AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0588710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0588710 MtrunA17_Chr4g0004911 94.545 495 25 2 1 495 1 493 0.0 924
Msa0588710 MtrunA17_Chr7g0243891 53.600 500 163 17 52 495 59 545 2.35e-149 437
Msa0588710 MtrunA17_Chr3g0106491 50.639 391 146 11 48 407 61 435 5.02e-104 320
Msa0588710 MtrunA17_Chr5g0432161 47.356 435 165 14 49 427 85 511 1.51e-100 313
Msa0588710 MtrunA17_Chr5g0445311 41.809 409 174 14 52 412 47 439 4.93e-78 254
Msa0588710 MtrunA17_Chr5g0418191 47.712 306 125 7 137 411 93 394 3.00e-75 243
Msa0588710 MtrunA17_Chr7g0218081 40.146 411 179 14 52 428 113 490 1.02e-74 244
Msa0588710 MtrunA17_Chr3g0101131 53.112 241 87 5 182 399 240 477 1.75e-73 243
Msa0588710 MtrunA17_Chr4g0042831 47.266 256 106 5 176 421 126 362 4.84e-70 228
Msa0588710 MtrunA17_Chr7g0249311 43.910 312 105 8 175 421 169 475 1.88e-65 223
Msa0588710 MtrunA17_Chr7g0249311 40.196 102 61 0 185 286 392 493 4.20e-16 81.3
Msa0588710 MtrunA17_Chr7g0263531 50.000 236 90 6 186 397 190 421 3.01e-63 212
Msa0588710 MtrunA17_Chr5g0447701 39.326 267 122 6 182 429 89 334 1.53e-49 174
Msa0588710 MtrunA17_Chr3g0079691 66.187 139 38 4 275 411 436 567 1.89e-48 177
Msa0588710 MtrunA17_Chr3g0079691 34.766 256 132 9 28 249 89 343 4.15e-26 112
Msa0588710 MtrunA17_Chr3g0079691 56.452 62 27 0 185 246 495 556 1.42e-16 82.8
Msa0588710 MtrunA17_Chr3g0079691 56.667 60 25 1 337 396 280 338 1.39e-13 73.6
Msa0588710 MtrunA17_Chr7g0249301 79.268 82 17 0 318 399 273 354 1.18e-41 153
Msa0588710 MtrunA17_Chr7g0249301 57.333 75 31 1 175 249 52 125 1.45e-20 93.6
Msa0588710 MtrunA17_Chr7g0249301 55.000 60 27 0 185 244 292 351 1.86e-15 78.2
Msa0588710 MtrunA17_Chr7g0249301 61.905 63 19 3 336 396 61 120 6.25e-14 73.6
Msa0588710 MtrunA17_Chr5g0447711 34.821 224 141 2 185 408 83 301 1.11e-38 143
Msa0588710 MtrunA17_Chr4g0074001 32.468 308 174 7 173 452 174 475 3.09e-37 143
Msa0588710 MtrunA17_Chr1g0188941 65.823 79 27 0 318 396 32 110 1.30e-32 120
Msa0588710 MtrunA17_Chr1g0188941 53.333 60 28 0 185 244 51 110 4.00e-17 77.4
Msa0588710 MtrunA17_Chr8g0335811 61.842 76 29 0 318 393 135 210 2.60e-28 112
Msa0588710 MtrunA17_Chr8g0335811 39.394 99 44 1 159 241 112 210 5.27e-16 77.4
Msa0588710 MtrunA17_Chr4g0051881 64.865 74 26 0 323 396 164 237 1.93e-27 112
Msa0588710 MtrunA17_Chr4g0051881 52.273 88 39 2 173 260 167 251 4.64e-20 91.3
Msa0588710 MtrunA17_Chr1g0150801 61.842 76 28 1 318 393 84 158 5.23e-27 106
Msa0588710 MtrunA17_Chr1g0150801 53.448 58 27 0 185 242 102 159 1.60e-15 74.3
Msa0588710 MtrunA17_Chr3g0129361 59.459 74 30 0 320 393 127 200 3.19e-26 106
Msa0588710 MtrunA17_Chr3g0129361 50.877 57 28 0 185 241 144 200 1.27e-14 73.2
Msa0588710 MtrunA17_Chr7g0270191 47.414 116 51 2 321 436 129 234 1.07e-25 106
Msa0588710 MtrunA17_Chr7g0270191 41.791 134 71 4 138 270 104 231 1.81e-20 91.7
Msa0588710 MtrunA17_Chr5g0443131 62.162 74 28 0 323 396 143 216 1.61e-25 106
Msa0588710 MtrunA17_Chr5g0443131 55.224 67 30 0 185 251 157 223 2.40e-17 82.8
Msa0588710 MtrunA17_Chr8g0386241 55.422 83 37 0 313 395 79 161 1.62e-25 103
Msa0588710 MtrunA17_Chr8g0386241 53.448 58 27 0 185 242 103 160 1.25e-15 75.1
Msa0588710 MtrunA17_Chr2g0294231 60.526 76 30 0 321 396 187 262 1.66e-25 107
Msa0588710 MtrunA17_Chr2g0294231 52.809 89 39 2 173 261 192 277 5.23e-22 97.8
Msa0588710 MtrunA17_Chr8g0383251 39.850 133 78 1 267 397 36 168 2.11e-25 102
Msa0588710 MtrunA17_Chr8g0383251 53.333 60 28 0 185 244 108 167 2.62e-15 74.3
Msa0588710 MtrunA17_Chr8g0383351 58.667 75 30 1 320 393 142 216 5.24e-25 103
Msa0588710 MtrunA17_Chr8g0383351 50.877 57 28 0 185 241 160 216 7.78e-15 73.9
Msa0588710 MtrunA17_Chr7g0224801 63.235 68 25 0 328 395 84 151 1.03e-24 100
Msa0588710 MtrunA17_Chr7g0224801 49.206 63 32 0 185 247 93 155 2.49e-15 73.9
Msa0588710 MtrunA17_Chr1g0194481 57.895 76 32 0 321 396 142 217 1.25e-24 104
Msa0588710 MtrunA17_Chr1g0194481 50.000 88 43 1 173 260 147 233 2.15e-19 89.4
Msa0588710 MtrunA17_Chr5g0418781 56.962 79 34 0 315 393 102 180 1.47e-24 103
Msa0588710 MtrunA17_Chr5g0418781 57.971 69 28 1 173 241 113 180 5.93e-17 81.3
Msa0588710 MtrunA17_Chr3g0129321 54.667 75 34 0 323 397 104 178 5.23e-23 96.7
Msa0588710 MtrunA17_Chr3g0129321 51.667 60 29 0 185 244 118 177 1.04e-14 73.2
Msa0588710 MtrunA17_Chr4g0051181 51.899 79 37 1 321 398 227 305 6.72e-23 101
Msa0588710 MtrunA17_Chr4g0051181 51.667 60 28 1 186 244 244 303 1.15e-14 76.3
Msa0588710 MtrunA17_Chr3g0099641 51.282 78 37 1 320 396 234 311 8.91e-23 100
Msa0588710 MtrunA17_Chr3g0099641 29.167 168 98 5 99 253 161 320 4.01e-13 71.2
Msa0588710 MtrunA17_Chr7g0270831 53.247 77 35 1 321 396 200 276 9.21e-23 100
Msa0588710 MtrunA17_Chr7g0270831 48.333 60 30 1 186 244 217 276 4.24e-14 74.3
Msa0588710 MtrunA17_Chr2g0288871 51.899 79 37 1 319 396 287 365 1.01e-22 101
Msa0588710 MtrunA17_Chr2g0288871 43.373 83 39 3 170 244 283 365 1.89e-14 75.9
Msa0588710 MtrunA17_Chr5g0432071 48.077 104 51 3 178 279 97 199 1.54e-22 95.5
Msa0588710 MtrunA17_Chr5g0432071 53.333 60 27 1 337 396 104 162 2.66e-13 68.9
Msa0588710 MtrunA17_Chr4g0075201 51.899 79 37 1 319 396 249 327 1.56e-22 100
Msa0588710 MtrunA17_Chr4g0075201 46.667 60 31 1 186 244 268 327 3.27e-13 71.6
Msa0588710 MtrunA17_Chr2g0322391 51.899 79 37 1 319 396 331 409 2.86e-22 100
Msa0588710 MtrunA17_Chr2g0322391 45.000 60 32 1 186 244 350 409 1.75e-11 66.6
Msa0588710 MtrunA17_Chr4g0060271 50.633 79 38 1 320 397 238 316 3.02e-22 100
Msa0588710 MtrunA17_Chr4g0060271 48.333 60 30 1 186 244 256 315 7.00e-13 70.9
Msa0588710 MtrunA17_Chr7g0248721 59.211 76 30 1 318 393 122 196 3.17e-22 95.1
Msa0588710 MtrunA17_Chr7g0248721 55.172 58 25 1 185 242 141 197 3.35e-14 72.0
Msa0588710 MtrunA17_Chr4g0068541 53.247 77 36 0 321 397 192 268 1.12e-21 97.4
Msa0588710 MtrunA17_Chr4g0068541 50.000 76 37 1 185 260 208 282 8.18e-16 79.3
Msa0588710 MtrunA17_Chr1g0189391 46.667 105 54 2 291 393 50 154 2.98e-21 94.7
Msa0588710 MtrunA17_Chr1g0189391 50.000 58 28 1 185 241 97 154 5.25e-12 67.0
Msa0588710 MtrunA17_Chr1g0147881 53.165 79 33 2 318 395 246 321 1.36e-20 92.8
Msa0588710 MtrunA17_Chr1g0147881 50.877 57 27 1 186 241 263 319 8.93e-12 66.6
Msa0588710 MtrunA17_Chr4g0053281 50.633 79 35 2 318 395 250 325 1.65e-20 92.8
Msa0588710 MtrunA17_Chr4g0053281 52.632 57 26 1 186 241 267 323 4.38e-14 73.6
Msa0588710 MtrunA17_Chr6g0485431 52.632 76 35 1 323 397 140 215 2.63e-20 92.4
Msa0588710 MtrunA17_Chr6g0485431 47.692 65 33 1 186 249 155 219 7.47e-15 75.9
Msa0588710 MtrunA17_Chr2g0302391 45.361 97 45 3 316 407 193 286 3.46e-20 92.8
Msa0588710 MtrunA17_Chr2g0302391 42.647 68 38 1 186 252 212 279 1.04e-11 66.6
Msa0588710 MtrunA17_Chr2g0333851 42.373 118 52 4 314 426 144 250 4.10e-20 91.3
Msa0588710 MtrunA17_Chr2g0333851 50.820 61 29 1 185 244 169 229 5.46e-16 79.0
Msa0588710 MtrunA17_Chr7g0216891 49.351 77 38 1 320 395 202 278 4.89e-20 93.2
Msa0588710 MtrunA17_Chr7g0216891 51.724 58 27 1 186 242 220 277 7.29e-14 73.9
Msa0588710 MtrunA17_Chr4g0025061 49.367 79 39 1 319 396 342 420 5.67e-20 93.2
Msa0588710 MtrunA17_Chr4g0025061 42.667 75 38 2 182 251 353 427 9.34e-12 67.4
Msa0588710 MtrunA17_Chr5g0401821 50.617 81 39 1 318 397 180 260 7.47e-20 89.4
Msa0588710 MtrunA17_Chr5g0401821 52.632 57 26 1 186 241 200 256 2.15e-13 70.5
Msa0588710 MtrunA17_Chr4g0025051 51.351 74 35 1 324 396 322 395 9.09e-19 89.4
Msa0588710 MtrunA17_Chr3g0136961 35.570 149 73 4 263 393 52 195 1.06e-18 86.7
Msa0588710 MtrunA17_Chr3g0136961 48.276 58 29 1 185 241 138 195 1.54e-13 71.2
Msa0588710 MtrunA17_Chr4g0071521 49.351 77 35 2 318 393 229 302 1.04e-17 84.0
Msa0588710 MtrunA17_Chr4g0071521 41.333 75 39 2 186 259 246 316 6.64e-11 63.5
Msa0588710 MtrunA17_Chr1g0184691 49.351 77 35 2 318 393 277 350 1.75e-17 84.0
Msa0588710 MtrunA17_Chr1g0184691 50.847 59 28 1 186 243 294 352 3.99e-13 70.9
Msa0588710 MtrunA17_Chr7g0238921 59.649 57 23 0 337 393 124 180 1.94e-17 83.2
Msa0588710 MtrunA17_Chr7g0238921 61.404 57 22 0 185 241 124 180 2.19e-17 83.2
Msa0588710 MtrunA17_Chr4g0001361 41.748 103 45 3 335 428 160 256 2.52e-17 82.8
Msa0588710 MtrunA17_Chr4g0001361 38.000 100 60 2 185 282 162 261 1.37e-15 77.8
Msa0588710 MtrunA17_Chr1g0150271 45.205 73 39 1 325 396 89 161 2.93e-16 78.6
Msa0588710 MtrunA17_Chr1g0150271 44.262 61 33 1 185 244 101 161 1.28e-11 65.1
Msa0588710 MtrunA17_Chr1g0150281 41.304 92 48 3 308 393 106 197 2.97e-16 79.3
Msa0588710 MtrunA17_Chr1g0150281 47.368 57 29 1 186 241 141 197 1.16e-12 68.6
Msa0588710 MtrunA17_Chr8g0379461 32.877 146 65 4 338 458 77 214 1.84e-15 76.3
Msa0588710 MtrunA17_Chr8g0379461 42.466 73 41 1 173 244 64 136 4.45e-11 63.2
Msa0588710 MtrunA17_Chr4g0024391 34.746 118 63 2 319 422 211 328 4.80e-15 77.4
Msa0588710 MtrunA17_Chr3g0139021 43.590 78 43 1 318 394 295 372 5.08e-15 77.0
Msa0588710 MtrunA17_Chr7g0270051 50.000 62 30 1 338 398 54 115 5.14e-15 75.1
Msa0588710 MtrunA17_Chr7g0270051 42.391 92 50 2 172 262 40 129 2.85e-14 73.2
Msa0588710 MtrunA17_Chr1g0202461 35.577 104 65 2 318 420 243 345 7.58e-15 76.3
Msa0588710 MtrunA17_Chr1g0202461 45.000 60 32 1 186 244 262 321 1.16e-11 66.6
Msa0588710 MtrunA17_Chr2g0293481 43.023 86 47 2 330 414 261 345 1.17e-14 76.3
Msa0588710 MtrunA17_Chr2g0293481 49.254 67 31 2 186 251 268 332 3.25e-12 68.6
Msa0588710 MtrunA17_Chr7g0228941 45.455 77 39 2 318 393 35 109 2.17e-14 69.7
Msa0588710 MtrunA17_Chr7g0228941 45.614 57 30 1 186 241 53 109 2.36e-11 61.2
Msa0588710 MtrunA17_Chr2g0319961 47.826 69 35 1 338 405 81 149 3.19e-14 72.8
Msa0588710 MtrunA17_Chr8g0387501 37.374 99 61 1 336 433 128 226 3.69e-14 72.8
Msa0588710 MtrunA17_Chr8g0387501 46.667 60 31 1 186 244 130 189 2.97e-12 67.0
Msa0588710 MtrunA17_Chr8g0348311 42.391 92 41 3 338 428 156 236 6.31e-14 73.2
Msa0588710 MtrunA17_Chr8g0348311 32.039 103 69 1 143 244 113 215 3.45e-11 64.7
Msa0588710 MtrunA17_Chr2g0289181 48.485 66 33 1 332 396 9 74 1.02e-13 70.9
Msa0588710 MtrunA17_Chr2g0289181 46.154 65 34 1 185 248 14 78 1.16e-11 64.7
Msa0588710 MtrunA17_Chr2g0284321 43.902 82 38 2 338 418 36 110 1.79e-13 69.7
Msa0588710 MtrunA17_Chr7g0248691 51.667 60 28 1 338 396 155 214 3.03e-13 70.9
Msa0588710 MtrunA17_Chr6g0468181 64.151 53 18 1 201 253 18 69 5.76e-13 65.5
Msa0588710 MtrunA17_Chr3g0126391 40.789 76 40 2 336 408 132 205 5.19e-12 67.0
Msa0588710 MtrunA17_Chr3g0126391 48.276 58 27 2 185 239 133 190 3.08e-11 64.7
Msa0588710 MtrunA17_Chr4g0009881 50.000 66 31 2 180 245 12 75 8.10e-12 62.0
Msa0588710 MtrunA17_Chr8g0387981 50.000 58 26 1 185 239 132 189 1.32e-11 66.2
Msa0588710 MtrunA17_Chr8g0387981 48.276 58 27 1 337 391 132 189 5.50e-11 64.3
Msa0588710 MtrunA17_Chr1g0188961 70.000 40 12 0 357 396 3 42 1.51e-11 60.1
Msa0588710 MtrunA17_Chr1g0188971 62.500 40 15 0 318 357 43 82 2.54e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0588710 AT2G38470.1 44.348 460 147 17 56 461 64 468 9.43e-95 297
Msa0588710 AT5G07100.1 46.875 352 103 11 49 399 28 296 1.57e-83 261
Msa0588710 AT5G07100.1 40.426 94 45 1 323 405 92 185 2.85e-14 73.9
Msa0588710 AT1G13960.1 41.439 403 164 10 29 396 103 468 1.17e-80 260
Msa0588710 AT5G07100.2 62.100 219 46 6 182 399 21 203 2.69e-80 249
Msa0588710 AT5G07100.2 49.275 69 35 0 337 405 24 92 1.66e-13 70.1
Msa0588710 AT5G07100.4 62.100 219 46 6 182 399 21 203 2.69e-80 249
Msa0588710 AT5G07100.4 49.275 69 35 0 337 405 24 92 1.66e-13 70.1
Msa0588710 AT5G07100.5 62.100 219 46 6 182 399 21 203 2.69e-80 249
Msa0588710 AT5G07100.5 49.275 69 35 0 337 405 24 92 1.66e-13 70.1
Msa0588710 AT5G07100.3 62.100 219 46 6 182 399 21 203 2.69e-80 249
Msa0588710 AT5G07100.3 49.275 69 35 0 337 405 24 92 1.66e-13 70.1
Msa0588710 AT2G03340.1 41.975 405 185 13 47 426 124 503 9.75e-77 250
Msa0588710 AT2G03340.1 41.593 113 54 2 337 449 250 350 1.24e-15 79.7
Msa0588710 AT4G26640.7 39.709 413 179 12 52 409 16 413 2.19e-76 249
Msa0588710 AT1G13960.2 55.102 245 78 5 182 396 73 315 3.30e-76 244
Msa0588710 AT4G26640.2 39.709 413 179 12 52 409 56 453 6.90e-76 249
Msa0588710 AT4G26640.5 53.689 244 93 5 185 409 35 277 7.71e-76 243
Msa0588710 AT4G26640.5 54.839 62 27 1 335 396 33 93 4.21e-13 71.2
Msa0588710 AT4G26640.6 53.689 244 93 5 185 409 35 277 7.71e-76 243
Msa0588710 AT4G26640.6 54.839 62 27 1 335 396 33 93 4.21e-13 71.2
Msa0588710 AT4G26640.4 53.689 244 93 5 185 409 35 277 7.71e-76 243
Msa0588710 AT4G26640.4 54.839 62 27 1 335 396 33 93 4.21e-13 71.2
Msa0588710 AT4G26640.3 53.689 244 93 5 185 409 35 277 7.71e-76 243
Msa0588710 AT4G26640.3 54.839 62 27 1 335 396 33 93 4.21e-13 71.2
Msa0588710 AT4G26640.1 53.689 244 93 5 185 409 139 381 1.90e-75 246
Msa0588710 AT4G26640.1 54.839 62 27 1 335 396 137 197 3.38e-13 72.0
Msa0588710 AT5G56270.1 38.495 465 180 16 31 399 95 549 6.86e-72 241
Msa0588710 AT2G30250.1 54.825 228 79 5 186 396 167 387 7.85e-72 233
Msa0588710 AT2G30250.1 56.250 64 28 0 186 249 329 392 1.36e-16 82.0
Msa0588710 AT3G01080.1 55.349 215 83 5 182 396 164 365 1.16e-65 218
Msa0588710 AT4G26440.1 37.330 442 176 15 54 442 88 481 1.80e-62 214
Msa0588710 AT2G37260.2 44.800 250 102 5 182 397 80 327 3.42e-54 186
Msa0588710 AT2G37260.2 54.286 70 28 2 338 404 84 152 3.08e-13 71.2
Msa0588710 AT2G37260.3 44.800 250 102 5 182 397 82 329 3.72e-54 186
Msa0588710 AT2G37260.3 54.286 70 28 2 338 404 86 154 3.13e-13 71.2
Msa0588710 AT2G04880.2 43.089 246 114 6 180 402 106 348 1.38e-53 187
Msa0588710 AT2G37260.1 44.800 250 102 5 182 397 162 409 1.56e-53 186
Msa0588710 AT2G37260.1 54.286 70 28 2 338 404 166 234 4.90e-13 71.2
Msa0588710 AT2G04880.1 40.217 276 103 8 180 402 106 372 2.69e-51 182
Msa0588710 AT2G04880.1 43.000 100 45 2 186 285 308 395 2.72e-16 81.6
Msa0588710 AT4G30935.1 41.202 233 116 6 181 397 164 391 9.75e-44 160
Msa0588710 AT4G30935.1 41.667 96 49 1 186 281 332 420 6.10e-16 80.5
Msa0588710 AT4G12020.6 41.176 238 100 8 155 357 429 661 1.01e-36 145
Msa0588710 AT4G12020.6 49.180 61 30 1 336 396 467 526 9.60e-11 65.1
Msa0588710 AT4G12020.8 41.176 238 100 8 155 357 429 661 1.01e-36 145
Msa0588710 AT4G12020.8 49.180 61 30 1 336 396 467 526 9.60e-11 65.1
Msa0588710 AT4G12020.3 41.176 238 100 8 155 357 429 661 1.02e-36 145
Msa0588710 AT4G12020.7 41.176 238 100 8 155 357 429 661 1.17e-36 145
Msa0588710 AT4G12020.7 49.180 61 30 1 336 396 467 526 9.79e-11 65.1
Msa0588710 AT4G12020.10 41.176 238 100 8 155 357 429 661 1.21e-36 145
Msa0588710 AT4G12020.2 41.176 238 100 8 155 357 429 661 1.23e-36 145
Msa0588710 AT4G12020.4 41.176 238 100 8 155 357 429 661 1.25e-36 145
Msa0588710 AT4G12020.1 41.176 238 100 8 155 357 429 661 1.26e-36 145
Msa0588710 AT4G12020.9 41.176 238 100 8 155 357 429 661 1.26e-36 145
Msa0588710 AT4G12020.5 41.176 238 100 8 155 357 362 594 1.71e-36 144
Msa0588710 AT4G12020.11 41.176 238 100 8 155 357 429 661 2.34e-36 144
Msa0588710 AT2G44745.1 47.748 111 57 1 283 393 92 201 1.78e-28 112
Msa0588710 AT2G44745.1 54.386 57 26 0 185 241 145 201 5.95e-15 74.3
Msa0588710 AT4G18170.1 63.158 76 28 0 321 396 156 231 1.35e-27 113
Msa0588710 AT4G18170.1 57.143 70 29 1 175 244 163 231 4.08e-18 85.9
Msa0588710 AT1G29860.1 64.474 76 27 0 321 396 120 195 2.95e-27 111
Msa0588710 AT1G29860.1 50.000 84 41 1 173 256 125 207 1.83e-19 89.0
Msa0588710 AT4G39410.1 61.842 76 29 0 318 393 204 279 7.82e-27 110
Msa0588710 AT4G39410.1 44.872 78 42 1 185 261 223 300 7.74e-16 78.6
Msa0588710 AT1G55600.1 60.494 81 32 0 316 396 286 366 1.20e-26 113
Msa0588710 AT1G55600.1 49.425 87 35 2 169 246 282 368 1.57e-18 88.6
Msa0588710 AT5G46350.1 59.740 77 31 0 323 399 169 245 4.56e-26 108
Msa0588710 AT5G46350.1 57.576 66 26 1 185 250 183 246 1.82e-17 84.0
Msa0588710 AT5G26170.1 60.000 70 28 0 324 393 100 169 1.10e-25 103
Msa0588710 AT5G26170.1 54.386 57 26 0 185 241 113 169 1.18e-15 75.5
Msa0588710 AT5G13080.1 49.000 100 43 1 304 395 26 125 3.25e-25 101
Msa0588710 AT5G13080.1 48.438 64 33 0 185 248 67 130 4.03e-15 73.2
Msa0588710 AT3G01970.1 62.500 72 27 0 324 395 52 123 3.69e-25 101
Msa0588710 AT3G01970.1 52.632 57 27 0 185 241 65 121 2.25e-14 70.9
Msa0588710 AT5G49520.1 59.740 77 31 0 321 397 205 281 3.78e-25 107
Msa0588710 AT5G49520.1 56.250 64 28 0 185 248 221 284 7.47e-18 85.9
Msa0588710 AT5G41570.1 57.895 76 32 0 318 393 79 154 4.88e-25 102
Msa0588710 AT5G41570.1 53.448 58 27 0 185 242 98 155 5.59e-16 76.3
Msa0588710 AT1G64000.1 55.696 79 35 0 315 393 92 170 7.18e-25 102
Msa0588710 AT1G64000.1 53.448 58 27 0 185 242 114 171 3.69e-16 77.4
Msa0588710 AT1G69310.4 57.895 76 32 0 318 393 128 203 1.00e-24 104
Msa0588710 AT1G69310.4 57.971 69 28 1 173 241 136 203 1.13e-17 84.0
Msa0588710 AT1G69310.2 57.895 76 32 0 318 393 128 203 1.00e-24 104
Msa0588710 AT1G69310.2 57.971 69 28 1 173 241 136 203 1.13e-17 84.0
Msa0588710 AT1G69310.1 57.895 76 32 0 318 393 128 203 1.00e-24 104
Msa0588710 AT1G69310.1 57.971 69 28 1 173 241 136 203 1.13e-17 84.0
Msa0588710 AT2G47260.1 49.057 106 50 2 321 422 158 263 1.08e-24 105
Msa0588710 AT2G47260.1 51.316 76 36 1 173 248 163 237 3.25e-16 80.5
Msa0588710 AT4G04450.2 41.985 131 67 2 319 448 180 302 1.68e-24 106
Msa0588710 AT4G04450.2 48.333 60 30 1 186 244 199 258 6.96e-14 73.9
Msa0588710 AT5G64810.1 59.155 71 29 0 324 394 97 167 2.31e-24 100
Msa0588710 AT5G64810.1 36.364 121 73 3 125 241 46 166 2.89e-15 74.7
Msa0588710 AT4G04450.1 41.985 131 67 2 319 448 274 396 6.83e-24 105
Msa0588710 AT4G04450.1 48.333 60 30 1 186 244 293 352 1.22e-13 73.6
Msa0588710 AT5G15130.2 51.899 79 37 1 320 397 168 246 3.35e-23 103
Msa0588710 AT5G15130.2 48.333 60 30 1 186 244 186 245 2.31e-12 69.7
Msa0588710 AT5G15130.1 51.899 79 37 1 320 397 210 288 5.05e-23 102
Msa0588710 AT5G15130.1 48.333 60 30 1 186 244 228 287 2.75e-12 69.3
Msa0588710 AT2G46130.1 56.579 76 33 0 318 393 11 86 5.08e-23 94.4
Msa0588710 AT2G46130.1 55.172 58 26 0 185 242 30 87 3.11e-17 77.8
Msa0588710 AT1G68150.1 51.899 79 37 1 321 398 219 297 8.90e-23 100
Msa0588710 AT1G68150.1 51.667 60 28 1 186 244 236 295 1.99e-14 75.5
Msa0588710 AT1G62300.1 53.165 79 36 1 319 396 294 372 1.07e-22 101
Msa0588710 AT1G62300.1 40.206 97 47 5 157 244 278 372 4.70e-13 72.0
Msa0588710 AT4G22070.4 53.165 79 36 1 319 396 279 357 1.53e-22 101
Msa0588710 AT4G22070.4 48.333 60 30 1 186 244 298 357 1.56e-12 70.1
Msa0588710 AT4G22070.3 53.165 79 36 1 319 396 279 357 1.53e-22 101
Msa0588710 AT4G22070.3 48.333 60 30 1 186 244 298 357 1.56e-12 70.1
Msa0588710 AT4G22070.2 53.165 79 36 1 319 396 279 357 1.53e-22 101
Msa0588710 AT4G22070.2 48.333 60 30 1 186 244 298 357 1.56e-12 70.1
Msa0588710 AT4G22070.1 53.165 79 36 1 319 396 279 357 1.53e-22 101
Msa0588710 AT4G22070.1 48.333 60 30 1 186 244 298 357 1.56e-12 70.1
Msa0588710 AT1G18860.1 53.846 78 35 1 320 396 222 299 3.38e-22 100
Msa0588710 AT1G18860.1 48.333 60 30 1 186 244 240 299 8.64e-12 67.8
Msa0588710 AT3G62340.1 57.143 77 33 0 321 397 102 178 1.59e-21 94.7
Msa0588710 AT3G62340.1 47.826 69 36 0 185 253 118 186 1.43e-15 77.4
Msa0588710 AT4G31550.1 50.538 93 41 3 318 408 230 319 8.83e-21 93.6
Msa0588710 AT4G31550.1 52.632 57 26 1 186 241 247 303 9.37e-13 69.7
Msa0588710 AT4G31550.2 50.538 93 41 3 318 408 229 318 1.00e-20 93.6
Msa0588710 AT4G31550.2 52.632 57 26 1 186 241 246 302 1.05e-12 69.7
Msa0588710 AT4G01720.1 50.649 77 37 1 321 396 223 299 3.33e-20 94.0
Msa0588710 AT4G01720.1 35.577 104 64 2 142 244 198 299 4.37e-14 75.1
Msa0588710 AT2G23320.1 49.367 79 36 2 318 395 224 299 4.89e-20 91.3
Msa0588710 AT2G23320.1 50.877 57 27 1 186 241 241 297 6.23e-13 70.1
Msa0588710 AT1G69310.3 53.947 76 31 1 318 393 128 199 5.10e-20 90.5
Msa0588710 AT1G69310.3 57.895 57 20 1 185 241 147 199 4.09e-13 70.1
Msa0588710 AT4G24240.1 53.333 75 34 1 324 397 268 342 6.31e-20 91.7
Msa0588710 AT2G24570.1 54.545 77 31 2 318 393 227 300 3.28e-19 89.0
Msa0588710 AT2G24570.1 52.632 57 26 1 186 241 244 300 1.28e-12 69.3
Msa0588710 AT5G43290.1 63.158 57 21 0 185 241 114 170 7.85e-19 87.0
Msa0588710 AT5G43290.1 55.932 59 26 0 335 393 112 170 1.92e-15 77.0
Msa0588710 AT5G28650.1 50.649 77 34 2 318 393 246 319 1.08e-18 87.4
Msa0588710 AT5G28650.1 47.368 57 29 1 186 241 263 319 3.23e-11 65.1
Msa0588710 AT1G80840.1 38.136 118 57 3 335 436 144 261 1.31e-18 87.0
Msa0588710 AT1G80840.1 50.820 61 29 1 185 244 146 206 1.35e-15 77.8
Msa0588710 AT2G46130.2 52.632 76 32 1 318 393 11 82 2.20e-18 80.9
Msa0588710 AT2G46130.2 50.000 58 25 1 185 242 30 83 1.09e-12 64.7
Msa0588710 AT2G21900.1 50.000 74 34 1 326 396 95 168 2.74e-18 83.6
Msa0588710 AT2G21900.1 45.455 66 36 0 179 244 103 168 5.41e-16 77.0
Msa0588710 AT3G04670.1 50.649 77 34 2 318 393 246 319 2.88e-18 86.3
Msa0588710 AT3G04670.1 49.123 57 28 1 186 241 263 319 6.60e-12 67.0
Msa0588710 AT2G30590.1 35.333 150 82 4 259 393 221 370 7.63e-18 85.9
Msa0588710 AT2G30590.1 50.847 59 28 1 186 243 314 372 9.66e-13 70.1
Msa0588710 AT4G23550.1 43.678 87 48 1 326 411 129 215 2.99e-17 83.2
Msa0588710 AT1G69810.2 35.659 129 67 3 285 397 79 207 3.65e-17 83.2
Msa0588710 AT1G69810.1 35.659 129 67 3 285 397 137 265 5.74e-17 83.2
Msa0588710 AT2G25000.2 48.387 62 31 1 336 396 102 163 3.39e-16 78.2
Msa0588710 AT2G25000.2 37.500 88 49 2 164 250 87 169 1.34e-13 70.9
Msa0588710 AT2G25000.4 48.387 62 31 1 336 396 102 163 3.39e-16 78.2
Msa0588710 AT2G25000.4 37.500 88 49 2 164 250 87 169 1.34e-13 70.9
Msa0588710 AT2G25000.3 48.387 62 31 1 336 396 124 185 5.30e-16 78.2
Msa0588710 AT2G25000.3 37.931 87 48 2 165 250 110 191 1.52e-13 70.9
Msa0588710 AT4G31800.2 48.387 62 31 1 336 396 110 171 7.91e-16 77.4
Msa0588710 AT4G31800.2 42.254 71 40 1 185 254 111 181 8.93e-14 71.6
Msa0588710 AT2G25000.1 48.387 62 31 1 336 396 145 206 8.05e-16 78.2
Msa0588710 AT2G25000.1 37.931 87 48 2 165 250 131 212 2.86e-13 70.5
Msa0588710 AT4G31800.1 48.387 62 31 1 336 396 175 236 1.19e-15 78.2
Msa0588710 AT4G31800.1 42.254 71 40 1 185 254 176 246 1.33e-13 72.0
Msa0588710 AT1G29280.1 50.820 61 29 1 338 397 75 135 6.32e-15 75.1
Msa0588710 AT1G29280.1 33.858 127 54 3 154 250 14 140 1.68e-13 70.9
Msa0588710 AT4G01250.1 52.381 63 29 1 338 399 129 191 7.64e-15 75.5
Msa0588710 AT4G01250.1 37.500 88 41 2 171 244 101 188 3.79e-12 67.4
Msa0588710 AT5G52830.1 40.426 94 54 2 318 410 147 239 7.88e-15 76.3
Msa0588710 AT5G52830.1 48.333 60 30 1 186 244 166 225 2.82e-11 65.5
Msa0588710 AT1G30650.1 49.206 63 31 1 338 399 218 280 9.19e-14 73.6
Msa0588710 AT1G30650.1 44.595 74 40 1 172 244 204 277 5.49e-12 68.2
Msa0588710 AT2G34830.1 40.741 81 47 1 320 399 198 278 1.07e-13 73.6
Msa0588710 AT2G34830.1 44.444 81 42 2 172 251 202 280 1.99e-12 69.3
Msa0588710 AT2G34830.2 40.741 81 47 1 320 399 207 287 1.11e-13 73.6
Msa0588710 AT2G34830.2 44.444 81 42 2 172 251 211 289 1.96e-12 69.7
Msa0588710 AT3G01080.3 53.968 63 28 1 337 399 205 266 1.53e-13 72.0
Msa0588710 AT3G58710.1 50.000 60 29 1 338 396 72 131 8.36e-13 69.3
Msa0588710 AT3G58710.1 48.333 60 30 1 186 244 72 131 8.34e-11 63.2
Msa0588710 AT3G58710.2 45.946 74 33 2 338 410 71 138 8.74e-13 68.9
Msa0588710 AT3G58710.2 48.333 60 30 1 186 244 71 130 8.73e-11 63.2
Msa0588710 AT5G45050.2 44.186 86 34 3 321 399 1137 1215 8.50e-12 68.6
Msa0588710 AT5G45050.1 44.186 86 34 3 321 399 1165 1243 8.54e-12 68.6
Msa0588710 AT5G45050.4 44.186 86 34 3 321 399 1026 1104 8.91e-12 68.6
Msa0588710 AT5G24110.1 31.915 141 89 4 324 458 99 238 1.05e-11 66.2
Msa0588710 AT5G45260.1 42.683 82 42 2 184 262 1207 1286 1.23e-11 67.8

Find 73 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGGCTTCTGATATTTCTT+TGG 0.193955 4_2:+11167709 Msa0588710:CDS
TTCTTCTTCATTGAGCAAAT+TGG 0.201399 4_2:-11167548 None:intergenic
GTGCACTTGTAATAACTTCT+TGG 0.242130 4_2:-11167521 None:intergenic
GTTCCTTCAAATGATAAATT+TGG 0.257363 4_2:-11167341 None:intergenic
TTGTTAAAATAACTAGAATT+AGG 0.275940 4_2:-11167398 None:intergenic
GAAGAAAGTTGAAAGGTCTT+TGG 0.287157 4_2:+11167565 Msa0588710:CDS
GTACTGATCTTACCATCTTT+TGG 0.288931 4_2:-11167804 None:intergenic
GTCACTGCTGAAGGCCTTAC+AGG 0.293516 4_2:-11168636 None:intergenic
ATGGCTTCTGATATTTCTTT+GGG 0.307243 4_2:+11167710 Msa0588710:CDS
GGATATAGGTGGAGGAAATA+TGG 0.321679 4_2:+11168147 Msa0588710:CDS
TTCATCATGCAACAACTCTA+TGG 0.324697 4_2:+11167691 Msa0588710:CDS
GGATACAGGTGGAGAAAATA+TGG 0.326573 4_2:+11167470 Msa0588710:CDS
TATGGACAGAAAGTTGTTAA+AGG 0.332389 4_2:+11168165 Msa0588710:CDS
CTGATGCTTTGCACAGTAGA+AGG 0.348947 4_2:-11166511 None:intergenic
AATTATGCATACCTTGGGTT+TGG 0.351359 4_2:-11168192 None:intergenic
AATGTGTCCTGTGTCTTTAG+TGG 0.354616 4_2:-11167293 None:intergenic
CAACCAAATTTATCATTTGA+AGG 0.369792 4_2:+11167338 Msa0588710:CDS
AGCCGAGTATTGTTCCGAAT+TGG 0.406866 4_2:-11168796 None:intergenic
ATTACTCAAATAGTATATAA+AGG 0.407318 4_2:+11167599 Msa0588710:CDS
CTAATTCCTTGCTATGCTGT+TGG 0.408497 4_2:-11166534 None:intergenic
TTCTGATATTTCTTTGGGAG+AGG 0.411159 4_2:+11167715 Msa0588710:CDS
ATATTCTTGATGATGGATAT+AGG 0.416334 4_2:+11168133 Msa0588710:CDS
AATTGGTTCAAATACCAATT+CGG 0.428619 4_2:+11168782 Msa0588710:CDS
GTTGAAAGGTCTTTGGATGA+TGG 0.432736 4_2:+11167572 Msa0588710:CDS
GAAATTGATATTCTTGATGA+TGG 0.452886 4_2:+11168126 Msa0588710:CDS
TACATTAGAAGAAGAAAGAA+AGG 0.465181 4_2:-11166026 None:intergenic
TGGAGGAGATTATGATGACT+TGG 0.466240 4_2:+11167772 Msa0588710:CDS
GGTTCATTTGTATAAGATGA+AGG 0.475369 4_2:-11166490 None:intergenic
TTAGAAGAAGAAAGAAAGGA+AGG 0.477240 4_2:-11166022 None:intergenic
AGAAGGGTGTAGAACTGTTA+AGG 0.478856 4_2:+11168074 Msa0588710:CDS
GGTGATGTTATTGTTTGTGT+TGG 0.478952 4_2:-11165858 None:intergenic
TTATGATGACTTGGGAATAG+AGG 0.481749 4_2:+11167781 Msa0588710:CDS
GCAGTGATCACAACATATGA+AGG 0.483193 4_2:+11168519 Msa0588710:CDS
CAAAGAAAATCAGAAGAAGA+TGG 0.492604 4_2:+11167449 Msa0588710:CDS
CATGTAATGTTACACCTGTA+AGG 0.493352 4_2:+11168622 Msa0588710:CDS
AATCAGAAGAAGATGGATAC+AGG 0.502233 4_2:+11167456 Msa0588710:CDS
GGTGGAAAATCAGAATAAGA+AGG 0.506570 4_2:-11165968 None:intergenic
GTAGTTTGAACCACAACTCT+AGG 0.508298 4_2:-11168099 None:intergenic
GGTGAATTCAATAACTCTGA+TGG 0.513179 4_2:-11166001 None:intergenic
TACCAATTCGGAACAATACT+CGG 0.514905 4_2:+11168794 Msa0588710:CDS
AGCTATTCTTATTCCACAGA+AGG 0.516161 4_2:+11168057 Msa0588710:CDS
AACTCTGATGGGCTGAAACC+AGG 0.529891 4_2:-11165989 None:intergenic
GGAGGAGATTATGATGACTT+GGG 0.531440 4_2:+11167773 Msa0588710:CDS
CTCTTCCTAGAGGTACATCA+TGG 0.532042 4_2:-11168551 None:intergenic
TTCCACAAGTATGTTTCAAG+TGG 0.546004 4_2:+11166624 Msa0588710:CDS
GTGAATTCAATAACTCTGAT+GGG 0.548615 4_2:-11166000 None:intergenic
AAACAATAACATCACCACCT+TGG 0.561789 4_2:+11165865 Msa0588710:CDS
TTGTACACTGAGGCTTAGGA+TGG 0.563371 4_2:-11167631 None:intergenic
CATGATGTACCTCTAGGAAG+AGG 0.569832 4_2:+11168552 Msa0588710:CDS
AACAAAGTTAGCAATATCCA+AGG 0.571515 4_2:-11165882 None:intergenic
GAATAATTAGTCACTGCTGA+AGG 0.572182 4_2:-11168645 None:intergenic
TATGGAGAGAAACAAGTGAA+AGG 0.574260 4_2:+11167488 Msa0588710:CDS
TACCACTTGAAACATACTTG+TGG 0.577939 4_2:-11166626 None:intergenic
GTGGAAAATCAGAATAAGAA+GGG 0.578293 4_2:-11165967 None:intergenic
TTGATGATGGATATAGGTGG+AGG 0.585484 4_2:+11168139 Msa0588710:CDS
TGGGAATAGAGGCCAAAAGA+TGG 0.587508 4_2:+11167792 Msa0588710:CDS
AACAGTTCTACACCCTTCTG+TGG 0.594037 4_2:-11168070 None:intergenic
TACTACAAATGTGTAATCCA+AGG 0.596332 4_2:+11168450 Msa0588710:CDS
CATAACCATGATGTACCTCT+AGG 0.598674 4_2:+11168546 Msa0588710:CDS
GCTATTCTTATTCCACAGAA+GGG 0.600897 4_2:+11168058 Msa0588710:CDS
CAGTGATCACAACATATGAA+GGG 0.610831 4_2:+11168520 Msa0588710:CDS
GGAAGAACCACTAAAGACAC+AGG 0.628554 4_2:+11167286 Msa0588710:intron
CATCAGCCAACAGCATAGCA+AGG 0.634481 4_2:+11166528 Msa0588710:CDS
CAATGAAGAAGAAAGTTGAA+AGG 0.635399 4_2:+11167558 Msa0588710:CDS
TTAAAGGAAATCCAAACCCA+AGG 0.636841 4_2:+11168181 Msa0588710:CDS
TGTTAAGGAACCTAGAGTTG+TGG 0.637272 4_2:+11168089 Msa0588710:CDS
CTTGAAATTCCTCTTCCTAG+AGG 0.637467 4_2:-11168561 None:intergenic
CAGAAGAAGATGGATACAGG+TGG 0.640643 4_2:+11167459 Msa0588710:CDS
GAGTTGTTGCATGATGAAGA+AGG 0.644778 4_2:-11167686 None:intergenic
AGATTGAAAGAGATCATGCA+TGG 0.650797 4_2:-11166602 None:intergenic
TTCTTGATGATGGATATAGG+TGG 0.671599 4_2:+11168136 Msa0588710:CDS
TCTGATGGGCTGAAACCAGG+TGG 0.672247 4_2:-11165986 None:intergenic
AAAGTTAGCAATATCCAAGG+TGG 0.700473 4_2:-11165879 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTTTTAAGTAAAAGTTA+TGG - chr4_2:11166670-11166689 None:intergenic 15.0%
!! TTTCATTAATGATAATATGT+TGG + chr4_2:11167026-11167045 Msa0588710:intron 15.0%
!! TTGTTAAAATAACTAGAATT+AGG - chr4_2:11167401-11167420 None:intergenic 15.0%
!! ATTACTCAAATAGTATATAA+AGG + chr4_2:11167599-11167618 Msa0588710:CDS 15.0%
!!! TTTTAGATTCATTCAATAAA+TGG + chr4_2:11167861-11167880 Msa0588710:intron 15.0%
!! CCTCAAAATTCTTTATATTA+CGG + chr4_2:11166270-11166289 Msa0588710:intron 20.0%
!!! AAACATTTTTAAAGTTGATG+TGG + chr4_2:11166971-11166990 Msa0588710:intron 20.0%
!! TCATTAATGAAATGCAATTA+AGG - chr4_2:11167018-11167037 None:intergenic 20.0%
!! TATCAATGAAAATGTGAATA+CGG + chr4_2:11167062-11167081 Msa0588710:intron 20.0%
!! TAAATCAACCTCAAAAATAT+TGG - chr4_2:11167982-11168001 None:intergenic 20.0%
!! TTTATGATTCTCATTATTGT+AGG + chr4_2:11168013-11168032 Msa0588710:intron 20.0%
!! AAGTTATTATCATATAAGGT+TGG - chr4_2:11168404-11168423 None:intergenic 20.0%
!! GAACAAGTTATTATCATATA+AGG - chr4_2:11168408-11168427 None:intergenic 20.0%
! TACATTAGAAGAAGAAAGAA+AGG - chr4_2:11166029-11166048 None:intergenic 25.0%
!! GTCCTAATCATGATTTTAAA+TGG + chr4_2:11166113-11166132 Msa0588710:intron 25.0%
!! CTCCATTTAAAATCATGATT+AGG - chr4_2:11166118-11166137 None:intergenic 25.0%
!! CTAATCATGATTTTAAATGG+AGG + chr4_2:11166116-11166135 Msa0588710:intron 25.0%
!! ATGAGTATTTTGTGATTAAG+AGG - chr4_2:11166192-11166211 None:intergenic 25.0%
!! CCGTAATATAAAGAATTTTG+AGG - chr4_2:11166273-11166292 None:intergenic 25.0%
!! CAAGATAGTTTGAATAGTTT+TGG + chr4_2:11166870-11166889 Msa0588710:intron 25.0%
! ATCAATGAAAATGTGAATAC+GGG + chr4_2:11167063-11167082 Msa0588710:intron 25.0%
! AATAAATCACACATTGTTTG+TGG - chr4_2:11167209-11167228 None:intergenic 25.0%
! CAACCAAATTTATCATTTGA+AGG + chr4_2:11167338-11167357 Msa0588710:CDS 25.0%
! GTTCCTTCAAATGATAAATT+TGG - chr4_2:11167344-11167363 None:intergenic 25.0%
!!! TCTAGTTATTTTAACAACAC+TGG + chr4_2:11167404-11167423 Msa0588710:CDS 25.0%
! CATTCAATAAATGGTATATG+TGG + chr4_2:11167870-11167889 Msa0588710:intron 25.0%
!!! ATGAAGTACCAATATTTTTG+AGG + chr4_2:11167971-11167990 Msa0588710:intron 25.0%
! GAAATTGATATTCTTGATGA+TGG + chr4_2:11168126-11168145 Msa0588710:CDS 25.0%
!!! ATATTCTTGATGATGGATAT+AGG + chr4_2:11168133-11168152 Msa0588710:CDS 25.0%
! ATTTGAATTATGCATACCTT+GGG - chr4_2:11168200-11168219 None:intergenic 25.0%
! AATTTGAATTATGCATACCT+TGG - chr4_2:11168201-11168220 None:intergenic 25.0%
! GGTATGCATAATTCAAATTA+TGG + chr4_2:11168202-11168221 Msa0588710:intron 25.0%
!!! AAACCACTGTTATTTTTAGA+CGG + chr4_2:11168341-11168360 Msa0588710:intron 25.0%
!! AATTGGTTCAAATACCAATT+CGG + chr4_2:11168782-11168801 Msa0588710:CDS 25.0%
AACAAAGTTAGCAATATCCA+AGG - chr4_2:11165885-11165904 None:intergenic 30.0%
!!! TCTTCATGAGTTTTTAGTTG+AGG - chr4_2:11165917-11165936 None:intergenic 30.0%
GTGGAAAATCAGAATAAGAA+GGG - chr4_2:11165970-11165989 None:intergenic 30.0%
GTGAATTCAATAACTCTGAT+GGG - chr4_2:11166003-11166022 None:intergenic 30.0%
TTAGAAGAAGAAAGAAAGGA+AGG - chr4_2:11166025-11166044 None:intergenic 30.0%
TTGTGACAAAATATGACTGA+TGG + chr4_2:11166213-11166232 Msa0588710:intron 30.0%
TGTGACAAAATATGACTGAT+GGG + chr4_2:11166214-11166233 Msa0588710:intron 30.0%
GGTTCATTTGTATAAGATGA+AGG - chr4_2:11166493-11166512 None:intergenic 30.0%
!! TGTTTTTGTGTTTGGAAAGA+GGG - chr4_2:11166580-11166599 None:intergenic 30.0%
TTGATGTGGCTAACATTAAA+CGG + chr4_2:11166985-11167004 Msa0588710:intron 30.0%
TGTGTGATTTATTGATGCTT+TGG + chr4_2:11167216-11167235 Msa0588710:intron 30.0%
AATACTTGTTCAACTTGAAC+AGG + chr4_2:11167265-11167284 Msa0588710:intron 30.0%
CAAAGAAAATCAGAAGAAGA+TGG + chr4_2:11167449-11167468 Msa0588710:CDS 30.0%
TTCTTCTTCATTGAGCAAAT+TGG - chr4_2:11167551-11167570 None:intergenic 30.0%
CAATGAAGAAGAAAGTTGAA+AGG + chr4_2:11167558-11167577 Msa0588710:CDS 30.0%
TATGGCTTCTGATATTTCTT+TGG + chr4_2:11167709-11167728 Msa0588710:CDS 30.0%
ATGGCTTCTGATATTTCTTT+GGG + chr4_2:11167710-11167729 Msa0588710:CDS 30.0%
!!! ACATCACAAACTAGTTTTTC+TGG + chr4_2:11167752-11167771 Msa0588710:CDS 30.0%
GATTCTCATTATTGTAGGAA+AGG + chr4_2:11168018-11168037 Msa0588710:intron 30.0%
TATGGACAGAAAGTTGTTAA+AGG + chr4_2:11168165-11168184 Msa0588710:CDS 30.0%
!! GTTCAAAATATTGTTTCTGC+AGG + chr4_2:11168424-11168443 Msa0588710:intron 30.0%
TACTACAAATGTGTAATCCA+AGG + chr4_2:11168450-11168469 Msa0588710:CDS 30.0%
! TGTTCTTGATTTTCAGAAGT+TGG - chr4_2:11168714-11168733 None:intergenic 30.0%
!! GATGAATTCTAGAAGCTTTT+TGG + chr4_2:11168752-11168771 Msa0588710:CDS 30.0%
GGTGATGTTATTGTTTGTGT+TGG - chr4_2:11165861-11165880 None:intergenic 35.0%
AAACAATAACATCACCACCT+TGG + chr4_2:11165865-11165884 Msa0588710:CDS 35.0%
AAAGTTAGCAATATCCAAGG+TGG - chr4_2:11165882-11165901 None:intergenic 35.0%
GGTGGAAAATCAGAATAAGA+AGG - chr4_2:11165971-11165990 None:intergenic 35.0%
! TCTTATTCTGATTTTCCACC+TGG + chr4_2:11165971-11165990 Msa0588710:CDS 35.0%
GGTGAATTCAATAACTCTGA+TGG - chr4_2:11166004-11166023 None:intergenic 35.0%
GTGACAAAATATGACTGATG+GGG + chr4_2:11166215-11166234 Msa0588710:intron 35.0%
ACGGCTGCAATTATAAATGA+TGG + chr4_2:11166289-11166308 Msa0588710:intron 35.0%
TCAAATGCAACTTATGCATG+TGG + chr4_2:11166343-11166362 Msa0588710:intron 35.0%
! GTCTTTTGCAACTTTAGTGT+TGG + chr4_2:11166403-11166422 Msa0588710:intron 35.0%
!!! TGCAACTTTAGTGTTGGTTT+TGG + chr4_2:11166409-11166428 Msa0588710:intron 35.0%
!!! CTGTTTTTGTGTTTGGAAAG+AGG - chr4_2:11166581-11166600 None:intergenic 35.0%
AGATTGAAAGAGATCATGCA+TGG - chr4_2:11166605-11166624 None:intergenic 35.0%
TTCCACAAGTATGTTTCAAG+TGG + chr4_2:11166624-11166643 Msa0588710:CDS 35.0%
TACCACTTGAAACATACTTG+TGG - chr4_2:11166629-11166648 None:intergenic 35.0%
TATGCTGATCTTGACTTTCT+TGG + chr4_2:11166718-11166737 Msa0588710:intron 35.0%
TGTCACACACTTGCATTTAA+TGG + chr4_2:11166769-11166788 Msa0588710:intron 35.0%
! ATGTTTGACTTAGTCAACTG+AGG - chr4_2:11166922-11166941 None:intergenic 35.0%
AATCAGAAGAAGATGGATAC+AGG + chr4_2:11167456-11167475 Msa0588710:CDS 35.0%
TATGGAGAGAAACAAGTGAA+AGG + chr4_2:11167488-11167507 Msa0588710:CDS 35.0%
GTGCACTTGTAATAACTTCT+TGG - chr4_2:11167524-11167543 None:intergenic 35.0%
GAAGAAAGTTGAAAGGTCTT+TGG + chr4_2:11167565-11167584 Msa0588710:CDS 35.0%
TTCATCATGCAACAACTCTA+TGG + chr4_2:11167691-11167710 Msa0588710:CDS 35.0%
! TTCTGATATTTCTTTGGGAG+AGG + chr4_2:11167715-11167734 Msa0588710:CDS 35.0%
!!! TCACAAACTAGTTTTTCTGG+AGG + chr4_2:11167755-11167774 Msa0588710:CDS 35.0%
! TTATGATGACTTGGGAATAG+AGG + chr4_2:11167781-11167800 Msa0588710:CDS 35.0%
!! GTACTGATCTTACCATCTTT+TGG - chr4_2:11167807-11167826 None:intergenic 35.0%
TGCTTATAATAGTGACCAGA+GGG - chr4_2:11167831-11167850 None:intergenic 35.0%
TTGCTTATAATAGTGACCAG+AGG - chr4_2:11167832-11167851 None:intergenic 35.0%
GGTCACTATTATAAACCAGA+GGG - chr4_2:11167912-11167931 None:intergenic 35.0%
! CTCTGGTTTATAATAGTGAC+CGG + chr4_2:11167911-11167930 Msa0588710:intron 35.0%
CACAAAAAAAATACACCCTC+CGG - chr4_2:11167933-11167952 None:intergenic 35.0%
AGCTATTCTTATTCCACAGA+AGG + chr4_2:11168057-11168076 Msa0588710:CDS 35.0%
GCTATTCTTATTCCACAGAA+GGG + chr4_2:11168058-11168077 Msa0588710:CDS 35.0%
!! TTCTTGATGATGGATATAGG+TGG + chr4_2:11168136-11168155 Msa0588710:CDS 35.0%
TTAAAGGAAATCCAAACCCA+AGG + chr4_2:11168181-11168200 Msa0588710:CDS 35.0%
AATTATGCATACCTTGGGTT+TGG - chr4_2:11168195-11168214 None:intergenic 35.0%
!!! CACTGTTATTTTTAGACGGA+GGG + chr4_2:11168345-11168364 Msa0588710:intron 35.0%
CAGTGATCACAACATATGAA+GGG + chr4_2:11168520-11168539 Msa0588710:CDS 35.0%
CATGTAATGTTACACCTGTA+AGG + chr4_2:11168622-11168641 Msa0588710:CDS 35.0%
GAATAATTAGTCACTGCTGA+AGG - chr4_2:11168648-11168667 None:intergenic 35.0%
! AGCTTTTTGGACAGATCAAT+TGG + chr4_2:11168765-11168784 Msa0588710:CDS 35.0%
TACCAATTCGGAACAATACT+CGG + chr4_2:11168794-11168813 Msa0588710:CDS 35.0%
CATAGTGACCATACCTAGTT+CGG - chr4_2:11166155-11166174 None:intergenic 40.0%
! CTAATTCCTTGCTATGCTGT+TGG - chr4_2:11166537-11166556 None:intergenic 40.0%
!!! GCATGGTCTGTTTTTGTGTT+TGG - chr4_2:11166588-11166607 None:intergenic 40.0%
TAGAAGACAAGTCGATGAGA+CGG - chr4_2:11167122-11167141 None:intergenic 40.0%
AATGTGTCCTGTGTCTTTAG+TGG - chr4_2:11167296-11167315 None:intergenic 40.0%
GGATACAGGTGGAGAAAATA+TGG + chr4_2:11167470-11167489 Msa0588710:CDS 40.0%
GTTGAAAGGTCTTTGGATGA+TGG + chr4_2:11167572-11167591 Msa0588710:CDS 40.0%
! CTTTTTGTACACTGAGGCTT+AGG - chr4_2:11167638-11167657 None:intergenic 40.0%
! GCTCTTCTTTTTGTACACTG+AGG - chr4_2:11167644-11167663 None:intergenic 40.0%
GAGTTGTTGCATGATGAAGA+AGG - chr4_2:11167689-11167708 None:intergenic 40.0%
TGGAGGAGATTATGATGACT+TGG + chr4_2:11167772-11167791 Msa0588710:CDS 40.0%
GGAGGAGATTATGATGACTT+GGG + chr4_2:11167773-11167792 Msa0588710:CDS 40.0%
CACTATTATAAACCAGAGGG+TGG - chr4_2:11167909-11167928 None:intergenic 40.0%
CGGTCACTATTATAAACCAG+AGG - chr4_2:11167913-11167932 None:intergenic 40.0%
TGGTTTATAATAGTGACCGG+AGG + chr4_2:11167914-11167933 Msa0588710:intron 40.0%
GGTTTATAATAGTGACCGGA+GGG + chr4_2:11167915-11167934 Msa0588710:intron 40.0%
! AGAAGGGTGTAGAACTGTTA+AGG + chr4_2:11168074-11168093 Msa0588710:CDS 40.0%
TGTTAAGGAACCTAGAGTTG+TGG + chr4_2:11168089-11168108 Msa0588710:CDS 40.0%
GTAGTTTGAACCACAACTCT+AGG - chr4_2:11168102-11168121 None:intergenic 40.0%
!! TTGATGATGGATATAGGTGG+AGG + chr4_2:11168139-11168158 Msa0588710:CDS 40.0%
GGATATAGGTGGAGGAAATA+TGG + chr4_2:11168147-11168166 Msa0588710:CDS 40.0%
CCTCCGTCTAAAAATAACAG+TGG - chr4_2:11168347-11168366 None:intergenic 40.0%
!!! CCACTGTTATTTTTAGACGG+AGG + chr4_2:11168344-11168363 Msa0588710:intron 40.0%
! GTTTTCTCACAGTACAACCT+TGG - chr4_2:11168470-11168489 None:intergenic 40.0%
GCAGTGATCACAACATATGA+AGG + chr4_2:11168519-11168538 Msa0588710:CDS 40.0%
CATAACCATGATGTACCTCT+AGG + chr4_2:11168546-11168565 Msa0588710:CDS 40.0%
CTTGAAATTCCTCTTCCTAG+AGG - chr4_2:11168564-11168583 None:intergenic 40.0%
CTGTTGTTACACTCCGAACT+AGG + chr4_2:11166139-11166158 Msa0588710:intron 45.0%
GTTACACTCCGAACTAGGTA+TGG + chr4_2:11166144-11166163 Msa0588710:intron 45.0%
CTGATGCTTTGCACAGTAGA+AGG - chr4_2:11166514-11166533 None:intergenic 45.0%
GGAAGAACCACTAAAGACAC+AGG + chr4_2:11167286-11167305 Msa0588710:intron 45.0%
CAGAAGAAGATGGATACAGG+TGG + chr4_2:11167459-11167478 Msa0588710:CDS 45.0%
TTGTACACTGAGGCTTAGGA+TGG - chr4_2:11167634-11167653 None:intergenic 45.0%
TGGGAATAGAGGCCAAAAGA+TGG + chr4_2:11167792-11167811 Msa0588710:CDS 45.0%
TTATAACGTAGTCCACCCTC+TGG + chr4_2:11167894-11167913 Msa0588710:intron 45.0%
AACAGTTCTACACCCTTCTG+TGG - chr4_2:11168073-11168092 None:intergenic 45.0%
!! ACGGAGGGAGTACTTAACTT+CGG + chr4_2:11168360-11168379 Msa0588710:intron 45.0%
! CTCTTCCTAGAGGTACATCA+TGG - chr4_2:11168554-11168573 None:intergenic 45.0%
! CATGATGTACCTCTAGGAAG+AGG + chr4_2:11168552-11168571 Msa0588710:CDS 45.0%
! AGCCGAGTATTGTTCCGAAT+TGG - chr4_2:11168799-11168818 None:intergenic 45.0%
!! AACTCTGATGGGCTGAAACC+AGG - chr4_2:11165992-11166011 None:intergenic 50.0%
CATCAGCCAACAGCATAGCA+AGG + chr4_2:11166528-11166547 Msa0588710:CDS 50.0%
!! TCTGATGGGCTGAAACCAGG+TGG - chr4_2:11165989-11166008 None:intergenic 55.0%
GGTAAGATCAGTACGCCCTC+TGG + chr4_2:11167813-11167832 Msa0588710:intron 55.0%
GTCACTGCTGAAGGCCTTAC+AGG - chr4_2:11168639-11168658 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 11165830 11168863 11165830 ID=Msa0588710;Name=Msa0588710
chr4_2 mRNA 11165830 11168863 11165830 ID=Msa0588710-mRNA-1;Parent=Msa0588710;Name=Msa0588710-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.75|0|1|1|1|5|0|495
chr4_2 exon 11165830 11166045 11165830 ID=Msa0588710-mRNA-1:exon:3194;Parent=Msa0588710-mRNA-1
chr4_2 exon 11166487 11166645 11166487 ID=Msa0588710-mRNA-1:exon:3195;Parent=Msa0588710-mRNA-1
chr4_2 exon 11167287 11167813 11167287 ID=Msa0588710-mRNA-1:exon:3196;Parent=Msa0588710-mRNA-1
chr4_2 exon 11168035 11168202 11168035 ID=Msa0588710-mRNA-1:exon:3197;Parent=Msa0588710-mRNA-1
chr4_2 exon 11168446 11168863 11168446 ID=Msa0588710-mRNA-1:exon:3198;Parent=Msa0588710-mRNA-1
chr4_2 CDS 11165830 11166045 11165830 ID=Msa0588710-mRNA-1:cds;Parent=Msa0588710-mRNA-1
chr4_2 CDS 11166487 11166645 11166487 ID=Msa0588710-mRNA-1:cds;Parent=Msa0588710-mRNA-1
chr4_2 CDS 11167287 11167813 11167287 ID=Msa0588710-mRNA-1:cds;Parent=Msa0588710-mRNA-1
chr4_2 CDS 11168035 11168202 11168035 ID=Msa0588710-mRNA-1:cds;Parent=Msa0588710-mRNA-1
chr4_2 CDS 11168446 11168863 11168446 ID=Msa0588710-mRNA-1:cds;Parent=Msa0588710-mRNA-1
Gene Sequence

>Msa0588710

ATGTCTTTTAGTTTCAACAATCACTTTTCCAACACAAACAATAACATCACCACCTTGGATATTGCTAACTTTGTTGAAACTTCTCCTCAACTAAAAACTCATGAAGATGATCATTTTGCACTTGATGATGTAATTTACCCTTCTTATTCTGATTTTCCACCTGGTTTCAGCCCATCAGAGTTATTGAATTCACCTTCCTTTCTTTCTTCTTCTAATATTCCTTCATCTTATACAAATGAACCTTCTACTGTGCAAAGCATCAGCCAACAGCATAGCAAGGAATTAGAAGAGAGAAACTTCTCTGAGCCCTCTTTCCAAACACAAAAACAGACCATGCATGATCTCTTTCAATCTTCCACAAGTATGTTTCAAGTGGAAGAACCACTAAAGACACAGGACACATTGATATTCAATGAAACTACAAAGCAACCAAATTTATCATTTGAAGGAACAACAAAACATGAAGCACAAACAAATTCTTCAGCTCCTAATTCTAGTTATTTTAACAACACTGGTGCTTCTATGTCTAAAAGTGAACAAAGAAAATCAGAAGAAGATGGATACAGGTGGAGAAAATATGGAGAGAAACAAGTGAAAGGAAGTGAAAATCCAAGAAGTTATTACAAGTGCACTAATCCAATTTGCTCAATGAAGAAGAAAGTTGAAAGGTCTTTGGATGATGGACAAATTACTCAAATAGTATATAAAGGAAGTCATAACCATCCTAAGCCTCAGTGTACAAAAAGAAGAGCAAATTCTCAATATATTCATCAACCTTCTTCATCATGCAACAACTCTATGGCTTCTGATATTTCTTTGGGAGAGGATGATTTTGATCAAACATCACAAACTAGTTTTTCTGGAGGAGATTATGATGACTTGGGAATAGAGGCCAAAAGATGGAAAGGAGAGAATGAAAATGATAGCTATTCTTATTCCACAGAAGGGTGTAGAACTGTTAAGGAACCTAGAGTTGTGGTTCAAACTACAAGTGAAATTGATATTCTTGATGATGGATATAGGTGGAGGAAATATGGACAGAAAGTTGTTAAAGGAAATCCAAACCCAAGGAGCTACTACAAATGTGTAATCCAAGGTTGTACTGTGAGAAAACATGTTGAGAGAGCATCACATGATATTAAAGCAGTGATCACAACATATGAAGGGAAACATAACCATGATGTACCTCTAGGAAGAGGAATTTCAAGCAGTAGCATAAACAACAGAACTTCTCTTAACAACAATACATGTAATGTTACACCTGTAAGGCCTTCAGCAGTGACTAATTATTCTAGCTTAGCAAATTTTACAAATTCACTTCATGATTCAAAGCTACCAACTTCTGAAAATCAAGAACATTTTCAGCTTGACATGTTGATGAATTCTAGAAGCTTTTTGGACAGATCAATTGGTTCAAATACCAATTCGGAACAATACTCGGCTAAAGATGACTCATTCTTTCAATCTTTTGTATTGAAGAACTTTTAA
Protein sequence

>Msa0588710

MSFSFNNHFSNTNNNITTLDIANFVETSPQLKTHEDDHFALDDVIYPSYSDFPPGFSPSELLNSPSFLSSSNIPSSYTNEPSTVQSISQQHSKELEERNFSEPSFQTQKQTMHDLFQSSTSMFQVEEPLKTQDTLIFNETTKQPNLSFEGTTKHEAQTNSSAPNSSYFNNTGASMSKSEQRKSEEDGYRWRKYGEKQVKGSENPRSYYKCTNPICSMKKKVERSLDDGQITQIVYKGSHNHPKPQCTKRRANSQYIHQPSSSCNNSMASDISLGEDDFDQTSQTSFSGGDYDDLGIEAKRWKGENENDSYSYSTEGCRTVKEPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCVIQGCTVRKHVERASHDIKAVITTYEGKHNHDVPLGRGISSSSINNRTSLNNNTCNVTPVRPSAVTNYSSLANFTNSLHDSKLPTSENQEHFQLDMLMNSRSFLDRSIGSNTNSEQYSAKDDSFFQSFVLKNF*