Msa0666530:CDS 25.0%
! CATTCAATAAATGGTATATG+TGG - chr4_4:6561866-6561885 Msa0666530:intron 25.0%
!!! ATGAAGTACCAATATTTTTG+AGG - chr4_4:6561966-6561985 Msa0666530:intron 25.0%
! GAAATCAACCTCAAAAATAT+TGG + chr4_4:6561977-6561996 None:intergenic 25.0%
! GAAATTGATATTCTTGATGA+TGG - chr4_4:6562121-6562140 Msa0666530:intron 25.0%
!!! ATATTCTTGATGATGGATAT+AGG - chr4_4:6562128-6562147 Msa0666530:intron 25.0%
! TTGTATTATTTGCATACCTT+GGG + chr4_4:6562195-6562214 None:intergenic 25.0%
! AAATTATTAGCATATAGGGT+TGG + chr4_4:6562401-6562420 None:intergenic 25.0%
!! GTTCAAAATAATGTTTCTAC+AGG - chr4_4:6562421-6562440 Msa0666530:intron 25.0%
! TGTAACATTACATGTATTGT+TGG + chr4_4:6562613-6562632 None:intergenic 25.0%
!! AATTGGTTCAAATACCAATT+CGG - chr4_4:6562779-6562798 Msa0666530:CDS 25.0%
TGTGATGTTATTGTTTGTGT+TGG + chr4_4:6560037-6560056 None:intergenic 30.0%
AAACAATAACATCACAACCT+TGG - chr4_4:6560041-6560060 Msa0666530:CDS 30.0%
GTGGAAAATCAGAATAAGAA+GGG + chr4_4:6560149-6560168 None:intergenic 30.0%
GTGAATTCAATAACTCTGAT+GGG + chr4_4:6560182-6560201 None:intergenic 30.0%
TTAGAAGAAGAAAGAAAGGA+AGG + chr4_4:6560204-6560223 None:intergenic 30.0%
!! TGTTTTTGTGTTTGGAAAGT+GGG + chr4_4:6560585-6560604 None:intergenic 30.0%
TGTGTGATTTATTGATGCTT+TGG - chr4_4:6561230-6561249 Msa0666530:CDS 30.0%
AATACTTGTTCAACTTGAAC+AGG - chr4_4:6561279-6561298 Msa0666530:CDS 30.0%
!! CTTATAGACATAGAAGCATT+AGG + chr4_4:6561421-6561440 None:intergenic 30.0%
CAAAGAAAATCAGAAGAAGA+TGG - chr4_4:6561445-6561464 Msa0666530:CDS 30.0%
TTCTTCTTCATTGAGCAAAT+TGG + chr4_4:6561547-6561566 None:intergenic 30.0%
CAATGAAGAAGAAAGTTGAA+AGG - chr4_4:6561554-6561573 Msa0666530:intron 30.0%
!!! ACATCACAAACTAGTTTTTC+TGG - chr4_4:6561748-6561767 Msa0666530:intron 30.0%
! TTATGATGATTTGGGAATAG+AGG - chr4_4:6561777-6561796 Msa0666530:intron 30.0%
GATTCTCATTATTGTAGGAA+AGG - chr4_4:6562013-6562032 Msa0666530:intron 30.0%
TATGGACAGAAAGTAGTTAA+AGG - chr4_4:6562160-6562179 Msa0666530:intron 30.0%
GTTGTATTATTTGCATACCT+TGG + chr4_4:6562196-6562215 None:intergenic 30.0%
!!! CGACTATTATTTTTAGACAG+AGG - chr4_4:6562341-6562360 Msa0666530:CDS 30.0%
TACTACAAATGTGTAATCCA+AGG - chr4_4:6562447-6562466 Msa0666530:intron 30.0%
CAGTAATCACAACATATGAA+GGG - chr4_4:6562517-6562536 Msa0666530:intron 30.0%
CATGTAATGTTACACCTATA+AGG - chr4_4:6562619-6562638 Msa0666530:intron 30.0%
!! GATGAATTCTAGAAGCTTTT+TGG - chr4_4:6562749-6562768 Msa0666530:CDS 30.0%
GGTGGAAAATCAGAATAAGA+AGG + chr4_4:6560150-6560169 None:intergenic 35.0%
! TCTTATTCTGATTTTCCACC+TGG - chr4_4:6560150-6560169 Msa0666530:CDS 35.0%
GGTGAATTCAATAACTCTGA+TGG + chr4_4:6560183-6560202 None:intergenic 35.0%
GGCTCATTTGTATAAGATGA+AGG + chr4_4:6560498-6560517 None:intergenic 35.0%
! TATGCTGTTGATTGATGCTT+TGG + chr4_4:6560530-6560549 None:intergenic 35.0%
!!! CTGTTTTTGTGTTTGGAAAG+TGG + chr4_4:6560586-6560605 None:intergenic 35.0%
!!! GCATAGTCTGTTTTTGTGTT+TGG + chr4_4:6560593-6560612 None:intergenic 35.0%
TATGCTCATCTTGACTTTCT+TGG - chr4_4:6560723-6560742 Msa0666530:CDS 35.0%
! AAGGCATTAAATGCAAGTGT+GGG + chr4_4:6560780-6560799 None:intergenic 35.0%
!! AAAGGCATTAAATGCAAGTG+TGG + chr4_4:6560781-6560800 None:intergenic 35.0%
! ATGTTTGACTTAGTCAACTG+AGG + chr4_4:6560923-6560942 None:intergenic 35.0%
CTGATGTGGCTAACATTAAA+CGG - chr4_4:6560986-6561005 Msa0666530:intron 35.0%
TAGAAGACAAGTCGATAAGA+CGG + chr4_4:6561123-6561142 None:intergenic 35.0%
! GTTTGTGCTTCATGTTTTGT+TGG + chr4_4:6561385-6561404 None:intergenic 35.0%
AATCAGAAGAAGATGGATAC+AGG - chr4_4:6561452-6561471 Msa0666530:CDS 35.0%
TATGGAGAGAAACAAGTGAA+AGG - chr4_4:6561484-6561503 Msa0666530:CDS 35.0%
GTGCACTTGTAATAACTTCT+TGG + chr4_4:6561520-6561539 None:intergenic 35.0%
GAAGAAAGTTGAAAGGTCTT+TGG - chr4_4:6561561-6561580 Msa0666530:intron 35.0%
TTGAAAGGTCTTTGGATGAT+GGG - chr4_4:6561569-6561588 Msa0666530:intron 35.0%
TTCATCATGCAACAACTCTA+TGG - chr4_4:6561687-6561706 Msa0666530:intron 35.0%
TATGGCTTCTGATCTTTCTT+TGG - chr4_4:6561705-6561724 Msa0666530:intron 35.0%
ATGGCTTCTGATCTTTCTTT+GGG - chr4_4:6561706-6561725 Msa0666530:intron 35.0%
!!! TCACAAACTAGTTTTTCTGG+AGG - chr4_4:6561751-6561770 Msa0666530:intron 35.0%
TGGAGGAGATTATGATGATT+TGG - chr4_4:6561768-6561787 Msa0666530:intron 35.0%
GGAGGAGATTATGATGATTT+GGG - chr4_4:6561769-6561788 Msa0666530:intron 35.0%
!! GTACTGATCTTACCATCTTT+TGG + chr4_4:6561803-6561822 None:intergenic 35.0%
TGCTTATAATAGTGACCAGA+GGG + chr4_4:6561827-6561846 None:intergenic 35.0%
TTGCTTATAATAGTGACCAG+AGG + chr4_4:6561828-6561847 None:intergenic 35.0%
GGTCACTATTATAAACCAGA+GGG + chr4_4:6561908-6561927 None:intergenic 35.0%
! CTCTGGTTTATAATAGTGAC+CGG - chr4_4:6561907-6561926 Msa0666530:intron 35.0%
!! TTCTTGATGATGGATATAGG+TGG - chr4_4:6562131-6562150 Msa0666530:intron 35.0%
TTAAAGGAAATCCAAACCCA+AGG - chr4_4:6562176-6562195 Msa0666530:intron 35.0%
TTATTTGCATACCTTGGGTT+TGG + chr4_4:6562190-6562209 None:intergenic 35.0%
!! ACAGAGGAAGTACTTAACTT+TGG - chr4_4:6562357-6562376 Msa0666530:intron 35.0%
!! AGTACTTAACTTTGGAGTTC+TGG - chr4_4:6562365-6562384 Msa0666530:intron 35.0%
GCAGTAATCACAACATATGA+AGG - chr4_4:6562516-6562535 Msa0666530:intron 35.0%
! AGCTTTTTGGACAGATCAAT+TGG - chr4_4:6562762-6562781 Msa0666530:CDS 35.0%
TACCAATTCGGAACAATACT+CGG - chr4_4:6562791-6562810 Msa0666530:CDS 35.0%
! TTGATGCTTTGGACAGTAGA+AGG + chr4_4:6560519-6560538 None:intergenic 40.0%
CATCAATCAACAGCATAGCA+AGG - chr4_4:6560533-6560552 Msa0666530:intron 40.0%
TTCCACAAGCATGTTTCAAG+TGG - chr4_4:6560629-6560648 Msa0666530:intron 40.0%
TACCACTTGAAACATGCTTG+TGG + chr4_4:6560634-6560653 None:intergenic 40.0%
AATGTGTCCTGTGTCTTTAG+TGG + chr4_4:6561310-6561329 None:intergenic 40.0%
GGATACAGGTGGAGAAAATA+TGG - chr4_4:6561466-6561485 Msa0666530:CDS 40.0%
GTTGAAAGGTCTTTGGATGA+TGG - chr4_4:6561568-6561587 Msa0666530:intron 40.0%
! CTTTTTGTACACTGAGGCTT+AGG + chr4_4:6561634-6561653 None:intergenic 40.0%
! GCTCTTCTTTTTGTACACTG+AGG + chr4_4:6561640-6561659 None:intergenic 40.0%
GAGTTGTTGCATGATGAAGA+AGG + chr4_4:6561685-6561704 None:intergenic 40.0%
! TTCTGATCTTTCTTTGGGAG+AGG - chr4_4:6561711-6561730 Msa0666530:intron 40.0%
CACTATTATAAACCAGAGGG+TGG + chr4_4:6561905-6561924 None:intergenic 40.0%
CGGTCACTATTATAAACCAG+AGG + chr4_4:6561909-6561928 None:intergenic 40.0%
TGGTTTATAATAGTGACCGG+AGG - chr4_4:6561910-6561929 Msa0666530:intron 40.0%
GGTTTATAATAGTGACCGGA+GGG - chr4_4:6561911-6561930 Msa0666530:intron 40.0%
GCACAAAAAAATACACCCTC+CGG + chr4_4:6561929-6561948 None:intergenic 40.0%
AGCTACTCTTATTCCACAGA+AGG - chr4_4:6562052-6562071 Msa0666530:intron 40.0%
GCTACTCTTATTCCACAGAA+GGG - chr4_4:6562053-6562072 Msa0666530:intron 40.0%
! AGAAGGGTGTAGAACTGTTA+AGG - chr4_4:6562069-6562088 Msa0666530:intron 40.0%
TGTTAAGGAACCTAGAGTTG+TGG - chr4_4:6562084-6562103 Msa0666530:intron 40.0%
GTAGTTTGAACCACAACTCT+AGG + chr4_4:6562097-6562116 None:intergenic 40.0%
!! TTGATGATGGATATAGGTGG+AGG - chr4_4:6562134-6562153 Msa0666530:intron 40.0%
GGATATAGGTGGAGGAAATA+TGG - chr4_4:6562142-6562161 Msa0666530:intron 40.0%
! GTTTTCTCACAGTACAACCT+TGG + chr4_4:6562467-6562486 None:intergenic 40.0%
CATAACCATGATGTACCTCT+AGG - chr4_4:6562543-6562562 Msa0666530:intron 40.0%
CTTGAAATTCCTCTTCCTAG+AGG + chr4_4:6562561-6562580 None:intergenic 40.0%
GAATAGTTAGTCACTGCTGA+AGG + chr4_4:6562645-6562664 None:intergenic 40.0%
GGAAGAACCACTAAAGACAC+AGG - chr4_4:6561300-6561319 Msa0666530:CDS 45.0%
CAGAAGAAGATGGATACAGG+TGG - chr4_4:6561455-6561474 Msa0666530:CDS 45.0%
TTGTACACTGAGGCTTAGGA+TGG + chr4_4:6561630-6561649 None:intergenic 45.0%
TGGGAATAGAGGCCAAAAGA+TGG - chr4_4:6561788-6561807 Msa0666530:intron 45.0%
TTATAACGTAGACCACCCTC+TGG - chr4_4:6561890-6561909 Msa0666530:intron 45.0%
AACAGTTCTACACCCTTCTG+TGG + chr4_4:6562068-6562087 None:intergenic 45.0%
! CTCTTCCTAGAGGTACATCA+TGG + chr4_4:6562551-6562570 None:intergenic 45.0%
! CATGATGTACCTCTAGGAAG+AGG - chr4_4:6562549-6562568 Msa0666530:intron 45.0%
! AGCCGAGTATTGTTCCGAAT+TGG + chr4_4:6562796-6562815 None:intergenic 45.0%
!! AACTCTGATGGGCTGAAACC+AGG + chr4_4:6560171-6560190 None:intergenic 50.0%
! GTCACTGCTGAAGGCCTTAT+AGG + chr4_4:6562636-6562655 None:intergenic 50.0%
!! TCTGATGGGCTGAAACCAGG+TGG + chr4_4:6560168-6560187 None:intergenic 55.0%
GGTAAGATCAGTACGCCCTC+TGG - chr4_4:6561809-6561828 Msa0666530:intron 55.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 6560006 6562860 6560006 ID=Msa0666530;Name=Msa0666530
chr4_4 mRNA 6560006 6562860 6560006 ID=Msa0666530-mRNA-1;Parent=Msa0666530;Name=Msa0666530-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.75|0|1|1|1|5|0|490
chr4_4 exon 6562642 6562860 6562642 ID=Msa0666530-mRNA-1:exon:2128;Parent=Msa0666530-mRNA-1
chr4_4 exon 6562216 6562374 6562216 ID=Msa0666530-mRNA-1:exon:2127;Parent=Msa0666530-mRNA-1
chr4_4 exon 6561057 6561565 6561057 ID=Msa0666530-mRNA-1:exon:2126;Parent=Msa0666530-mRNA-1
chr4_4 exon 6560669 6560836 6560669 ID=Msa0666530-mRNA-1:exon:2125;Parent=Msa0666530-mRNA-1
chr4_4 exon 6560006 6560423 6560006 ID=Msa0666530-mRNA-1:exon:2124;Parent=Msa0666530-mRNA-1
chr4_4 CDS 6562642 6562860 6562642 ID=Msa0666530-mRNA-1:cds;Parent=Msa0666530-mRNA-1
chr4_4 CDS 6562216 6562374 6562216 ID=Msa0666530-mRNA-1:cds;Parent=Msa0666530-mRNA-1
chr4_4 CDS 6561057 6561565 6561057 ID=Msa0666530-mRNA-1:cds;Parent=Msa0666530-mRNA-1
chr4_4 CDS 6560669 6560836 6560669 ID=Msa0666530-mRNA-1:cds;Parent=Msa0666530-mRNA-1
chr4_4 CDS 6560006 6560423 6560006 ID=Msa0666530-mRNA-1:cds;Parent=Msa0666530-mRNA-1
Gene Sequence

>Msa0666530

ATGTCTTTTAGTTTCAACAATCACTTTTCCAACACAAACAATAACATCACAACCTTGGATATTACTAAATTTGTTGAAACTTCTTCTCAACTAAAAACTCATGATGATGATGATCATTTTTCACTTGATGATGTAATTTACCCTTCTTATTCTGATTTTCCACCTGGTTTCAGCCCATCAGAGTTATTGAATTCACCTTCCTTTCTTTCTTCTTCTAATATTCCTTCATCTTATACAAATGAGCCTTCTACTGTCCAAAGCATCAATCAACAGCATAGCAAGGAATTAGAAGAGAGAAACTTCTCTGAGCCCACTTTCCAAACACAAAAACAGACTATGCATGATCTCTTTCAATCTTCCACAAGCATGTTTCAAGTGGAAGAACCACTAAAGACACAGGACACATTGATATTCAATGAATCTACAAAGCAAACAAATTTTTCATTTGAAGGACAAGGACCAACAAAACATGAAGCACAAACTAATTCTTCAGTTCCTAATGCTTCTATGTCTATAAGAGAACAAAGAAAATCAGAAGAAGATGGATACAGGTGGAGAAAATATGGAGAGAAACAAGTGAAAGGAAGTGAAAATCCAAGAAGTTATTACAAGTGCACTAATCCAATTTGCTCAATGAAGAAGAAAGTTGAAAGGTCTTTGGATGATGGGCAAATTACTCAAATAGTATATAAAGGAAGTCATAACCATCCTAAGCCTCAGTGTACAAAAAGAAGAGCAAATTCTCAACATATTCAACAACCTTCTTCATCATGCAACAACTCTATGGCTTCTGATCTTTCTTTGGGAGAGGATGATTTTGATCAAACATCACAAACTAGTTTTTCTGGAGGAGATTATGATGATTTGGGAATAGAGGCCAAAAGATGGAAAGGAGAGAATGAAAATGATAGCTACTCTTATTCCACAGAAGGGTGTAGAACTGTTAAGGAACCTAGAGTTGTGGTTCAAACTACAAGTGAAATTGATATTCTTGATGATGGATATAGGTGGAGGAAATATGGACAGAAAGTAGTTAAAGGAAATCCAAACCCAAGGAGCTACTACAAATGTGTAATCCAAGGTTGTACTGTGAGAAAACATGTTGAGAGAGCTTCACATGATATTAAAGCAGTAATCACAACATATGAAGGGAAACATAACCATGATGTACCTCTAGGAAGAGGAATTTCAAGCAGTAGCATAAACAACAGAACTTCTCTTACCAACAATACATGTAATGTTACACCTATAAGGCCTTCAGCAGTGACTAACTATTCTAGCTTAGCAAATTTTACAAATTCACTTCATGATTCAAAGCTATCAAATTCTGAAAATCAAGAACATTTTCAGCTTGACATGTTGATGAATTCTAGAAGCTTTTTGGACAGATCAATTGGTTCAAATACCAATTCGGAACAATACTCGGCTAAAGATGACTCATTCTTTCAATCTTTTATATTGAAGAACTTTTAA
Protein sequence

>Msa0666530

MSFSFNNHFSNTNNNITTLDITKFVETSSQLKTHDDDDHFSLDDVIYPSYSDFPPGFSPSELLNSPSFLSSSNIPSSYTNEPSTVQSINQQHSKELEERNFSEPTFQTQKQTMHDLFQSSTSMFQVEEPLKTQDTLIFNESTKQTNFSFEGQGPTKHEAQTNSSVPNASMSIREQRKSEEDGYRWRKYGEKQVKGSENPRSYYKCTNPICSMKKKVERSLDDGQITQIVYKGSHNHPKPQCTKRRANSQHIQQPSSSCNNSMASDLSLGEDDFDQTSQTSFSGGDYDDLGIEAKRWKGENENDSYSYSTEGCRTVKEPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCVIQGCTVRKHVERASHDIKAVITTYEGKHNHDVPLGRGISSSSINNRTSLTNNTCNVTPIRPSAVTNYSSLANFTNSLHDSKLSNSENQEHFQLDMLMNSRSFLDRSIGSNTNSEQYSAKDDSFFQSFILKNF*