AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0588670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0588670 MtrunA17_Chr4g0004911 93.373 498 20 5 1 490 1 493 0.0 900
Msa0588670 MtrunA17_Chr7g0243891 53.600 500 157 16 53 490 59 545 2.15e-150 440
Msa0588670 MtrunA17_Chr3g0106491 50.777 386 147 11 49 402 61 435 3.42e-105 323
Msa0588670 MtrunA17_Chr5g0432161 48.325 418 138 14 50 401 85 490 1.30e-101 316
Msa0588670 MtrunA17_Chr5g0445311 40.955 398 187 10 53 407 47 439 1.00e-76 250
Msa0588670 MtrunA17_Chr5g0418191 53.226 248 97 5 177 406 148 394 1.45e-74 241
Msa0588670 MtrunA17_Chr7g0218081 40.000 410 175 14 53 423 113 490 3.19e-74 243
Msa0588670 MtrunA17_Chr3g0101131 53.498 243 83 6 177 394 240 477 2.72e-73 242
Msa0588670 MtrunA17_Chr4g0042831 48.333 240 105 4 177 416 142 362 3.74e-70 228
Msa0588670 MtrunA17_Chr7g0249311 43.910 312 105 8 170 416 169 475 6.91e-65 222
Msa0588670 MtrunA17_Chr7g0249311 40.566 106 55 2 180 281 392 493 2.87e-16 81.6
Msa0588670 MtrunA17_Chr7g0263531 50.000 236 90 6 181 392 190 421 1.90e-63 212
Msa0588670 MtrunA17_Chr5g0447701 41.538 260 126 5 177 424 89 334 4.16e-50 176
Msa0588670 MtrunA17_Chr3g0079691 66.187 139 38 4 270 406 436 567 1.92e-48 177
Msa0588670 MtrunA17_Chr3g0079691 35.628 247 112 9 40 244 102 343 2.71e-26 112
Msa0588670 MtrunA17_Chr3g0079691 44.444 108 47 3 168 266 474 577 1.17e-17 86.3
Msa0588670 MtrunA17_Chr3g0079691 56.667 60 25 1 332 391 280 338 1.20e-13 73.6
Msa0588670 MtrunA17_Chr7g0249301 79.268 82 17 0 313 394 273 354 1.23e-41 152
Msa0588670 MtrunA17_Chr7g0249301 61.765 68 25 1 177 244 59 125 1.96e-20 93.2
Msa0588670 MtrunA17_Chr7g0249301 55.000 60 27 0 180 239 292 351 1.76e-15 78.2
Msa0588670 MtrunA17_Chr7g0249301 61.905 63 19 3 331 391 61 120 6.65e-14 73.2
Msa0588670 MtrunA17_Chr5g0447711 34.914 232 144 3 172 403 77 301 1.37e-38 142
Msa0588670 MtrunA17_Chr4g0074001 31.677 322 186 7 154 447 160 475 8.51e-38 145
Msa0588670 MtrunA17_Chr1g0188941 65.823 79 27 0 313 391 32 110 1.10e-32 120
Msa0588670 MtrunA17_Chr1g0188941 53.333 60 28 0 180 239 51 110 3.61e-17 77.4
Msa0588670 MtrunA17_Chr8g0335811 61.842 76 29 0 313 388 135 210 3.10e-28 112
Msa0588670 MtrunA17_Chr8g0335811 54.386 57 26 0 180 236 154 210 5.79e-15 74.3
Msa0588670 MtrunA17_Chr4g0051881 64.865 74 26 0 318 391 164 237 1.68e-27 112
Msa0588670 MtrunA17_Chr4g0051881 46.667 90 46 1 166 255 164 251 1.46e-19 89.7
Msa0588670 MtrunA17_Chr1g0150801 61.842 76 28 1 313 388 84 158 5.14e-27 106
Msa0588670 MtrunA17_Chr1g0150801 53.448 58 27 0 180 237 102 159 1.59e-15 74.3
Msa0588670 MtrunA17_Chr3g0129361 59.459 74 30 0 315 388 127 200 3.25e-26 106
Msa0588670 MtrunA17_Chr3g0129361 50.877 57 28 0 180 236 144 200 1.30e-14 73.2
Msa0588670 MtrunA17_Chr8g0383251 37.267 161 94 2 239 392 8 168 5.08e-26 104
Msa0588670 MtrunA17_Chr8g0383251 37.255 102 61 1 138 239 69 167 2.89e-16 77.0
Msa0588670 MtrunA17_Chr7g0270191 47.414 116 51 2 316 431 129 234 9.23e-26 107
Msa0588670 MtrunA17_Chr7g0270191 39.062 128 77 1 139 265 104 231 5.42e-21 93.2
Msa0588670 MtrunA17_Chr2g0294231 60.526 76 30 0 316 391 187 262 1.45e-25 108
Msa0588670 MtrunA17_Chr2g0294231 47.253 91 46 1 166 256 189 277 4.67e-21 94.7
Msa0588670 MtrunA17_Chr5g0443131 62.162 74 28 0 318 391 143 216 1.68e-25 106
Msa0588670 MtrunA17_Chr5g0443131 55.224 67 30 0 180 246 157 223 2.31e-17 82.8
Msa0588670 MtrunA17_Chr8g0386241 55.422 83 37 0 308 390 79 161 1.81e-25 102
Msa0588670 MtrunA17_Chr8g0386241 50.769 65 32 0 173 237 96 160 9.36e-16 75.5
Msa0588670 MtrunA17_Chr8g0383351 58.667 75 30 1 315 388 142 216 5.75e-25 103
Msa0588670 MtrunA17_Chr8g0383351 50.877 57 28 0 180 236 160 216 8.34e-15 73.9
Msa0588670 MtrunA17_Chr7g0224801 63.235 68 25 0 323 390 84 151 1.11e-24 100
Msa0588670 MtrunA17_Chr7g0224801 43.373 83 44 1 169 251 82 161 6.75e-16 75.5
Msa0588670 MtrunA17_Chr1g0194481 57.895 76 32 0 316 391 142 217 1.19e-24 104
Msa0588670 MtrunA17_Chr1g0194481 51.316 76 37 0 180 255 158 233 2.10e-19 89.4
Msa0588670 MtrunA17_Chr5g0418781 56.962 79 34 0 310 388 102 180 1.54e-24 103
Msa0588670 MtrunA17_Chr5g0418781 61.404 57 22 0 180 236 124 180 1.37e-16 80.1
Msa0588670 MtrunA17_Chr3g0129321 54.667 75 34 0 318 392 104 178 5.28e-23 96.7
Msa0588670 MtrunA17_Chr3g0129321 45.946 74 40 0 166 239 104 177 3.98e-16 77.0
Msa0588670 MtrunA17_Chr4g0051181 51.899 79 37 1 316 393 227 305 6.17e-23 101
Msa0588670 MtrunA17_Chr3g0099641 51.282 78 37 1 315 391 234 311 7.74e-23 101
Msa0588670 MtrunA17_Chr3g0099641 37.079 89 53 2 163 248 232 320 1.59e-13 72.8
Msa0588670 MtrunA17_Chr7g0270831 53.247 77 35 1 316 391 200 276 8.32e-23 100
Msa0588670 MtrunA17_Chr7g0270831 38.384 99 56 3 155 248 187 285 5.01e-15 77.0
Msa0588670 MtrunA17_Chr2g0288871 51.899 79 37 1 314 391 287 365 8.89e-23 101
Msa0588670 MtrunA17_Chr2g0288871 40.000 85 48 2 158 239 281 365 2.06e-15 79.0
Msa0588670 MtrunA17_Chr4g0075201 51.899 79 37 1 314 391 249 327 1.52e-22 100
Msa0588670 MtrunA17_Chr4g0075201 37.647 85 50 2 158 239 243 327 4.28e-14 74.3
Msa0588670 MtrunA17_Chr2g0322391 51.899 79 37 1 314 391 331 409 2.67e-22 100
Msa0588670 MtrunA17_Chr2g0322391 35.955 89 54 2 154 239 321 409 1.90e-12 69.7
Msa0588670 MtrunA17_Chr4g0060271 50.633 79 38 1 315 392 238 316 2.82e-22 100
Msa0588670 MtrunA17_Chr4g0060271 48.333 60 30 1 181 239 256 315 6.55e-13 71.2
Msa0588670 MtrunA17_Chr7g0248721 59.211 76 30 1 313 388 122 196 3.33e-22 94.7
Msa0588670 MtrunA17_Chr7g0248721 46.667 75 39 1 163 237 124 197 6.03e-15 73.9
Msa0588670 MtrunA17_Chr5g0432071 47.059 102 51 3 175 274 99 199 7.05e-22 94.0
Msa0588670 MtrunA17_Chr5g0432071 53.333 60 27 1 332 391 104 162 2.34e-13 69.3
Msa0588670 MtrunA17_Chr4g0068541 53.247 77 36 0 316 392 192 268 1.03e-21 97.4
Msa0588670 MtrunA17_Chr4g0068541 50.000 76 37 1 180 255 208 282 1.48e-15 78.6
Msa0588670 MtrunA17_Chr1g0189391 46.667 105 54 2 286 388 50 154 3.00e-21 94.7
Msa0588670 MtrunA17_Chr1g0189391 50.000 58 28 1 180 236 97 154 5.60e-12 67.0
Msa0588670 MtrunA17_Chr1g0147881 53.165 79 33 2 313 390 246 321 1.19e-20 93.2
Msa0588670 MtrunA17_Chr1g0147881 50.877 57 27 1 181 236 263 319 8.54e-12 66.6
Msa0588670 MtrunA17_Chr4g0053281 50.633 79 35 2 313 390 250 325 1.46e-20 92.8
Msa0588670 MtrunA17_Chr4g0053281 52.632 57 26 1 181 236 267 323 4.30e-14 73.6
Msa0588670 MtrunA17_Chr2g0302391 45.361 97 45 3 311 402 193 286 2.87e-20 93.2
Msa0588670 MtrunA17_Chr2g0302391 42.647 68 38 1 181 247 212 279 8.87e-12 67.0
Msa0588670 MtrunA17_Chr6g0485431 52.632 76 35 1 318 392 140 215 3.14e-20 92.0
Msa0588670 MtrunA17_Chr6g0485431 47.692 65 33 1 181 244 155 219 8.09e-15 75.9
Msa0588670 MtrunA17_Chr7g0216891 49.351 77 38 1 315 390 202 278 4.12e-20 93.6
Msa0588670 MtrunA17_Chr7g0216891 51.724 58 27 1 181 237 220 277 6.45e-14 74.3
Msa0588670 MtrunA17_Chr2g0333851 41.525 118 53 4 309 421 144 250 4.88e-20 90.9
Msa0588670 MtrunA17_Chr2g0333851 50.820 61 29 1 180 239 169 229 5.30e-16 79.0
Msa0588670 MtrunA17_Chr4g0025061 49.367 79 39 1 314 391 342 420 5.37e-20 93.2
Msa0588670 MtrunA17_Chr4g0025061 38.889 90 48 3 164 248 342 429 8.30e-12 67.4
Msa0588670 MtrunA17_Chr5g0401821 50.617 81 39 1 313 392 180 260 6.95e-20 89.7
Msa0588670 MtrunA17_Chr5g0401821 52.632 57 26 1 181 236 200 256 1.98e-13 70.5
Msa0588670 MtrunA17_Chr4g0025051 40.708 113 53 2 319 417 322 434 7.10e-19 89.7
Msa0588670 MtrunA17_Chr4g0025051 34.066 91 59 1 159 248 314 404 4.47e-11 65.1
Msa0588670 MtrunA17_Chr3g0136961 35.570 149 73 4 258 388 52 195 9.00e-19 86.7
Msa0588670 MtrunA17_Chr3g0136961 48.276 58 29 1 180 236 138 195 1.37e-13 71.2
Msa0588670 MtrunA17_Chr4g0071521 49.351 77 35 2 313 388 229 302 9.80e-18 84.0
Msa0588670 MtrunA17_Chr4g0071521 47.368 57 29 1 181 236 246 302 9.56e-11 63.2
Msa0588670 MtrunA17_Chr1g0184691 49.351 77 35 2 313 388 277 350 1.49e-17 84.3
Msa0588670 MtrunA17_Chr1g0184691 41.667 84 45 2 156 238 272 352 1.80e-13 71.6
Msa0588670 MtrunA17_Chr7g0238921 59.649 57 23 0 332 388 124 180 1.90e-17 83.2
Msa0588670 MtrunA17_Chr7g0238921 61.404 57 22 0 180 236 124 180 2.11e-17 83.2
Msa0588670 MtrunA17_Chr4g0001361 41.748 103 45 3 330 423 160 256 2.76e-17 82.8
Msa0588670 MtrunA17_Chr4g0001361 38.000 100 60 2 180 277 162 261 9.01e-16 78.2
Msa0588670 MtrunA17_Chr1g0150281 41.304 92 48 3 303 388 106 197 2.58e-16 79.3
Msa0588670 MtrunA17_Chr1g0150281 47.368 57 29 1 181 236 141 197 1.03e-12 68.6
Msa0588670 MtrunA17_Chr1g0150271 45.205 73 39 1 320 391 89 161 2.60e-16 79.0
Msa0588670 MtrunA17_Chr1g0150271 44.262 61 33 1 180 239 101 161 1.05e-11 65.1
Msa0588670 MtrunA17_Chr4g0024391 34.746 118 63 2 314 417 211 328 2.87e-15 78.2
Msa0588670 MtrunA17_Chr7g0270051 50.000 62 30 1 333 393 54 115 3.96e-15 75.5
Msa0588670 MtrunA17_Chr7g0270051 53.333 60 27 1 181 239 54 113 9.73e-14 71.2
Msa0588670 MtrunA17_Chr3g0139021 43.590 78 43 1 313 389 295 372 5.07e-15 77.0
Msa0588670 MtrunA17_Chr8g0379461 44.444 72 39 1 333 403 77 148 6.18e-15 74.7
Msa0588670 MtrunA17_Chr8g0379461 38.824 85 51 1 156 239 52 136 5.97e-11 62.8
Msa0588670 MtrunA17_Chr1g0202461 35.577 104 65 2 313 415 243 345 6.78e-15 76.3
Msa0588670 MtrunA17_Chr1g0202461 45.000 60 32 1 181 239 262 321 1.12e-11 66.6
Msa0588670 MtrunA17_Chr2g0293481 41.573 89 50 2 325 412 261 348 8.92e-15 76.6
Msa0588670 MtrunA17_Chr2g0293481 34.167 120 74 3 130 246 215 332 1.13e-12 70.1
Msa0588670 MtrunA17_Chr7g0228941 45.455 77 39 2 313 388 35 109 1.95e-14 70.1
Msa0588670 MtrunA17_Chr7g0228941 39.744 78 43 2 160 236 35 109 2.08e-11 61.2
Msa0588670 MtrunA17_Chr2g0319961 47.826 69 35 1 333 400 81 149 2.70e-14 72.8
Msa0588670 MtrunA17_Chr8g0387501 49.231 65 32 1 331 394 128 192 4.02e-14 72.8
Msa0588670 MtrunA17_Chr8g0387501 36.735 98 59 2 181 277 130 225 2.19e-12 67.4
Msa0588670 MtrunA17_Chr8g0348311 42.391 92 41 3 333 423 156 236 4.10e-14 73.6
Msa0588670 MtrunA17_Chr8g0348311 41.791 67 38 1 174 239 149 215 4.66e-11 64.3
Msa0588670 MtrunA17_Chr2g0289181 45.833 72 38 1 321 391 3 74 8.97e-14 70.9
Msa0588670 MtrunA17_Chr2g0289181 46.154 65 34 1 180 243 14 78 1.01e-11 64.7
Msa0588670 MtrunA17_Chr2g0284321 43.902 82 38 2 333 413 36 110 1.43e-13 70.1
Msa0588670 MtrunA17_Chr7g0248691 51.667 60 28 1 333 391 155 214 2.67e-13 70.9
Msa0588670 MtrunA17_Chr6g0468181 64.151 53 18 1 196 248 18 69 5.64e-13 65.5
Msa0588670 MtrunA17_Chr1g0188971 62.500 40 15 0 313 352 43 82 4.29e-12 62.0
Msa0588670 MtrunA17_Chr3g0126391 40.789 76 40 2 331 403 132 205 4.49e-12 67.4
Msa0588670 MtrunA17_Chr3g0126391 48.276 58 27 2 180 234 133 190 2.84e-11 64.7
Msa0588670 MtrunA17_Chr4g0009881 48.611 72 34 3 169 240 7 75 5.65e-12 62.8
Msa0588670 MtrunA17_Chr8g0387981 50.000 58 26 1 180 234 132 189 1.32e-11 66.2
Msa0588670 MtrunA17_Chr8g0387981 48.276 58 27 1 332 386 132 189 5.60e-11 64.3
Msa0588670 MtrunA17_Chr1g0188961 70.000 40 12 0 352 391 3 42 1.35e-11 60.1
Msa0588670 MtrunA17_Chr8g0347251 36.782 87 47 2 156 234 107 193 3.30e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0588670 AT2G38470.1 46.667 435 167 16 57 456 64 468 4.17e-96 300
Msa0588670 AT5G07100.1 47.110 346 105 10 50 394 28 296 1.47e-85 266
Msa0588670 AT5G07100.1 40.426 94 45 1 318 400 92 185 2.72e-14 73.9
Msa0588670 AT1G13960.1 43.733 375 153 9 48 391 121 468 1.03e-80 260
Msa0588670 AT5G07100.2 60.731 219 49 5 177 394 21 203 4.19e-80 248
Msa0588670 AT5G07100.2 49.275 69 35 0 332 400 24 92 1.60e-13 70.1
Msa0588670 AT5G07100.4 60.731 219 49 5 177 394 21 203 4.19e-80 248
Msa0588670 AT5G07100.4 49.275 69 35 0 332 400 24 92 1.60e-13 70.1
Msa0588670 AT5G07100.5 60.731 219 49 5 177 394 21 203 4.19e-80 248
Msa0588670 AT5G07100.5 49.275 69 35 0 332 400 24 92 1.60e-13 70.1
Msa0588670 AT5G07100.3 60.731 219 49 5 177 394 21 203 4.19e-80 248
Msa0588670 AT5G07100.3 49.275 69 35 0 332 400 24 92 1.60e-13 70.1
Msa0588670 AT4G26640.7 41.397 401 183 12 53 404 16 413 6.20e-77 250
Msa0588670 AT2G03340.1 41.855 399 188 12 48 421 124 503 7.16e-77 250
Msa0588670 AT4G26640.2 41.397 401 183 12 53 404 56 453 1.33e-76 250
Msa0588670 AT1G13960.2 55.102 245 78 5 177 391 73 315 1.36e-76 244
Msa0588670 AT4G26640.5 53.689 244 93 5 180 404 35 277 1.74e-75 242
Msa0588670 AT4G26640.5 54.839 62 27 1 330 391 33 93 4.39e-13 71.2
Msa0588670 AT4G26640.6 53.689 244 93 5 180 404 35 277 1.74e-75 242
Msa0588670 AT4G26640.6 54.839 62 27 1 330 391 33 93 4.39e-13 71.2
Msa0588670 AT4G26640.4 53.689 244 93 5 180 404 35 277 1.74e-75 242
Msa0588670 AT4G26640.4 54.839 62 27 1 330 391 33 93 4.39e-13 71.2
Msa0588670 AT4G26640.3 53.689 244 93 5 180 404 35 277 1.74e-75 242
Msa0588670 AT4G26640.3 54.839 62 27 1 330 391 33 93 4.39e-13 71.2
Msa0588670 AT4G26640.1 53.689 244 93 5 180 404 139 381 5.20e-75 244
Msa0588670 AT4G26640.1 54.839 62 27 1 330 391 137 197 3.51e-13 72.0
Msa0588670 AT2G30250.1 54.825 228 79 5 181 391 167 387 1.72e-71 232
Msa0588670 AT2G30250.1 56.250 64 28 0 181 244 329 392 1.55e-16 82.0
Msa0588670 AT3G01080.2 55.349 215 83 5 177 391 202 403 4.07e-66 220
Msa0588670 AT3G01080.1 55.349 215 83 5 177 391 164 365 6.69e-66 219
Msa0588670 AT4G26440.1 36.427 431 189 12 55 437 88 481 1.13e-63 216
Msa0588670 AT2G37260.2 44.000 250 104 3 177 392 80 327 2.39e-54 186
Msa0588670 AT2G37260.3 44.800 250 102 5 177 392 82 329 2.94e-54 186
Msa0588670 AT2G04880.2 43.775 249 112 7 172 397 105 348 4.76e-54 188
Msa0588670 AT2G37260.1 44.000 250 104 3 177 392 162 409 1.00e-53 187
Msa0588670 AT2G04880.1 40.860 279 101 9 172 397 105 372 2.09e-51 182
Msa0588670 AT4G30935.1 41.016 256 128 8 154 392 142 391 1.53e-46 168
Msa0588670 AT4G30935.1 41.667 96 49 1 181 276 332 420 5.11e-16 80.9
Msa0588670 AT5G56270.1 75.728 103 22 1 292 394 450 549 5.98e-45 167
Msa0588670 AT5G56270.1 34.127 252 129 11 28 244 87 336 5.35e-23 103
Msa0588670 AT5G56270.1 56.452 62 27 0 180 241 487 548 1.28e-16 83.2
Msa0588670 AT5G56270.1 55.738 61 24 2 332 391 273 331 8.66e-13 71.2
Msa0588670 AT4G12020.6 44.444 207 74 5 177 352 465 661 6.17e-36 143
Msa0588670 AT4G12020.6 49.180 61 30 1 331 391 467 526 8.99e-11 65.1
Msa0588670 AT4G12020.8 44.444 207 74 5 177 352 465 661 6.17e-36 143
Msa0588670 AT4G12020.8 49.180 61 30 1 331 391 467 526 8.99e-11 65.1
Msa0588670 AT4G12020.10 44.444 207 74 5 177 352 465 661 6.38e-36 143
Msa0588670 AT4G12020.10 49.180 61 30 1 331 391 467 526 9.23e-11 65.1
Msa0588670 AT4G12020.7 44.444 207 74 5 177 352 465 661 6.48e-36 142
Msa0588670 AT4G12020.7 49.180 61 30 1 331 391 467 526 8.71e-11 65.5
Msa0588670 AT4G12020.1 44.444 207 74 5 177 352 465 661 6.67e-36 142
Msa0588670 AT4G12020.1 49.180 61 30 1 331 391 467 526 8.71e-11 65.5
Msa0588670 AT4G12020.9 44.444 207 74 5 177 352 465 661 6.67e-36 142
Msa0588670 AT4G12020.9 49.180 61 30 1 331 391 467 526 8.71e-11 65.5
Msa0588670 AT4G12020.3 44.444 207 74 5 177 352 465 661 6.81e-36 142
Msa0588670 AT4G12020.3 49.180 61 30 1 331 391 467 526 9.24e-11 65.1
Msa0588670 AT4G12020.4 44.444 207 74 5 177 352 465 661 7.55e-36 142
Msa0588670 AT4G12020.4 49.180 61 30 1 331 391 467 526 9.32e-11 65.1
Msa0588670 AT4G12020.5 44.444 207 74 5 177 352 398 594 8.20e-36 142
Msa0588670 AT4G12020.2 44.444 207 74 5 177 352 465 661 8.21e-36 142
Msa0588670 AT4G12020.2 49.180 61 30 1 331 391 467 526 9.49e-11 65.1
Msa0588670 AT4G12020.11 44.444 207 74 5 177 352 465 661 1.32e-35 142
Msa0588670 AT2G44745.1 47.748 111 57 1 278 388 92 201 2.00e-28 112
Msa0588670 AT2G44745.1 54.386 57 26 0 180 236 145 201 6.56e-15 74.3
Msa0588670 AT4G18170.1 63.158 76 28 0 316 391 156 231 1.35e-27 113
Msa0588670 AT4G18170.1 47.126 87 46 0 153 239 145 231 1.01e-18 87.4
Msa0588670 AT1G29860.1 64.474 76 27 0 316 391 120 195 2.82e-27 111
Msa0588670 AT1G29860.1 52.778 72 34 0 180 251 136 207 7.30e-20 90.1
Msa0588670 AT4G39410.1 61.842 76 29 0 313 388 204 279 8.25e-27 110
Msa0588670 AT4G39410.1 46.154 78 41 1 180 256 223 300 1.91e-16 80.5
Msa0588670 AT1G55600.1 60.494 81 32 0 311 391 286 366 1.31e-26 112
Msa0588670 AT1G55600.1 54.054 74 30 1 172 241 295 368 2.61e-18 87.8
Msa0588670 AT5G46350.1 59.740 77 31 0 318 394 169 245 4.12e-26 108
Msa0588670 AT5G46350.1 50.000 80 38 1 166 245 169 246 6.63e-18 85.1
Msa0588670 AT5G26170.1 60.000 70 28 0 319 388 100 169 1.09e-25 103
Msa0588670 AT5G26170.1 46.377 69 37 0 168 236 101 169 6.82e-16 75.9
Msa0588670 AT5G13080.1 49.000 100 43 1 299 390 26 125 3.48e-25 101
Msa0588670 AT5G13080.1 43.373 83 44 1 169 251 56 135 1.20e-15 74.3
Msa0588670 AT5G49520.1 59.740 77 31 0 316 392 205 281 3.49e-25 107
Msa0588670 AT5G49520.1 56.250 64 28 0 180 243 221 284 6.35e-18 86.3
Msa0588670 AT3G01970.1 62.500 72 27 0 319 390 52 123 3.79e-25 101
Msa0588670 AT3G01970.1 47.059 68 36 0 169 236 54 121 9.59e-15 72.0
Msa0588670 AT2G47260.1 50.000 106 49 2 316 417 158 263 5.21e-25 106
Msa0588670 AT2G47260.1 53.125 64 30 0 180 243 174 237 6.02e-16 79.3
Msa0588670 AT5G41570.1 57.895 76 32 0 313 388 79 154 5.37e-25 102
Msa0588670 AT5G41570.1 46.575 73 39 0 165 237 83 155 7.20e-17 79.0
Msa0588670 AT1G64000.1 55.696 79 35 0 310 388 92 170 7.44e-25 102
Msa0588670 AT1G64000.1 53.448 58 27 0 180 237 114 171 3.49e-16 77.4
Msa0588670 AT1G69310.4 57.895 76 32 0 313 388 128 203 9.10e-25 104
Msa0588670 AT1G69310.4 49.383 81 41 0 156 236 123 203 4.98e-18 84.7
Msa0588670 AT1G69310.2 57.895 76 32 0 313 388 128 203 9.10e-25 104
Msa0588670 AT1G69310.2 49.383 81 41 0 156 236 123 203 4.98e-18 84.7
Msa0588670 AT1G69310.1 57.895 76 32 0 313 388 128 203 9.10e-25 104
Msa0588670 AT1G69310.1 49.383 81 41 0 156 236 123 203 4.98e-18 84.7
Msa0588670 AT5G64810.1 59.155 71 29 0 319 389 97 167 2.81e-24 100
Msa0588670 AT5G64810.1 41.463 82 48 0 155 236 85 166 2.93e-15 74.7
Msa0588670 AT4G04450.2 54.430 79 35 1 314 391 180 258 1.07e-23 103
Msa0588670 AT4G04450.2 38.824 85 49 2 158 239 174 258 1.42e-14 76.3
Msa0588670 AT5G15130.2 51.899 79 37 1 315 392 168 246 3.83e-23 102
Msa0588670 AT5G15130.2 38.889 90 52 2 153 239 156 245 1.51e-12 70.1
Msa0588670 AT4G04450.1 54.430 79 35 1 314 391 274 352 4.48e-23 102
Msa0588670 AT4G04450.1 38.824 85 49 2 158 239 268 352 2.38e-14 75.9
Msa0588670 AT2G46130.1 56.579 76 33 0 313 388 11 86 5.15e-23 94.0
Msa0588670 AT2G46130.1 55.172 58 26 0 180 237 30 87 3.16e-17 77.8
Msa0588670 AT5G15130.1 51.899 79 37 1 315 392 210 288 5.50e-23 102
Msa0588670 AT5G15130.1 38.889 90 52 2 153 239 198 287 1.89e-12 70.1
Msa0588670 AT1G68150.1 51.899 79 37 1 316 393 219 297 7.89e-23 100
Msa0588670 AT1G68150.1 51.667 60 28 1 181 239 236 295 1.83e-14 75.5
Msa0588670 AT1G62300.1 53.165 79 36 1 314 391 294 372 1.01e-22 101
Msa0588670 AT1G62300.1 38.202 89 52 2 154 239 284 372 4.48e-14 75.1
Msa0588670 AT4G22070.4 53.165 79 36 1 314 391 279 357 1.30e-22 101
Msa0588670 AT4G22070.4 37.647 85 50 2 158 239 273 357 7.39e-13 71.2
Msa0588670 AT4G22070.3 53.165 79 36 1 314 391 279 357 1.30e-22 101
Msa0588670 AT4G22070.3 37.647 85 50 2 158 239 273 357 7.39e-13 71.2
Msa0588670 AT4G22070.2 53.165 79 36 1 314 391 279 357 1.30e-22 101
Msa0588670 AT4G22070.2 37.647 85 50 2 158 239 273 357 7.39e-13 71.2
Msa0588670 AT4G22070.1 53.165 79 36 1 314 391 279 357 1.30e-22 101
Msa0588670 AT4G22070.1 37.647 85 50 2 158 239 273 357 7.39e-13 71.2
Msa0588670 AT1G18860.1 53.846 78 35 1 315 391 222 299 2.91e-22 100
Msa0588670 AT1G18860.1 48.333 60 30 1 181 239 240 299 7.74e-12 67.8
Msa0588670 AT3G01080.3 67.188 64 20 1 177 240 202 264 4.91e-22 97.4
Msa0588670 AT3G01080.3 53.968 63 28 1 332 394 205 266 1.70e-13 72.0
Msa0588670 AT3G62340.1 57.143 77 33 0 316 392 102 178 1.33e-21 95.1
Msa0588670 AT3G62340.1 43.820 89 50 0 160 248 98 186 3.19e-18 85.1
Msa0588670 AT4G31550.2 50.538 93 41 3 313 403 229 318 9.13e-21 93.6
Msa0588670 AT4G31550.2 52.632 57 26 1 181 236 246 302 9.91e-13 69.7
Msa0588670 AT4G31550.1 50.538 93 41 3 313 403 230 319 9.26e-21 93.6
Msa0588670 AT4G31550.1 52.632 57 26 1 181 236 247 303 9.73e-13 69.7
Msa0588670 AT4G01720.1 50.649 77 37 1 316 391 223 299 2.76e-20 94.0
Msa0588670 AT4G01720.1 41.304 92 47 4 155 239 208 299 3.67e-14 75.1
Msa0588670 AT2G23320.1 49.367 79 36 2 313 390 224 299 4.63e-20 91.3
Msa0588670 AT2G23320.1 50.877 57 27 1 181 236 241 297 5.85e-13 70.1
Msa0588670 AT1G69310.3 53.947 76 31 1 313 388 128 199 4.74e-20 90.5
Msa0588670 AT1G69310.3 45.679 81 40 1 156 236 123 199 1.99e-13 71.2
Msa0588670 AT4G24240.1 53.333 75 34 1 319 392 268 342 5.65e-20 91.7
Msa0588670 AT4G24240.1 50.877 57 27 1 181 236 282 338 1.85e-13 72.0
Msa0588670 AT2G24570.1 54.545 77 31 2 313 388 227 300 3.02e-19 89.0
Msa0588670 AT2G24570.1 52.632 57 26 1 181 236 244 300 1.26e-12 69.3
Msa0588670 AT1G80840.1 38.983 118 56 3 330 431 144 261 7.34e-19 87.4
Msa0588670 AT1G80840.1 50.820 61 29 1 180 239 146 206 1.31e-15 77.8
Msa0588670 AT5G43290.1 63.158 57 21 0 180 236 114 170 7.46e-19 87.0
Msa0588670 AT5G43290.1 55.932 59 26 0 330 388 112 170 1.78e-15 77.0
Msa0588670 AT5G28650.1 50.649 77 34 2 313 388 246 319 9.87e-19 87.8
Msa0588670 AT5G28650.1 47.368 57 29 1 181 236 263 319 3.06e-11 65.1
Msa0588670 AT2G46130.2 52.632 76 32 1 313 388 11 82 2.24e-18 80.9
Msa0588670 AT2G46130.2 50.000 58 25 1 180 237 30 83 1.12e-12 64.7
Msa0588670 AT2G21900.1 50.000 74 34 1 321 391 95 168 2.52e-18 84.0
Msa0588670 AT2G21900.1 39.773 88 45 1 152 239 89 168 1.29e-16 79.0
Msa0588670 AT3G04670.1 50.649 77 34 2 313 388 246 319 2.66e-18 86.3
Msa0588670 AT3G04670.1 49.123 57 28 1 181 236 263 319 6.37e-12 67.4
Msa0588670 AT2G30590.1 36.667 150 80 4 254 388 221 370 3.73e-18 86.7
Msa0588670 AT2G30590.1 41.667 84 45 2 156 238 292 372 3.82e-13 71.2
Msa0588670 AT4G23550.1 43.678 87 48 1 321 406 129 215 2.87e-17 83.2
Msa0588670 AT1G69810.2 35.659 129 67 3 280 392 79 207 3.29e-17 83.2
Msa0588670 AT1G69810.1 35.659 129 67 3 280 392 137 265 5.11e-17 83.2
Msa0588670 AT2G25000.2 48.387 62 31 1 331 391 102 163 2.95e-16 78.6
Msa0588670 AT2G25000.2 43.284 67 37 1 180 245 103 169 2.07e-13 70.1
Msa0588670 AT2G25000.4 48.387 62 31 1 331 391 102 163 2.95e-16 78.6
Msa0588670 AT2G25000.4 43.284 67 37 1 180 245 103 169 2.07e-13 70.1
Msa0588670 AT2G25000.3 48.387 62 31 1 331 391 124 185 4.78e-16 78.2
Msa0588670 AT2G25000.3 43.284 67 37 1 180 245 125 191 2.71e-13 70.1
Msa0588670 AT2G25000.1 48.387 62 31 1 331 391 145 206 7.06e-16 78.2
Msa0588670 AT2G25000.1 43.284 67 37 1 180 245 146 212 4.28e-13 70.1
Msa0588670 AT4G31800.2 48.387 62 31 1 331 391 110 171 7.28e-16 77.8
Msa0588670 AT4G31800.2 42.254 71 40 1 180 249 111 181 7.93e-14 71.6
Msa0588670 AT4G31800.1 48.387 62 31 1 331 391 175 236 1.16e-15 78.2
Msa0588670 AT4G31800.1 42.254 71 40 1 180 249 176 246 1.25e-13 72.0
Msa0588670 AT1G29280.1 50.820 61 29 1 333 392 75 135 5.45e-15 75.5
Msa0588670 AT1G29280.1 46.970 66 34 1 181 245 75 140 3.73e-13 70.1
Msa0588670 AT4G01250.1 52.381 63 29 1 333 394 129 191 6.83e-15 75.9
Msa0588670 AT4G01250.1 31.304 115 71 2 181 287 129 243 4.44e-12 67.4
Msa0588670 AT5G52830.1 40.426 94 54 2 313 405 147 239 7.45e-15 76.3
Msa0588670 AT5G52830.1 48.333 60 30 1 181 239 166 225 2.62e-11 65.5
Msa0588670 AT1G30650.1 40.741 81 47 1 315 394 200 280 7.93e-14 73.9
Msa0588670 AT1G30650.1 50.000 60 29 1 181 239 218 277 1.10e-11 67.0
Msa0588670 AT2G34830.1 40.741 81 47 1 315 394 198 278 8.72e-14 73.6
Msa0588670 AT2G34830.1 49.254 67 31 2 181 246 216 280 2.80e-12 68.9
Msa0588670 AT2G34830.2 40.741 81 47 1 315 394 207 287 9.46e-14 73.6
Msa0588670 AT2G34830.2 49.254 67 31 2 181 246 225 289 2.72e-12 68.9
Msa0588670 AT3G58710.1 45.946 74 33 2 333 405 72 139 6.77e-13 69.3
Msa0588670 AT3G58710.1 43.421 76 39 2 181 255 72 144 6.64e-11 63.5
Msa0588670 AT3G58710.2 45.946 74 33 2 333 405 71 138 7.34e-13 69.3
Msa0588670 AT3G58710.2 43.421 76 39 2 181 255 71 143 7.14e-11 63.2
Msa0588670 AT5G45260.1 42.683 82 42 2 179 257 1207 1286 7.15e-12 68.6
Msa0588670 AT5G45050.4 44.186 86 34 3 316 394 1026 1104 7.25e-12 68.6
Msa0588670 AT5G45050.2 44.186 86 34 3 316 394 1137 1215 7.41e-12 68.6
Msa0588670 AT5G45050.1 44.186 86 34 3 316 394 1165 1243 7.71e-12 68.6
Msa0588670 AT5G24110.1 31.206 141 90 4 319 453 99 238 4.51e-11 64.3

Find 70 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGGCTTCTGATCTTTCTT+TGG 0.174215 4_2:+11122231 Msa0588670:CDS
TTCTTCTTCATTGAGCAAAT+TGG 0.201399 4_2:-11122070 None:intergenic
GTGCACTTGTAATAACTTCT+TGG 0.242130 4_2:-11122043 None:intergenic
TGGAGGAGATTATGATGATT+TGG 0.259847 4_2:+11122294 Msa0588670:CDS
GAAGAAAGTTGAAAGGTCTT+TGG 0.287157 4_2:+11122087 Msa0588670:CDS
GGAGGAGATTATGATGATTT+GGG 0.288731 4_2:+11122295 Msa0588670:CDS
GTACTGATCTTACCATCTTT+TGG 0.288931 4_2:-11122326 None:intergenic
ATGGCTTCTGATCTTTCTTT+GGG 0.307243 4_2:+11122232 Msa0588670:CDS
TTATTTGCATACCTTGGGTT+TGG 0.317158 4_2:-11122713 None:intergenic
GGATATAGGTGGAGGAAATA+TGG 0.321679 4_2:+11122668 Msa0588670:CDS
TTCATCATGCAACAACTCTA+TGG 0.324697 4_2:+11122213 Msa0588670:CDS
GGATACAGGTGGAGAAAATA+TGG 0.326573 4_2:+11121992 Msa0588670:CDS
TATGGACAGAAAGTAGTTAA+AGG 0.332389 4_2:+11122686 Msa0588670:CDS
GTCACTGCTGAAGGCCTTAT+AGG 0.353697 4_2:-11123158 None:intergenic
AATGTGTCCTGTGTCTTTAG+TGG 0.354616 4_2:-11121833 None:intergenic
CTTATAGACATAGAAGCATT+AGG 0.359194 4_2:-11121944 None:intergenic
TATGCTGTTGATTGATGCTT+TGG 0.359996 4_2:-11121053 None:intergenic
TTGATGCTTTGGACAGTAGA+AGG 0.389799 4_2:-11121042 None:intergenic
ATTACTCAAATAGTATATAA+AGG 0.400287 4_2:+11122121 Msa0588670:CDS
TTCTGATCTTTCTTTGGGAG+AGG 0.403118 4_2:+11122237 Msa0588670:CDS
AGCCGAGTATTGTTCCGAAT+TGG 0.406866 4_2:-11123318 None:intergenic
ATATTCTTGATGATGGATAT+AGG 0.416334 4_2:+11122654 Msa0588670:CDS
AATTGGTTCAAATACCAATT+CGG 0.428619 4_2:+11123304 Msa0588670:CDS
CATGTAATGTTACACCTATA+AGG 0.432770 4_2:+11123144 Msa0588670:CDS
TTATGATGATTTGGGAATAG+AGG 0.442880 4_2:+11122303 Msa0588670:CDS
GCAGTAATCACAACATATGA+AGG 0.450008 4_2:+11123041 Msa0588670:CDS
GAAATTGATATTCTTGATGA+TGG 0.452886 4_2:+11122647 Msa0588670:CDS
GTTGAAAGGTCTTTGGATGA+TGG 0.456932 4_2:+11122094 Msa0588670:CDS
TACATTAGAAGAAGAAAGAA+AGG 0.465181 4_2:-11120598 None:intergenic
TTAGAAGAAGAAAGAAAGGA+AGG 0.477240 4_2:-11120594 None:intergenic
AGAAGGGTGTAGAACTGTTA+AGG 0.478856 4_2:+11122595 Msa0588670:CDS
GGTGATGTTATTGTTTGTGT+TGG 0.478952 4_2:-11120427 None:intergenic
CAAAGAAAATCAGAAGAAGA+TGG 0.492604 4_2:+11121971 Msa0588670:CDS
AATCAGAAGAAGATGGATAC+AGG 0.502233 4_2:+11121978 Msa0588670:CDS
TTGAAAGGTCTTTGGATGAT+GGG 0.504431 4_2:+11122095 Msa0588670:CDS
GGTGGAAAATCAGAATAAGA+AGG 0.506570 4_2:-11120540 None:intergenic
GTAGTTTGAACCACAACTCT+AGG 0.508298 4_2:-11122620 None:intergenic
TACCAATTCGGAACAATACT+CGG 0.514905 4_2:+11123316 Msa0588670:CDS
AGCTATTCTTATTCCACAGA+AGG 0.516161 4_2:+11122578 Msa0588670:CDS
GGCTCATTTGTATAAGATGA+AGG 0.527740 4_2:-11121021 None:intergenic
CTCTTCCTAGAGGTACATCA+TGG 0.532042 4_2:-11123073 None:intergenic
GGTGAATTCAATAACTCAGA+TGG 0.537992 4_2:-11120573 None:intergenic
TTCCACAAGCATGTTTCAAG+TGG 0.546004 4_2:+11121155 Msa0588670:CDS
AAACAATAACATCACCACCT+TGG 0.561789 4_2:+11120434 Msa0588670:CDS
TTGTACACTGAGGCTTAGGA+TGG 0.563371 4_2:-11122153 None:intergenic
GAATAGTTAGTCACTGCTGA+AGG 0.564525 4_2:-11123167 None:intergenic
CATGATGTACCTCTAGGAAG+AGG 0.569832 4_2:+11123074 Msa0588670:CDS
AACAAAGTTAGCAATATCCA+AGG 0.571515 4_2:-11120451 None:intergenic
TATGGAGAGAAACAAGTGAA+AGG 0.574260 4_2:+11122010 Msa0588670:CDS
TACCACTTGAAACATGCTTG+TGG 0.577939 4_2:-11121157 None:intergenic
GTGGAAAATCAGAATAAGAA+GGG 0.578293 4_2:-11120539 None:intergenic
TTGATGATGGATATAGGTGG+AGG 0.585484 4_2:+11122660 Msa0588670:CDS
TGGGAATAGAGGCCAAAAGA+TGG 0.587508 4_2:+11122314 Msa0588670:CDS
AACAGTTCTACACCCTTCTG+TGG 0.594037 4_2:-11122591 None:intergenic
TACTACAAATGTGTAATCCA+AGG 0.596332 4_2:+11122972 Msa0588670:CDS
CATAACCATGATGTACCTCT+AGG 0.598674 4_2:+11123068 Msa0588670:CDS
GCTATTCTTATTCCACAGAA+GGG 0.600897 4_2:+11122579 Msa0588670:CDS
AACTCAGATGGACTGAAACC+AGG 0.615499 4_2:-11120561 None:intergenic
CATCAATCAACAGCATAGCA+AGG 0.616759 4_2:+11121059 Msa0588670:CDS
CAGTAATCACAACATATGAA+GGG 0.624707 4_2:+11123042 Msa0588670:CDS
GGAAGAACCACTAAAGACAC+AGG 0.628554 4_2:+11121826 Msa0588670:intron
CAATGAAGAAGAAAGTTGAA+AGG 0.635399 4_2:+11122080 Msa0588670:CDS
TTAAAGGAAATCCAAACCCA+AGG 0.636841 4_2:+11122702 Msa0588670:CDS
TGTTAAGGAACCTAGAGTTG+TGG 0.637272 4_2:+11122610 Msa0588670:CDS
CTTGAAATTCCTCTTCCTAG+AGG 0.637467 4_2:-11123083 None:intergenic
CAGAAGAAGATGGATACAGG+TGG 0.640643 4_2:+11121981 Msa0588670:CDS
GAGTTGTTGCATGATGAAGA+AGG 0.644778 4_2:-11122208 None:intergenic
TTCTTGATGATGGATATAGG+TGG 0.671599 4_2:+11122657 Msa0588670:CDS
AAAGTTAGCAATATCCAAGG+TGG 0.700473 4_2:-11120448 None:intergenic
TCAGATGGACTGAAACCAGG+TGG 0.709334 4_2:-11120558 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTTTTAAGTAAAAGTTA+TGG - chr4_2:11121201-11121220 None:intergenic 15.0%
!! TTTCATTAATGATAATATGT+TGG + chr4_2:11121553-11121572 Msa0588670:intron 15.0%
!! ATTACTCAAATAGTATATAA+AGG + chr4_2:11122121-11122140 Msa0588670:CDS 15.0%
!! TATCTATAACTATAACTAAA+TGG - chr4_2:11122764-11122783 None:intergenic 15.0%
!! CTAAATGATATAATATACTA+CGG + chr4_2:11122791-11122810 Msa0588670:intron 15.0%
!! CAAATAGAAAATACAAATGA+TGG + chr4_2:11120819-11120838 Msa0588670:intron 20.0%
!! TCATTAATGAAATGCAATTA+AGG - chr4_2:11121545-11121564 None:intergenic 20.0%
!!! CAAACAAATTTTTCATTTGA+AGG + chr4_2:11121878-11121897 Msa0588670:CDS 20.0%
!! TATTCAATAAATGGTATATG+TGG + chr4_2:11122392-11122411 Msa0588670:intron 20.0%
!! TTTATGATTCTCATTATTGT+AGG + chr4_2:11122534-11122553 Msa0588670:intron 20.0%
!! TATGCAAATAATACAACTTA+CGG + chr4_2:11122725-11122744 Msa0588670:intron 20.0%
!!! AAACGACTATTATTTTTAGA+CGG + chr4_2:11122863-11122882 Msa0588670:intron 20.0%
!! GAACAAGTTATTATCATATA+GGG - chr4_2:11122930-11122949 None:intergenic 20.0%
!! TGAACAAGTTATTATCATAT+AGG - chr4_2:11122931-11122950 None:intergenic 20.0%
! TACATTAGAAGAAGAAAGAA+AGG - chr4_2:11120601-11120620 None:intergenic 25.0%
!!! CTAATCATGGTTTTAAATTG+CGG + chr4_2:11120688-11120707 Msa0588670:intron 25.0%
!!! TAATCATGGTTTTAAATTGC+GGG + chr4_2:11120689-11120708 Msa0588670:intron 25.0%
!! CGTATTTTGTCACAATATAA+AGG - chr4_2:11120732-11120751 None:intergenic 25.0%
!! CCATAATATAAAGGATTTTG+AGG - chr4_2:11120796-11120815 None:intergenic 25.0%
! CCTCAAAATCCTTTATATTA+TGG + chr4_2:11120793-11120812 Msa0588670:intron 25.0%
! TATTTGCAGCCATAATATAA+AGG - chr4_2:11120805-11120824 None:intergenic 25.0%
! AAAAGAAGAGCAATAAACAA+AGG - chr4_2:11121325-11121344 None:intergenic 25.0%
!! CAAGATAGTTTGAATAGTTT+TGG + chr4_2:11121397-11121416 Msa0588670:intron 25.0%
!!! AAACATTTTTAAAGCTGATG+TGG + chr4_2:11121498-11121517 Msa0588670:intron 25.0%
! AATAAATCACACATTGTTTG+TGG - chr4_2:11121749-11121768 None:intergenic 25.0%
!! AATTTTTCATTTGAAGGACA+AGG + chr4_2:11121884-11121903 Msa0588670:CDS 25.0%
!!! ATGAAGTACCAATATTTTTG+AGG + chr4_2:11122492-11122511 Msa0588670:intron 25.0%
! GAAATCAACCTCAAAAATAT+TGG - chr4_2:11122503-11122522 None:intergenic 25.0%
! GAAATTGATATTCTTGATGA+TGG + chr4_2:11122647-11122666 Msa0588670:CDS 25.0%
!!! ATATTCTTGATGATGGATAT+AGG + chr4_2:11122654-11122673 Msa0588670:CDS 25.0%
! TTGTATTATTTGCATACCTT+GGG - chr4_2:11122721-11122740 None:intergenic 25.0%
! AAGTTATTATCATATAGGGT+TGG - chr4_2:11122926-11122945 None:intergenic 25.0%
!! AATTGGTTCAAATACCAATT+CGG + chr4_2:11123304-11123323 Msa0588670:CDS 25.0%
AACAAAGTTAGCAATATCCA+AGG - chr4_2:11120454-11120473 None:intergenic 30.0%
!!! TCTTCATGAGTTTTTAGTTG+AGG - chr4_2:11120486-11120505 None:intergenic 30.0%
GTGGAAAATCAGAATAAGAA+GGG - chr4_2:11120542-11120561 None:intergenic 30.0%
TTAGAAGAAGAAAGAAAGGA+AGG - chr4_2:11120597-11120616 None:intergenic 30.0%
TCATACTGTAGTACTAATCA+TGG + chr4_2:11120675-11120694 Msa0588670:intron 30.0%
! TCTTTTGCAACTTTTAGTGT+TGG + chr4_2:11120934-11120953 Msa0588670:intron 30.0%
!! TGTTTTTGTGTTTGGAAAGT+GGG - chr4_2:11121111-11121130 None:intergenic 30.0%
TAGAAGACAAATCGATAAGA+CGG - chr4_2:11121649-11121668 None:intergenic 30.0%
TGTGTGATTTATTGATGCTT+TGG + chr4_2:11121756-11121775 Msa0588670:intron 30.0%
AATACTTGTTCAACTTGAAC+AGG + chr4_2:11121805-11121824 Msa0588670:intron 30.0%
!! CTTATAGACATAGAAGCATT+AGG - chr4_2:11121947-11121966 None:intergenic 30.0%
CAAAGAAAATCAGAAGAAGA+TGG + chr4_2:11121971-11121990 Msa0588670:CDS 30.0%
TTCTTCTTCATTGAGCAAAT+TGG - chr4_2:11122073-11122092 None:intergenic 30.0%
CAATGAAGAAGAAAGTTGAA+AGG + chr4_2:11122080-11122099 Msa0588670:CDS 30.0%
!!! ACATCACAAACTAGTTTTTC+TGG + chr4_2:11122274-11122293 Msa0588670:CDS 30.0%
! TTATGATGATTTGGGAATAG+AGG + chr4_2:11122303-11122322 Msa0588670:CDS 30.0%
GATTCTCATTATTGTAGGAA+AGG + chr4_2:11122539-11122558 Msa0588670:intron 30.0%
TATGGACAGAAAGTAGTTAA+AGG + chr4_2:11122686-11122705 Msa0588670:CDS 30.0%
GTTGTATTATTTGCATACCT+TGG - chr4_2:11122722-11122741 None:intergenic 30.0%
!! GTTCAAAATATTGTTTCTGC+AGG + chr4_2:11122946-11122965 Msa0588670:intron 30.0%
TACTACAAATGTGTAATCCA+AGG + chr4_2:11122972-11122991 Msa0588670:CDS 30.0%
CAGTAATCACAACATATGAA+GGG + chr4_2:11123042-11123061 Msa0588670:CDS 30.0%
CATGTAATGTTACACCTATA+AGG + chr4_2:11123144-11123163 Msa0588670:CDS 30.0%
!! GATGAATTCTAGAAGCTTTT+TGG + chr4_2:11123274-11123293 Msa0588670:CDS 30.0%
GGTGATGTTATTGTTTGTGT+TGG - chr4_2:11120430-11120449 None:intergenic 35.0%
AAACAATAACATCACCACCT+TGG + chr4_2:11120434-11120453 Msa0588670:CDS 35.0%
AAAGTTAGCAATATCCAAGG+TGG - chr4_2:11120451-11120470 None:intergenic 35.0%
GGTGGAAAATCAGAATAAGA+AGG - chr4_2:11120543-11120562 None:intergenic 35.0%
! TCTTATTCTGATTTTCCACC+TGG + chr4_2:11120543-11120562 Msa0588670:CDS 35.0%
GGTGAATTCAATAACTCAGA+TGG - chr4_2:11120576-11120595 None:intergenic 35.0%
TTGTGACAAAATACGACTGA+CGG + chr4_2:11120737-11120756 Msa0588670:intron 35.0%
TCAAATGCAACTTATGCATG+TGG + chr4_2:11120873-11120892 Msa0588670:intron 35.0%
!!! GCAACTTTTAGTGTTGGTTT+TGG + chr4_2:11120940-11120959 Msa0588670:intron 35.0%
GGCTCATTTGTATAAGATGA+AGG - chr4_2:11121024-11121043 None:intergenic 35.0%
! TATGCTGTTGATTGATGCTT+TGG - chr4_2:11121056-11121075 None:intergenic 35.0%
!!! CTGTTTTTGTGTTTGGAAAG+TGG - chr4_2:11121112-11121131 None:intergenic 35.0%
!!! GCATAGTCTGTTTTTGTGTT+TGG - chr4_2:11121119-11121138 None:intergenic 35.0%
TATGCTCATCTTGACTTTCT+TGG + chr4_2:11121249-11121268 Msa0588670:intron 35.0%
! AAGGCATTAAATGCAAGTGT+GGG - chr4_2:11121306-11121325 None:intergenic 35.0%
!! AAAGGCATTAAATGCAAGTG+TGG - chr4_2:11121307-11121326 None:intergenic 35.0%
! ATGTTTGACTTAGTCAACTG+AGG - chr4_2:11121449-11121468 None:intergenic 35.0%
CTGATGTGGCTAACATTAAA+CGG + chr4_2:11121512-11121531 Msa0588670:intron 35.0%
! GTTTGTGCTTCATGTTTTGT+TGG - chr4_2:11121911-11121930 None:intergenic 35.0%
AATCAGAAGAAGATGGATAC+AGG + chr4_2:11121978-11121997 Msa0588670:CDS 35.0%
TATGGAGAGAAACAAGTGAA+AGG + chr4_2:11122010-11122029 Msa0588670:CDS 35.0%
GTGCACTTGTAATAACTTCT+TGG - chr4_2:11122046-11122065 None:intergenic 35.0%
GAAGAAAGTTGAAAGGTCTT+TGG + chr4_2:11122087-11122106 Msa0588670:CDS 35.0%
TTGAAAGGTCTTTGGATGAT+GGG + chr4_2:11122095-11122114 Msa0588670:CDS 35.0%
TTCATCATGCAACAACTCTA+TGG + chr4_2:11122213-11122232 Msa0588670:CDS 35.0%
TATGGCTTCTGATCTTTCTT+TGG + chr4_2:11122231-11122250 Msa0588670:CDS 35.0%
ATGGCTTCTGATCTTTCTTT+GGG + chr4_2:11122232-11122251 Msa0588670:CDS 35.0%
!!! TCACAAACTAGTTTTTCTGG+AGG + chr4_2:11122277-11122296 Msa0588670:CDS 35.0%
TGGAGGAGATTATGATGATT+TGG + chr4_2:11122294-11122313 Msa0588670:CDS 35.0%
GGAGGAGATTATGATGATTT+GGG + chr4_2:11122295-11122314 Msa0588670:CDS 35.0%
!! GTACTGATCTTACCATCTTT+TGG - chr4_2:11122329-11122348 None:intergenic 35.0%
TGCTTATAATAGTGACCAGA+GGG - chr4_2:11122353-11122372 None:intergenic 35.0%
TTGCTTATAATAGTGACCAG+AGG - chr4_2:11122354-11122373 None:intergenic 35.0%
GGTCACTATTATAAACCAGA+GGG - chr4_2:11122434-11122453 None:intergenic 35.0%
! CTCTGGTTTATAATAGTGAC+CGG + chr4_2:11122433-11122452 Msa0588670:intron 35.0%
AGCTATTCTTATTCCACAGA+AGG + chr4_2:11122578-11122597 Msa0588670:CDS 35.0%
GCTATTCTTATTCCACAGAA+GGG + chr4_2:11122579-11122598 Msa0588670:CDS 35.0%
!! TTCTTGATGATGGATATAGG+TGG + chr4_2:11122657-11122676 Msa0588670:CDS 35.0%
TTAAAGGAAATCCAAACCCA+AGG + chr4_2:11122702-11122721 Msa0588670:CDS 35.0%
TTATTTGCATACCTTGGGTT+TGG - chr4_2:11122716-11122735 None:intergenic 35.0%
!! ACGGAAAGAGTACTTAACTT+CGG + chr4_2:11122882-11122901 Msa0588670:intron 35.0%
GCAGTAATCACAACATATGA+AGG + chr4_2:11123041-11123060 Msa0588670:CDS 35.0%
! AGCTTTTTGGACAGATCAAT+TGG + chr4_2:11123287-11123306 Msa0588670:CDS 35.0%
TACCAATTCGGAACAATACT+CGG + chr4_2:11123316-11123335 Msa0588670:CDS 35.0%
!!! ATGGTTTTAAATTGCGGGTG+CGG + chr4_2:11120694-11120713 Msa0588670:intron 40.0%
TGTGACAAAATACGACTGAC+GGG + chr4_2:11120738-11120757 Msa0588670:intron 40.0%
! TTGATGCTTTGGACAGTAGA+AGG - chr4_2:11121045-11121064 None:intergenic 40.0%
CATCAATCAACAGCATAGCA+AGG + chr4_2:11121059-11121078 Msa0588670:CDS 40.0%
TTCCACAAGCATGTTTCAAG+TGG + chr4_2:11121155-11121174 Msa0588670:CDS 40.0%
TACCACTTGAAACATGCTTG+TGG - chr4_2:11121160-11121179 None:intergenic 40.0%
AATGTGTCCTGTGTCTTTAG+TGG - chr4_2:11121836-11121855 None:intergenic 40.0%
GGATACAGGTGGAGAAAATA+TGG + chr4_2:11121992-11122011 Msa0588670:CDS 40.0%
GTTGAAAGGTCTTTGGATGA+TGG + chr4_2:11122094-11122113 Msa0588670:CDS 40.0%
! CTTTTTGTACACTGAGGCTT+AGG - chr4_2:11122160-11122179 None:intergenic 40.0%
! GCTCTTCTTTTTGTACACTG+AGG - chr4_2:11122166-11122185 None:intergenic 40.0%
GAGTTGTTGCATGATGAAGA+AGG - chr4_2:11122211-11122230 None:intergenic 40.0%
! TTCTGATCTTTCTTTGGGAG+AGG + chr4_2:11122237-11122256 Msa0588670:CDS 40.0%
CACTATTATAAACCAGAGGG+TGG - chr4_2:11122431-11122450 None:intergenic 40.0%
CGGTCACTATTATAAACCAG+AGG - chr4_2:11122435-11122454 None:intergenic 40.0%
TGGTTTATAATAGTGACCGG+AGG + chr4_2:11122436-11122455 Msa0588670:intron 40.0%
GGTTTATAATAGTGACCGGA+GGG + chr4_2:11122437-11122456 Msa0588670:intron 40.0%
GCACAAAAAAATACACCCTC+CGG - chr4_2:11122455-11122474 None:intergenic 40.0%
! AGAAGGGTGTAGAACTGTTA+AGG + chr4_2:11122595-11122614 Msa0588670:CDS 40.0%
TGTTAAGGAACCTAGAGTTG+TGG + chr4_2:11122610-11122629 Msa0588670:CDS 40.0%
GTAGTTTGAACCACAACTCT+AGG - chr4_2:11122623-11122642 None:intergenic 40.0%
!! TTGATGATGGATATAGGTGG+AGG + chr4_2:11122660-11122679 Msa0588670:CDS 40.0%
GGATATAGGTGGAGGAAATA+TGG + chr4_2:11122668-11122687 Msa0588670:CDS 40.0%
! GTTTTCTCACAGTACAACCT+TGG - chr4_2:11122992-11123011 None:intergenic 40.0%
CATAACCATGATGTACCTCT+AGG + chr4_2:11123068-11123087 Msa0588670:CDS 40.0%
CTTGAAATTCCTCTTCCTAG+AGG - chr4_2:11123086-11123105 None:intergenic 40.0%
GAATAGTTAGTCACTGCTGA+AGG - chr4_2:11123170-11123189 None:intergenic 40.0%
!! AACTCAGATGGACTGAAACC+AGG - chr4_2:11120564-11120583 None:intergenic 45.0%
GGAAGAACCACTAAAGACAC+AGG + chr4_2:11121826-11121845 Msa0588670:intron 45.0%
CAGAAGAAGATGGATACAGG+TGG + chr4_2:11121981-11122000 Msa0588670:CDS 45.0%
TTGTACACTGAGGCTTAGGA+TGG - chr4_2:11122156-11122175 None:intergenic 45.0%
TGGGAATAGAGGCCAAAAGA+TGG + chr4_2:11122314-11122333 Msa0588670:CDS 45.0%
TTATAACGTAGACCACCCTC+TGG + chr4_2:11122416-11122435 Msa0588670:intron 45.0%
AACAGTTCTACACCCTTCTG+TGG - chr4_2:11122594-11122613 None:intergenic 45.0%
! CTCTTCCTAGAGGTACATCA+TGG - chr4_2:11123076-11123095 None:intergenic 45.0%
! CATGATGTACCTCTAGGAAG+AGG + chr4_2:11123074-11123093 Msa0588670:CDS 45.0%
! AGCCGAGTATTGTTCCGAAT+TGG - chr4_2:11123321-11123340 None:intergenic 45.0%
!!! TTTTATATTTATTCAATAAA+TGG + chr4_2:11122383-11122402 Msa0588670:intron 5.0%
!! TCAGATGGACTGAAACCAGG+TGG - chr4_2:11120561-11120580 None:intergenic 50.0%
! GTCACTGCTGAAGGCCTTAT+AGG - chr4_2:11123161-11123180 None:intergenic 50.0%
GGTAAGATCAGTACGCCCTC+TGG + chr4_2:11122335-11122354 Msa0588670:intron 55.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 11120399 11123385 11120399 ID=Msa0588670;Name=Msa0588670
chr4_2 mRNA 11120399 11123385 11120399 ID=Msa0588670-mRNA-1;Parent=Msa0588670;Name=Msa0588670-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.75|0|1|1|1|5|0|490
chr4_2 exon 11120399 11120617 11120399 ID=Msa0588670-mRNA-1:exon:3189;Parent=Msa0588670-mRNA-1
chr4_2 exon 11121018 11121176 11121018 ID=Msa0588670-mRNA-1:exon:3190;Parent=Msa0588670-mRNA-1
chr4_2 exon 11121827 11122335 11121827 ID=Msa0588670-mRNA-1:exon:3191;Parent=Msa0588670-mRNA-1
chr4_2 exon 11122556 11122723 11122556 ID=Msa0588670-mRNA-1:exon:3192;Parent=Msa0588670-mRNA-1
chr4_2 exon 11122968 11123385 11122968 ID=Msa0588670-mRNA-1:exon:3193;Parent=Msa0588670-mRNA-1
chr4_2 CDS 11120399 11120617 11120399 ID=Msa0588670-mRNA-1:cds;Parent=Msa0588670-mRNA-1
chr4_2 CDS 11121018 11121176 11121018 ID=Msa0588670-mRNA-1:cds;Parent=Msa0588670-mRNA-1
chr4_2 CDS 11121827 11122335 11121827 ID=Msa0588670-mRNA-1:cds;Parent=Msa0588670-mRNA-1
chr4_2 CDS 11122556 11122723 11122556 ID=Msa0588670-mRNA-1:cds;Parent=Msa0588670-mRNA-1
chr4_2 CDS 11122968 11123385 11122968 ID=Msa0588670-mRNA-1:cds;Parent=Msa0588670-mRNA-1
Gene Sequence

>Msa0588670

ATGTCTTTTAGTTTCAACAATCACTTTTCCAACACAAACAATAACATCACCACCTTGGATATTGCTAACTTTGTTGAAACTTCTCCTCAACTAAAAACTCATGAAGATGATGATCATTTTTCACTTGATGATGTAATTTACCCTTCTTATTCTGATTTTCCACCTGGTTTCAGTCCATCTGAGTTATTGAATTCACCTTCCTTTCTTTCTTCTTCTAATATTCCTTCATCTTATACAAATGAGCCTTCTACTGTCCAAAGCATCAATCAACAGCATAGCAAGGAATTAGAAGAGAGAAACTTCTCTGAGCCCACTTTCCAAACACAAAAACAGACTATGCATGATCTCTTTCAATCTTCCACAAGCATGTTTCAAGTGGAAGAACCACTAAAGACACAGGACACATTGATATTCAATGAATCTACAAAGCAAACAAATTTTTCATTTGAAGGACAAGGACCAACAAAACATGAAGCACAAACTAATTCTTCAGTTCCTAATGCTTCTATGTCTATAAGAGAACAAAGAAAATCAGAAGAAGATGGATACAGGTGGAGAAAATATGGAGAGAAACAAGTGAAAGGAAGTGAAAATCCAAGAAGTTATTACAAGTGCACTAATCCAATTTGCTCAATGAAGAAGAAAGTTGAAAGGTCTTTGGATGATGGGCAAATTACTCAAATAGTATATAAAGGAAGTCATAACCATCCTAAGCCTCAGTGTACAAAAAGAAGAGCAAATTCTCAACATATTCATCAACCTTCTTCATCATGCAACAACTCTATGGCTTCTGATCTTTCTTTGGGAGAGGATGATTTTGATCAAACATCACAAACTAGTTTTTCTGGAGGAGATTATGATGATTTGGGAATAGAGGCCAAAAGATGGAAAGGAGAGAATGAAAATGATAGCTATTCTTATTCCACAGAAGGGTGTAGAACTGTTAAGGAACCTAGAGTTGTGGTTCAAACTACAAGTGAAATTGATATTCTTGATGATGGATATAGGTGGAGGAAATATGGACAGAAAGTAGTTAAAGGAAATCCAAACCCAAGGAGCTACTACAAATGTGTAATCCAAGGTTGTACTGTGAGAAAACATGTTGAGAGAGCTTCACATGATATTAAAGCAGTAATCACAACATATGAAGGGAAACATAACCATGATGTACCTCTAGGAAGAGGAATTTCAAGCAGTAGCATAAACAACAGAACTTCTCTTAACAACAATACATGTAATGTTACACCTATAAGGCCTTCAGCAGTGACTAACTATTCTAGCTTAGCAAATTTTACAAATTCACTTCATGATTCAAAGCTATCAAATTCTGAAAATCAAGAACATTTTCAGCTTGACATGTTGATGAATTCTAGAAGCTTTTTGGACAGATCAATTGGTTCAAATACCAATTCGGAACAATACTCGGCTAAAGATGACTCATTCTTTCAATCTTTTGTATTGAAGAACTTTTAA
Protein sequence

>Msa0588670

MSFSFNNHFSNTNNNITTLDIANFVETSPQLKTHEDDDHFSLDDVIYPSYSDFPPGFSPSELLNSPSFLSSSNIPSSYTNEPSTVQSINQQHSKELEERNFSEPTFQTQKQTMHDLFQSSTSMFQVEEPLKTQDTLIFNESTKQTNFSFEGQGPTKHEAQTNSSVPNASMSIREQRKSEEDGYRWRKYGEKQVKGSENPRSYYKCTNPICSMKKKVERSLDDGQITQIVYKGSHNHPKPQCTKRRANSQHIHQPSSSCNNSMASDLSLGEDDFDQTSQTSFSGGDYDDLGIEAKRWKGENENDSYSYSTEGCRTVKEPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCVIQGCTVRKHVERASHDIKAVITTYEGKHNHDVPLGRGISSSSINNRTSLNNNTCNVTPIRPSAVTNYSSLANFTNSLHDSKLSNSENQEHFQLDMLMNSRSFLDRSIGSNTNSEQYSAKDDSFFQSFVLKNF*